RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15231
(101 letters)
>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 306
Score = 116 bits (294), Expect = 2e-33
Identities = 45/68 (66%), Positives = 53/68 (77%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAFLTLLERKVL +IQ+RKGPNK G +GI QPFSDAIKL+TKE PL SN Y+ +P
Sbjct: 18 SVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSP 77
Query: 92 LISLGVSL 99
+ SL +SL
Sbjct: 78 VFSLFLSL 85
>gnl|CDD|177201 MTH00143, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 307
Score = 107 bits (269), Expect = 8e-30
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAF TLLERK L + Q+RKGPNK G++G+ QP +DA+KL+TKEF P SN +P+++ P
Sbjct: 17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAP 76
Query: 92 LISLGVSLG 100
+SL ++L
Sbjct: 77 CLSLILALL 85
>gnl|CDD|214465 MTH00225, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 305
Score = 101 bits (254), Expect = 1e-27
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAF TLLERKVL +IQLRKGPNK G++G+ QPF+DA+KL+TKE P SN PY++ P
Sbjct: 17 SVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAP 76
Query: 92 LISLGVSLGT 101
++SL +SL
Sbjct: 77 ILSLILSLIL 86
>gnl|CDD|214463 MTH00218, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 311
Score = 90.4 bits (225), Expect = 2e-23
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAFLTLLERKVL ++QLRKGPN G G+ QP +D +KL+ KE P S+ + + + P+
Sbjct: 19 VAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPI 78
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 79 LALTLAL 85
>gnl|CDD|109212 pfam00146, NADHdh, NADH dehydrogenase.
Length = 309
Score = 87.3 bits (217), Expect = 3e-22
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAFLTLLERKVL ++Q RKGPN G +G+ QPF+D +KL+ KE +P S+ + + + P
Sbjct: 16 SVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEPVVPSTSSPFLFTLAP 75
Query: 92 LISLGVSL 99
+++L ++L
Sbjct: 76 VLALTLAL 83
>gnl|CDD|214452 MTH00195, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 307
Score = 85.6 bits (212), Expect = 2e-21
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAF TLLERK+L +IQLRKGPNK G G+ QP +DA+KL+ KE P S+ + ++ P+
Sbjct: 19 VAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPV 78
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 79 LALALAL 85
>gnl|CDD|177127 MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 324
Score = 83.6 bits (207), Expect = 1e-20
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
+A+LTL ERKVL +IQ RKGPN GV G+ QP +D +KL+TKE IP +N + Y + P+
Sbjct: 19 IAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPI 78
Query: 93 ISLGVSL 99
+SL ++
Sbjct: 79 LSLTLAF 85
>gnl|CDD|164761 MTH00216, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 327
Score = 82.5 bits (204), Expect = 3e-20
Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VA+LTL ERKVL ++Q RKGPN GV G+ QPF+D +KL+TKE IP +N + Y V P+
Sbjct: 23 VAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPV 82
Query: 93 ISLGVSL 99
+S ++L
Sbjct: 83 LSFTLAL 89
>gnl|CDD|214409 MTH00040, ND1, NADH dehydrogenase subunit 1; Validated.
Length = 323
Score = 81.2 bits (201), Expect = 8e-20
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAFLTL+ERKVL ++Q RKGPN G G+ QPF+D +KL+ KE P ++ Y ++ +P
Sbjct: 20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSP 79
Query: 92 LISLGVSL 99
++ L ++L
Sbjct: 80 VLFLFLAL 87
>gnl|CDD|177166 MTH00104, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 318
Score = 80.8 bits (200), Expect = 8e-20
Identities = 36/67 (53%), Positives = 51/67 (76%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAFLTL+ERKVL ++QLRKGPN G G+ QPF+DA+KL+TKE PL S+ + + P+
Sbjct: 17 VAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPI 76
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 77 LALTLAL 83
>gnl|CDD|214422 MTH00111, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 323
Score = 79.9 bits (198), Expect = 2e-19
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAFLTLLERK+L ++QLRKGPN G G+ QP +D +KL+ KE P S+ + +TP+
Sbjct: 22 VAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 82 LALLLAL 88
>gnl|CDD|164586 MTH00010, ND1, NADH dehydrogenase subunit 1; Validated.
Length = 311
Score = 79.8 bits (197), Expect = 2e-19
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
+AF TLLERK L + QLRKGPNK G+ GI QPF+DAIKL+TKE P +N P+ P+
Sbjct: 20 MAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPM 79
Query: 93 ISLGVSL 99
+SL ++L
Sbjct: 80 MSLILAL 86
>gnl|CDD|177192 MTH00134, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 324
Score = 74.6 bits (184), Expect = 2e-17
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAFLTLLERKVL ++QLRKGPN G G+ QP +D +KL+ KE P S+ + + TP+
Sbjct: 23 VAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 83 LALTLAL 89
>gnl|CDD|214418 MTH00071, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 322
Score = 72.3 bits (178), Expect = 1e-16
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VAFLTL+ERKVL ++QLRKGPN G +G+ QP +D +KL+ KE P S+ + + P
Sbjct: 22 VAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81
Query: 93 ISLGVSL 99
++L ++L
Sbjct: 82 MALTLAL 88
>gnl|CDD|223937 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H)
[Energy production and conversion].
