BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15235
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T KC+VT P +I W K N+ I L ++ ++T+ K T DAGQY+C
Sbjct: 24 TFKCHVTGTAP---IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ ++ AQ + KL + V + E R EC + GSP V W ++T
Sbjct: 81 SNVAGKDSCS-AQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDET 138
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + ++S + +VL++ ++ D G+Y C +N
Sbjct: 139 EIQESSKFRMS----FVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 128 KCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187
+C + P + +++WYK I E+++ +S + + +V+D+G Y+C +
Sbjct: 120 ECKIGGSP---EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 188 PKSTNTTPLA-QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
+ ++ + + + + VETL +G + LEC + G+PP V W +
Sbjct: 177 AAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWH-KDKRE 232
Query: 247 FRSQGRIK-LSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
RS + K +SE+ T+ +L +D AD G Y C +N
Sbjct: 233 LRSGKKYKIMSEN--FLTSIHILNVDS---ADIGEYQCKASN 269
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
GE +C V G+ P + W N R G K++ T L + + T D G
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTAT----LTVLKVTKGDAG 74
Query: 280 NYYCHGNNVATRNS 293
Y C+ +NVA ++S
Sbjct: 75 QYTCYASNVAGKDS 88
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T KC+VT P +I W K N+ I L ++ ++T+ K T DAGQY+C
Sbjct: 216 TFKCHVTGTAP---IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 272
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ ++ AQ + KL + V + E R EC + GSP V W ++T
Sbjct: 273 SNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDET 330
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + ++S + +VL++ ++ D G+Y C +N
Sbjct: 331 EIQESSKFRMS----FVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
P +C + P Q+ WYK + + + L + ++ I +T GQY+C
Sbjct: 118 PVAFECRINGSEP---LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 184 RLIDPKST--NTTPLAQADFDVI----MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTV 237
+P T ++ L ++ +V +KP ++ + GE +C V G+ P +
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPV-----SVDLALGESGTFKCHVTGTAPIKI 229
Query: 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
W N R G K++ T L + + T D G Y C+ +NVA ++S
Sbjct: 230 TWAKDNRE-IRPGGNYKMTLVENTAT----LTVLKVTKGDAGQYTCYASNVAGKDS 280
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 128 KCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187
+C + P + +++WYK I E+++ +S + + +V+D+G Y+C +
Sbjct: 312 ECKIGGSP---EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Query: 188 PKSTNTTPLA-QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
+ ++ + + + + VETL +G + LEC + G+PP V W +
Sbjct: 369 AAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWH-KDKRE 424
Query: 247 FRSQGRIK-LSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
RS + K +SE+ T+ +L +D AD G Y C +N
Sbjct: 425 LRSGKKYKIMSEN--FLTSIHILNVDS---ADIGEYQCKASN 461
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
L+C + PP +Q+ W+K + + + SI I D G+Y C
Sbjct: 404 LECELQGTPP---FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC--- 457
Query: 187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIE---GEKLRLECLVVGSPPPTVEWRIGN 243
K++N + +K + V+ L+ I GE+++L+ + G+ P +V W
Sbjct: 458 --KASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK 515
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
R I +S T LQ A A+ G Y C N A
Sbjct: 516 GEIVRESDNIWISYSENIAT----LQFSRAEPANAGKYTCQIKNEA 557
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
P TL+C V P + +I WYK + + A + + S+ I K D G+Y+C
Sbjct: 22 PITLQCKVDGTP---EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 184 RLIDPKSTNTTPLAQADFDVIMK-----PT-AKLVETLTVIEGEKLRLECLVVGSPPPTV 237
K+ N+ + +++K P+ A+ ++ + G + EC + GS P V
Sbjct: 79 -----KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV 133
Query: 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
W + + ++ S T LQI + + G Y C +N
Sbjct: 134 SW-YKDGELLKDDANLQTSFIHNVAT----LQILQTDQSHVGQYNCSASN 178
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T KC+VT P +I W K N+ I L ++ ++T+ K T DAGQY+C
Sbjct: 24 TFKCHVTGTAP---IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ ++ AQ + KL + V + E R EC + GSP V W ++T
Sbjct: 81 SNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDET 138
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + ++S + +VL++ ++ D G+Y C +N
Sbjct: 139 EIQESSKFRMS----FVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 128 KCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187
+C + P + +++WYK I E+++ +S + + +V+D+G Y+C +
