RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1523
         (190 letters)



>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative
           protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 120

 Score = 33.2 bits (76), Expect = 0.006
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40  VSYRIGEKGDVKILYRES 57
           VSYRIGE G + +LY E+
Sbjct: 102 VSYRIGEDGSICVLYEEA 119


>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 117

 Score = 32.4 bits (74), Expect = 0.011
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 40  VSYRIGEKGDVKILY 54
           VSY+IGEKG VK+LY
Sbjct: 99  VSYQIGEKGPVKVLY 113


>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
           domain {Desulfovibrio gigas [TaxId: 879]}
          Length = 80

 Score = 26.7 bits (59), Expect = 0.62
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 117 SLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTN 171
            +++NG E++            L R    LT       Q + G+  +  + K   
Sbjct: 5   VITVNGIEQNLFVDAEALLSDVL-RQQLGLTGVKVGCEQGQCGACSVILDGKVVR 58


>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina
           thermophila [TaxId: 2210]}
          Length = 197

 Score = 26.5 bits (58), Expect = 1.5
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 64  APGAAVSGPPTLSPSSLDATADPSL-HAAAMDREVHKTFNPEARVF 108
              A +  PP +   S  A   P        D   H+T  P A ++
Sbjct: 117 FELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMY 162


>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
           QorS, N-domain {Pseudomonas putida [TaxId: 303]}
          Length = 81

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 117 SLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTN 171
           S ++NG+ R     P       L R    LT T     Q   GS  +  +     
Sbjct: 7   SATINGKPRVFYVEPRMHLADAL-REVVGLTGTKIGCEQGVCGSCTILIDGAPMR 60


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
          {Human coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 5  KNNNTNNNTNNNTNNNTNNN 24
           +  + +   N+  + TN N
Sbjct: 11 AHETSLSAAGNSIIHYTNIN 30



 Score = 25.2 bits (55), Expect = 5.6
 Identities = 3/23 (13%), Positives = 8/23 (34%)

Query: 6  NNNTNNNTNNNTNNNTNNNNNHN 28
              +  + +   N+  +  N N
Sbjct: 8  KTGAHETSLSAAGNSIIHYTNIN 30


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 26.6 bits (59), Expect = 2.0
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 6   NNNTNNNTNNNTNNNTNNNNNHNVLVGSIVEIILVSYRIG 45
           N+   N+T +   +N    ++   L   I +II +  ++G
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVG 256


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus
          type 3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 26.3 bits (58), Expect = 2.4
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 5  KNNNTNNNTNNNTNNNTNNN 24
           + N+N     +T N T  N
Sbjct: 11 AHENSNRAYGGSTINYTTIN 30



 Score = 24.8 bits (54), Expect = 8.6
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 6  NNNTNNNTNNNTNNNTNNNNNHN 28
              + N+N     +T N    N
Sbjct: 8  KVGAHENSNRAYGGSTINYTTIN 30


>d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st
          ketoreductase module {Saccharopolyspora erythraea
          [TaxId: 1836]}
          Length = 209

 Score = 25.9 bits (56), Expect = 2.9
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 54 YRESWDRKTSAPGAAVSGPPTLSPSSLDATADPSLHAAAMDR 95
          YR  W    +   A + G   ++  +  A    +    A++ 
Sbjct: 8  YRIEWRPTGAGEPARLDGTWLVAKYAGTADETSTAAREALES 49


>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
          rhinovirus 16, (HRV-16) [TaxId: 31708]}
          Length = 296

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 5  KNNNTNNNTNNNTNNNTNNN 24
           ++  N  +N ++ N  N N
Sbjct: 11 THSTQNMVSNGSSLNYFNIN 30


>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 102

 Score = 24.6 bits (54), Expect = 4.4
 Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 29 VLVGSIVEIILVSYRIGEKGDVKILYR 55
          V  G +V +     +  +K D  I++R
Sbjct: 59 VREGDVVIVKPWEVQGDQKCD--IIWR 83


>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli
          [TaxId: 562]}
          Length = 112

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 30 LVGSIVEIILVSYRIGEKGDVKI 52
          +V + V+ I+ + + G+ GD KI
Sbjct: 69 IVDTCVDTIIRTAQTGKIGDGKI 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,707
Number of extensions: 25623
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 26
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)