Query psy15231
Match_columns 101
No_of_seqs 132 out of 1072
Neff 5.7
Searched_HMMs 13730
Date Sat Aug 17 00:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1emoa2 g.3.11.1 (A:2167-2205) 46.6 2.9 0.00021 21.5 0.7 8 4-11 28-35 (39)
2 d1ppjd2 f.23.11.1 (D:196-241) 27.5 40 0.0029 17.4 3.7 26 26-51 14-39 (46)
3 d1pv9a1 c.55.2.1 (A:8-124) Ami 20.7 10 0.00074 22.1 0.1 8 2-9 23-30 (117)
4 d1lbqa_ c.92.1.1 (A:) Ferroche 13.9 42 0.003 23.9 2.1 24 47-75 238-262 (356)
5 d2i9wa2 g.74.1.1 (A:1-39) Hypo 13.1 33 0.0024 17.2 0.9 9 61-69 28-36 (39)
6 d1cy5a_ a.77.1.3 (A:) Apoptoti 12.7 36 0.0026 19.0 1.2 23 41-70 54-76 (93)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 12.3 1.3E+02 0.0092 16.9 4.3 14 39-52 89-102 (103)
8 d1dlja3 c.26.3.1 (A:295-402) U 11.1 53 0.0039 19.0 1.6 36 41-76 2-48 (108)
9 d3lyna_ a.19.1.1 (A:) Lysin {G 9.8 78 0.0056 19.6 2.1 22 31-53 9-30 (122)
10 d1qn2a_ a.3.1.1 (A:) Cytochrom 9.1 61 0.0045 18.7 1.3 12 48-59 22-33 (99)
No 1
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.60 E-value=2.9 Score=21.52 Aligned_cols=8 Identities=75% Similarity=1.605 Sum_probs=6.7
Q ss_pred cCCCCCcc
Q psy15231 4 MGFEPGPV 11 (101)
Q Consensus 4 ~~~~~~~~ 11 (101)
-||||||.
T Consensus 28 ~GFepgpm 35 (39)
T d1emoa2 28 EGFEPGPM 35 (39)
T ss_dssp SSSCCCSS
T ss_pred CCcCCCcc
Confidence 48999985
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.48 E-value=40 Score=17.43 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15231 26 TTCEHSGVAFLTLLERKVLSFIQLRK 51 (101)
Q Consensus 26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~ 51 (101)
++++.+..++..+.-|+..+.+-+|+
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~lKsrK 39 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVLKSRK 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccce
Confidence 34444556677788999999998875
No 3
>d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.73 E-value=10 Score=22.10 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=5.8
Q ss_pred cccCCCCC
Q psy15231 2 YLMGFEPG 9 (101)
Q Consensus 2 ~~~~~~~~ 9 (101)
|+|||+|.
