RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15227
(515 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 157 bits (399), Expect = 1e-42
Identities = 110/407 (27%), Positives = 196/407 (48%), Gaps = 20/407 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL---VVSNKIECLYI 113
+VS+ +G I +FAG L ++ GRK +LL+ +L + L L +
Sbjct: 47 LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL---AILLIGNHVSYN 170
R+ +G+ G +P++I EI+ +RGALGS+ G L I L N S +
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 171 S---LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGN---KKDVMEE 223
+ + L +P I ++ F+PE+P + K L++ L RG +++ EE
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEE 226
Query: 224 MNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL 283
+S+ + K +LEL K+ R+ + + +FQ+L GI ++ YS T+ L
Sbjct: 227 KDSLE---RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 284 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG 343
+ ++ ++ F+ F+ L+D GR+PL AA + G+ L
Sbjct: 284 GLSD--SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA 341
Query: 344 ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402
+ + + LL+ A + G G +P ++VSELFP+ VR +A + A+ A +F+
Sbjct: 342 KSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIG 401
Query: 403 KFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 449
+IT ++G +V F +++ + ++F +F++ ETK +TL EI E
Sbjct: 402 FLFPIITGAIGGYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 157 bits (398), Expect = 2e-42
Identities = 111/414 (26%), Positives = 193/414 (46%), Gaps = 27/414 (6%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-----CLPTWFLVVSNKIECL 111
+VS+ +G I +FAG L ++ GRK +LL+ ALL L + +E L
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS-VEML 130
Query: 112 YIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL--AILLIGNHVSY 169
+ R+ +GI G+A +P+++ EI+ +RGAL S+ G L G
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 170 NSLN----IALSILP-VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK---KDVM 221
N+L + L ++P + F+ F+PE+P + K +++ KSL RG K+++
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL 250
Query: 222 EEMNSIM-DKTQEDLKSKTGYLELLTNKSN-RRAFTLVMAASLFQRLGGITSMITYSSTL 279
+E+ I ++ E + + L ++ RR L + FQ+ GI +++ YS T+
Sbjct: 251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI 310
Query: 280 LPKLDNAYFGPDQCIL---VFMIIMFLSNFLQAPLMDILGRKP--LSCFSAALGCLLTFS 334
+NA D L + + F F+ L+D GR+P L + CL
Sbjct: 311 F---ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367
Query: 335 TGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVA 393
G + + + LL+ A + G G +P ++VSE+FP+++R + S A A
Sbjct: 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 394 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 447
+FI + +S+G +F + ++ ++F YF+L ETK +TL EI
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 79.4 bits (197), Expect = 4e-18
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
S+++ + REK+SPFECGFDP S R+ +SL FF IA+IFLIFD+EI L+ P I
Sbjct: 21 SLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI 78
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 74.9 bits (185), Expect = 2e-16
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
+++ K REK SP+ECGFDP+ K R+ +SL FF IA++FLIFD+EI L+ P ++
Sbjct: 11 FLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVV 68
>gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 74.1 bits (183), Expect = 3e-16
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
REK+SPFECGFDPIS R +SL FF +A++FL+FD+EI L+FP
Sbjct: 33 REKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFP 76
>gnl|CDD|214455 MTH00202, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 71.6 bits (176), Expect = 3e-15
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
REK+SPFECGFDP R+ +S+ FF +A+IFL+FDIEI L+ P PL+
Sbjct: 33 REKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80
>gnl|CDD|164588 MTH00012, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 117
Score = 70.7 bits (173), Expect = 7e-15
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
REKTSPFECGFDP RI +SL FF +A+IF++FDIEI L+ P P I
Sbjct: 33 REKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 116
Score = 65.8 bits (161), Expect = 4e-13
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506
EK+SP+ECGFDP++ R+ +S FF +A++FL+FD+EI L+FP P
Sbjct: 33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPP 78
>gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 64.6 bits (158), Expect = 7e-13
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P+P
Sbjct: 31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP 75
>gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 64.2 bits (157), Expect = 1e-12
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +SL FF +A++FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77
>gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 115
Score = 63.4 bits (155), Expect = 2e-12
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A+ FL+FD+EI L+ P P
Sbjct: 32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 68.6 bits (168), Expect = 2e-12
Identities = 104/429 (24%), Positives = 177/429 (41%), Gaps = 70/429 (16%)
Query: 67 LGNAISPIFAGILVEKIGRKTTLLLNALLCL--------PTWFLVVSNKIECLY-----I 113
+G I G + GR+ +L + A+L P + Y I
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI----LLIGNHVSY 169
R+ GI G+A P++I EI+ +IRG L S + G L + I
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 170 NSLN-------IALSILP-VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK--KD 219
+ LN A +P ++F +L FVPETP + ++ ++ E L+ GN
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 220 VMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLV--MAASLFQRLGGITSMITYSS 277
++E+ +D ++ G +LL +V + S+FQ+ GI ++ Y+
Sbjct: 246 ALQEIKHSLDHGRK----TGG--KLLMFG----VGVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 278 TLLPKL----DNAYFGPDQCILVFMIIMFLSNFLQAPL----MDILGRKPLSCFSAALGC 329
+ L D A L+ II+ + N L +D GRKPL A
Sbjct: 296 EIFKTLGASTDIA--------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 330 LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY---YGIGCLPNILVSELFPINVRCQA 386
+ FS G + Q + ++ L Y A++ +G C +L+SE+FP +R +A
Sbjct: 348 IGMFSLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGPVCW--VLLSEIFPNAIRGKA 401
Query: 387 SSCASVA-LAFGSFITTKFHILITKS-LGQH----VIFFIYSSVHFCSVVFNYFYLMETK 440
+ A A F++ F ++ S L H ++IY + + +F + ++ ETK
Sbjct: 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461
Query: 441 QKTLAEIQE 449
KTL E++
Sbjct: 462 GKTLEEMEA 470
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 62.2 bits (152), Expect = 4e-12
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506
EK SP+ECGFDP+ R+ +SL FF +AL FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 67.7 bits (166), Expect = 6e-12
Identities = 87/401 (21%), Positives = 156/401 (38%), Gaps = 35/401 (8%)
Query: 59 SWMV----SLLDLGNAISPIFAGILVEKIGRKTTLLLNAL-LCLPTWFLVVSNKIECLYI 113
+W V S +G + G L ++ GRK LLL+ L + S +
Sbjct: 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLV 185
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-SYNSL 172
RL +G+ G + + E R +G++ F +G + + L+ + + L
Sbjct: 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWL 245
Query: 173 NIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR--GNKKDVMEEMNSIMDK 230
+A+S+ +FF+L FVPE+P + ++ +++ K L+ KK E ++ ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305
Query: 231 TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLD-NAYF 288
K + +L+L + R+ +M T+ Y L L L N Y
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLDLGNLGGNIYL 359
Query: 289 GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348
D + ++ + + L+D LGR+ S L G+ L +P
Sbjct: 360 --DL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLA-------GVALLLLLFVP-- 406
Query: 349 QYIPYITTLLYAASYYGIGCLPNIL---VSELFPINVRCQASSCASVALAFGSFITTKFH 405
+ ++ T L +GI ++ +EL+P VR S GS I+
Sbjct: 407 VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466
Query: 406 ILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 446
L K L + ++ + + + F L ETK L E
Sbjct: 467 YLGEKWL--FLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 66.7 bits (163), Expect = 6e-12
Identities = 67/350 (19%), Positives = 123/350 (35%), Gaps = 44/350 (12%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL-NALLCLPTWFLVVSNKIECLYIAR 115
++ +++ LG A++ AG L ++ GR+ LL+ L L L+ ++ + L + R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 116 LFIGISKGVAYTAMPIFIGEISEHNIRG-ALGSIPSGFQ---MVGTLAILLIGNHVSYNS 171
+ G+ G + A I + RG ALG + +GF +G L L+ + + +
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRA 152
Query: 172 LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK 230
+ L+IL ++ +L + +P P ++ L
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL-------------------- 192
Query: 231 TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGP 290
+ L++A LF + L G
Sbjct: 193 -----------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAG- 240
Query: 291 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350
+ + ++ + L L D LGR+ AL L+ + GL L E +
Sbjct: 241 -LLLGLAGLLGAIGRLLLGRLSDRLGRRRR--LLLALLLLILAALGLALLSLTESSLWLL 297
Query: 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400
+ + L + N LVS+L P R AS + A + G +
