RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15226
(362 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 120 bits (304), Expect = 2e-30
Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 14/281 (4%)
Query: 25 ILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK---KDVMEEMNSIM-DKTQE 80
I + F+ F+PE+P + K +++ KSL RG K++++E+ I ++ E
Sbjct: 204 IPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIE 263
Query: 81 DLKSKTGYLELLTNKSN-RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ 139
+ + L ++ RR L + FQ+ GI +++ YS T+ +NA D
Sbjct: 264 KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF---ENAGVSTDH 320
Query: 140 CIL---VFMIIMFLSNFLQAPLMDILGRKP--LSCFSAALGCLLTFSTGLFYLYQGELPN 194
L + + F F+ L+D GR+P L + CL G +
Sbjct: 321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380
Query: 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 253
+ + LL+ A + G G +P ++VSE+FP+++R + S A A +FI
Sbjct: 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP 440
Query: 254 LITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 294
+ +S+G +F + ++ ++F YF+L ETK +TL EI
Sbjct: 441 TMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 112 bits (283), Expect = 9e-28
Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 11/281 (3%)
Query: 21 IALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGN---KKDVMEEMNSIMD 76
+ L +P I ++ F+PE+P + K L++ L RG +++ EE +S+
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLE- 231
Query: 77 KTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFG 136
+ K +LEL K+ R+ + + +FQ+L GI ++ YS T+ L +
Sbjct: 232 --RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD-- 287
Query: 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196
++ ++ F+ F+ L+D GR+PL AA + G+ L +
Sbjct: 288 SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG 347
Query: 197 YIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 255
+ + LL+ A + G G +P ++VSELFP+ VR +A + A+ A +F+ +I
Sbjct: 348 IVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Query: 256 TKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
T ++G +V F +++ + ++F +F++ ETK +TL EI E
Sbjct: 408 TGAIGGYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 78.3 bits (194), Expect = 6e-18
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
S+++ + REK+SPFECGFDP S R+ +SL FF IA+IFLIFD+EI L+ P I
Sbjct: 21 SLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI 78
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 73.7 bits (182), Expect = 2e-16
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
+++ K REK SP+ECGFDP+ K R+ +SL FF IA++FLIFD+EI L+ P ++
Sbjct: 11 FLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVV 68
>gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 73.7 bits (182), Expect = 3e-16
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
REK+SPFECGFDPIS R +SL FF +A++FL+FD+EI L+FP
Sbjct: 33 REKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFP 76
>gnl|CDD|214455 MTH00202, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 70.8 bits (174), Expect = 3e-15
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
REK+SPFECGFDP R+ +S+ FF +A+IFL+FDIEI L+ P PL+
Sbjct: 33 REKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80
>gnl|CDD|164588 MTH00012, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 117
Score = 70.7 bits (173), Expect = 4e-15
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
REKTSPFECGFDP RI +SL FF +A+IF++FDIEI L+ P P I
Sbjct: 33 REKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80
>gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 65.0 bits (159), Expect = 3e-13
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P+P
Sbjct: 31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP 75
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 116
Score = 65.0 bits (159), Expect = 3e-13
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353
EK+SP+ECGFDP++ R+ +S FF +A++FL+FD+EI L+FP P
Sbjct: 33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPP 78
>gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 64.6 bits (158), Expect = 5e-13
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +SL FF +A++FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77
>gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 115
Score = 63.4 bits (155), Expect = 1e-12
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A+ FL+FD+EI L+ P P
Sbjct: 32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 61.5 bits (150), Expect = 6e-12
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353
EK SP+ECGFDP+ R+ +SL FF +AL FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78
>gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 61.1 bits (149), Expect = 1e-11
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P P
Sbjct: 32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76
>gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 118
Score = 59.3 bits (144), Expect = 4e-11
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 303 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 358
KQ EK S +ECGFDP RI +S+ FF + ++FLIFD+EI+ +FP ++ +I
Sbjct: 32 KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87
>gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 113
Score = 59.3 bits (144), Expect = 4e-11
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
S KQ REK S +ECGFDP P +S+ FF I ++FLIFD+EI+ +FP
Sbjct: 21 SYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
>gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A;
Validated.