Length = 332
Score = 72.3 bits (178), Expect = 2e-16
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
AFL ERK+ + +QLR GPN+ G G+ Q +DAIKL+ KE IP ++ + + + P+
Sbjct: 29 GAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFLFTLAPI 88
Query: 93 ISLGVSL 99
I+L +
Sbjct: 89 IALIPAF 95
>gnl|CDD|235692 PRK06076, PRK06076, NADH:ubiquinone oxidoreductase subunit H;
Provisional.
Length = 322
Score = 70.6 bits (174), Expect = 6e-16
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
VAFL ERKVL+ +QLR GPN+ G G+ Q +D IKL KE IP ++ + + P
Sbjct: 26 CVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAP 85
Query: 92 LISL 95
+I+
Sbjct: 86 VIAF 89
>gnl|CDD|177108 MTH00029, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 343
Score = 68.9 bits (168), Expect = 3e-15
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
VA+LTL ERKVL +Q RKGP G G+ QP +D +KL TKE IP ++N + Y++ P+
Sbjct: 24 VAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83
Query: 93 ISLGVSL 99
IS +++
Sbjct: 84 ISFTLAI 90
>gnl|CDD|177130 MTH00058, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 293
Score = 66.5 bits (163), Expect = 1e-14
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTK 74
VAF L ERK+L +IQLRKGPNK G++G+ Q F+D +KL K
Sbjct: 18 VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVK 59
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 64.1 bits (157), Expect = 1e-13
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
+AF+TL ER +L Q R GPNK +G+ Q D +KL KE +PL S+D + + P
Sbjct: 12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVP 71
Query: 92 LISLGVSL 99
+S V
Sbjct: 72 GVSFVVMY 79
>gnl|CDD|214341 CHL00032, ndhA, NADH dehydrogenase subunit 1.
Length = 363
Score = 46.9 bits (112), Expect = 2e-07
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
GV + LER++ + IQ R GP G +GI Q +D KL KE +P + +
Sbjct: 43 GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGD------IR 96
Query: 92 LISLGVSL 99
L S+G S+
Sbjct: 97 LFSIGPSI 104
>gnl|CDD|223723 COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production
and conversion].
Length = 309
Score = 45.4 bits (108), Expect = 6e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 39 LERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS 98
+ RKV + IQ R GP I QP+ D +KL KE IP S+ + + + P ++LG
Sbjct: 27 ITRKVRARIQRRIGP------PILQPYYDTLKLLGKETVIPA-SSGWLFRLAPYLALGTL 79
Query: 99 L 99
L
Sbjct: 80 L 80
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 27.3 bits (61), Expect = 1.7
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 65 FSDAIKLYTKEFFIPLKS 82
FS IKLYT E IPL S
Sbjct: 252 FSSKIKLYTGE--IPLFS 267
>gnl|CDD|215139 PLN02250, PLN02250, lipid phosphate phosphatase.
Length = 314
Score = 26.8 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 58 VIGIFQPFSDAI-KLYTKEFFIPLKSNDYPYWVTPLISL 95
V+ + +PF + K + PL+ N P+W PLI++
Sbjct: 38 VLNVIEPFHRFVGKDMLTDLSYPLQDNTIPFWAVPLIAI 76
>gnl|CDD|180528 PRK06321, PRK06321, replicative DNA helicase; Provisional.
Length = 472
Score = 26.3 bits (58), Expect = 3.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 31 SGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKL 71
FL L+ + +F Q +G + + GI F D K+
Sbjct: 179 KDKPFLLQLQERQEAFQQSAQGDSSPMISGIPTHFIDLDKM 219
>gnl|CDD|223558 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 356
Score = 25.7 bits (57), Expect = 4.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 29 EHSGVAFLTLLERKVLSFIQLRKGP 53
EH G+ + T+ +RK L L+ P
Sbjct: 227 EHDGLMYYTIGQRKGLGIGGLKGEP 251
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 25.8 bits (57), Expect = 5.2
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVI 59
+ +H +T G A L LE KVL I N R I
Sbjct: 364 DKMSHIST---GGGASLEFLEGKVLPGIACLLDKNPRKPI 400
>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1. This family consists of several
AMMECR1 as well as several uncharacterized proteins.
The contiguous gene deletion syndrome AMME is
characterized by Alport syndrome, midface hypoplasia,
mental retardation and elliptocytosis and is caused by
a deletion in Xq22.3, comprising several genes
including COL4A5, FACL4 and AMMECR1. This family
contains sequences from several eukaryotic species as
well as archaebacteria and it has been suggested that
the AMMECR1 protein may have a basic cellular function,
potentially in either the transcription, replication,
repair or translation machinery.
Length = 172
Score = 24.8 bits (55), Expect = 8.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 39 LERKVLSFIQLRKGPNKRGVIGIFQPFSD 67
L K F+ L+K RG IG F+P
Sbjct: 29 LNEKRGVFVTLKKRGELRGCIGTFEPVRP 57
>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB. FeoB (773 amino
acids in E. coli), a cytoplasmic membrane protein
required for iron(II) update, is encoded in an operon
with FeoA (75 amino acids), which is also required, and
is regulated by Fur. There appear to be two copies in
Archaeoglobus fulgidus and Clostridium acetobutylicum
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 591
Score = 25.1 bits (55), Expect = 9.7
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 58 VIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT 101
+ QP D I+ +KS YW+ L+ G+ G
Sbjct: 267 TFLVGQPLVDLIETGFSFLSEAVKSFIGNYWLASLLGDGLIGGV 310
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.425
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,123,961
Number of extensions: 420002
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 32
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)