Query psy15226
Match_columns 362
No_of_seqs 433 out of 2574
Neff 11.0
Searched_HMMs 29240
Date Sat Aug 17 00:33:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9.3E-31 3.2E-35 241.3 25.8 280 14-304 197-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 4.8E-21 1.7E-25 174.3 10.6 256 2-281 170-432 (451)
3 3o7q_A L-fucose-proton symport 99.7 1.1E-16 3.9E-21 144.9 19.6 215 16-277 208-427 (438)
4 2cfq_A Lactose permease; trans 99.7 3.1E-18 1.1E-22 154.2 6.8 162 119-288 239-405 (417)
5 1pw4_A Glycerol-3-phosphate tr 99.7 2E-17 6.9E-22 150.3 10.6 169 115-288 43-212 (451)
6 4aps_A DI-OR tripeptide H+ sym 99.7 2.5E-15 8.7E-20 138.1 16.7 168 120-288 303-477 (491)
7 3o7q_A L-fucose-proton symport 99.6 7.4E-15 2.5E-19 132.9 16.7 159 116-279 42-226 (438)
8 2gfp_A EMRD, multidrug resista 99.6 2E-15 6.9E-20 133.8 11.8 165 115-287 15-179 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.6 1.9E-14 6.7E-19 132.2 15.5 159 116-282 29-196 (491)
10 2xut_A Proton/peptide symporte 99.5 1.3E-13 4.4E-18 127.8 16.9 159 116-281 28-197 (524)
11 2gfp_A EMRD, multidrug resista 99.5 2.1E-15 7.3E-20 133.7 2.9 220 2-267 139-361 (375)
12 4gc0_A D-xylose-proton symport 99.4 1.3E-12 4.4E-17 120.0 11.2 149 137-286 57-223 (491)
13 2xut_A Proton/peptide symporte 99.3 4.7E-12 1.6E-16 117.3 8.1 153 137-289 337-509 (524)
14 2cfq_A Lactose permease; trans 99.0 7.4E-11 2.5E-15 106.0 4.0 156 117-278 24-183 (417)
15 3rko_A NADH-quinone oxidoreduc 98.1 3.9E-07 1.3E-11 66.9 0.4 51 305-355 42-92 (147)
16 2g9p_A Antimicrobial peptide l 46.5 7.9 0.00027 17.7 0.9 14 154-167 2-15 (26)
17 2dw3_A Intrinsic membrane prot 36.6 76 0.0026 19.9 4.5 29 259-287 30-58 (77)
18 3arc_T Photosystem II reaction 34.2 47 0.0016 16.9 2.7 9 34-42 20-28 (32)
19 2nrg_A Intrinsic membrane prot 20.6 1.7E+02 0.0058 18.5 4.0 28 259-286 31-58 (82)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=9.3e-31 Score=241.26 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=211.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhcc
Q psy15226 14 VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 93 (362)
Q Consensus 14 ~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
.+||+.+.+..++.++..+..+++||||||+..+++.|++++.+++.+.++. .+++..+.++...++++ .......++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 274 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL-ATQAVQEIKHSLDHGRK-TGGRLLMFG 274 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTTHHHHSC
T ss_pred hhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch-hHHHHHHHHHHHHhhhh-hhhHHHHhc
Confidence 3699999999999999999999999999999999999999999998876554 22222222221111111 111122222
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhH
Q psy15226 94 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAA 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 173 (362)
.++.........+.++.+.+....|.|.+.+..+.+...........++...++.++++++.||+|||+.++.+..
T Consensus 275 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~ 350 (491)
T 4gc0_A 275 ----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL 350 (491)
T ss_dssp ----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchH
Confidence 2345556666666777778888899999988888776666777788889999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 174 LGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
...++.+.++.... ........+.....+..++ .+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.