Length = 121
Score = 54.9 bits (133), Expect = 1e-09
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
REK SP+E GF+ R+ + + F+ +A++F+IFD+E +FP
Sbjct: 39 REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFP 82
>gnl|CDD|223908 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A)
[Energy production and conversion].
Length = 123
Score = 52.2 bits (126), Expect = 1e-08
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
EK SP+ECG P R+ +S+ ++ +A++F++FD+E+ +FP
Sbjct: 39 PEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFP 82
>gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 123
Score = 51.1 bits (122), Expect = 3e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
EK+S +ECGFDP K R +++ F + ++F+IFDIEI+ +FP ++
Sbjct: 42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIV 88
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 52.3 bits (126), Expect = 2e-07
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 29/282 (10%)
Query: 19 LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR--GNKKDVMEEMNSIMD 76
L +A+S+ +FF+L FVPE+P + ++ +++ K L+ KK E ++ ++
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE 304
Query: 77 KTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLD-NAY 134
K K + +L+L + R+ +M T+ Y L L L N Y
Sbjct: 305 KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLDLGNLGGNIY 358
Query: 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194
D + ++ + + L+D LGR+ S L G+ L +P
Sbjct: 359 L--DL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLA-------GVALLLLLFVP- 406
Query: 195 FQYIPYITTLLYAASYYGIGCLPNIL---VSELFPINVRCQASSCASVALAFGSFITTKF 251
+ ++ T L +GI ++ +EL+P VR S GS I+
Sbjct: 407 -VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFL 465
Query: 252 HILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 293
L K L + ++ + + + F L ETK L E
Sbjct: 466 VYLGEKWL--FLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 52.4 bits (126), Expect = 2e-07
Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 47/291 (16%)
Query: 28 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK--KDVMEEMNSIMDKTQEDLKSK 85
++F +L FVPETP + ++ ++ E L+ GN ++E+ +D ++
Sbjct: 205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRK----T 260
Query: 86 TGYLELLTNKSNRRAFTLV--MAASLFQRLGGITSMITYSSTLLPKL----DNAYFGPDQ 139
G +LL +V + S+FQ+ GI ++ Y+ + L D A
Sbjct: 261 GG--KLLMFG----VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA------ 308
Query: 140 CILVFMIIMFLSNFLQAPL----MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195
L+ II+ + N L +D GRKPL A + FS G + Q
Sbjct: 309 --LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP---- 362
Query: 196 QYIPYITTLLYAASY---YGIGCLPNILVSELFPINVRCQASSCASVAL--AFGSFITTK 250
+ ++ L Y A++ +G C +L+SE+FP +R +A + A VA F++
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCW--VLLSEIFPNAIRGKALAIA-VAAQWIANYFVSWT 419
Query: 251 FHILITKS-LGQH----VIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
F ++ S L H ++IY + + +F + ++ ETK KTL E++
Sbjct: 420 FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 111
Score = 46.8 bits (112), Expect = 9e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 309 KTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEI 345
K S FECGF+ + K + S+S+HFF I L+F+IFD+EI
Sbjct: 34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
>gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated.
Length = 129
Score = 43.9 bits (104), Expect = 1e-05
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 309 KTSPFECGFDPISKP-RISYSLHFFSIALIFLIFDIEITLIFP 350
K + +ECG +P+ +P RIS HF+ +AL+F++FD+EI +FP
Sbjct: 47 KLAIYECGPEPVKQPNRIS--SHFYIMALLFILFDVEIVFMFP 87
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 41.9 bits (99), Expect = 3e-04
Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 102 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ---CILVFMIIMFLSNFLQAPL 158
L++A + F G ++TY L + + + +F + L L L
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYL--QEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 159 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 218
D LGR+ L L L GL L L + + LL
Sbjct: 235 SDRLGRRRLLLLIGLLLAAL----GLLLLA---LAPSLALLLVALLLLGFGLGFAFPALL 287
Query: 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 278
L SEL P R AS + + G + L+ + G +F I +++ + +
Sbjct: 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Score = 37.3 bits (87), Expect = 0.011
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202
F + L + L L D GR+ + L L L + + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL-------FALGSLLLAFASSLWLL-LVG 93
Query: 203 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 262
L + L++E FP R +A S G+ + L+ +SLG
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153
Query: 263 VIFFIYSSVHFCSVVFNYFYLM 284
+F I + + + F L
Sbjct: 154 WLFLILAILGLLLALLLLFLLR 175
>gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated.
