RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15231
         (101 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.17
 Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 44/119 (36%)

Query: 3   LMGFEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVL--SFIQLR---KGPNKR- 56
           L  FE        + G +   H    +       TL++ K L  ++I  R   K P  + 
Sbjct: 88  LTEFE-----NCYLEGND--IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140

Query: 57  --------------GVIGIF--Q-----PFSDAIKLYTKEFFIPLKSNDYPYWVTPLIS 94
                          ++ IF  Q      F +   LY            Y   V  LI 
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY----------QTYHVLVGDLIK 189



 Score = 25.0 bits (54), Expect = 5.3
 Identities = 1/15 (6%), Positives = 5/15 (33%), Gaps = 4/15 (26%)

Query: 57   GVIGIFQPFSDAIKL 71
             V+         +++
Sbjct: 1775 DVM----SIESLVEV 1785


>1yx0_A Hypothetical protein YSNE; NESG, GFT structral genomics, SR220,
           structural genomics, PSI, protein structure initiative;
           NMR {Bacillus subtilis subsp} SCOP: d.108.1.1
          Length = 159

 Score = 27.8 bits (62), Expect = 0.50
 Identities = 7/20 (35%), Positives = 7/20 (35%)

Query: 60  GIFQPFSDAIKLYTKEFFIP 79
           G    F  A KLY    F  
Sbjct: 112 GSMASFEPARKLYESFGFQY 131


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 4.4
 Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 10/76 (13%)

Query: 21  SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
            +   TT       FL+      +S            V  +         L  +   +P 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPR 320

Query: 81  KSNDYPYWVTPL-ISL 95
           +         P  +S+
Sbjct: 321 EVLT----TNPRRLSI 332


>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics,
           NPPSFA; 2.30A {Streptomyces coelicolor}
          Length = 340

 Score = 25.1 bits (54), Expect = 5.1
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 11/48 (22%)

Query: 54  NKRGVIGIFQPFSDAIKLYT-----------KEFFIPLKSNDYPYWVT 90
            + G +G   P+ D  + +            ++ F  L+S DY   V+
Sbjct: 246 GRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVS 293


>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
           rossmann fold, polyamine biosynthesis, spermidine
           biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
           3o4f_A
          Length = 294

 Score = 24.5 bits (54), Expect = 6.5
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 4/32 (12%)

Query: 49  LRKGPNKRGVIGIFQ---PFSDAIKLYTKEFF 77
           + +      VI I     P      L+T  F+
Sbjct: 151 VNQTSQTFDVI-ISDCTDPIGPGESLFTSAFY 181


>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8,
          structural genomics, PSI, protein structure initiative;
          2.11A {Methanosarcina mazei} SCOP: d.309.1.1
          Length = 207

 Score = 24.5 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 38 LLERKVLSFIQLRKGPNKRGVIGIFQP 64
          + E     F+ L +G   RG IG   P
Sbjct: 40 VFEEYRGVFVTLTEGGLLRGCIGHPYP 66


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,502,956
Number of extensions: 74515
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 13
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)