RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15227
(515 letters)
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 147
Score = 64.7 bits (158), Expect = 1e-12
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
R K PFE G D + R+ S F+ +A+ F+IFD+E +F
Sbjct: 44 RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFA 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 2e-11
Identities = 80/425 (18%), Positives = 124/425 (29%), Gaps = 122/425 (28%)
Query: 29 IAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT 88
I W + +K LE L K + + S I I +
Sbjct: 184 IFW--LNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRR 236
Query: 89 LLLNALL--CLPTWFLV---VSNK-------IEC--LYIARLFIGISKGVAYTAMPIFIG 134
LL + CL LV V N + C L R K V
Sbjct: 237 LLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAATTT 287
Query: 135 EIS-EHNIRG------------ALGSIPSGF--QMVGT--LAILLIG------------- 164
IS +H+ L P +++ T + +I
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 165 NHVSYNSLN--IALSI--L-PVIF---FILFSFVPETPHFHAAKNNLKKTEKSLK--WYR 214
HV+ + L I S+ L P + F S P + L W+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---------SAHIPTILLSLIWFD 398
Query: 215 GNKKDVMEEMNSIMDKT--QEDLKSKT-----GYLELLTNKSNRRAFTLVMAASLFQRLG 267
K DVM +N + + ++ K T YLEL N A + S+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRSIVDHY- 453
Query: 268 GITSMITYSSTLLPKLDNAYF-----------GPDQCILVFMIIMFLS-NFLQAPLMDIL 315
I + P LD YF + + +F ++ FL FL+ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKI---- 507
Query: 316 GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI----PYITTLLYAASYYGIGCLPN 371
R + ++A+ L T FY YI P L+ A + N
Sbjct: 508 -RHDSTAWNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 372 ILVSE 376
++ S+
Sbjct: 559 LICSK 563
Score = 34.4 bits (78), Expect = 0.098
Identities = 81/539 (15%), Positives = 156/539 (28%), Gaps = 193/539 (35%)
Query: 32 PSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAI---SPIFAGILVE---KIGR 85
PS+M + ++ L N KY +S + L L A+ P +L++ G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGVLGSG- 162
Query: 86 KTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMP--IF---IGEISEHN 140
KT + L+ L S K++C M IF + +
Sbjct: 163 KTWVALDVCL---------SYKVQC-----------------KMDFKIFWLNLKNCNSPE 196
Query: 141 IRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAK 200
+ +M+ L + N S + + + + H+ +
Sbjct: 197 ---------TVLEMLQKLLYQIDPNWTSRSDHSSNIKL----------------RIHSIQ 231
Query: 201 NNLKKTEKSLKWYRGNKKDVMEEMNS--IMDKTQE-------DLKSKTGYLELLTNKSNR 251
L++ KS K Y N ++ Q +L K LLT
Sbjct: 232 AELRRLLKS-KPYE----------NCLLVLLNVQNAKAWNAFNLSCKI----LLT----- 271
Query: 252 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAY--FGPDQCILVFMIIMFLSNFLQA 309
T R +T ++ ++T LD+ PD+ + +L
Sbjct: 272 ---T---------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------LKYLDC 313
Query: 310 PLMD----ILGRKPLSCFSAALGCLLT--FSTGLFYLYQG--ELPNF--QYIPYITTLLY 359
D +L P + + + +T + + +L + + Y
Sbjct: 314 RPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 360 AASYYGIGCLP---NILVSELFPINVRC---QASSCASVALAFGSFITTKFHILITKSL- 412
+ + P +I P + + V + + K H SL
Sbjct: 372 RKMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMV-----VVNKLH---KYSLV 417
Query: 413 GQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGFDP 472
+ S+ + + ++ K + + SI++ + + FD
Sbjct: 418 EKQPKESTI-SIP------SIYLELKVKLENEYALHRSIVDHYNIPK---------TFDS 461
Query: 473 --ISKPR--------ISYSLHFFSIAL---------IFLIFDIEITLIFPSPLIKQKII 512
+ P I + H +I +FL F F ++QKI
Sbjct: 462 DDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFR------F----LEQKIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 4e-10
Identities = 80/486 (16%), Positives = 129/486 (26%), Gaps = 207/486 (42%)
Query: 175 ALSILPVIFFIL------FSF-VPETPHFHAAKNNLKKT-EKSL-KWYRGNKKDVMEEMN 225
A S P L VP F A++ L++ K L + G D +E
Sbjct: 3 AYSTRP---LTLSHGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAAD--DEPT 55
Query: 226 SIMDKTQEDLKSK-TGYLELLTNKSNRRAFTLVMAASL--FQR--LGG------ITSMIT 274
+ +L K GY+ L S F V+ L F+ L G ++
Sbjct: 56 T-----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 275 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334
+ T L K + N++ A + R ++AL
Sbjct: 111 ENDTTLVKTKE----------------LIKNYITA--RIMAKRPFDKKSNSAL--FRAVG 150
