Query psy1523
Match_columns 190
No_of_seqs 57 out of 59
Neff 2.1
Searched_HMMs 29240
Date Sat Aug 17 00:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e9v_A Protein BTG2; B-cell tr 99.5 1.7E-14 5.9E-19 111.2 4.4 33 26-58 88-120 (120)
2 2z15_A Protein TOB1; human TOB 99.4 1.2E-13 4E-18 107.7 4.0 36 26-61 92-127 (130)
3 2l7y_A Putative endo-beta-N-ac 36.4 17 0.00059 27.0 2.0 27 35-61 12-43 (98)
4 2ec3_A Fibronectin; complement 34.3 6.7 0.00023 28.2 -0.5 12 38-49 23-34 (68)
5 2rl0_A Fibronectin; 4F15F1, be 26.9 18 0.00061 26.8 0.7 11 39-49 54-64 (89)
6 2cg7_A Fibronectin; signaling 22.7 21 0.00071 26.4 0.3 14 36-49 7-21 (90)
7 1vq8_P 50S ribosomal protein L 20.0 21 0.00073 28.5 -0.1 10 32-41 21-30 (149)
8 1jgn_B PAIP2, polyadenylate-bi 19.7 21 0.00073 21.5 -0.1 13 98-110 3-15 (26)
9 3j21_Q PFEL19, 50S ribosomal p 19.1 25 0.00085 28.1 0.1 10 32-41 21-30 (150)
10 3jyw_P 60S ribosomal protein L 17.9 27 0.00094 28.5 0.1 10 32-41 20-29 (176)
No 1
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=99.48 E-value=1.7e-14 Score=111.21 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=30.9
Q ss_pred CcceeEEEEEecceeeEEeccccceEEEEecCC
Q psy1523 26 NHNVLVGSIVEIILVSYRIGEKGDVKILYRESW 58 (190)
Q Consensus 26 ~~~~eLsvWIDP~EVSYRIGEkGsVkVLY~~d~ 58 (190)
.+|.||+|||||+||||||||+|+|||||.+++
T Consensus 88 ~LP~eltlWvDPgeVs~R~GE~g~i~vly~~~~ 120 (120)
T 3e9v_A 88 LLPSELTLWVDPYEVSYRIGEDGSICVLYEEAP 120 (120)
T ss_dssp HSCTTEEEEEETTEEEEEESTTSCEEEEEECCC
T ss_pred hCCcccEEEECCCEEEEEecCCCeEEEEecCCC
Confidence 479999999999999999999999999999863
No 2
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=99.40 E-value=1.2e-13 Score=107.65 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=31.8
Q ss_pred CcceeEEEEEecceeeEEeccccceEEEEecCCCCC
Q psy1523 26 NHNVLVGSIVEIILVSYRIGEKGDVKILYRESWDRK 61 (190)
Q Consensus 26 ~~~~eLsvWIDP~EVSYRIGEkGsVkVLY~~d~e~~ 61 (190)
++|.||+|||||+||||||||+|+|||||.++.++.
T Consensus 92 ~LP~eltlWvDPgeVs~R~ge~g~i~~l~~~~~~~~ 127 (130)
T 2z15_A 92 NLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNSGP 127 (130)
T ss_dssp HSCTTEEEEEETTEEEEEESTTSCEEEEEECCC---
T ss_pred hCCccCEEEECCCEEEEEEcCCCcEEEEeeCCCCCC
Confidence 489999999999999999999999999999998653
No 3
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=36.40 E-value=17 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.2
Q ss_pred EecceeeEEeccc-----cceEEEEecCCCCC
Q psy1523 35 VEIILVSYRIGEK-----GDVKILYRESWDRK 61 (190)
Q Consensus 35 IDP~EVSYRIGEk-----GsVkVLY~~d~e~~ 61 (190)
+.+-...|+|||+ |.|++.|++.....
