Query psy15231
Match_columns 101
No_of_seqs 132 out of 1072
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_G Cytochrome B6F complex 47.5 31 0.001 18.6 3.6 18 36-53 16-33 (37)
2 1vf5_G Protein PET G; photosyn 35.9 26 0.00088 19.0 2.1 18 37-54 17-34 (37)
3 3tx3_A Uncharacterized protein 28.2 1.7E+02 0.0059 21.2 7.2 47 26-73 95-145 (249)
4 2jpk_A Bacteriocin lactococcin 24.5 33 0.0011 18.1 1.3 24 60-83 7-30 (35)
5 2kv5_A FST, putative uncharact 15.7 1.4E+02 0.0049 15.5 3.8 24 29-52 6-29 (33)
6 4erv_A Ryanodine receptor 3; m 15.0 52 0.0018 23.6 1.0 14 4-17 121-134 (207)
7 3hcn_A Ferrochelatase, mitocho 12.9 89 0.0031 24.1 1.8 25 47-76 237-262 (359)
8 1pp9_D Cytochrome C-1, cytochr 12.7 2.4E+02 0.0083 20.7 4.1 27 25-51 208-234 (241)
9 2knc_B Integrin beta-3; transm 12.6 1.9E+02 0.0066 17.5 3.0 9 8-16 5-13 (79)
10 4etv_A Ryanodine receptor 2; p 12.5 68 0.0023 23.0 1.0 16 4-19 123-138 (209)
No 1
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=47.55 E-value=31 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy15231 36 LTLLERKVLSFIQLRKGP 53 (101)
Q Consensus 36 l~~~eRKv~a~~Q~R~GP 53 (101)
.|..---+.|+.|.|+|-
T Consensus 16 vtlaGLfv~Ay~QyrRg~ 33 (37)
T 1q90_G 16 VTIAGLFVTAYLQYLRGD 33 (37)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 344444578999999985
No 2
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=35.86 E-value=26 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhccCCCCC
Q psy15231 37 TLLERKVLSFIQLRKGPN 54 (101)
Q Consensus 37 ~~~eRKv~a~~Q~R~GP~ 54 (101)
|..---+.|+.|.|+|-.
T Consensus 17 tl~GLfv~Ay~QyrRg~q 34 (37)
T 1vf5_G 17 TLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp HHHHHTHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 333445789999999963
No 3
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=28.21 E-value=1.7e+02 Score=21.21 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccc----hhHHHHHHHhh
Q psy15231 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIF----QPFSDAIKLYT 73 (101)
Q Consensus 26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~Gll----Q~~aD~lKLl~ 73 (101)
.+..++++||...+..|+.++...+.-|+ -+..++. +.+.|.+|-+.
T Consensus 95 ~va~~IaapF~~~LAE~VE~~l~g~~~~~-~~~~~~~~~l~r~l~~~l~~l~ 145 (249)
T 3tx3_A 95 TIMHLIAAPFNGLLAEKVERYESGESLGD-EGFLGLFKDIPRTLKREMQKLM 145 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCTT-CSSGGGSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCCCCc-cchhhHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999887765443 2233444 44455554444
No 4
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=24.47 E-value=33 Score=18.09 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHhhcccccccccc
Q psy15231 60 GIFQPFSDAIKLYTKEFFIPLKSN 83 (101)
Q Consensus 60 GllQ~~aD~lKLl~KE~i~p~~s~ 83 (101)
..+||-+|++|=+.|..+.--+-+
T Consensus 7 ~w~~pay~fi~g~~kg~~kegnk~ 30 (35)
T 2jpk_A 7 AWVDPAYEFIKGFGKGAIKEGNKD 30 (35)
T ss_dssp HHHHHHHHHHHHHTTTCTTTSCST
T ss_pred cccchHHHHHHHHhhhhhhccccc
Confidence 368999999999988766544433
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=15.71 E-value=1.4e+02 Score=15.53 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q psy15231 29 EHSGVAFLTLLERKVLSFIQLRKG 52 (101)
Q Consensus 29 vl~~~~fl~~~eRKv~a~~Q~R~G 52 (101)
..+.+|.+.|+.-++..++-++++
T Consensus 6 ~~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 345667777766666655555444
No 6
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
Probab=14.96 E-value=52 Score=23.59 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=10.3
Q ss_pred cCCCCCccchhhhh
Q psy15231 4 MGFEPGPVDRNAMS 17 (101)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (101)
-||.|.|+|+|.+-
T Consensus 121 ~~y~P~P~Dls~v~ 134 (207)
T 4erv_A 121 NSYSPAPLDLSNVV 134 (207)
T ss_dssp --CCCCCCCGGGCC
T ss_pred cCCCCCCccccccc
Confidence 48999999998653
No 7
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=12.95 E-value=89 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.3
Q ss_pred hccCCCCCcCCccccchhHH-HHHHHhhccc
Q psy15231 47 IQLRKGPNKRGVIGIFQPFS-DAIKLYTKEF 76 (101)
Q Consensus 47 ~Q~R~GP~~vg~~GllQ~~a-D~lKLl~KE~ 76 (101)
.|+|.||. -++||+. |.++-+.|+.
T Consensus 237 ~QSr~G~~-----~WL~P~t~d~l~~L~~~G 262 (359)
T 3hcn_A 237 WQSKVGPM-----PWLGPQTDESIKGLCERG 262 (359)
T ss_dssp EECCSCSS-----CBSSSBHHHHHHHHHHTT
T ss_pred EEcCCCCC-----CCCCCCHHHHHHHHHHcC
Confidence 48998975 5889987 5777776543
No 8
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=12.69 E-value=2.4e+02 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15231 25 TTTCEHSGVAFLTLLERKVLSFIQLRK 51 (101)
Q Consensus 25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~ 51 (101)
+++++++...+..++-|++.+-+..|+
T Consensus 208 vl~fL~il~~l~y~~kr~~W~~vk~~~ 234 (241)
T 1pp9_D 208 MLLMMGLLLPLVYAMKRHKWSVLKSRK 234 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 344555566666778888888887764
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.60 E-value=1.9e+02 Score=17.45 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=3.9
Q ss_pred CCccchhhh
Q psy15231 8 PGPVDRNAM 16 (101)
Q Consensus 8 ~~~~~~~~~ 16 (101)
|++.+.-+.
T Consensus 5 p~~~n~~~I 13 (79)
T 2knc_B 5 SKGPDILVV 13 (79)
T ss_dssp CSSSCSHHH
T ss_pred CCCCCchhh
Confidence 344444433
No 10
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus}
Probab=12.47 E-value=68 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.5
Q ss_pred cCCCCCccchhhhhhH
Q psy15231 4 MGFEPGPVDRNAMSGT 19 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (101)
-||.|.|+|+|.+--.
T Consensus 123 ~~y~P~P~dls~v~l~ 138 (209)
T 4etv_A 123 HGYSPRAIDMSNVTLS 138 (209)
T ss_dssp GGCCCCCCCGGGCCCC
T ss_pred CCCCCCCccccccccC
Confidence 5899999999965433
Done!