Query psy15231
Match_columns 101
No_of_seqs 132 out of 1072
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 00:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 MTH00071 ND1 NADH dehydrogenas 99.9 2.6E-25 5.6E-30 174.7 9.6 87 13-99 2-88 (322)
2 MTH00040 ND1 NADH dehydrogenas 99.9 4.1E-25 9E-30 173.8 9.2 87 14-100 2-88 (323)
3 PF00146 NADHdh: NADH dehydrog 99.9 1.3E-25 2.8E-30 174.9 5.7 81 20-100 4-84 (311)
4 MTH00195 ND1 NADH dehydrogenas 99.9 6.1E-25 1.3E-29 171.6 9.1 76 25-100 11-86 (307)
5 MTH00058 ND1 NADH dehydrogenas 99.9 8.3E-25 1.8E-29 170.3 9.1 83 17-99 2-84 (293)
6 MTH00029 ND1 NADH dehydrogenas 99.9 1.5E-24 3.2E-29 172.0 9.3 76 25-100 16-91 (343)
7 MTH00134 ND1 NADH dehydrogenas 99.9 1.5E-24 3.3E-29 170.5 9.2 79 22-100 12-90 (324)
8 MTH00218 ND1 NADH dehydrogenas 99.9 1.8E-24 3.9E-29 169.3 9.2 75 26-100 12-86 (311)
9 MTH00111 ND1 NADH dehydrogenas 99.9 2.1E-24 4.6E-29 169.6 9.2 82 19-100 8-89 (323)
10 MTH00225 ND1 NADH dehydrogenas 99.9 2.6E-24 5.5E-29 167.9 9.3 77 24-100 9-85 (305)
11 MTH00193 ND1 NADH dehydrogenas 99.9 3E-24 6.6E-29 167.7 9.6 80 20-99 6-85 (306)
12 COG1005 NuoH NADH:ubiquinone o 99.9 2.2E-24 4.8E-29 170.0 8.7 89 12-100 8-96 (332)
13 MTH00143 ND1 NADH dehydrogenas 99.9 3E-24 6.5E-29 167.7 9.1 77 24-100 9-85 (307)
14 KOG4770|consensus 99.9 1.5E-24 3.2E-29 167.8 7.3 81 20-100 7-87 (315)
15 MTH00216 ND1 NADH dehydrogenas 99.9 3.5E-24 7.5E-29 168.6 9.2 82 19-100 9-90 (327)
16 MTH00104 ND1 NADH dehydrogenas 99.9 3.3E-24 7.1E-29 168.2 9.0 76 24-99 8-83 (318)
17 MTH00090 ND1 NADH dehydrogenas 99.9 2.5E-24 5.5E-29 166.7 7.4 76 25-100 5-80 (284)
18 CHL00032 ndhA NADH dehydrogena 99.9 5.1E-24 1.1E-28 170.1 9.2 78 23-100 34-111 (363)
19 PRK06076 NADH:ubiquinone oxido 99.9 4.8E-24 1.1E-28 167.4 8.8 75 25-99 19-93 (322)
20 MTH00010 ND1 NADH dehydrogenas 99.9 4.6E-24 1E-28 167.0 8.6 79 22-100 9-87 (311)
21 MTH00054 ND1 NADH dehydrogenas 99.9 6E-24 1.3E-28 167.2 9.0 75 26-100 12-86 (324)
22 COG0650 HyfC Formate hydrogenl 99.7 7.2E-18 1.6E-22 132.6 9.0 69 23-98 11-79 (309)
23 PF13314 DUF4083: Domain of un 48.9 62 0.0013 19.9 5.8 53 19-75 6-58 (58)
24 PHA03029 hypothetical protein; 46.6 69 0.0015 21.0 4.8 33 15-47 6-41 (92)
25 PRK13454 F0F1 ATP synthase sub 43.7 46 0.00099 24.1 4.1 19 35-53 48-66 (181)
26 PF13260 DUF4051: Protein of u 42.7 75 0.0016 19.1 4.2 27 25-51 8-34 (54)
27 PF02529 PetG: Cytochrome B6-F 42.5 63 0.0014 18.2 3.8 20 35-54 15-34 (37)
28 PRK00665 petG cytochrome b6-f 39.4 58 0.0013 18.3 3.1 17 37-53 17-33 (37)
29 CHL00008 petG cytochrome b6/f 38.4 59 0.0013 18.3 3.0 18 37-54 17-34 (37)