Length = 119
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 303 KQLRREKTSPFECGFDPISKPRIS--YSLHFFSIALIFLIFDIEITLIFP 350
K+ R K +ECG +P +P + + ++ A++F++FDIEI ++P
Sbjct: 31 KRYNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYP 80
>gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated.
Length = 122
Score = 37.0 bits (86), Expect = 0.003
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
K + +E G +P I + ++ AL+F+IFD+E ++P
Sbjct: 40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83
>gnl|CDD|176964 CHL00022, ndhC, NADH dehydrogenase subunit 3.
Length = 120
Score = 36.1 bits (84), Expect = 0.006
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
EK S +E G +P+ + + + ++ AL+F++FD+E ++P
Sbjct: 39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP 81
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 37.8 bits (88), Expect = 0.006
Identities = 36/211 (17%), Positives = 59/211 (27%), Gaps = 27/211 (12%)
Query: 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202
F + L+ L L D GR+ + L LL F+ GL L + +
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRV-----LLIGLLLFALGLLLLL--------FASSLW 86
Query: 203 TLLYAASYYGIGC-----LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257
LL G+G L+++ FP R +A S G+ + L+
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 258 SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGF 317
G F I + + + V L ++ K
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPPPESKRP---------KPAEEAPAPLVPAWK 197
Query: 318 DPISKPRISYSLHFFSIALIFLIFDIEITLI 348
+ P + L F + L
Sbjct: 198 LLLRDPVLWLLLALLLFGFAFFALLTYLPLY 228
Score = 30.5 bits (69), Expect = 1.3
Identities = 41/248 (16%), Positives = 75/248 (30%), Gaps = 39/248 (15%)
Query: 1 MVGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKW 59
+G L L+ + + + + L+IL ++ +L + +P P ++ L
Sbjct: 135 ALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL-- 192
Query: 60 YRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
+ L++A LF
Sbjct: 193 -----------------------------VPAWKLLLRDPVLWLLLALLLFGFAFFALLT 223
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179
+ L G + + ++ + L L D LGR+ AL L+
Sbjct: 224 YLPLYQEVLGLSALLAG--LLLGLAGLLGAIGRLLLGRLSDRLGRRRR--LLLALLLLIL 279
Query: 180 FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239
+ GL L E + + + L + N LVS+L P R AS +
Sbjct: 280 AALGLALLSLTESSLWLLVALL---LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNT 336
Query: 240 ALAFGSFI 247
A + G +
Sbjct: 337 AGSLGGAL 344
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 32.6 bits (75), Expect = 0.084
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 311 SPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITL 347
S FECGF +S +F + + F+IFD+EI+L
Sbjct: 39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISL 75
>gnl|CDD|227109 COG4768, COG4768, Uncharacterized protein containing a divergent
version of the methyl-accepting chemotaxis-like domain
[General function prediction only].
