Query psy1523
Match_columns 190
No_of_seqs 57 out of 59
Neff 2.1
Searched_HMMs 46136
Date Sat Aug 17 00:38:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4006|consensus 99.9 7.5E-23 1.6E-27 180.5 3.8 121 25-186 82-236 (311)
2 PF07742 BTG: BTG family; Int 99.3 2.4E-12 5.2E-17 99.4 3.9 29 26-54 89-117 (118)
3 smart00099 btg1 tob/btg1 famil 98.8 2.4E-09 5.3E-14 83.0 2.3 23 25-47 86-108 (108)
4 KOG4006|consensus 96.5 0.00073 1.6E-08 61.0 0.3 40 22-61 148-190 (311)
5 PF07145 PAM2: Ataxin-2 C-term 66.7 1.7 3.6E-05 25.2 -0.2 15 97-111 2-16 (18)
6 TIGR03836 termin_org_HMW1 cyta 37.8 25 0.00055 27.0 2.0 17 43-59 27-43 (82)
7 KOG4432|consensus 35.7 42 0.0009 31.8 3.4 75 33-117 2-87 (405)
8 smart00322 KH K homology RNA-b 30.9 44 0.00095 20.3 2.0 22 28-49 2-23 (69)
9 TIGR02572 LcrR type III secret 25.2 88 0.0019 26.1 3.3 31 32-62 31-61 (139)
10 PRK15360 pathogenicity island 22.9 98 0.0021 25.6 3.1 28 32-60 30-57 (137)
No 1
>KOG4006|consensus
Probab=99.86 E-value=7.5e-23 Score=180.52 Aligned_cols=121 Identities=31% Similarity=0.357 Sum_probs=102.5
Q ss_pred CCcceeEEEEEecceeeEEeccccceEEEEecCCCCCCCCCCCCcCCCCCCCCCCCcCCCCcccchhhhhhhhhhcCCCC
Q psy1523 25 NNHNVLVGSIVEIILVSYRIGEKGDVKILYRESWDRKTSAPGAAVSGPPTLSPSSLDATADPSLHAAAMDREVHKTFNPE 104 (190)
Q Consensus 25 ~~~~~eLsvWIDP~EVSYRIGEkGsVkVLY~~d~e~~~~ap~a~~s~~~~l~~ss~~~~~d~~~~~~~~d~ev~~tFNPe 104 (190)
.+|+-+|.+|||||||||||||+|.+|+||-+|.+.+| ..+.|+||.++||||
T Consensus 82 rnlp~~lsv~idpFevslqi~ekg~yK~hw~~d~p~kG---------------------------~~~rcirIn~~~npd 134 (311)
T KOG4006|consen 82 RNLPKLLSVWIDPFEVSLQIGEKGAYKVHWFPDKPSKG---------------------------QAYRCIRINKSFNPD 134 (311)
T ss_pred HhCcchhheeecchhhHHhhhhccceeeeecCCCCCCC---------------------------chhhhHHHhhccCCc
Confidence 47899999999999999999999999999999999988 249999999999999
Q ss_pred ceEEeecccccccccCCCCCCCCCCCCCCCCCCcCCCCCCcceeehhhh-----------------------------hh
Q psy1523 105 ARVFRPVEVCLASLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASF-----------------------------AQ 155 (190)
Q Consensus 105 AqvF~PI~~~~~slS~sp~~~ssSpSp~~gsptf~pr~~~PLTFTTAsF-----------------------------Aq 155 (190)
||||+||+....+.+.. ++|+++++..+|++|+|++| ++
T Consensus 135 aq~~~~i~~~~ss~s~~------------~lPtelt~wvdP~evs~r~~~~~gek~~~~~~a~s~~g~~~p~~~~~k~~~ 202 (311)
T KOG4006|consen 135 AQVFRPIGASNSSVSNL------------GLPTELTLWVDPIEVSTRSFPIGGEKNNAALVASSPLGAEYPDEFVRKATS 202 (311)
T ss_pred hhhhhcccccccchhcc------------CCCcccccccCceEEEeeecccCccccchhheecccccccCchHHHHHHHh
Confidence 99999999877665433 26788888888888888733 34
Q ss_pred hcccccccccCCCCCC-----CCCCCchhhhhhhhh
Q psy1523 156 TKFGSTKLKTNSKRTN-----RGEPLSKDYNYILDV 186 (190)
Q Consensus 156 TKFGSTKmK~~skr~n-----r~sPt~~f~nyikq~ 186 (190)
+ |+++|.++.++|.+ +|+|.+ +.+||.+.