T Consensus 351 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 351 GMAIGMFSLGTAFY----TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776654332 1233444455555555566 777888889999999999999999999999999999999887
Q ss_pred HHHHH------hhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHhccccc
Q psy15226 253 ILITK------SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQ 304 (362)
Q Consensus 253 ~~~~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 304 (362)
+.+.+ ..++...|++++++++++.++.++++||||++++||+|+.++ ++++
T Consensus 427 p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~-~~~~ 483 (491)
T 4gc0_A 427 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE-PETK 483 (491)
T ss_dssp HHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC-CCCc
Confidence 76543 345556788899999999888889999999999999988877 4443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.84 E-value=4.8e-21 Score=174.27 Aligned_cols=256 Identities=13% Similarity=0.057 Sum_probs=164.3
Q ss_pred chhhHHHHhhhhhh-hHHHHHHHHHHHHHHHHHh-hccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHh
Q psy15226 2 VGTLAILLIGNHVS-YNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 79 (362)
Q Consensus 2 ~G~~~~~~l~~~~~-Wr~~f~~~~~~~~~~~~~~-~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
+|++++..+....| ||+.|++.+++.++..++. +++||+|+....+++.++ +++ .+.+.++ ++.+
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~--~~~~ 236 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KND-YPDDYNE--KAEQ 236 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------ccc-ccccchh--hhhc
Confidence 45666666566678 9999999998888766654 458999864321111100 000 0000000 0000
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPL 158 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 158 (362)
+....+...++.++++..+.. .... +....+......+.|.++++ .|.+..+.+.......++.+++.++.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 237 ELTAKQIFMQYVLPNKLLWYI----AIAN-VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp --CCTHHHHHHTSSCHHHHHH----HHHH-HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHcCHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111113556665333222 2222 22222346677888999988 58988888899999999999999999999
Q ss_pred hhhc--CCchhhhhhhHhHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhH
Q psy15226 159 MDIL--GRKPLSCFSAALGC-LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS 235 (362)
Q Consensus 159 ~dr~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 235 (362)
+||+ |||+.+..+..+.. ++.+.+.. ....+.+.......+.+.+.....+..+.++.|.+|++.|+++.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 312 SDKVFRGNRGATGVFFMTLVTIATIVYWM------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHHTTS------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHH------hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 9999 99998877766655 44443322 111233333333444444333334444588999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 236 CASVALAF-GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 236 ~~~~~~~i-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
+.+....+ |..++|.+.+.+.+..|+...|++.+++.+++.++.++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999998898888887777665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.74 E-value=1.1e-16 Score=144.86 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhcc
Q psy15226 16 YNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 93 (362)
Q Consensus 16 Wr~~f~~~~~~~~~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
||+.|++.+++.++..+..++ .||+++. +++ ++ ++++.+.+++++++
T Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~--------------~~--------------~~~~~~~~~~~~~~ 256 (438)
T 3o7q_A 208 VQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS--------------DA--------------KQGSFSASLSRLAR 256 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC--------------CS--------------STTSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc--------------cc--------------cccchhhhHHHHHh
Confidence 999998888777766554333 6777531 000 00 01122234667777
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHH-hhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 94 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
+|..+...+..... .........+.|.+ +++. |.+..+.+.......++..++.++.|+++||+|||+.+..+
T Consensus 257 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 257 IRHWRWAVLAQFCY-----VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_dssp CSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 65444332222221 12235666788888 7776 88888888999999999999999999999999999999888
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 251 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~ 251 (362)
.++.+++.+.+.. . .. ........+.+.+.....+..+++..|.+|++ |+.+.++.. .+.+|+.++|.+
T Consensus 332 ~~~~~~~~~~~~~-------~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 332 ALIAMALCLISAF-------A-GG-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHH-------C-CH-HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------c-CC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 8888777766554 1 12 22233333333333444456668889999976 888888777 677999999999
Q ss_pred HHHHHHhhc-hhHHHHHHHHhhHhHHh
Q psy15226 252 HILITKSLG-QHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 252 ~~~~~~~~g-~~~~~~~~~~~~~i~~~ 277 (362)
.|.+.+..| ++..|.+.+++.++..+
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999998 88888776555544433
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=3.1e-18 Score=154.21 Aligned_cols=162 Identities=7% Similarity=-0.006 Sum_probs=110.3
Q ss_pred HHHhHHHHhhhc-C---CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 119 MITYSSTLLPKL-D---NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 119 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
...+.|.++.+. + .+....+....+..++..++.++.|+++||+|||+++..+..+.+++.+...+ ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------~~ 310 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------AT 310 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------CC
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------hc
Confidence 334456555442 2 11223345666677788899999999999999999888777777666544432 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
+....+....+.+.+.....+..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.++.|+...|.+.+++.+
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222222222222222222233357899999999999999995 788889999999999999988888888888888888
Q ss_pred hHHhhhheeeccCCC
Q psy15226 274 CSVVFNYFYLMETKQ 288 (362)
Q Consensus 274 i~~~~~~~~~~e~~~ 288 (362)
++.++.++..||+++
T Consensus 391 ~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 391 GFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHTTSSCCSCT
T ss_pred HHHHHHHhhhcCCCc
Confidence 777666566666543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.71 E-value=2e-17 Score=150.32 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=134.9
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.......+.|.+.++. .+..+.++..+...++..++.+++|+++||+|||+++..+.++.+++.+.+++.... ..