Sbjct: 298 VALL---LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 36.2 bits (84), Expect = 0.032
Identities = 36/211 (17%), Positives = 59/211 (27%), Gaps = 27/211 (12%)
Query: 296 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 355
F + L+ L L D GR+ + L LL F+ GL L + +
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRV-----LLIGLLLFALGLLLLL--------FASSLW 86
Query: 356 TLLYAASYYGIGC-----LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410
LL G+G L+++ FP R +A S G+ + L+
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 411 SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGF 470
G F I + + + V L ++ K
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPPPESKRP---------KPAEEAPAPLVPAWK 197
Query: 471 DPISKPRISYSLHFFSIALIFLIFDIEITLI 501
+ P + L F + L
Sbjct: 198 LLLRDPVLWLLLALLLFGFAFFALLTYLPLY 228
Score = 33.6 bits (77), Expect = 0.25
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLN----ALLCLPTWFLVVSNKI 108
L+ ++ L L AI + G L +++GR+ LLL L L L ++
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293
Query: 109 ECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILL 162
L +A L +G G+ + A+ + +++ RG + + G+L L
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGL---YNTAGSLGGAL 344
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 65.4 bits (160), Expect = 1e-11
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC-LPTWFLVVSNKIECL 111
L+ Q +VS LG A+ + AG L ++ GR+ LLL LL L + L ++ + L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 112 YIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG----NHV 167
+ R +G+ G Y A I E RG + S +G L L+G +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 168 SYNSLNIALSILPVIFFILFSFVP 191
+ L + L+IL ++ +L F+
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL 174
Score = 48.1 bits (115), Expect = 6e-06
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL--CLPTWFLVVSNKIECLYIA 114
+ ++SL LG + + G+L +++GR+ LLL LL L L ++ + L +A
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271
Query: 115 RLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQ----MVGTLAILLIGNHVSYN 170
L +G G A+ A+ E++ RG + + F +G L L+ + Y
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 171 SLNIALSILPVIFFILFSFVP 191
+ + L+ L ++ +L +P
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
Score = 40.4 bits (95), Expect = 0.001
Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ---CILVFMIIMFLSNFLQAPL 311
L++A + F G ++TY L + + + +F + L L L
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYL--QEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 312 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 371
D LGR+ L L L GL L L + + LL
Sbjct: 235 SDRLGRRRLLLLIGLLLAAL----GLLLLA---LAPSLALLLVALLLLGFGLGFAFPALL 287
Query: 372 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431
L SEL P R AS + + G + L+ + G +F I +++ + +
Sbjct: 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Score = 36.1 bits (84), Expect = 0.039
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 296 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 355
F + L + L L D GR+ + L L L + + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL-------FALGSLLLAFASSLWLL-LVG 93
Query: 356 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415
L + L++E FP R +A S G+ + L+ +SLG
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153
Query: 416 VIFFIYSSVHFCSVVFNYFYLM 437
+F I + + + F L
Sbjct: 154 WLFLILAILGLLLALLLLFLLR 175
>gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 61.1 bits (149), Expect = 2e-11
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P P
Sbjct: 32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76
>gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 113
Score = 59.7 bits (145), Expect = 5e-11
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
S KQ REK S +ECGFDP P +S+ FF I ++FLIFD+EI+ +FP
Sbjct: 21 SYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
>gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 118
Score = 59.3 bits (144), Expect = 7e-11
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 456 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 511
KQ EK S +ECGFDP RI +S+ FF + ++FLIFD+EI+ +FP ++ +I
Sbjct: 32 KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87
>gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A;
Validated.
Length = 121
Score = 54.5 bits (132), Expect = 3e-09
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
REK SP+E GF+ R+ + + F+ +A++F+IFD+E +FP
Sbjct: 39 REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFP 82
>gnl|CDD|223908 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A)
[Energy production and conversion].