Length = 139
Score = 30.5 bits (69), Expect = 0.62
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 19 LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKT 78
L I+L+I+ + F +L ++ T LKK K ++E+ +
Sbjct: 4 LYISLAIIAIAFLVLVIYLIIT---------LKKVSK-----------TLDEVAKTLKGL 43
Query: 79 QEDLKSKTGYLELLTNKSNR 98
+ T E L +K+N
Sbjct: 44 TSQVDGITHETEELLHKTNT 63
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 30.9 bits (70), Expect = 1.0
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 20/183 (10%)
Query: 97 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDN-----AYFGPDQCILVFMIIMFLS 151
NRRAF +V+ + G T+++ + L N A + M +
Sbjct: 241 NRRAFIMVLGFTA----AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ 296
Query: 152 NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYY 211
+ A L D +GR+ +L L T L L P + + LL + Y
Sbjct: 297 PLIGA-LSDKIGRRTSMLCFGSLAALFTVPI-LSALQNVSSPYAAFGLVMCALLIVSFYT 354
Query: 212 GIGCLPNILVSELFPINVRCQA---SSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 268
I IL +E+FP VR S + AL GS ++ L KS+G FF Y
Sbjct: 355 SIS---GILKAEMFPAQVRALGVGLSYAVANALFGGS---AEYVALSLKSIGMETAFFWY 408
Query: 269 SSV 271
++
Sbjct: 409 VTL 411
>gnl|CDD|235621 PRK05842, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 295
Score = 30.0 bits (67), Expect = 2.0
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 45 AAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 91
A K+N K+T +SLK ++G KD ME +N MD + LK+ E+
Sbjct: 81 AMKSN-KETNESLKDFQGALKDTMENLNKGMD---DSLKANNALREV 123
>gnl|CDD|227786 COG5499, COG5499, Predicted transcription regulator containing HTH
domain [Transcription].
Length = 120
Score = 28.3 bits (63), Expect = 3.2
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 33 LFSFVPETPHFHAAKNNLKKTEKS---LKWYRGNKKDVMEEMNSIMDK---TQEDLK--- 83
LF PE P + ++ T K Y D +E + ++MD+ T DL
Sbjct: 24 LFDNDPENPLLELDRADILATLIEAYEFKHYPIAAPDPVEVIRTLMDQYGLTLADLANEI 83
Query: 84 -SKTGYLELLTNKSNRRAFTLVMAASLFQRLG 114
SK+ +L S RRA TL L QR G
Sbjct: 84 GSKSRVSNIL---SGRRALTLEHIKKLHQRFG 112
>gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases. Y-family DNA
polymerases are a specialized subset of polymerases that
facilitate translesion synthesis (TLS), a process that
allows the bypass of a variety of DNA lesions. Unlike
replicative polymerases, TLS polymerases lack
proofreading activity and have low fidelity and low
processivity. They use damaged DNA as templates and
insert nucleotides opposite the lesions. The active
sites of TLS polymerases are large and flexible to allow
the accomodation of distorted bases. Most TLS
polymerases are members of the Y-family, including Pol
eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is
found exclusively in bacteria. In eukaryotes, the
B-family polymerase Pol zeta also functions as a TLS
polymerase. Expression of Y-family polymerases is often
induced by DNA damage and is believed to be highly
regulated. TLS is likely induced by the
monoubiquitination of the replication clamp PCNA, which
provides a scaffold for TLS polymerases to bind in order
to access the lesion. Because of their high error
rates, TLS polymerases are potential targets for cancer
treatment and prevention.
Length = 343
Score = 28.9 bits (65), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 105 MAASLFQRLGGITSMITYSST-LLPKLDNAYFGPD-QCILV 143
+ + ++LGGIT+ I +S LL KL Y PD IL
Sbjct: 122 IKRHIAEQLGGITASIGIASNKLLAKLAAKYAKPDGLTILD 162
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 28.4 bits (64), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 146 IIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 182
+++FL L L L P S F+AAL CL T S
Sbjct: 186 LLLFLLAILINFLTSKL---PTSLFNAALQCLYTLSE 219
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 28.0 bits (63), Expect = 8.2
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIG--- 214
L D +GRK + S AL L + +T + + LL A G+G
Sbjct: 73 LADRIGRKRILIVSVALFGLFSLATAQAWDFPS-------------LLVARLLTGVGLGG 119
Query: 215 CLPNI--LVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI 267
LPN+ L SE +R A S + FG + + +L IF++
Sbjct: 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174
>gnl|CDD|176852 cd00680, RHO_alpha_C, C-terminal catalytic domain of the oxygenase
alpha subunit of Rieske-type non-heme iron aromatic
ring-hydroxylating oxygenases. C-terminal catalytic
domain of the oxygenase alpha subunit of Rieske-type
non-heme iron aromatic ring-hydroxylating oxygenase
(RHO) family. RHOs, also known as aromatic ring
hydroxylating dioxygenases, utilize non-heme Fe(II) to
catalyze the addition of hydroxyl groups to the aromatic
ring, an initial step in the oxidative degradation of
aromatic compounds. RHOs are composed of either two or
three protein components, and are comprised of an
electron transport chain (ETC), and an oxygenase. The
ETC transfers reducing equivalents from the electron
donor to the oxygenase component, which in turn
transfers electrons to the oxygen molecules. The
oxygenase components are oligomers, either (alpha)n or
(alpha)n(beta)n. The alpha subunits are the catalytic
components and have an N-terminal domain, which binds a
Rieske-like 2Fe-2S cluster, and a C-terminal domain
which binds the non-heme Fe(II). The Fe(II) is
co-ordinated by conserved His and Asp residues.
