RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15226
(362 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 4/200 (2%)
Query: 98 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAP 157
+ + A++F L + + L A ++ L
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307
Query: 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 217
+ D + R L+T +T ++++ P + I ++ YG L
Sbjct: 308 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP---TVDMICMIVIGFLIYGPVMLI 364
Query: 218 NILVSELFPINVRCQASS-CASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276
+ EL P A+ GS + G F + +V
Sbjct: 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424
Query: 277 VFNYFYLMETKQKTLAEIQE 296
+ ++ K++ +QE
Sbjct: 425 ILLIVVMIGEKRRHEQLLQE 444
Score = 39.3 bits (90), Expect = 6e-04
Identities = 24/217 (11%), Positives = 56/217 (25%), Gaps = 5/217 (2%)
Query: 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202
I S F+ + D + L + G + ++
Sbjct: 67 GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM----FVL 122
Query: 203 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL-ITKSLGQ 261
L + + R S + A G I +L +
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182
Query: 262 HVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGFDPIS 321
H ++ + +F + + +T Q E N + EK
Sbjct: 183 HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 242
Query: 322 KPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 358
+ + L ++ ++ + ++ SP +++
Sbjct: 243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 36.7 bits (83), Expect = 0.004
Identities = 19/207 (9%), Positives = 46/207 (22%), Gaps = 1/207 (0%)
Query: 90 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 149
+ K F L + G++ ++F + +
Sbjct: 206 SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT 265
Query: 150 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 209
L + ++ LL + + I L+
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325
Query: 210 YYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFITTKFHILITKSLGQHVIFFIY 268
+ ++ F + C + + +S+G + +
Sbjct: 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385
Query: 269 SSVHFCSVVFNYFYLMETKQKTLAEIQ 295
V + + F L +L Q
Sbjct: 386 GLVALGFTLISVFTLSGPGPLSLLRRQ 412
Score = 26.3 bits (56), Expect = 6.2
Identities = 18/199 (9%), Positives = 37/199 (18%), Gaps = 7/199 (3%)
Query: 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202
+ L L L D LG + + ++ +F + Y
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF-------IFGPLLQYNI 103
Query: 203 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 262
+ +G N + + S A +
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163
Query: 263 VIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGFDPISK 322
+ + + L K + + E P
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 323 PRISYSLHFFSIALIFLIF 341
Y + +F
Sbjct: 224 FLSLYVIGVSCTYDVFDQQ 242
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 126 LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF 185
+ + N + V F+ N P + A +LT G
Sbjct: 307 MRTLMTNTLMKDQPTLAV----TFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYP 362
Query: 186 YLYQGE 191
++ G+
Sbjct: 363 CVFYGD 368
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 130 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ 189
L+ V F+ N P + A +LT +G ++
Sbjct: 308 LNGTVVSKHPLKSV----TFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFY 363
Query: 190 GE 191
G+
Sbjct: 364 GD 365
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 26.9 bits (59), Expect = 3.7
Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 42 HFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 101
F+ A + + G E + +M + ++ ++ +
Sbjct: 86 LFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGT 145
Query: 102 TLVMAASLFQRL---GGITSMITYSSTLLPKLDNAYFGPDQCIL 142
A L + L G +++ + P++ + P +
Sbjct: 146 GSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVF 189
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.1 bits (57), Expect = 3.9
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 145 MIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTL 204
++ S + L S TF L Y Y L + L
Sbjct: 45 TVLACTSKMFEILFHRNSQHYTLDFLSPK-----TFQQILEYAYTATLQAKAED--LDDL 97
Query: 205 LYAASYYGIGCL 216
LYAA I L
Sbjct: 98 LYAAEILEIEYL 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.417
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,274,075
Number of extensions: 56792
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 13
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)