Length = 123
Score = 51.8 bits (125), Expect = 3e-08
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
EK SP+ECG P R+ +S+ ++ +A++F++FD+E+ +FP
Sbjct: 39 PEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFP 82
>gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 123
Score = 51.5 bits (123), Expect = 5e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
EK+S +ECGFDP K R +++ F + ++F+IFDIEI+ +FP ++
Sbjct: 42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIV 88
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 111
Score = 48.0 bits (115), Expect = 4e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 462 KTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEI 498
K S FECGF+ + K + S+S+HFF I L+F+IFD+EI
Sbjct: 34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
>gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated.
Length = 129
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 462 KTSPFECGFDPISKP-RISYSLHFFSIALIFLIFDIEITLIFP 503
K + +ECG +P+ +P RIS HF+ +AL+F++FD+EI +FP
Sbjct: 47 KLAIYECGPEPVKQPNRIS--SHFYIMALLFILFDVEIVFMFP 87
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 41.9 bits (99), Expect = 1e-04
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 59 SWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC-LPTWFLVVSNKIECLYIARLF 117
+++ LG I +G+L ++ GRK LL+ + L T +S+ I L IAR
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 118 IGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLN 173
G A A I +I RG + S +G L +G + + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 174 IALSILPVIFFILFSFV-PET 193
+ L+IL + FIL +F+ PET
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
>gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated.
Length = 119
Score = 39.3 bits (92), Expect = 6e-04
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 456 KQLRREKTSPFECGFDPISKPRIS--YSLHFFSIALIFLIFDIEITLIFP 503
K+ R K +ECG +P +P + + ++ A++F++FDIEI ++P
Sbjct: 31 KRYNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYP 80
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 41.2 bits (97), Expect = 8e-04
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
Query: 28 WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-RK 86
W A+ + ++ + D + L+ QL +V++ L A+ I G LV+K G R
Sbjct: 17 WFAFSPLAVQMIKD--------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY 68
Query: 87 TTLLLNALLCLPT-WFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRG-- 143
TT L LL +P W + L + RLFIGI+ G + MP +I I+G
Sbjct: 69 TTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMP-WISFFFPKKIQGTA 127
Query: 144 -----ALGSIPSGF-QMVGTLAILLIGNHVSYN-------SLNIALSILP-VIFFILFSF 189
G++ G Q V I + + I + + + ++F
Sbjct: 128 LGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187
Query: 190 VPETP 194
+TP
Sbjct: 188 GADTP 192
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 40.3 bits (95), Expect = 0.002
Identities = 79/370 (21%), Positives = 121/370 (32%), Gaps = 99/370 (26%)
Query: 74 IFAGILVEKIGRKTTLLLNALL---------CLPT------WFLVVSNKIECLYIARLFI 118
I G ++IGRK TL++ L+ LP+ W ++ L +ARL
Sbjct: 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL------LLLARLIQ 106
Query: 119 GISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALS- 177
G S G + +++ E + RG GS VG L L +SY + AL
Sbjct: 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLE 166
Query: 178 -----------ILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 226
+L +I L + ETP F A+ KK +
Sbjct: 167 WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIA--------------- 211
Query: 227 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS---MITYSSTLLPKL 283
E LT +R+ F L + + T+ + TY T L +
Sbjct: 212 ----------------ETLTK--HRKPFLLGL----GLVIATTTTFYLITTYLPTYLTQ- 248
Query: 284 DNAYFGPDQCILVFMIIMFLSNFLQ---APLMDILGRKPLSCFSAALGCLLTFSTGLFYL 340
+ +LV M+ + L L D +GR+P+ L+ F+ L
Sbjct: 249 -TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV---------LIIFTVLAALL 298
Query: 341 YQGELPNFQYIPYITTLLYA--------ASYYGIGCLPNILVSELFPINVRCQASSCA-S 391
L T + Y G + ELFP VR +S A +
Sbjct: 299 AVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGP---MGSFLPELFPTEVRYTGASLAYN 355
Query: 392 VALAFGSFIT 401
+A A
Sbjct: 356 LAGAIFGGFA 365
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 39.2 bits (92), Expect = 0.004
Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 18 ASISLLIAGC-WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFA 76
++++ + W + + + L++ Q +V++ L A+ +
Sbjct: 19 STLAFDVGFMVWTLFSPLGV---------FIKSDFGLSEGQKGLLVAIPILVGALLRLPY 69
Query: 77 GILVEKIG-RKTTLLLNALLCLPTW---FLVVSNKIECLYIARLFIGISKGVAYTAMPIF 132
G L ++ G RK T+L LL +P F V L + L +G++ MP
Sbjct: 70 GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-N 128
Query: 133 IGEISEHNIRG------ALGSIPSGF-QMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
+G G++ Q+V L + G N I + L + +
Sbjct: 129 ASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188
Query: 186 LFSFVPETPHFHAAKNNLKKTE 207
+ + + P A+ +
Sbjct: 189 AWLGMNDVPEHRASVKPQLPAQ 210
>gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated.