30 PRK04949 putative sulfate tran 38.2 1.5E+02 0.0032 22.7 6.3 46 27-76 93-138 (251)
31 COG3474 Cytochrome c2 [Energy 37.4 39 0.00084 24.1 2.8 49 41-90 39-99 (135)
32 PF15050 SCIMP: SCIMP protein 34.8 72 0.0016 22.6 3.7 32 23-54 9-40 (133)
33 TIGR02019 BchJ bacteriochlorop 31.0 23 0.00051 26.3 0.8 22 50-76 1-22 (188)
34 PRK14472 F0F1 ATP synthase sub 30.4 98 0.0021 22.0 4.0 45 6-53 9-53 (175)
35 PRK14584 hmsS hemin storage sy 29.1 2.3E+02 0.0049 20.6 5.8 51 8-58 49-101 (153)
36 COG4059 MtrE Tetrahydromethano 27.2 74 0.0016 25.1 3.0 31 25-55 265-295 (304)
37 PF08114 PMP1_2: ATPase proteo 26.3 1.4E+02 0.003 17.3 3.7 19 28-46 18-36 (43)
38 KOG0848|consensus 21.6 45 0.00098 26.7 0.9 19 35-53 235-253 (317)
No 1
>MTH00071 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.92 E-value=2.6e-25 Score=174.65 Aligned_cols=87 Identities=38% Similarity=0.550 Sum_probs=78.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHH
Q psy15231 13 RNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92 (101)
Q Consensus 13 ~~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~ 92 (101)
||..+..+..+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||++||.+.|+++|+.+|..+|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~ 81 (322)
T MTH00071 2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81 (322)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcccchhHHHHHHHHhcccCcccchHHHHHHHHH
Confidence 56666666666666667778999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHhh
Q psy15231 93 ISLGVSL 99 (101)
Q Consensus 93 i~~~~~l 99 (101)
+.++.++
T Consensus 82 l~~~~~l 88 (322)
T MTH00071 82 MALTLAL 88 (322)
T ss_pred HHHHHHH
Confidence 9988765
No 2
>MTH00040 ND1 NADH dehydrogenase subunit 1; Validated
Probab=99.92 E-value=4.1e-25 Score=173.76 Aligned_cols=87 Identities=37% Similarity=0.572 Sum_probs=75.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHH
Q psy15231 14 NAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLI 93 (101)
Q Consensus 14 ~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i 93 (101)
|.+....+.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||+.||.+.|+++|+++|..+|++
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l 81 (323)
T MTH00040 2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81 (323)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccchhhHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence 34444445555555577789999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHhhc
Q psy15231 94 SLGVSLG 100 (101)
Q Consensus 94 ~~~~~ll 100 (101)
+++.++.
