RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15227
(515 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 75.9 bits (185), Expect = 3e-15
Identities = 51/403 (12%), Positives = 117/403 (29%), Gaps = 20/403 (4%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL-----VVSNK 107
++ L + +S + + S G + ++ + L +L ++
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 108 IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167
I +++ G +G+ + + RG + S+ + VG L+
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 168 SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSI 227
+ ++ F + + A ++ T +S + +
Sbjct: 176 MAWFNDWHAALYMPAFCAILVAL-------FAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 228
Query: 228 MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAY 287
QE + +L N + + A++F L + + L A
Sbjct: 229 EKAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 288 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347
++ L + D + R L+T +T ++++ P
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP- 343
Query: 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFITTKFHI 406
+ I ++ YG L + EL P A+ GS +
Sbjct: 344 --TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 401
Query: 407 LITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 449
G F + +V+ ++ K++ +QE
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 50.2 bits (118), Expect = 3e-07
Identities = 35/408 (8%), Positives = 95/408 (23%), Gaps = 47/408 (11%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLY 112
++K + + + L + + G+L +K+G + LL L + L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 113 IARLFIGISKGVAYTAMPIFIG-----------EISEHNIRGALGSIPSGFQMVGTLAIL 161
+ +G G Y G + G +G +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 162 LIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVM 221
++ + + ++ +LF + P N + + +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL--- 216
Query: 222 EEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP 281
+ +L + + ++
Sbjct: 217 ------------------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA 252
Query: 282 KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 341
+ + ++ F +++ +G K + + + +
Sbjct: 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--- 309
Query: 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFI 400
I L+ + ++ F + C
Sbjct: 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364
Query: 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQ 448
+ + +S+G + + V + + F L +L Q
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 28.8 bits (63), Expect = 1.9
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 279 LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF 338
+ + N + V F+ N P + A +LT G
Sbjct: 307 MRTLMTNTLMKDQPTLAV----TFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYP 362
Query: 339 YLYQGE 344
++ G+
Sbjct: 363 CVFYGD 368
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 28.4 bits (62), Expect = 2.1
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 283 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ 342
L+ V F+ N P + A +LT +G ++
Sbjct: 308 LNGTVVSKHPLKSV----TFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFY 363
Query: 343 GE 344
G+
Sbjct: 364 GD 365
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.9 bits (59), Expect = 3.0
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 298 MIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTL 357
++ S + L S TF L Y Y L + L
Sbjct: 45 TVLACTSKMFEILFHRNSQHYTLDFLSPK-----TFQQILEYAYTATLQAKAED--LDDL 97
Query: 358 LYAASYYGIGCL 369
LYAA I L
Sbjct: 98 LYAAEILEIEYL 109
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 27.3 bits (60), Expect = 4.5
Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 195 HFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 254
F+ A + + G E + +M + ++ ++ +
Sbjct: 86 LFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGT 145
Query: 255 TLVMAASLFQRL---GGITSMITYSSTLLPKLDNAYFGPDQCIL 295
A L + L G +++ + P++ + P +
Sbjct: 146 GSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVF 189
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,833,893
Number of extensions: 83332
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 12
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.3 bits)