Length = 122
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
K + +E G +P I + ++ AL+F+IFD+E ++P
Sbjct: 40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 38.7 bits (91), Expect = 0.006
Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 60 WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV-VSNKIECLYIARLFI 118
+++ LG A+ +L ++ R+ LL L + + L ++ L +AR
Sbjct: 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111
Query: 119 GISKGVAY-TAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILL-------IGNHVSYN 170
G++ GV + A + + AL + +G TLA +L +G +
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGL----TLATVLGVPLGTFLGQLFGWR 167
Query: 171 SLNIALSILPVI-FFILFSFVPETPHFHAAKNNLKKTEKSLK 211
+ +A+++L ++ +L+ +P + + L+ + L+
Sbjct: 168 ATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLR 209
>gnl|CDD|176964 CHL00022, ndhC, NADH dehydrogenase subunit 3.
Length = 120
Score = 35.7 bits (83), Expect = 0.010
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
EK S +E G +P+ + + + ++ AL+F++FD+E ++P
Sbjct: 39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP 81
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 33.7 bits (78), Expect = 0.060
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 464 SPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITL 500
S FECGF +S +F + + F+IFD+EI+L
Sbjct: 39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISL 75
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 35.4 bits (81), Expect = 0.083
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 46 LENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL-VV 104
L++IG N+ S +L +G A+S + G L ++ GR+ ++ ++ L +
Sbjct: 71 LQDIGQSENQGLFS---TLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCT 127
Query: 105 SNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG 164
+NK L A +G++ G A A P+FIGE+ + + I S + A G
Sbjct: 128 ANKFNTLLAAMTLLGVAAGPA-GASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFG 186
Query: 165 NHVSYNS-------LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKW 212
++ + I +S + V+ I++ P H K + L W
Sbjct: 187 QRLAIQGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQLHGKKARKRDELAKLDW 241
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 34.5 bits (80), Expect = 0.12
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 54 NKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTW---FLVVSNKIEC 110
N S ++ + + + L ++ G+K T LL LL F + +
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314
Query: 111 LYIARLFIGISKGVAYTAMPIFIGEISEHN 140
+ + GI G+A + ++ ++
Sbjct: 315 FLVLVVLAGIGLGLATLLPWAMLADVVDYG 344
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 33.6 bits (77), Expect = 0.27
Identities = 80/369 (21%), Positives = 137/369 (37%), Gaps = 62/369 (16%)
Query: 77 GILVEKIGRKTTLLLNALL---------CLPTWFLVVSNKIECLYIARLFIGISKGVAYT 127
G + +K GRK ++L++ + CLP + + + L +ARLF G+S G Y
Sbjct: 84 GRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143
Query: 128 AMPIFIGEISEHNIRGALGSIPS----GFQMVGTLAILLIGNHVSYNSLNIALSILPVIF 183
++ E++ +G S G Q++ L ++++ + L +P
Sbjct: 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFAL 203
Query: 184 FILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLE 243
+ + V W R +++ + LK + G L+
Sbjct: 204 GAVLAVVA-------------------LWLR-------RQLDETSQQETRALK-EAGSLK 236
Query: 244 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDN-----AYFGPDQCILVFM 298
L NRRAF +V+ + G T+++ + L N A
Sbjct: 237 GLWR--NRRAFIMVLGFTA----AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALF 290
Query: 299 IIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLL 358
+ M + + A L D +GR+ +L L T L L P + + LL
Sbjct: 291 VFMLIQPLIGA-LSDKIGRRTSMLCFGSLAALFTVPI-LSALQNVSSPYAAFGLVMCALL 348
Query: 359 YAASYYGIGCLPNILVSELFPINVRCQA---SSCASVALAFGSFITTKFHILITKSLGQH 415
+ Y I IL +E+FP VR S + AL GS ++ L KS+G
Sbjct: 349 IVSFYTSIS---GILKAEMFPAQVRALGVGLSYAVANALFGGS---AEYVALSLKSIGME 402
