RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1523
(190 letters)
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1 MVVVKNNNTNNNTNNNTNNNTNNNNNHN 28
V ++ + + +N ++ NN NNNNN
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQI 28
Score = 32.0 bits (73), Expect = 0.15
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 6 NNNTNNNTNNNTNNNTNNNNNHN 28
+NN ++N NNN NNN N+N+
Sbjct: 11 HNNADDNYNNNNNNNNQINSNNP 33
Score = 31.6 bits (72), Expect = 0.22
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 KNNNTNNNTNNNTNNNTNNNNNHNVLVGS 33
++N NNN NNN N+NN NN+ S
Sbjct: 14 ADDNYNNNNNNNNQINSNNPNNNGNNQAS 42
Score = 31.6 bits (72), Expect = 0.22
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 4 VKNNNTNNNTNNNTNNNTNNNNNHN 28
+ +N ++ NN NNN N N++N
Sbjct: 8 LSVHNNADDNYNNNNNNNNQINSNN 32
Score = 31.6 bits (72), Expect = 0.22
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 VVVKNNNTNNNTNNNTNNNTNNNNNHNVL 30
+ V NN +N NNN NNN N+NN N
Sbjct: 8 LSVHNNADDNYNNNNNNNNQINSNNPNNN 36
Score = 30.5 bits (69), Expect = 0.57
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 5 KNNNTNNNTNNNTNNNTNNNNNHN 28
+ NN +N NNN NNN ++
Sbjct: 7 HLSVHNNADDNYNNNNNNNNQINS 30
Score = 28.5 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 4 VKNNNTNNNTNNNTNNNTNNNNNHN 28
NNN NNN N+ N N N NN +
Sbjct: 18 YNNNNNNNNQINSNNPNNNGNNQAS 42
>gnl|CDD|149033 pfam07742, BTG, BTG family.
Length = 119
Score = 30.7 bits (70), Expect = 0.20
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 40 VSYRIGEKGDVKILY 54
VSYRIGE G + +LY
Sbjct: 103 VSYRIGENGPICVLY 117
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 28.1 bits (63), Expect = 0.55
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 2 VVVKNN-NTNNNTNNNTNNNTNNNNN 26
++ NN + N +N+++N +++NNNN
Sbjct: 26 YLLLNNWPSTNASNSSSNTSSSNNNN 51
Score = 28.1 bits (63), Expect = 0.57
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 2 VVVKNNNTNNNTNNNTNNNTNNNNNHN 28
+ NN + +N+++NT+++NN+N
Sbjct: 25 TYLLLNNWPSTNASNSSSNTSSSNNNN 51
Score = 24.7 bits (54), Expect = 8.9
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 1 MVVVKNNNTNNNTNNNTNNNTNNNNNHN 28
+ N N + N +N+++N ++++N
Sbjct: 23 VFTYLLLN-NWPSTNASNSSSNTSSSNN 49
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.3 bits (68), Expect = 0.69
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 63 SAPGAAVSGPPTLSPSSLDATADPSLHAAAMDREVHKTFNPEARVFRPVEVCLASLSLNG 122
+ P A +GPP A+ S + P P V + +L
Sbjct: 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPS---------PWDPADPPAAVLAPAAALPP 2820
Query: 123 EERSASPSPTKGSPTFLPRSTAP 145
A P P S P
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPP 2843
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 30.4 bits (68), Expect = 0.72
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 5 KNNNTNNNTNNNTNNNTNNNNNHN 28
K+N NNN NN +NN NNNNN+N
Sbjct: 672 KDNKENNNKNNKDDNNNNNNNNNN 695
Score = 28.8 bits (64), Expect = 2.3
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 5 KNNNTNNNTNNNTNNNTNNNNNHNVLVGSIVE 36
K NN NN ++N NNN NNNN N I+E
Sbjct: 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
Score = 27.7 bits (61), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 6 NNNTNNNTNNNTNNNTNNNNNHNV 29
N NN N + NNN NNNNN+ +
Sbjct: 674 NKENNNKNNKDDNNNNNNNNNNKI 697
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 28.6 bits (63), Expect = 2.0
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 KNNNTNNNTNNNTNNNTNNN 24
KN NTN N+N NTN+NTN N
Sbjct: 335 KNTNTNTNSNTNTNSNTNAN 354
Score = 28.6 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 4 VKNNNTNNNTN-----NNTNNNTNNNNNHN 28
N NNTN NTN NTN+N N N
Sbjct: 319 TNTNTNTNNTNTSTPSKNTNTNTNSNTNTN 348
Score = 27.8 bits (61), Expect = 4.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 6 NNNTNNNTNNNTNNNTNNNNNHNVLVGSIVEII 38
N NTN+NTN N+N N N +++N S II
Sbjct: 338 NTNTNSNTNTNSNTNANQGSSNNNSNSSASAII 370
Score = 27.5 bits (60), Expect = 4.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 8 NTNNNTNNNTNNNTNNNNNHN 28
+ N NTN N+N NTN+N N N
Sbjct: 334 SKNTNTNTNSNTNTNSNTNAN 354
Score = 27.5 bits (60), Expect = 5.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 8 NTNNNTNNNTNNNTNNNNNH 27
NTN NTN+NTN N+N N N
Sbjct: 336 NTNTNTNSNTNTNSNTNANQ 355
Score = 27.1 bits (59), Expect = 6.1
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 6 NNNTN-----NNTNNNTNNNTNNNNNHNVLVGS 33
NNTN NTN NTN+NTN N+N N GS
Sbjct: 325 TNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGS 357
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been
detected as spore proteins but not vegetative proteins
in Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 1 MVVVKNNNTNNNTNNNTNNNTNNNNNHNV 29
V + NTNN N N NN N
Sbjct: 22 NVTDNDGNTNNVNNRNNRNNNNGYGRLTK 50
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria
chlorella virus 1 (PBCV-1) proteins of around 250
residues in length. The function of this family is
unknown.
Length = 229
Score = 27.0 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 13/35 (37%)
Query: 4 VKNNNTNNNTNNNTNNNTNNNNNHNVLVGSIVEII 38
N N N N T N N N V S VE I
Sbjct: 61 TGVVNNNVNNINKTINTKNITINLTVPDKSTVEDI 95
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 26.2 bits (57), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 7 NNTNNNTNNNTNNNTNNNNNHNVLVGSI 34
+ +N + N N NNN NN NN+N +I
Sbjct: 51 SLSNLSNNYNYNNNYNNYNNYNKHYYNI 78
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 27.2 bits (60), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 7 NNTNNNTNNNTNNNTNNNNNH 27
NN N+NN NN+TNN
Sbjct: 304 NNKRENSNNGNNNSTNNVCYA 324
>gnl|CDD|222870 PHA02552, 4, head completion protein; Provisional.
Length = 151
Score = 26.2 bits (58), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 47 KGDV-KILYRESWDRK 61
KGD KI YR SW+R
Sbjct: 16 KGDPRKITYRSSWERW 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.361
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,096,458
Number of extensions: 799101
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 89
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.3 bits)