T Consensus 43 ~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~ 117 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA----TS 117 (451)
T ss_dssp HHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----HS
T ss_pred HHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc----cc
Confidence 3445667788888888 998999999999999999999999999999999999999999988888776541100 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 273 (362)
+.+..++...+.+.+.....+...++++|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|++.+++.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~ 197 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 197 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445555554433445555899999999999999999999999999999999999888898 9999999888887
Q ss_pred hHHhhhheeeccCCC
Q psy15226 274 CSVVFNYFYLMETKQ 288 (362)
Q Consensus 274 i~~~~~~~~~~e~~~ 288 (362)
+..++.++..||+++
T Consensus 198 ~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHCCCSST
T ss_pred HHHHHHHhhccCCHh
Confidence 776666666777543
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=2.5e-15 Score=138.09 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=109.7
Q ss_pred HHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh-----hhhHhHHHHHHHHHHHHHHhc-CC
Q psy15226 120 ITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-----FSAALGCLLTFSTGLFYLYQG-EL 192 (362)
Q Consensus 120 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~ 192 (362)
..+.|.+.++. +.+..+.+.......++..++.++.++++||+|||+... .+..+.+++.+.+........ ..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555553 555566778888888999999999999999999987655 555555555554433221110 01
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
..+.........+.+.+.....+..+.++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...+.+.++++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence 12333333334444444344455566899999999999999999999999999999999887754 46666788877777
Q ss_pred HhHHhhhheeeccCCC
Q psy15226 273 FCSVVFNYFYLMETKQ 288 (362)
Q Consensus 273 ~i~~~~~~~~~~e~~~ 288 (362)
+++.++.++..++.++
T Consensus 462 ~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 462 VVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666565555443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.63 E-value=7.4e-15 Score=132.86 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=125.4
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++...... ..+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~ 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----ccc
Confidence 456677788888889999999999999999999999999999999999999999999999988887732111 223
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-Hhhc--------------
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT-KSLG-------------- 260 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~-~~~g-------------- 260 (362)
.+..++...+.+.+.....+...++++|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 4444454555555543344445589999999999999999999999999999999999988 4444
Q ss_pred -----------hhHHHHHHHHhhHhHHhhh
Q psy15226 261 -----------QHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 261 -----------~~~~~~~~~~~~~i~~~~~ 279 (362)
|++.|++.++..++..++.
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888877776665554443
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=2e-15 Score=133.82 Aligned_cols=165 Identities=12% Similarity=0.101 Sum_probs=132.6
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.+..... +
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~ 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------S 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------c
Confidence 34556667788888889998889999999999999999999999999999999999999988888777651 1
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
+.+..+....+.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 23333343444444434344555689999999999999999999999999999999999998888999999988888777
Q ss_pred HHhhhheeeccCC
Q psy15226 275 SVVFNYFYLMETK 287 (362)
Q Consensus 275 ~~~~~~~~~~e~~ 287 (362)
..+...+..||++
T Consensus 167 ~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 167 VTFSMARWMPETR 179 (375)
T ss_dssp HHCCCCCSSCCCS
T ss_pred HHHHHHHHCcccC
Confidence 7665556677654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=1.9e-14 Score=132.17 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=125.2
Q ss_pred HHHHHHhHHHHhhh------cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHHHHHHHHHHHH
Q psy15226 116 ITSMITYSSTLLPK------LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 116 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
++....+.+.++++ .|.+..+.++..+...++..++++++|+++|| +|||+++..+.++.+++.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 45555666666654 68888889999999999999999999999999 89999999999998888877655
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy15226 189 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFF 266 (362)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~ 266 (362)
.++.+..++...+.+.+.....+...++++|.+|+++ |+.+.++.+....+|..++|.+.+.+.++.||++.|+
T Consensus 105 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 105 ----PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 2334444444555555443344555589999999988 7778888889999999999999999999999999999
Q ss_pred HHHHhhHhHHhhhhee
Q psy15226 267 IYSSVHFCSVVFNYFY 282 (362)
Q Consensus 267 ~~~~~~~i~~~~~~~~ 282 (362)
+.++..+++.+...+.