Query: 416 VIFFIYSSV 424
FF Y ++
Sbjct: 403 TAFFWYVTL 411
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 33.4 bits (76), Expect = 0.27
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 63 SLLDLGNAISPIFAGILVEKIGRKTTLLLNAL-LCLPTWFLVVSNKIECLYIARLFIGIS 121
S+ L +AI+ F G L ++ GRK LL +AL + + + ++ I I R +G+
Sbjct: 61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL 120
Query: 122 KGVAYTAMPIFIGEISEHNIRGALGSIPSGF---QMVGTLAILLIGNHVSYNSL-NIALS 177
G A + ++ + ALG++ +G ++G LA L+ + + I S
Sbjct: 121 GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180
Query: 178 ILPVIFFILFSFVPE 192
+L + F + + E
Sbjct: 181 VLFLCFLVTLFCIRE 195
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 33.4 bits (77), Expect = 0.32
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-CLPTWFLVVSNKIECLYIAR 115
+S + L+ G IS L+E I K L+ L L L+ S+ + IA
Sbjct: 43 SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAM 102
Query: 116 LFIGISKGVAYTAMPIFIGEISEHNIRGA-LGSIPSGFQMVGTL----AILLIGNHVSYN 170
+G+ G+ + I + E RG+ L S F M G + A L+ + +
Sbjct: 103 FVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162
Query: 171 SLNIALSILPVIFFIL 186
+ + ++ V FIL
Sbjct: 163 WVYACIGLVYVAIFIL 178
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 33.0 bits (76), Expect = 0.39
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS------N 106
L+ Q+ W S LG + G L ++IGRK L+++ L F + S
Sbjct: 47 LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL-----FGLFSLATAQAW 101
Query: 107 KIECLYIARLFIGISKGVAYTAMPIFIGEISE---HNIRG-ALG----SIPSGFQMVGTL 158
L +ARL G+ G A+P I SE +RG A+ +P G + +
Sbjct: 102 DFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 159 AILLIGN----HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTE 207
+L G+ H+ Y L ++P+ L ++PE+ F A K+
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPL----LMRWLPESRAFAQAAGAGKQRA 207
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 32.7 bits (75), Expect = 0.45
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 56 YQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-CLPTWFLVVSNKIECLYIA 114
Q+ W+++ L NAIS G L ++ G + L++ L + V+ +E + I
Sbjct: 37 SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIF 96
Query: 115 RLFIGISKG 123
R+ G G
Sbjct: 97 RVIQGFGGG 105
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 32.6 bits (74), Expect = 0.52
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 60 WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIE---CLYIARL 116
+ ++ LG + F G L +K+GRK LL+ L + +F S+ ++ RL
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC--LSVNGFFAFFSSFVQGYGFFLFCRL 263
Query: 117 FIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL-------AIL-------L 162
G G A + + E RG S F M+G + AI+
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 163 IGNHVSYNSLNIALSI--LPVIFFIL-FSFVPETPHF 196
+G+ ++S + + + P +F I +F+PE+P F
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 32.4 bits (74), Expect = 0.54
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 8/151 (5%)
Query: 64 LLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV-VSNKIECLYIARLFIGISK 122
LL +G A+S G+L +K G + +L +L + +++ + LY+
Sbjct: 46 LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105
Query: 123 GVAY-TAMPIFIGEISEHNIRGALGSIPSGFQMVGTLA----ILLIGNHVSYNSLNIALS 177
G+AY A+ + + RG I G +G+ I + N + I +
Sbjct: 106 GIAYGIALNTAVKWFPDK--RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMG 163
Query: 178 ILPVIFFILFSFVPETPHFHAAKNNLKKTEK 208
I+ ++ +L +F+ P K N++ + K
Sbjct: 164 IIFLLVIVLGAFLIGYPPGQLIKTNIEVSVK 194
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 31.9 bits (73), Expect = 0.77
Identities = 66/344 (19%), Positives = 126/344 (36%), Gaps = 49/344 (14%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-CLPTWFLVVSNKIECLYIAR 115
Q ++ S G + G L+++ G + TL + ++ + T + LYI R
Sbjct: 30 QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR 89