T Consensus 82 ~~~~~~~ 88 (323)
T MTH00040 82 FLFLALL 88 (323)
T ss_pred HHHHHHH
Confidence 8887653
No 3
>PF00146 NADHdh: NADH dehydrogenase; InterPro: IPR001694 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 1 NADH:ubiquinone oxidoreductase [, ]. Among the many polypeptide subunits that make up complex I, there are fifteen which are located in the membrane part, seven of which are encoded by the mitochondrial and chloroplast genomes of most species. The most conserved of these organelle-encoded subunits is known as subunit 1 (gene ND1 in mitochondrion, and NDH1 in chloroplast) and seems to contain the ubiquinone binding site. The ND1 subunit is highly similar to subunit 4 of Escherichia coli formate hydrogenlyase (gene hycD), subunit C of hydrogenase-4 (gene hyfC). Paracoccus denitrificans NQO8 and Escherichia coli nuoH NADH-ubiquinone oxidoreductase subunits also belong to this family []. This entry also includes the archaeal F420H2 oxidoreductase subunit H (FPO). FPO shuttles electrons from F420H2, via FAD and iron-sulphur (Fe-S) centres, to quinones in the F420H2:heterodisulphide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.92 E-value=1.3e-25 Score=174.89 Aligned_cols=81 Identities=47% Similarity=0.691 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231 20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99 (101)
Q Consensus 20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l 99 (101)
+..+..++.+++++++++++|||++|++|+|+|||++|++|++||++|++||++||++.|+++|+++|..+|+++++.++
T Consensus 4 l~~l~~~l~v~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~l~~~~~~ 83 (311)
T PF00146_consen 4 LSILIIILFVLLSVAFLTLIERKILARIQRRKGPNKVGPMGILQPFYDLIKLFSKEIIIPNSSNKWLFFLAPILAFILSL 83 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHhcccCcCccccccccccccchhhhhh
Confidence 44556677888999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred c
Q psy15231 100 G 100 (101)
Q Consensus 100 l 100 (101)
+
T Consensus 84 ~ 84 (311)
T PF00146_consen 84 L 84 (311)
T ss_pred h
Confidence 4
No 4
>MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.92 E-value=6.1e-25 Score=171.60 Aligned_cols=76 Identities=45% Similarity=0.724 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
.++.++++++++++.|||++|++|+|+||||+|+.|++||++|++||+.||.+.|+++|.++|..+|++.++.+++
T Consensus 11 ~~~~~l~~~~~~~~~eRKi~a~~Q~R~GP~~~g~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~i~~~~~l~ 86 (307)
T MTH00195 11 QIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALI 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCccccchHHhHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999999999999999999999999999998887653
No 5
>MTH00058 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.92 E-value=8.3e-25 Score=170.32 Aligned_cols=83 Identities=34% Similarity=0.428 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHH
Q psy15231 17 SGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLG 96 (101)
Q Consensus 17 ~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~ 96 (101)
++.++.+.+++.++.+++++++.|||++|++|+|+|||++|+.|++||++|+.||+.||++.|+++|+++|..+|++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~tl~eRKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~KE~i~p~~~~~~~f~~~P~~~~~ 81 (293)
T MTH00058 2 FGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVL 81 (293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCcchhHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHH
Confidence 56677777788888999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hhh
Q psy15231 97 VSL 99 (101)
Q Consensus 97 ~~l 99 (101)
.++
T Consensus 82 ~~~ 84 (293)
T MTH00058 82 LVV 84 (293)
T ss_pred HHH
Confidence 664
No 6
>MTH00029 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=1.5e-24 Score=171.99 Aligned_cols=76 Identities=42% Similarity=0.682 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
+++.++++++++++.|||++|++|+|+||||+|++|++||++|++||+.||.+.|+++|+++|..+|++++..+++
T Consensus 16 ~~~~~~~~va~~tl~ERKi~a~~Q~R~GPn~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~~~ 91 (343)
T MTH00029 16 IFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAIL 91 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCccccHHHHHHHHHHHcCccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444667799999999999999999999999999999999999999999999999999999999999999887764
No 7
>MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=1.5e-24 Score=170.54 Aligned_cols=79 Identities=43% Similarity=0.667 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 22 RTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 22 ~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
.+++++.++++++++++.|||++|++|+|+||||+|+.|++||++|++||++||.+.|+++|+++|..+|++.++.+++
T Consensus 12 ~l~~~~~vll~~~~~~~~eRKv~a~~Q~R~GP~~v~~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~ 90 (324)
T MTH00134 12 PLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALT 90 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCCccccchhhHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444555677899999999999999999999999999999999999999999999999999988999999999887653
No 8
>MTH00218 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=1.8e-24 Score=169.26 Aligned_cols=75 Identities=44% Similarity=0.709 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+++|..+|++.+..+++
T Consensus 12 ~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~ 86 (311)
T MTH00218 12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALL 86 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCccCccccchHhhHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence 444667799999999999999999999999999999999999999999999999999999999999998877653
No 9
>MTH00111 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=2.1e-24 Score=169.56 Aligned_cols=82 Identities=40% Similarity=0.589 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231 19 TESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS 98 (101)
Q Consensus 19 ~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ 98 (101)
.++.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||++||.+.|+++|+++|..+|++.++.+
T Consensus 8 ~~~~l~~~~~~~~~~~~~~~~eRKv~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~ 87 (323)
T MTH00111 8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcCCcchhHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34444445556778999999999999999999999999999999999999999999999999999889999999998876
Q ss_pred hc
Q psy15231 99 LG 100 (101)
Q Consensus 99 ll 100 (101)
+.