T Consensus 23 YlTGf~~~ 30 (117)
T d1pv9a1 23 YFSGTSPL 30 (117)
T ss_dssp HHHSCCCS
T ss_pred eeeCcCCC
Confidence 77888763
No 4
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.87 E-value=42 Score=23.88 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=17.0
Q ss_pred hccCCCCCcCCccccchhHHH-HHHHhhcc
Q psy15231 47 IQLRKGPNKRGVIGIFQPFSD-AIKLYTKE 75 (101)
Q Consensus 47 ~Q~R~GP~~vg~~GllQ~~aD-~lKLl~KE 75 (101)
.|+|.||. -+++|..| .++.+.|+
T Consensus 238 fQSr~g~~-----~WL~P~t~~~le~l~~g 262 (356)
T d1lbqa_ 238 WQSQVGPK-----PWLGAQTAEIAEFLGPK 262 (356)
T ss_dssp EECCCSSS-----CBCSCBHHHHHHHHGGG
T ss_pred eeccccCC-----CCCCCchHHHHHHhccC
Confidence 48888885 58888765 66666543
No 5
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=13.10 E-value=33 Score=17.16 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=6.8
Q ss_pred cchhHHHHH
Q psy15231 61 IFQPFSDAI 69 (101)
Q Consensus 61 llQ~~aD~l 69 (101)
--|||.|++
T Consensus 28 ccqpyhd~l 36 (39)
T d2i9wa2 28 CCQPYHDGL 36 (39)
T ss_dssp TTHHHHHHH
T ss_pred hccchhhhh
Confidence 358999975
No 6
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.74 E-value=36 Score=19.02 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=16.2
Q ss_pred HHHHHHhccCCCCCcCCccccchhHHHHHH
Q psy15231 41 RKVLSFIQLRKGPNKRGVIGIFQPFSDAIK 70 (101)
Q Consensus 41 RKv~a~~Q~R~GP~~vg~~GllQ~~aD~lK 70 (101)
|+++..++ ++|++ -++.|.|+++
T Consensus 54 ~~LL~~L~-~kg~~------af~~F~~aL~ 76 (93)
T d1cy5a_ 54 AMLIKMIL-KKDND------SYVSFYNALL 76 (93)
T ss_dssp HHHHHHHH-TSCHH------HHHHHHHHHH
T ss_pred HHHHHHHH-hcChh------HHHHHHHHHH
Confidence 56666666 68885 6777777776
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.33 E-value=1.3e+02 Score=16.89 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=7.3
Q ss_pred HHHHHHHHhccCCC
Q psy15231 39 LERKVLSFIQLRKG 52 (101)
Q Consensus 39 ~eRKv~a~~Q~R~G 52 (101)
+-.....+-|+|+|
T Consensus 89 i~~~~~~~~~~rr~ 102 (103)
T d1r3jc_ 89 LATWFVGREQERRG 102 (103)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 33445555566654
No 8
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=11.14 E-value=53 Score=19.02 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHHhccCCCCCc-CCccccc----------hhHHHHHHHhhccc
Q psy15231 41 RKVLSFIQLRKGPNK-RGVIGIF----------QPFSDAIKLYTKEF 76 (101)
Q Consensus 41 RKv~a~~Q~R~GP~~-vg~~Gll----------Q~~aD~lKLl~KE~ 76 (101)
+|+...+..+..|.+ +|.+|+- =|.-|.++.+.|+.
T Consensus 2 k~ii~~l~~~~~~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g 48 (108)
T d1dlja3 2 KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKD 48 (108)
T ss_dssp HHHHHHHTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSS
T ss_pred HHHHHHHHhccCCCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccc
Confidence 567778888888876 8888873 24556677665554
No 9
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens) [TaxId: 6456]}
Probab=9.78 E-value=78 Score=19.64 Aligned_cols=22 Identities=9% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q psy15231 31 SGVAFLTLLERKVLSFIQLRKGP 53 (101)
Q Consensus 31 ~~~~fl~~~eRKv~a~~Q~R~GP 53 (101)
+=+..+.+++||..+++| |.|-
T Consensus 9 lK~qIIagfDrkl~~wl~-~Hg~ 30 (122)
T d3lyna_ 9 MKIQIISGFDRQLTAWLR-VHGR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHGG
T ss_pred HHHHHHHHHhHHHHHHHH-HcCC
Confidence 344567799999999999 5664
No 10
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}
Probab=9.09 E-value=61 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=8.3
Q ss_pred ccCCCCCcCCcc
Q psy15231 48 QLRKGPNKRGVI 59 (101)
Q Consensus 48 Q~R~GP~~vg~~ 59 (101)
++|.|||--|..
T Consensus 22 ~~~~GP~L~gi~ 33 (99)
T d1qn2a_ 22 KNGVGPTLKGVV 33 (99)
T ss_dssp SCSSSCCCTTCT
T ss_pred ccCcCCcccccc
Confidence 468999865544
Done!