T Consensus 203 a-~~s~s~~~~sg~s~s~~~~~~~~~s-~p~t~~~s 236 (311)
T KOG4006|consen 203 A-LDSCSSQTLSGRSSSSESYSKSPAS-PPPTMPVS 236 (311)
T ss_pred h-ccchhhhhhcCccCchhhcccCcCC-CCCCCCcC
Confidence 4 89999999999987 678888 77777654
No 2
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=99.28 E-value=2.4e-12 Score=99.39 Aligned_cols=29 Identities=41% Similarity=0.463 Sum_probs=26.0
Q ss_pred CcceeEEEEEecceeeEEeccccceEEEE
Q psy1523 26 NHNVLVGSIVEIILVSYRIGEKGDVKILY 54 (190)
Q Consensus 26 ~~~~eLsvWIDP~EVSYRIGEkGsVkVLY 54 (190)
.+|.||+|||||+||||||||+|+|+|+|
T Consensus 89 ~LP~eltlWvDPgeVs~R~ge~g~~~v~~ 117 (118)
T PF07742_consen 89 LLPRELTLWVDPGEVSYRIGEKGSICVLY 117 (118)
T ss_dssp HS-TTEEEEEETTEEEEEESTTS-EEEEE
T ss_pred hcchhcEEEECCCEEEEEEcCCCceEEee
Confidence 48999999999999999999999999998
No 3
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=98.79 E-value=2.4e-09 Score=83.01 Aligned_cols=23 Identities=43% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCcceeEEEEEecceeeEEeccc
Q psy1523 25 NNHNVLVGSIVEIILVSYRIGEK 47 (190)
Q Consensus 25 ~~~~~eLsvWIDP~EVSYRIGEk 47 (190)
.++|.||+|||||+|||||||||
T Consensus 86 ~~LP~eltiwvDP~eVs~R~ge~ 108 (108)
T smart00099 86 GNLPKELTLWVDPFEVSYRIGEK 108 (108)
T ss_pred HhCCcccEEEECCCEEEEeecCC
Confidence 46899999999999999999996
No 4
>KOG4006|consensus
Probab=96.50 E-value=0.00073 Score=60.97 Aligned_cols=40 Identities=25% Similarity=0.062 Sum_probs=34.5
Q ss_pred CCCCCcceeEEEEEecceeeEE---eccccceEEEEecCCCCC
Q psy1523 22 NNNNNHNVLVGSIVEIILVSYR---IGEKGDVKILYRESWDRK 61 (190)
Q Consensus 22 ~~~~~~~~eLsvWIDP~EVSYR---IGEkGsVkVLY~~d~e~~ 61 (190)
-.+--+|.|+++|+||.||+|| ||+++..+++|.....+.
T Consensus 148 ~s~~~lPtelt~wvdP~evs~r~~~~~gek~~~~~~a~s~~g~ 190 (311)
T KOG4006|consen 148 VSNLGLPTELTLWVDPIEVSTRSFPIGGEKNNAALVASSPLGA 190 (311)
T ss_pred hhccCCCcccccccCceEEEeeecccCccccchhheecccccc
Confidence 3455699999999999999999 999999999998776543
No 5
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=66.68 E-value=1.7 Score=25.17 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=11.3
Q ss_pred hhhcCCCCceEEeec
Q psy1523 97 VHKTFNPEARVFRPV 111 (190)
Q Consensus 97 v~~tFNPeAqvF~PI 111 (190)
..+..||+|+.|+|-
T Consensus 2 ~~s~LNp~A~eFvP~ 16 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPS 16 (18)
T ss_dssp -SSSSSTTSSSS-TT
T ss_pred cccccCCCCccccCC
Confidence 357899999999985
No 6
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=37.77 E-value=25 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.4
Q ss_pred EeccccceEEEEecCCC
Q psy1523 43 RIGEKGDVKILYRESWD 59 (190)
Q Consensus 43 RIGEkGsVkVLY~~d~e 59 (190)
++-|+|+|||-|..|..