T Consensus 88 l~ 89 (323)
T MTH00111 88 LT 89 (323)
T ss_pred HH
Confidence 53
No 10
>MTH00225 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=2.6e-24 Score=167.89 Aligned_cols=77 Identities=56% Similarity=0.854 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
+.++.+++++++++++|||++|++|+|+|||++|++|++||++|+.||+.||.+.|+++|.++|..+|++.++.++.
T Consensus 9 ~~~~~~l~~~~~~~~~eRKv~A~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~p~i~~~~~l~ 85 (305)
T MTH00225 9 IMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLI 85 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCccccCccHHHHHHHHHcCCcccccchHHHHHHHHHHHHHHHHH
Confidence 33455677899999999999999999999999999999999999999999999999999999999999998877653
No 11
>MTH00193 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=3e-24 Score=167.65 Aligned_cols=80 Identities=58% Similarity=0.821 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231 20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99 (101)
Q Consensus 20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l 99 (101)
++.+++++.+..+++++++.|||++|++|+|+|||++|++|++||++|+.||+.||.+.|+++|+++|..+|++.+.+++
T Consensus 6 ~~~l~~l~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~~g~~GilQ~~~D~~KLl~Ke~i~p~~~~~~~f~~~p~l~~~~~l 85 (306)
T MTH00193 6 INFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSL 85 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCcccccchHhHHHHHHHcCCcCcccccHHHHHHHHHHHHHHHH
Confidence 33444444566679999999999999999999999999999999999999999999999999999999999999988765
No 12
>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]
Probab=99.91 E-value=2.2e-24 Score=169.99 Aligned_cols=89 Identities=31% Similarity=0.414 Sum_probs=80.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHH
Q psy15231 12 DRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91 (101)
Q Consensus 12 ~~~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP 91 (101)
|....+.....+++++.++..+++.+|+|||+.|++|+|.|||+||++|++|++||++|++.||+++|+++|+++|.++|
T Consensus 8 ~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~f~laP 87 (332)
T COG1005 8 DIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFLFTLAP 87 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCchHHHHHHHHHHHHhcccccCCCCcchHHHHhH
Confidence 34455666666777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy15231 92 LISLGVSLG 100 (101)
Q Consensus 92 ~i~~~~~ll 100 (101)
++++.++++
T Consensus 88 ii~~~~a~~ 96 (332)
T COG1005 88 IIALIPAFL 96 (332)
T ss_pred HHHHHHHHH
Confidence 999988764
No 13
>MTH00143 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=3e-24 Score=167.74 Aligned_cols=77 Identities=51% Similarity=0.852 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
+.++.++++++++++.|||++|++|+|+|||++|++|++||++|++||++||.+.|+++|+++|..+|++.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~l~ 85 (307)
T MTH00143 9 FTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCccHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 33445667899999999999999999999999999999999999999999999999999999999999999887653
No 14
>KOG4770|consensus
Probab=99.91 E-value=1.5e-24 Score=167.76 Aligned_cols=81 Identities=47% Similarity=0.654 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231 20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99 (101)
Q Consensus 20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l 99 (101)
...+..+++++.+++|+++.|||+.|++|+|+|||+||++|++||++|+.||+.||+..|.++|...|.++|.+++.+++
T Consensus 7 ~~illlii~il~~vafl~l~ERkilg~iQ~RkGP~~vg~~GllQplaDg~KL~~KE~l~P~~sn~~lf~i~P~~s~~~~l 86 (315)
T KOG4770|consen 7 AMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTPLNSNEVLFLIAPGISFVLSL 86 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHhcCCCCCCcCCceeeeeccHHHHHHHH
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c
Q psy15231 100 G 100 (101)
Q Consensus 100 l 100 (101)
+
T Consensus 87 l 87 (315)
T KOG4770|consen 87 L 87 (315)
T ss_pred H
Confidence 4
No 15
>MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=3.5e-24 Score=168.58 Aligned_cols=82 Identities=44% Similarity=0.665 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231 19 TESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS 98 (101)
Q Consensus 19 ~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ 98 (101)
..+.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||+.||.+.|+++|+++|..+|++.+.++
