RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1523
         (190 letters)



>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics,
           PSI- 2, protein structure initiative; 1.70A {Homo
           sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
          Length = 120

 Score = 33.7 bits (77), Expect = 0.011
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40  VSYRIGEKGDVKILYRES 57
           VSYRIGE G + +LY E+
Sbjct: 102 VSYRIGEDGSICVLYEEA 119


>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.30A {Homo sapiens} SCOP:
           d.370.1.1 PDB: 2d5r_B
          Length = 130

 Score = 33.0 bits (75), Expect = 0.018
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 40  VSYRIGEKGDVKILYRESWDRKTSAPGAA 68
           VSY+IGEKG VK+LY +      S P + 
Sbjct: 106 VSYQIGEKGPVKVLYVD----DNSGPSSG 130


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.048
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 35/80 (43%)

Query: 69  VSGPPTLSPSSLDATADPSLHAAAMDREVHKTFNPEARVFRPVEVCLASLSLNGEERSAS 128
           VSGPP             SL+   ++  + K   P                 +G ++S  
Sbjct: 379 VSGPPQ------------SLY--GLNLTLRKAKAP-----------------SGLDQSRI 407

Query: 129 P-SPTK--GSPTFLPRSTAP 145
           P S  K   S  FLP   +P
Sbjct: 408 PFSERKLKFSNRFLP-VASP 426



 Score = 27.7 bits (61), Expect = 2.7
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 23/88 (26%)

Query: 16  NTNNNTNNNNNHNVLVGSIVEIILVSYRIGEKGDVKILYRESWDR--KTSA-------PG 66
           +T + ++       +   IV+ I+             +    W+   +  A       PG
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCII----------RLPVK---WETTTQFKATHILDFGPG 507

Query: 67  AAVSGPPTLSPSSLDATADPSLHAAAMD 94
              SG   L+  + D T    + A  +D
Sbjct: 508 -GASGLGVLTHRNKDGTGVRVIVAGTLD 534


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 1.0
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 11/32 (34%)

Query: 46 EKGDVKIL------YRESWDRKTSAPGAAVSG 71
          EK  +K L      Y +  D   SAP  A+  
Sbjct: 18 EKQALKKLQASLKLYAD--D---SAPALAIKA 44


>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
           HTR-like protei protein structure initiative; HET: MSE
           I3A; 1.73A {Haloarcula marismortui atcc 43049}
          Length = 126

 Score = 26.8 bits (60), Expect = 2.5
 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 7/58 (12%)

Query: 75  LSPSSLDATADPSLHAAAMDR-EVHKTFNPEARVFR------PVEVCLASLSLNGEER 125
            S    D   D       +    V +    E    R       VEV L   +L GE+R
Sbjct: 60  RSIWEFDLMFDAEDVQTQLSGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNLEGEDR 117


>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
          Length = 368

 Score = 26.8 bits (58), Expect = 5.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 2  VVVKNNNTNNNTNNNTNNNTNNNNN 26
          + +KN+  N NTN++T+ +T N  +
Sbjct: 38 LTIKNDQPNRNTNSSTSQSTENRLS 62


>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex
          (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN;
          2.20A {Influenza a virus} SCOP: b.68.1.1
          Length = 470

 Score = 26.5 bits (58), Expect = 7.1
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 7  NNTNNNTNNNTNNNTNNNNNHNVLV 31
           N +    NN  N TN     N  +
Sbjct: 51 TNASQTIINNYYNETNITQISNTNI 75


>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
           gibberellin signaling pathway, hydrolase, nucleus,
           hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
           PDB: 3ed1_A*
          Length = 365

 Score = 26.2 bits (58), Expect = 8.5
 Identities = 10/56 (17%), Positives = 17/56 (30%)

Query: 82  ATADPSLHAAAMDREVHKTFNPEARVFRPVEVCLASLSLNGEERSASPSPTKGSPT 137
           A A P    ++ D  + ++   E R++R      A        R      T     
Sbjct: 54  ANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAA 109


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,643,852
Number of extensions: 140205
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 17
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.2 bits)