Query: 335 TGLFYLY-----QG-------ELPNFQ--YIPYITTLLYAAS---------------YYG 365
G L QG EL + Y + L+ ++ +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 366 IGC-----------------LPNILVSELFPINVRCQ----------------------- 385
G L +I +S P+ Q
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 386 -ASSCAS---VALAFGSFIT-TKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL---- 436
A+ + A+A + F + + K++ V+FFI V C + L
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFFI--GVR-CYEAYPNTSLPPSI 323
Query: 437 --------------M--------ETKQKTLAE----------IQESIMNSHKQ------- 457
M E Q + + ++ S++N K
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 458 ---------LRREKTSPFECGFD----PIS--KPRISYSLHFFSIALIFLIFDIEITLIF 502
LR+ K G D P S K + S FL + F
Sbjct: 384 QSLYGLNLTLRKAKAPS---GLDQSRIPFSERKLKFSNR---------FL----PVASPF 427
Query: 503 PSPLIK 508
S L+
Sbjct: 428 HSHLLV 433
Score = 40.0 bits (93), Expect = 0.002
Identities = 73/366 (19%), Positives = 116/366 (31%), Gaps = 142/366 (38%)
Query: 11 QIIATNTASISLLIAGC----WIAWPSVMIKRLTDENPDLEN----------IGIRLNKY 56
++I T + + G W+ P PD + IG+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENP--------SNTPDKDYLLSIPISCPLIGV----I 244
Query: 57 QLS-WMVSLLDLG---NAISPIFAGILVEKIGRKTTLLLNALLCL--PTW--FLVVSNKI 108
QL+ ++V+ LG + G G L+ A+ +W F V K
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-----LVTAVAIAETDSWESFFVSVRK- 298
Query: 109 ECLYIARLF-IGISKGVAY--TAMPIFIGEISEHN----------IRGAL---------- 145
I LF IG+ AY T++P I E S N I
Sbjct: 299 ---AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 146 --GSIPSGFQMVGTLAILLI-G--NHV------SYNSLNIALSILPV--------IFF-- 184
+P+G Q + I L+ G N V S LN+ L I F
Sbjct: 356 TNSHLPAGKQ----VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 185 --ILFS--FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---- 236
+ FS F+P FH+ L + KD+++ S +D++
Sbjct: 412 RKLKFSNRFLPVASPFHSHL--LVPASDLI------NKDLVKNNVSF---NAKDIQIPVY 460
Query: 237 -SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMIT-----------YSSTLLPKLD 284
+ G S+ R ++ S+ +R+ I + +T + LD
Sbjct: 461 DTFDG--------SDLRV----LSGSISERI---VDCIIRLPVKWETTTQFKATHI--LD 503
Query: 285 NAYFGP 290
FGP
Sbjct: 504 ---FGP 506
Score = 31.6 bits (71), Expect = 0.89
Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 92/223 (41%)
Query: 196 FHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFT 255
F + KTEK K ++ E S ++++ L S T FT
Sbjct: 1693 FETIVDGKLKTEKIFK-------EINEHSTSYTFRSEKGLLSAT-------------QFT 1732
Query: 256 ----LVMAASLFQRLGGITSMITYSSTLLPKLDNAYF-GPDQCILVFMIIMFLSNFLQAP 310
+M + F+ L S L+P +A F G S
Sbjct: 1733 QPALTLMEKAAFEDLK--------SKGLIP--ADATFAG-------------HS------ 1763
Query: 311 LMDILGRKPLSCFSAALGCL---LTFSTG---LFY---LYQGELPNFQYIPYITTLLYAA 361
LG ++ AL L ++ + +FY Q +P +
Sbjct: 1764 ----LGE-----YA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDE---------LGR 1804
Query: 362 SYYGI-GCLPNILVSELFPINVRCQASS---CASVALAFGSFI 400
S YG+ P + + Q + V G +
Sbjct: 1805 SNYGMIAINPGRVAASF------SQEALQYVVERVGKRTGWLV 1841
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.001
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 200 KNNLKKTEKSLKWY 213
K LKK + SLK Y
Sbjct: 19 KQALKKLQASLKLY 32
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 35.7 bits (82), Expect = 0.031
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 74 IFAGILVEKIGRKTTLLLNALLCLPTWFLV-VSNKIECLYIARLFIGISKGVAYTAMPIF 132
FA +++ +IG K LLL + + + I + +
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 133 IGEISEHNIRGALGSIPSGFQM-----VGTLAILLIGNHVSYNSLNIALSILPVIFFILF 187
I E + + F ++ + + + + L ++ + F ++
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 188 SFV 190
F
Sbjct: 397 VFT 399
Score = 29.9 bits (67), Expect = 2.1
Identities = 41/412 (9%), Positives = 103/412 (25%), Gaps = 59/412 (14%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLY 112
++K + + + L + + G+L +K+G + LL L + L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 113 IARLFIGISKGVAYTAMPI---------FIGEISEHNIR--GALGSIPSGFQMVGTLAIL 161
+ +G G Y FI ++S + G +G +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 162 LIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVM 221
++ + + ++ +LF + P N + +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------- 210