T Consensus 9 ~~~~l~~l~~~~~~~~~~~l~eRKi~a~iQ~R~GP~~~g~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~ 88 (327)
T MTH00216 9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCccccchhHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHH
Confidence 33334344556677999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hc
Q psy15231 99 LG 100 (101)
Q Consensus 99 ll 100 (101)
+.
T Consensus 89 l~ 90 (327)
T MTH00216 89 LI 90 (327)
T ss_pred HH
Confidence 53
No 16
>MTH00104 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.91 E-value=3.3e-24 Score=168.19 Aligned_cols=76 Identities=47% Similarity=0.742 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231 24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99 (101)
Q Consensus 24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l 99 (101)
++++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+.+|..+|++.++.++
T Consensus 8 ~~~~~~~~~~~f~~~~eRKv~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~~ 83 (318)
T MTH00104 8 LLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLAL 83 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCccccchHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHH
Confidence 3345566789999999999999999999999999999999999999999999999999998899999999887765
No 17
>MTH00090 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.90 E-value=2.5e-24 Score=166.74 Aligned_cols=76 Identities=36% Similarity=0.530 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
.++.++++++++++.|||++|++|+|+||||+|++|++||++|+.||+.||.+.|+++|+.+|..+|++.++.++.
T Consensus 5 ~~~~~~~~~~~~~l~eRKv~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~l~ 80 (284)
T MTH00090 5 MMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCccccHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999999999999999999999999999999999999999998877653
No 18
>CHL00032 ndhA NADH dehydrogenase subunit 1
Probab=99.90 E-value=5.1e-24 Score=170.12 Aligned_cols=78 Identities=29% Similarity=0.364 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 23 THTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 23 l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
+++++.++++++++++.|||++|++|+|+||||+|+.|++||++|+.||++||.+.|+++|.++|..+|++.++.+++
T Consensus 34 l~~~~~~~~~vaf~~l~ERKi~A~~Q~R~GP~~vg~~GilQp~~D~~KLl~KE~i~p~~~~~~lf~~~P~i~~~~~l~ 111 (363)
T CHL00032 34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILL 111 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCccccccHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 333455667799999999999999999999999999999999999999999999999999999999999998887653
No 19
>PRK06076 NADH:ubiquinone oxidoreductase subunit H; Provisional
Probab=99.90 E-value=4.8e-24 Score=167.37 Aligned_cols=75 Identities=37% Similarity=0.539 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l 99 (101)
.++.+++++++++++|||++||+|+|+||||+|+.|++||++|++||+.||.+.|+++|.++|..+|++.+..++
T Consensus 19 ~l~~~l~~~~f~~l~eRKv~ar~Q~R~GP~~v~~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~l~~~~ 93 (322)
T PRK06076 19 ILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCCcccccchhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 344566779999999999999999999999999999999999999999999999999999999999999888765
No 20
>MTH00010 ND1 NADH dehydrogenase subunit 1; Validated
Probab=99.90 E-value=4.6e-24 Score=167.03 Aligned_cols=79 Identities=48% Similarity=0.659 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 22 RTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 22 ~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
.++.++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+..|..+|++.++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~~g~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~i~~~~~l~ 87 (311)
T MTH00010 9 ILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALL 87 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCcccchHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667777899999999999999999999999999999999999999999999999999988899999999887654
No 21
>MTH00054 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=99.90 E-value=6e-24 Score=167.17 Aligned_cols=75 Identities=45% Similarity=0.740 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG 100 (101)
Q Consensus 26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll 100 (101)
++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||+.||.+.|+++|+++|..+|++.+.+++.