T Consensus 181 ~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8877766665554333
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.55 E-value=1.3e-13 Score=127.76 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=123.4
Q ss_pred HHHHHHhHHHHhh-hcC------CCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhHHHHHHHHHHHHH
Q psy15226 116 ITSMITYSSTLLP-KLD------NAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYL 187 (362)
Q Consensus 116 ~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 187 (362)
++....+++.++. +.| .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+.+.+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI--- 104 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence 3555666666654 458 8989999999999999999999999999999 9999999999888888877766
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHH---HHHHHHHHHHHHHHHHHHHHHhhchhHH
Q psy15226 188 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC---ASVALAFGSFITTKFHILITKSLGQHVI 264 (362)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~ig~~~~~~~~~~~~~~~g~~~~ 264 (362)
...+.+..++...+.+.+.....+...++++|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..
T Consensus 105 ----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 105 ----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp ----TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred ----hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 221333444444444444444445556899999999999876666 8888999999999999999988999999
Q ss_pred HHHHHHhhHhHHhhhhe
Q psy15226 265 FFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 265 ~~~~~~~~~i~~~~~~~ 281 (362)
|++.+++.+++.+...+
T Consensus 181 f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888777666555433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.53 E-value=2.1e-15 Score=133.66 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=138.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFI-LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+..|||+.|++.+++.++..+ ..+++||+|+. +++
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------- 184 (375)
T 2gfp_A 139 LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV---DAP------------------------------- 184 (375)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT---TCC-------------------------------
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC---Ccc-------------------------------
Confidence 3555555566667999999999998888777 44458998742 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+++.+.++++.+++|..+...+.. +...........+.|.+.++ .|.+..+.+.......++..++.++.+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (375)
T 2gfp_A 185 RTRLLTSYKTLFGNSGFNCYLLML-----IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPN 259 (375)
T ss_dssp CCCTTTCSTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHhcCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233456666653332222221 12222345667788888877 588877788888889999999999999999
Q ss_pred hhcCCchhhhhhhHh-HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 160 DILGRKPLSCFSAAL-GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 160 dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
||++++ +..+... ...+........ . ...+.+.......+.+.+.....+....+..|..| ++|+++.|+.+
T Consensus 260 ~r~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 260 KRFSTL--MWQSVICCLLAGLLMWIPDW-F---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp THHHHH--HHHHHHHHHHTSSSSSHHHH-H---HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhh-h---ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHH
Confidence 999873 2222222 111111111100 0 00122223333344444444445555688999998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy15226 239 VALAFGSFITTKFHILITKSLGQHVIFFI 267 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~~ 267 (362)
....+|..+++.+.+.+.+..++...+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998887777655554
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=1.3e-12 Score=119.96 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc----------CCCCcchHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG----------ELPNFQYIPYITTLLY 206 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 206 (362)
.++..+...++..+|++++|+++||+|||+++.++.++..++.++.++...... ....+....++..++.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 346677788999999999999999999999999999999999888764100000 0012333444555555
Q ss_pred HHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hchhHHHHHHHHhhHhHHhh
Q psy15226 207 AASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS--------LGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~i~~~~ 278 (362)
+.+.++..+...++++|..|++.|+...++.+....+|..+++.+....... .+|+..+.+..+..++. ++
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LM 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hh
Confidence 5554444555568999999999999999999988888888888777655443 23554444444444444 34
Q ss_pred hheeeccC
Q psy15226 279 NYFYLMET 286 (362)
Q Consensus 279 ~~~~~~e~ 286 (362)
..++.||+
T Consensus 216 ~~~~~peS 223 (491)
T 4gc0_A 216 LLYTVPES 223 (491)
T ss_dssp HGGGSCCC
T ss_pred hhhcCCCC
Confidence 44667886