T Consensus 27 tv~eDg~ikvAyDaDgN 43 (82)
T TIGR03836 27 TVPEDGSIKVAYDADGN 43 (82)
T ss_pred ccCCCCcEEEEEecCCC
Confidence 45689999999987653
No 7
>KOG4432|consensus
Probab=35.74 E-value=42 Score=31.83 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=59.5
Q ss_pred EEEecceeeEEecc-----------ccceEEEEecCCCCCCCCCCCCcCCCCCCCCCCCcCCCCcccchhhhhhhhhhcC
Q psy1523 33 SIVEIILVSYRIGE-----------KGDVKILYRESWDRKTSAPGAAVSGPPTLSPSSLDATADPSLHAAAMDREVHKTF 101 (190)
Q Consensus 33 vWIDP~EVSYRIGE-----------kGsVkVLY~~d~e~~~~ap~a~~s~~~~l~~ss~~~~~d~~~~~~~~d~ev~~tF 101 (190)
-|+-|.|.||-... .|.+.+||..+-|. |-++-..-|.-+++...|++|.-+.|+.--++|
T Consensus 2 ~~~k~~~m~y~~~~~~r~~e~~q~~~~v~ill~~r~~eq--------~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~ 73 (405)
T KOG4432|consen 2 KYQKGMEMSYTLDGNSRVSEFNQKMSSVSILLFHRDLEQ--------FLLVRQFRPAIFTASNSPENHGKEFDKIDWSSY 73 (405)
T ss_pred CcccCceEEEEecCchHHHHHHhhccceEEEEEccchhh--------hehhhhhchhheecccCCCCCCcccccccHhhC
Confidence 48999999997654 36678899887753 556777778888888889999999999888999
Q ss_pred CCCceEEeeccccccc
Q psy1523 102 NPEARVFRPVEVCLAS 117 (190)
Q Consensus 102 NPeAqvF~PI~~~~~s 117 (190)
.||.++. |+-|.+.
T Consensus 74 ~~e~g~t--ielc~g~ 87 (405)
T KOG4432|consen 74 DSETGYT--IELCAGL 87 (405)
T ss_pred CCcccee--eeeeccc
Confidence 9999987 4545544
No 8
>smart00322 KH K homology RNA-binding domain.
Probab=30.93 E-value=44 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.3
Q ss_pred ceeEEEEEecceeeEEeccccc
Q psy1523 28 NVLVGSIVEIILVSYRIGEKGD 49 (190)
Q Consensus 28 ~~eLsvWIDP~EVSYRIGEkGs 49 (190)
.....+||.+..+.+-||.+|.
T Consensus 2 ~~~~~i~i~~~~~~~liG~~G~ 23 (69)
T smart00322 2 PVTIEVLIPADKVGLIIGKGGS 23 (69)
T ss_pred ceEEEEEEcchhcceeECCCch
Confidence 3567899999999999999996
No 9
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=25.21 E-value=88 Score=26.12 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEecceeeEEeccccceEEEEecCCCCCC
Q psy1523 32 GSIVEIILVSYRIGEKGDVKILYRESWDRKT 62 (190)
Q Consensus 32 svWIDP~EVSYRIGEkGsVkVLY~~d~e~~~ 62 (190)
-+|+++.||-||+-++--|.++..-..+..|
T Consensus 31 ~f~l~g~~lawRVE~~rviI~lLrR~~~~~G 61 (139)
T TIGR02572 31 RVEVDGCELAWRVEEERVWIVLLRRVSQRRG 61 (139)
T ss_pred EEEEcceEEEEEecCCEEEEEEEEEcccccC
Confidence 5899999999999875444444444444444
No 10
>PRK15360 pathogenicity island 2 effector protein SseE; Provisional
Probab=22.90 E-value=98 Score=25.56 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=20.1
Q ss_pred EEEEecceeeEEeccccceEEEEecCCCC
Q psy1523 32 GSIVEIILVSYRIGEKGDVKILYRESWDR 60 (190)
Q Consensus 32 svWIDP~EVSYRIGEkGsVkVLY~~d~e~ 60 (190)
-+|.++.||-||+-+ +.|.|++-+-..+
T Consensus 30 ~~~~~g~~lvyRvE~-~eliIc~lrR~~~ 57 (137)
T PRK15360 30 QFILSPYLVIYRIEA-KEMIICEFRRLTP 57 (137)
T ss_pred EEEEcCEEEEEEecC-CEEEEEEEEeccC
Confidence 579999999999986 5555555544433
Done!