Query: 222 EEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMI--TYSSTL 279
L + + L + + + ++
Sbjct: 211 --------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 280 LPKL--DNAYFGPDQCILVF--MIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335
FG + IMF + + ++ +G K + +
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLI----INRIGGKNALLLAGTI-------M 299
Query: 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQA-SSCASVAL 394
+ + + + I L+ + ++ F + C
Sbjct: 300 SVRIIGSSFATSALEV-VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 395 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 446
+ + +S+G + + V + + F L +L
Sbjct: 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 33.5 bits (77), Expect = 0.17
Identities = 50/418 (11%), Positives = 123/418 (29%), Gaps = 48/418 (11%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL--------LLNALLCLPTWFLVV 104
++ L + +S + + S G + ++ + L + + W
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--- 115
Query: 105 SNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGT-----LA 159
++ I +++ G +G+ + + RG + S+ + VG L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 160 ILLIGNHVSYNSLNIALSILPVIF-FILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKK 218
+L + +++ + ++ F+ + +TP +S +
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP-------------QSCGLPPIEEY 222
Query: 219 DVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSST 278
+ QE + +L NK +A + + +
Sbjct: 223 KNDYPDDYNEKAEQELTAKQIFMQYVLPNK-----LLWYIAIANV----FVYLLRYGILD 273
Query: 279 LLPK--LDNAYFGPDQCILVFMII---MFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333
P + +F D+ + + L + D + R L+T
Sbjct: 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333
Query: 334 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 393
+T ++++ + I ++ YG L + EL P A+ +
Sbjct: 334 ATIVYWMNP---AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390
Query: 394 LAFGSFITTKFHI-LITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQES 450
G + + G F + +V+ ++ K++ +QE
Sbjct: 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL 448
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Rattus norvegicus}
SCOP: h.1.15.1
Length = 65
Score = 29.4 bits (66), Expect = 0.43
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 221 MEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQR 265
+E + +IM + E + ++ L+ L NK+ L + F+
Sbjct: 18 VEGVKNIMTQNVERILARGENLDHLRNKTED----LEATSEHFKT 58
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 30.7 bits (69), Expect = 1.2
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 302 FLSN-----FLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITT 356
F+ N + + I RK A +LT + G+ +Y + ++ +
Sbjct: 442 FVDNHDTDRDEGSYTVSIYSRKYQ-----AYAYILTRAEGVPTVYWKDYYIWEMKEGLDK 496
Query: 357 LLYAASYYGIGCLPNILVSE 376
LL A YY G + ++
Sbjct: 497 LLTARRYYAYGPGYEVDNND 516
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 30.8 bits (69), Expect = 1.3
Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 23/209 (11%)
Query: 211 KWYRGNKKDVM---EEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRL- 266
W + + E + D ++ + +++ + S+R V +L +R+
Sbjct: 205 SWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCP-VFDFALKERMQ 263
Query: 267 -GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSN-----FLQAPLMDILGRKPL 320
G I + F+ N
Sbjct: 264 NGSIADWKHGLNGNPDPRWREVAVT-----------FVDNHDTGYSPGQNGGQHHWALQD 312
Query: 321 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI 380
A +LT S G +Y + ++ Y +I L+ G+ I +
Sbjct: 313 GLIRQAYAYILT-SPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSAISFHSGYSG 371
Query: 381 NVRCQASSCASVALAFGSFITTKFHILIT 409
V + S ++ +A S + +
Sbjct: 372 LVATVSGSQQTLVVALNSDLGNPGQVASG 400
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 29.1 bits (66), Expect = 3.1
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL-NALLCLPTWFLVVSNKIECLYIAR 115
Q + L +S +F G + +++GR+ +L+ ++ L T V ++ + L A
Sbjct: 38 QSV--MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAAS 95
Query: 116 LFIGISKGVA 125
G+ GV
Sbjct: 96 AMQGMGTGVG 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,533,576
Number of extensions: 443544
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 24
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.7 bits)