Sbjct: 120 ECKIGGSP---EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 188 PKSTNTTPLA-QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
+ ++ + + + + VETL +G + LEC + G+PP V W +
Sbjct: 177 AAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWH-KDKRE 232
Query: 247 FRSQGRIK-LSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
RS + K +SE+ T+ +L +D AD G Y C +N
Sbjct: 233 LRSGKKYKIMSEN--FLTSIHILNVDS---ADIGEYQCKASN 269
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
GE +C V G+ P + W N R G K++ T L + + T D G
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTAT----LTVLKVTKGDAG 74
Query: 280 NYYCHGNNVATRNS 293
Y C+ +NVA ++S
Sbjct: 75 QYTCYASNVAGKDS 88
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 125 FTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
T C + SP P I W++ K I E + L S +T+R D G Y C
Sbjct: 22 MTFSCRASGSPEPA----ISWFRNGKLIEENEKYI--LKGSNTELTVRNIINSDGGPYVC 75
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
R + + QA V ++P ++ T E ++ L C G P P + W+
Sbjct: 76 RATNKAGEDEK---QAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 244 DTYFRSQGRIKLSEHPE-KGT-ANSVLQIDEATMADRGNYYCH 284
D + ++G L E KG +S L I + ++D G Y C
Sbjct: 133 DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
T GE++ C GSP P + W FR+ I+ +E +N+ L +
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISW-------FRNGKLIEENEKYILKGSNTELTVRNIIN 67
Query: 276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+D G Y C N A + + +AF+ V V+
Sbjct: 68 SDGGPYVCRATNKAGEDEK--QAFLQVFVQ 95
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
L CN + PG Y+ W T+ ++Q+ ++ I +T D G YSC
Sbjct: 120 LPCNPPAHYPGLSYR--WLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLAT 177
Query: 187 DPKSTNT----TPLAQADFDV----IMKPTAKL---VETLTVIEGEKLRLECLVVGSPPP 235
+T + AQ + + P+ K ET ++ G+++ LEC G+P P
Sbjct: 178 SHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALV-GQQVTLECFAFGNPVP 236
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
++WR ++ S P+ TA LQI + D G Y C N R++
Sbjct: 237 RIKWR-----------KVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDT 283
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 141 QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQAD 200
+I W K + S LS + T ++ ++ I + +D G Y C + K +T Q
Sbjct: 237 RIKWRKVDGS------LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTV---QGR 287
Query: 201 FDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP 259
V +P K++ G LR C G P PTV W + N SQ R+++
Sbjct: 288 IIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRW-LRNGEPLASQNRVEV---- 342
Query: 260 EKGTANSVLQIDEATMADRGNYYCHGNN 287
L+ + ++ D G Y C N
Sbjct: 343 ----LAGDLRFSKLSLEDSGMYQCVAEN 366
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIM-----KPTAK 210
++Q ++ I K D G Y+C + + + + TPL + D +M K +
Sbjct: 151 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN-DGVMGEYEPKIEVQ 209
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
ET+ +G ++LEC +G+P PT+ WR R+ G+ ++ + +N +L+I
Sbjct: 210 FPETVPAEKGTTVKLECFALGNPVPTILWR-------RADGK-PIARKARRHKSNGILEI 261
Query: 271 DEATMADRGNYYC-----HGNNVA----TRNSQPN 296
D G+Y C G NVA T +QPN
Sbjct: 262 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 32/199 (16%)
Query: 99 FIPRMNAITGNYDIEPKYKV-FEYRVP------FTLKC-NVTSPPPGDDYQIVWYKGN-K 149
I R + + G Y EPK +V F VP L+C + +P P I+W + + K
Sbjct: 191 LILRNDGVMGEY--EPKIEVQFPETVPAEKGTTVKLECFALGNPVP----TILWRRADGK 244
Query: 150 SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT- 208
I R +S + I +DAG Y C + + N +A+ +P
Sbjct: 245 PIAR----KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN---VAKGQLTFYAQPNW 297
Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
+++ + V E + EC G P PT W + N ++ RI++ E+GT L
Sbjct: 298 VQIINDIHVAMEESVFWECKANGRPKPTYRW-LKNGDPLLTRDRIQI----EQGT----L 348
Query: 269 QIDEATMADRGNYYCHGNN 287
I ++D G Y C N
Sbjct: 349 NITIVNLSDAGMYQCVAEN 367
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236
DAG Y C + T + A+ F + + T++V G+ + L C G PP +
Sbjct: 73 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHS 129
Query: 237 VE----WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
E W ++ R E T N L I + +D GNY C N T
Sbjct: 130 GELSYAWIFNEYPSYQDNRRFVSQE-----TGN--LYIAKVEKSDVGNYTCVVTNTVT 180
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 219 EGEKLRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
E +K++L C V G+P P + W++ G D R + + S+L + D
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-------GSLLINNPNKTQD 73
Query: 278 RGNYYCHGNN 287
G Y C N
Sbjct: 74 AGTYQCIATN 83
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIM-----KPTAK 210
++Q ++ I K D G Y+C + + + + TPL + D +M K +