T Consensus 12 ~~~~~~~~~~~~l~ERKi~a~iQ~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~ 86 (324)
T MTH00054 12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFI 86 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCCcccccchhhHHHHHHHcCCcCccchhHHHHHHHHHHHHHHHHH
Confidence 444567799999999999999999999999999999999999999999999999999999999999999887653
No 22
>COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion]
Probab=99.74 E-value=7.2e-18 Score=132.57 Aligned_cols=69 Identities=33% Similarity=0.486 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231 23 THTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS 98 (101)
Q Consensus 23 l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ 98 (101)
+...+.+.+.+|++.+++||++||+|+|+|| +++||+.|.+|++.||.+.|+++. ++|+.+|++.+...
T Consensus 11 l~~~~~a~lv~pl~~GI~RKv~ARiq~R~GP------pi~Qp~~d~lKll~Ke~v~P~~s~-~lf~~~P~~~~g~~ 79 (309)
T COG0650 11 LLQLIIAFLVAPLLSGITRKVRARIQRRIGP------PILQPYYDTLKLLGKETVIPASSG-WLFRLAPYLALGTL 79 (309)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC------CcchHHHHHHHHhccccccCCCch-HHHHHHHHHHHHHH
Confidence 3345566788999999999999999999999 599999999999999999999988 89999999988744
No 23
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=48.90 E-value=62 Score=19.94 Aligned_cols=53 Identities=21% Similarity=0.051 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhcc
Q psy15231 19 TESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKE 75 (101)
Q Consensus 19 ~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE 75 (101)
.+....++...++....++++.|++...-..++-- -..+=|-+.-.+.|+-|+
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~----~~~~eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTLFIRRILINSNAKKQD----VDSMEQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----hhHHHHHHHHHHHHHccC
Confidence 33333344455566667788999887654332221 001455555556665553
No 24
>PHA03029 hypothetical protein; Provisional
Probab=46.58 E-value=69 Score=21.02 Aligned_cols=33 Identities=9% Similarity=-0.160 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q psy15231 15 AMSGTESRTHTTTCEHSGVAFLT---LLERKVLSFI 47 (101)
Q Consensus 15 ~~~~~~~~l~~~i~vl~~~~fl~---~~eRKv~a~~ 47 (101)
..+-.+...++++.++......- +..||++|.+
T Consensus 6 i~~~ii~~iiyiilila~igiiwg~llsi~k~raai 41 (92)
T PHA03029 6 IVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAI 41 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 3588998877
No 25
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.70 E-value=46 Score=24.09 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhccCCCC
Q psy15231 35 FLTLLERKVLSFIQLRKGP 53 (101)
Q Consensus 35 fl~~~eRKv~a~~Q~R~GP 53 (101)
+--.+-+++...++.|..=
T Consensus 48 l~k~l~~PI~~~l~~R~~~ 66 (181)
T PRK13454 48 LTRVALPRIGAVLAERQGT 66 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344456788888888653
No 26
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=42.67 E-value=75 Score=19.08 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRK 51 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~ 51 (101)
+++.+++.+.++.-..|-.+|.=|.|-
T Consensus 8 ivli~lv~~gy~~hmkrycrafrqdrd 34 (54)
T PF13260_consen 8 IVLIVLVVVGYFCHMKRYCRAFRQDRD 34 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344556677788888999999999884
No 27
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=42.48 E-value=63 Score=18.18 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhccCCCCC
Q psy15231 35 FLTLLERKVLSFIQLRKGPN 54 (101)
Q Consensus 35 fl~~~eRKv~a~~Q~R~GP~ 54 (101)
..|..---+.|+.|.|+|-.