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=4.7e-12 Score=117.26 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hhcCCc----hhhhhhhHhHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLM----DILGRK----PLSCFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYA 207 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~----dr~grr----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 207 (362)
.+.......++..++.++.+++. ||.|+| +.+..+..+.+++.+.+........ ....+.+.......+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44444444445555555555543 444332 3444555555555444322000000 00112333333344444
Q ss_pred HHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ch---------hHHHHHHHHhhHhHH
Q psy15226 208 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL--GQ---------HVIFFIYSSVHFCSV 276 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~--g~---------~~~~~~~~~~~~i~~ 276 (362)
.+.....+..++++.|..|++.||+++|+.+...++|+.+++.+.+.+.+.. +| ...|++.+++.+++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 4433444555688999999999999999999999999999999998876532 12 223666777777776
Q ss_pred hhhheeeccCCCC
Q psy15226 277 VFNYFYLMETKQK 289 (362)
Q Consensus 277 ~~~~~~~~e~~~~ 289 (362)
++.+++.++.+++
T Consensus 497 ~~~~~~~~~~~~~ 509 (524)
T 2xut_A 497 IVFALYARSYQMQ 509 (524)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHhccc
Confidence 6665555655443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.05 E-value=7.4e-11 Score=105.95 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=94.3
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.....++|.++++ .|.+..+.+...+...++..++++++|+++||+|||++++.+..+.+++...+....... .....
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-LLQYN 102 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455677887765 599989999999999999999999999999999999998877665544221111000000 00000
Q ss_pred chHHHHHHHHHHHHh-hcccccchhhcccCCCc--chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 196 QYIPYITTLLYAASY-YGIGCLPNILVSELFPI--NVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
. .......+... ....+.. ....+..++ +.|+.+.+.......+|..++|.+.+.+.+ .+|+..|++.++..
T Consensus 103 ~---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 103 I---LVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp C---CHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H---HHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 01111111111 1111111 222233222 355667777777788899999999988876 57888887666554
Q ss_pred HhHHhh
Q psy15226 273 FCSVVF 278 (362)
Q Consensus 273 ~i~~~~ 278 (362)
++..+.
T Consensus 178 ~~~~~~ 183 (417)
T 2cfq_A 178 LILAVL 183 (417)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 444333
No 15
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=98.13 E-value=3.9e-07 Score=66.91 Aligned_cols=51 Identities=33% Similarity=0.647 Sum_probs=30.3
Q ss_pred cccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccccc
Q psy15226 305 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIK 355 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (362)
.+++|.+++||+.++.++.|.+++.+||+.+++|++|++|++++.||....
T Consensus 42 ~~~eK~spyECGfdp~~~ar~~FsirFfLiAilFlIFDvEi~~L~Pwa~~~ 92 (147)
T 3rko_A 42 RARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSI 92 (147)
T ss_dssp HCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcccCCCcccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999987543
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=46.48 E-value=7.9 Score=17.70 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=10.9
Q ss_pred HHHHHhhhcCCchh
Q psy15226 154 LQAPLMDILGRKPL 167 (362)
Q Consensus 154 ~~g~l~dr~grr~~ 167 (362)
+.|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999854
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=36.64 E-value=76 Score=19.89 Aligned_cols=29 Identities=10% Similarity=-0.199 Sum_probs=14.2
Q ss_pred hchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 259 LGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 259 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
-||...+.+...+.+++.-..-..+||..
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~S 58 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQE 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhc
Confidence 34554444444444444444445677743
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.21 E-value=47 Score=16.86 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=6.0
Q ss_pred hhccCCChH
Q psy15226 34 FSFVPETPH 42 (362)
Q Consensus 34 ~~~lpesp~ 42 (362)
..+.+|+||
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 334688886
No 19
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.56 E-value=1.7e+02 Score=18.54 Aligned_cols=28 Identities=11% Similarity=-0.221 Sum_probs=13.9
Q ss_pred hchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 259 LGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 259 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
-||...+.+...+.+++.-..-..+||.
T Consensus 31 AG~AAv~fl~~~~~lv~l~~iG~~LPE~ 58 (82)
T 2nrg_A 31 AGWAGGVFFGTLLLIGFFRVVGRMLPIQ 58 (82)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHSSTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 3455444444444444444444567774
Done!