Oxygenases belonging to this family include the alpha
subunits of Pseudomonas resinovorans strain CA10
anthranilate 1,2-dioxygenase, Stenotrophomonas
maltophilia dicamba O-demethylase, Ralstonia sp. U2
salicylate-5-hydroxylase, Cycloclasticus sp. strain A5
polycyclic aromatic hydrocarbon dioxygenase, toluene
2,3-dioxygenase from Pseudomonas putida F1, dioxin
dioxygenase of Sphingomonas sp. Strain RW1, plant
choline monooxygenase, and the polycyclic aromatic
hydrocarbon (PAH)-degrading ring-hydroxylating
dioxygenase from Sphingomonas CHY-1. This group also
includes the C-terminal catalytic domains of MupW, part
of the mupirocin biosynthetic gene cluster in
Pseudomonas fluorescens, and Pseudomonas aeruginosa GbcA
(glycine betaine catabolism A). This family belongs to
the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC)
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket.
Length = 188
Score = 27.5 bits (61), Expect = 8.2
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 20 NIALSILPVIFFILFSFVPETP---------HFHAAKNNLKKTEKSLKWYRGNKKDVMEE 70
N+ + + P + FVP P + ++ ++ + L+ G + V++E
Sbjct: 89 NLMIGLYPDSLQ-VQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQVLDE 147
Query: 71 MNSIMDKTQEDLKS 84
+ ++ Q L+S
Sbjct: 148 DIELCERIQRGLRS 161
>gnl|CDD|150820 pfam10204, DuoxA, Dual oxidase maturation factor. DuoxA (Dual
oxidase maturation factor) is the essential protein
necessary for the final release of DUOX2 (an NADPH:O2
oxidoreductase flavoprotein) from the endoplasmic
reticulum. Dual oxidases (DUOX1 and DUOX2) constitute
the catalytic core of the hydrogen peroxide generator,
which generates H2O2 at the apical membrane of thyroid
follicular cells, essential for iodination of
thyroglobulin by thyroid peroxidases. DuoxA carries five
membrane-integral regions including a reverse
signal-anchor with external N-terminus (type III) and
two N-glycosylation sites. It is conserved from
nematodes to humans.
Length = 281
Score = 27.9 bits (62), Expect = 9.1
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 317 FDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKII 359
F P ++ ++ + I L+FL + LI P K ++
Sbjct: 2 FYPPNRTSFTFDVSLLVIILVFLTLALAFLLILPGIRGKSRLF 44
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 28.1 bits (63), Expect = 9.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 5 LAILLIGNHVSYNSLNIALSILPVIFFILFSFVPET 40
+I+LI S+N A+++L ++ F++F + T
Sbjct: 20 FSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFT 55
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.417
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,220,290
Number of extensions: 1753467
Number of successful extensions: 2943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2915
Number of HSP's successfully gapped: 93
Length of query: 362
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 264
Effective length of database: 6,590,910
Effective search space: 1740000240
Effective search space used: 1740000240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.8 bits)