Query: 116 LFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI----LLIGNHVSYNS 171
+ +G ++ + + + + + R SI + Q +G + I H S+
Sbjct: 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149
Query: 172 LNIALSILPVIF-FILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK 230
I +L +I+ + F+P+ P A L + EK + V+ + +
Sbjct: 150 AFIIEGVLGIIWGVLWLKFIPDPP-QKAKW--LTEEEKYI---------VVGGLLAEQQG 197
Query: 231 TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK------LD 284
K ELL ++ +A F G+ +T+ T L + L+
Sbjct: 198 KGPSTPKKYQIKELLKDRR-----VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE 252
Query: 285 NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP----LSCFSAALGCL-LTFSTGLFY 339
+ + I+ F+ L L D+L R+ + +A + L L+
Sbjct: 253 AGFMA-----SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT- 306
Query: 340 LYQGELPNFQYIPYITTLLYAASYYG--IGCLPNILVSELFPIN 381
N+ IPY L A ++G G + L+S+ P N
Sbjct: 307 -------NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGN 343
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.8 bits (72), Expect = 0.81
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%)
Query: 22 LLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVE 81
L++ + P D P + L+ + ++ +V ++G + G L +
Sbjct: 246 LVLFANLYSHPI------QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGD 299
Query: 82 KIGRKTTLLLNALL--CLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISEH 139
+GR+ + + L L + + L + F + + +P +GE
Sbjct: 300 WLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT 359
Query: 140 NIRGALGSIPSGFQMVGTLAILLIGNHV--SYNSLNIALSIL 179
+ R A +G +IG + + AL+ L
Sbjct: 360 DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401
Score = 31.8 bits (72), Expect = 0.99
Identities = 61/303 (20%), Positives = 103/303 (33%), Gaps = 49/303 (16%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK----TTLLLNALLCLPTWFLVVSNKI 108
L + ++S + + G+ ++ GR+ T+++L + L F +
Sbjct: 44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF---APGY 100
Query: 109 ECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGAL-GSIPSGFQMVGTLAI---LLIG 164
++IARL IGI G Y + ++ E ++R G + SG+ + +A L+
Sbjct: 101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160
Query: 165 N--HVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGN----K 217
+ +L +SILP+IF + +PE + + G
Sbjct: 161 PVWGDGWRAL-FFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA 219
Query: 218 KDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSS 277
VM + M ++ YL +L V+ A+L
Sbjct: 220 NIVMTLAAA-MVQSAGKRWPTFVYLVVL-----------VLFANL---------YSHPIQ 258
Query: 278 TLLPKLDNAYFGPDQCILVFMIIMFLSNFLQA-------PLMDILGRKPLSCFSAALGCL 330
LLP A G I+ SN L D LGR+ S G L
Sbjct: 259 DLLPTYLKADLGLSP--HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316
Query: 331 LTF 333
L
Sbjct: 317 LII 319
>gnl|CDD|227109 COG4768, COG4768, Uncharacterized protein containing a divergent
version of the methyl-accepting chemotaxis-like domain
[General function prediction only].
Length = 139
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 172 LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKT 231
L I+L+I+ + F +L ++ T LKK K ++E+ +
Sbjct: 4 LYISLAIIAIAFLVLVIYLIIT---------LKKVSK-----------TLDEVAKTLKGL 43
Query: 232 QEDLKSKTGYLELLTNKSNR 251
+ T E L +K+N
Sbjct: 44 TSQVDGITHETEELLHKTNT 63
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 31.1 bits (71), Expect = 1.4
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 68 GNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV---SNKIECLYIARLFI-GISKG 123
G I + AG+L++K+G K ++L LL L S+K ++ LFI G
Sbjct: 60 GYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIG 119
Query: 124 VAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165
+ TA ++ + + ++ F +G + L+G+
Sbjct: 120 LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161
>gnl|CDD|236955 PRK11679, PRK11679, lipoprotein; Provisional.