T Consensus 12 ~~~P~k~Y~vGE~LDltGl~v~~~YsDgt~~~ 43 (98)
T 2l7y_A 12 SQEPKKDYLVGDSLDLSEGRFAVAYSNDTMEE 43 (98)
T ss_dssp CCCSCCEEETTTCCCCCSCEEEEEETTSCEEE
T ss_pred EcCCCcEEecCCccccCCCEEEEEEcCCCEEE
Confidence 4444455999995 77999999887653
No 4
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.33 E-value=6.7 Score=28.20 Aligned_cols=12 Identities=58% Similarity=0.714 Sum_probs=9.7
Q ss_pred ceeeEEeccccc
Q psy1523 38 ILVSYRIGEKGD 49 (190)
Q Consensus 38 ~EVSYRIGEkGs 49 (190)
.-|+|||||++.
T Consensus 23 ~G~~YrIGe~W~ 34 (68)
T 2ec3_A 23 NGVNYKIGEKWD 34 (68)
T ss_dssp SSCCBCTTCEEE
T ss_pred CCeeEEcCceEe
Confidence 459999999854
No 5
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=26.90 E-value=18 Score=26.84 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.3
Q ss_pred eeeEEeccccc
Q psy1523 39 LVSYRIGEKGD 49 (190)
Q Consensus 39 EVSYRIGEkGs 49 (190)
-+||||||++.
T Consensus 54 G~~Y~iGetW~ 64 (89)
T 2rl0_A 54 RTSYRIGDTWS 64 (89)
T ss_dssp TEEEETTCEEE
T ss_pred ceEEEcCceee
Confidence 49999999865
No 6
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=22.71 E-value=21 Score=26.40 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=10.6
Q ss_pred ecce-eeEEeccccc
Q psy1523 36 EIIL-VSYRIGEKGD 49 (190)
Q Consensus 36 DP~E-VSYRIGEkGs 49 (190)
||+. ++|+|||+..
T Consensus 7 D~~tg~sY~VGe~We 21 (90)
T 2cg7_A 7 DKYTGNTYRVGDTYE 21 (90)
T ss_dssp CTTTCCEEETTCEEE
T ss_pred cCCCCeEeecCCeee
Confidence 6654 9999999643
No 7
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=19.96 E-value=21 Score=28.50 Aligned_cols=10 Identities=0% Similarity=-0.376 Sum_probs=8.1
Q ss_pred EEEEecceee
Q psy1523 32 GSIVEIILVS 41 (190)
Q Consensus 32 svWIDP~EVS 41 (190)
-||+||.|++
T Consensus 21 rVw~DP~~~~ 30 (149)
T 1vq8_P 21 RVWFNPERQG 30 (149)
T ss_dssp GEEECGGGHH
T ss_pred ceecCHHHHH
Confidence 4899999875
No 8
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=19.66 E-value=21 Score=21.52 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=11.0
Q ss_pred hhcCCCCceEEee
Q psy1523 98 HKTFNPEARVFRP 110 (190)
Q Consensus 98 ~~tFNPeAqvF~P 110 (190)
++..||||.-|.|
T Consensus 3 ks~lnp~akef~p 15 (26)
T 1jgn_B 3 KSNLNPNAKEFVP 15 (26)
T ss_dssp CCSSCTTCCCCCT
T ss_pred cccCCcchhhcCC
Confidence 5678999999987
No 9
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=19.06 E-value=25 Score=28.14 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=8.0
Q ss_pred EEEEecceee
Q psy1523 32 GSIVEIILVS 41 (190)
Q Consensus 32 svWIDP~EVS 41 (190)
-||+||.|++
T Consensus 21 rVWlDP~e~~ 30 (150)
T 3j21_Q 21 RIWIDPERID 30 (150)
T ss_dssp GEEECTTCHH
T ss_pred eeecChHHHH
Confidence 4899998864
No 10
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=17.88 E-value=27 Score=28.46 Aligned_cols=10 Identities=10% Similarity=-0.177 Sum_probs=7.9
Q ss_pred EEEEecceee
Q psy1523 32 GSIVEIILVS 41 (190)
Q Consensus 32 svWIDP~EVS 41 (190)
-||+||.|++
T Consensus 20 rVWlDP~e~~ 29 (176)
T 3jyw_P 20 KVWLDPNETS 29 (176)
T ss_dssp TEECCSSCCH
T ss_pred ccccChHHHH
Confidence 3899999865
Done!