BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1523
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DJU|B Chain B, Crystal Structure Of Human Btg2
          Length = 122

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40  VSYRIGEKGDVKILYRES 57
           VSYRIGE G + +LY E+
Sbjct: 103 VSYRIGEDGSICVLYEEA 120


>pdb|3E9V|A Chain A, Crystal Structure Of Human B-Cell Translocation Gene 2
           (Btg2)
          Length = 120

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40  VSYRIGEKGDVKILYRES 57
           VSYRIGE G + +LY E+
Sbjct: 102 VSYRIGEDGSICVLYEEA 119


>pdb|2Z15|A Chain A, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|B Chain B, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|C Chain C, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|D Chain D, Crystal Structure Of Human Tob1 Protein
          Length = 130

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 40  VSYRIGEKGDVKILY 54
           VSY+IGEKG VK+LY
Sbjct: 106 VSYQIGEKGPVKVLY 120


>pdb|2D5R|B Chain B, Crystal Structure Of A Tob-Hcaf1 Complex
          Length = 116

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 40  VSYRIGEKGDVKILY 54
           VSY+IGEKG VK+LY
Sbjct: 100 VSYQIGEKGPVKVLY 114


>pdb|3DJN|B Chain B, Crystal Structure Of Mouse Tis21
          Length = 118

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 40  VSYRIGEKGDVKILYRE 56
           VSYRIGE G + +LY E
Sbjct: 102 VSYRIGEDGSICVLYEE 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,025,004
Number of Sequences: 62578
Number of extensions: 191092
Number of successful extensions: 238
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)