T Consensus 15 ~vtl~Glfv~Ay~QY~Rg~q 34 (37)
T PF02529_consen 15 PVTLAGLFVAAYLQYRRGNQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHCS--T
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 34444456789999999853
No 28
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=39.40 E-value=58 Score=18.30 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhccCCCC
Q psy15231 37 TLLERKVLSFIQLRKGP 53 (101)
Q Consensus 37 ~~~eRKv~a~~Q~R~GP 53 (101)
|..---+.|+.|.|+|-
T Consensus 17 Tl~GlfvaAylQYrRg~ 33 (37)
T PRK00665 17 TLAGLFVAAWNQYKRGN 33 (37)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 33444578999999985
No 29
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=38.41 E-value=59 Score=18.28 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccCCCCC
Q psy15231 37 TLLERKVLSFIQLRKGPN 54 (101)
Q Consensus 37 ~~~eRKv~a~~Q~R~GP~ 54 (101)
|..---+.|+.|.|+|-.
T Consensus 17 Tl~GlfvaAylQYrRg~~ 34 (37)
T CHL00008 17 TLAGLFVTAYLQYRRGDQ 34 (37)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 333345779999999853
No 30
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=38.24 E-value=1.5e+02 Score=22.74 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccc
Q psy15231 27 TCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEF 76 (101)
Q Consensus 27 i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~ 76 (101)
+..++++||...+..|+..+.-++.+|+ .+..|.++|..|-+..|-
T Consensus 93 v~~~IaaPF~~~lAE~VE~~l~g~~~~~----~~~~~~~~~~~r~l~~el 138 (251)
T PRK04949 93 LANFIAAPFNGLLAEKVEARLTGETLPD----TGIAGLVKDVPRILKREW 138 (251)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCCCCCC----CchHHHHHHHHHHHHHHH
Confidence 4566888888888888887766554443 356788888888887664
No 31
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=37.43 E-value=39 Score=24.15 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHhccCCC-CCcCCc--cccc---------hhHHHHHHHhhccccccccccchhHhHH
Q psy15231 41 RKVLSFIQLRKG-PNKRGV--IGIF---------QPFSDAIKLYTKEFFIPLKSNDYPYWVT 90 (101)
Q Consensus 41 RKv~a~~Q~R~G-P~~vg~--~Gll---------Q~~aD~lKLl~KE~i~p~~s~~~~f~~a 90 (101)
+|..+-.+.-+| ||+||| +|++ -.|+|++|=. +..+.-..-+..-|.-.
T Consensus 39 kkC~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~-~~g~vWd~~~L~~fL~~ 99 (135)
T COG3474 39 KKCQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKA-GGGIVWDEDNLDEFLTA 99 (135)
T ss_pred HHHHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhc-cCCcccCHHHHHHHHhC
Confidence 447777776666 999987 4443 4578888776 33344333333333333
No 32
>PF15050 SCIMP: SCIMP protein
Probab=34.84 E-value=72 Score=22.64 Aligned_cols=32 Identities=19% Similarity=-0.009 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy15231 23 THTTTCEHSGVAFLTLLERKVLSFIQLRKGPN 54 (101)
Q Consensus 23 l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~ 54 (101)
++++...++.+....++.--...+.|.|+|-+
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 33333335555566666666777888999975
No 33
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=30.99 E-value=23 Score=26.34 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=16.7
Q ss_pred CCCCCcCCccccchhHHHHHHHhhccc
Q psy15231 50 RKGPNKRGVIGIFQPFSDAIKLYTKEF 76 (101)
Q Consensus 50 R~GP~~vg~~GllQ~~aD~lKLl~KE~ 76 (101)
|+||| .++|...-.-+-..|+.
