RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15231
         (101 letters)



>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 312

 Score = 25.1 bits (54), Expect = 1.6
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 49  LRKGPNKRGVIGI--FQPFSDAIKLYTKEFF--IPLKSNDYPYWVTPLIS 94
           L+   N+  VI      P   A  L+ + ++  +     +     +   S
Sbjct: 173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222


>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 274

 Score = 24.7 bits (53), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 46  FIQLRKGPNKRGVIGI--FQPFSDAIKLYTKEFF 77
           F+ + K  N+  VI +   +P   A+ L+TK F+
Sbjct: 139 FMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFY 172


>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
          {Methanosarcina mazei [TaxId: 2209]}
          Length = 199

 Score = 24.0 bits (52), Expect = 3.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 29 EHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQP 64
          + SGV    + E     F+ L +G   RG IG   P
Sbjct: 31 DASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYP 66


>d3c8ga1 a.285.1.1 (A:1-168) Putative transcriptional regulator YggD
           {Shigella flexneri [TaxId: 623]}
          Length = 168

 Score = 23.6 bits (51), Expect = 5.0
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 37  TLLERKVLSFIQLRKGPNKRG-VIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISL 95
           TL E  VL   QL    N    +          I+ +    F+        Y V PL++ 
Sbjct: 3   TLTEDDVLE--QLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60

Query: 96  GVSLGT 101
              L  
Sbjct: 61  SGPLDD 66


>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 23.2 bits (49), Expect = 8.8
 Identities = 4/29 (13%), Positives = 11/29 (37%)

Query: 58  VIGIFQPFSDAIKLYTKEFFIPLKSNDYP 86
           +     P   A  L+ + ++  +K+    
Sbjct: 156 ITDSSDPMGPAESLFKESYYQLMKTALKE 184


>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 290

 Score = 23.2 bits (49), Expect = 8.9
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 58  VIGIFQPFSDAIKLYTKEFF 77
           ++    P   A +L+ K FF
Sbjct: 159 IVDSSDPIGPAKELFEKPFF 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,963
Number of extensions: 14152
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)