Length = 346
Score = 30.7 bits (70), Expect = 1.7
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 28 WIAWPSVMIKRLTDENPDLEN---IGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG 84
W+ W DE+ I ++ YQ + V LLDL P+ ++
Sbjct: 146 WVTWNR------ADEDVQYRGRYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQ--- 196
Query: 85 RKTTLLLNAL 94
R T +LN +
Sbjct: 197 RYNTEMLNLI 206
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 30.4 bits (69), Expect = 2.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 46 LENIGIRLN--KYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-CLPTWFL 102
L I LN + QL S+ G A + +FAG + ++ GRK + A L + +
Sbjct: 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85
Query: 103 VVSNKIECLYIARLFIGISKGVAY 126
++ R GI G Y
Sbjct: 86 SLAETSSLFLAGRFLQGIGAGCCY 109
>gnl|CDD|235621 PRK05842, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 295
Score = 30.0 bits (67), Expect = 2.5
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 198 AAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 244
A K+N K+T +SLK ++G KD ME +N MD + LK+ E+
Sbjct: 81 AMKSN-KETNESLKDFQGALKDTMENLNKGMD---DSLKANNALREV 123
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 29.6 bits (67), Expect = 4.2
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 60 WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS--NKIECLYIARLF 117
L + G I I G L +++G + T LL LL LV S L +
Sbjct: 290 GGA-LFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTLFSPTLLLLLGAI 347
Query: 118 IGISKGVAYTAMPIFIGEISEHNIRG 143
G + + + IR
Sbjct: 348 AGFFVNGGQSGLYALMALFYPTAIRA 373
>gnl|CDD|227786 COG5499, COG5499, Predicted transcription regulator containing HTH
domain [Transcription].
Length = 120
Score = 28.3 bits (63), Expect = 4.8
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 186 LFSFVPETPHFHAAKNNLKKTEKS---LKWYRGNKKDVMEEMNSIMDK---TQEDLK--- 236
LF PE P + ++ T K Y D +E + ++MD+ T DL
Sbjct: 24 LFDNDPENPLLELDRADILATLIEAYEFKHYPIAAPDPVEVIRTLMDQYGLTLADLANEI 83
Query: 237 -SKTGYLELLTNKSNRRAFTLVMAASLFQRLG 267
SK+ +L S RRA TL L QR G
Sbjct: 84 GSKSRVSNIL---SGRRALTLEHIKKLHQRFG 112
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 29.5 bits (67), Expect = 5.2
Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 33/158 (20%)
Query: 60 WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC---------------LPTWFLVV 104
++SL L +S AG + +G K ++ C P L++
Sbjct: 55 LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLL 114
Query: 105 SNKIECLYIARLFIGISKGVAYTAMPIF-IGEI-SEHNIRGALGSIP-SGFQMVGTLAI- 160
L + RL +GI + +A T ++ IG + + H R I +G G LAI
Sbjct: 115 ------LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGR----VISWNGIATYGALAIG 164
Query: 161 ----LLIGNHVSYNSLNIALSILPVIFFILFSFVPETP 194
+L+ + L + + +L ++ +L P P
Sbjct: 165 APLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP 202
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 28.5 bits (64), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 111 LYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGS 147
L + ++ G S G YT IF+ E S RG +GS
Sbjct: 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157
>gnl|CDD|236866 PRK11162, mltA, murein transglycosylase A; Provisional.
Length = 355
Score = 28.3 bits (64), Expect = 9.8
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 42 ENPDLENIGIRLNKYQLSWMVSLLDLGNAI 71
E P L+N G KY+L MV+ LD+G AI
Sbjct: 295 EVPLLDNNGKFTGKYELRLMVA-LDVGGAI 323
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,213,575
Number of extensions: 2611930
Number of successful extensions: 3943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3867
Number of HSP's successfully gapped: 144
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)