T Consensus 1 rIGPN-----aiiq~~~al~~~~g~~~ 22 (188)
T TIGR02019 1 RIGPN-----SIIQTVPALEAAYGPGA 22 (188)
T ss_pred CCCch-----HHHHHHHHHHHhcCHHH
Confidence 78999 89999877666666553
No 34
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.41 E-value=98 Score=21.96 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=22.2
Q ss_pred CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy15231 6 FEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGP 53 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP 53 (101)
-++|.+|.+. ...-|.+ +-++++...+...+-+.+...+..|+-=
T Consensus 9 ~~~~~~~~~~--~~~~~~~-i~Flil~~lL~~~l~kpi~~~l~~R~~~ 53 (175)
T PRK14472 9 LSGGLLSPNP--GLIFWTA-VTFVIVLLILKKIAWGPILSALEEREKG 53 (175)
T ss_pred hcCCccCCCH--HHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3678888772 2222211 2222222233344556677777777543
No 35
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=29.08 E-value=2.3e+02 Score=20.59 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=24.8
Q ss_pred CCccchhhhhhHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHhccCCCCCcCCc
Q psy15231 8 PGPVDRNAMSGTESRTHTTT-CEHSGVAFLTLLE-RKVLSFIQLRKGPNKRGV 58 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~i-~vl~~~~fl~~~e-RKv~a~~Q~R~GP~~vg~ 58 (101)
|-|...+.+.+.-+..+++. .++-++.++.|.+ .+.+-+-|+|..|..+..
T Consensus 49 p~~~~~~~~s~~~tl~~yl~ial~nAvlLI~WA~YN~~RF~~eRR~~~~~l~~ 101 (153)
T PRK14584 49 PIPLRIYILSGLTTIALYLAIAAFNAVLLIIWAKYNQVRFQVERRGHRPDLDD 101 (153)
T ss_pred CcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCh
Confidence 44455554444443444433 3333444555542 233334477777776653
No 36
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=27.23 E-value=74 Score=25.07 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNK 55 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~ 55 (101)
.++.-++.+..+..+.||+.-.-.+|.||.+
T Consensus 265 siv~Gliiv~iLii~N~kvEv~ARn~YGpY~ 295 (304)
T COG4059 265 SIVAGLIIVLILIIWNRKVEVKARNAYGPYK 295 (304)
T ss_pred hhHHHHHHHHHHHHhcchhhhhhhhccCCcc
Confidence 3445556667777889999988899999963
No 37
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.29 E-value=1.4e+02 Score=17.27 Aligned_cols=19 Identities=11% Similarity=-0.237 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15231 28 CEHSGVAFLTLLERKVLSF 46 (101)
Q Consensus 28 ~vl~~~~fl~~~eRKv~a~ 46 (101)
++.....+.+..-||..||
T Consensus 18 glv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 18 GLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344455567777665
No 38
>KOG0848|consensus
Probab=21.64 E-value=45 Score=26.74 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhccCCCC
Q psy15231 35 FLTLLERKVLSFIQLRKGP 53 (101)
Q Consensus 35 fl~~~eRKv~a~~Q~R~GP 53 (101)
-+.+-||.|+=|.|+|+--
T Consensus 235 ~LgLsERQVKIWFQNRRAK 253 (317)
T KOG0848|consen 235 TLGLSERQVKIWFQNRRAK 253 (317)
T ss_pred hhCccHhhhhHhhhhhhHH
Confidence 4557899999999999865
Done!