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN-DGVMGEYEPKIEVQ 210
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
ET+ +G ++LEC +G+P PT+ WR R+ G+ ++ + +N +L+I
Sbjct: 211 FPETVPAEKGTTVKLECFALGNPVPTILWR-------RADGK-PIARKARRHKSNGILEI 262
Query: 271 DEATMADRGNYYC-----HGNNVA----TRNSQPN 296
D G+Y C G NVA T +QPN
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 32/199 (16%)
Query: 99 FIPRMNAITGNYDIEPKYKV-FEYRVP------FTLKC-NVTSPPPGDDYQIVWYKGN-K 149
I R + + G Y EPK +V F VP L+C + +P P I+W + + K
Sbjct: 192 LILRNDGVMGEY--EPKIEVQFPETVPAEKGTTVKLECFALGNPVP----TILWRRADGK 245
Query: 150 SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT- 208
I R +S + I +DAG Y C + + N +A+ +P
Sbjct: 246 PIAR----KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN---VAKGQLTFYAQPNW 298
Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
+++ + V E + EC G P PT W + N ++ RI++ E+GT L
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRW-LKNGDPLLTRDRIQI----EQGT----L 349
Query: 269 QIDEATMADRGNYYCHGNN 287
I ++D G Y C N
Sbjct: 350 NITIVNLSDAGMYQCVAEN 368
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236
DAG Y C + T + A+ F + + T++V G+ + L C G PP +
Sbjct: 74 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHS 130
Query: 237 VE----WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
E W ++ R E T N L I + +D GNY C N T
Sbjct: 131 GELSYAWIFNEYPSYQDNRRFVSQE-----TGN--LYIAKVEKSDVGNYTCVVTNTVT 181
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 219 EGEKLRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
E +K++L C V G+P P + W++ G D R + + S+L + D
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-------GSLLINNPNKTQD 74
Query: 278 RGNYYCHGNN 287
G Y C N
Sbjct: 75 AGTYQCIATN 84
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
LKC V P I W K + + S + ++ I + D+G Y C
Sbjct: 141 LKCEVIGDP---MPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR 197
Query: 187 DPKSTNTTPLAQADFDVIMKPTA-------KLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
+P ST T +A+ ++ P + + IEG+ LEC V G PPP+ W
Sbjct: 198 NPASTRTG--NEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
R + I+L S L I T D G Y C
Sbjct: 256 -------LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
L+C V+ PPP W +G + I ++ L S ++ I T DD+G Y+C
Sbjct: 240 VLECCVSGYPPP----SFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTC- 292
Query: 185 LIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
++ K+ N + A A+ V++ P L E + EC V G P PTV W
Sbjct: 293 VVTYKNENIS--ASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 244 DT-----YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
D YF+ G S L+I +D G Y C N A
Sbjct: 351 DVVIPSDYFQIVG-------------GSNLRILGVVKSDEGFYQCVAENEA 388
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E++T G+ + L+C V+G P PT+ W+ G ++ P + LQI
Sbjct: 129 ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-----SGALQISR 183
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
D G Y C N A+ + NEA V +
Sbjct: 184 LQPGDSGVYRCSARNPASTRTG-NEAEVRI 212
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--- 194
DD W + + ++Q+ ++ I D G YSC + P T +
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 195 --PLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
PL A +V + + + G+ + LEC +G+P P + WR
Sbjct: 98 FIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR--------- 148
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
+ + E T+ +VL+I + D G Y C N+ R ++A +YV+
Sbjct: 149 KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI--RGKDKHQARIYVQ 200
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-S 167
N D+ P+ KV E T+ C + P D +I W+K + + + +GR+ Q + +
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPV-DPSASNGRIKQLRSGA 165
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT----VIEGEKL 223
+ I + D G+Y C + S + A+ V ++ A L ++ G +
Sbjct: 166 LQIESSEETDQGKYEC--VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV 223
Query: 224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+ C+ VGSP P V+W QG L+ + +VL++ + + D NY C
Sbjct: 224 NITCVAVGSPMPYVKWM---------QGAEDLTPEDDMPVGRNVLELTD--VKDSANYTC 272
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
D I W+ N + + + D ++TI +DDAG Y C + T +
Sbjct: 32 DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
Query: 196 LAQAD-FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-IGNDTYFRSQGRI 253
F +M A + EGE + C VV S PPT+ W+ G D + R
Sbjct: 92 TVNVKIFQKLMFKNAPTPQEFK--EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ +N+ LQI D G Y C G +A
Sbjct: 150 IV-------LSNNYLQIRGIKKTDEGTYRCEGRILA 178
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
D I W+ N + + + D ++TI +DDAG Y C + T +
Sbjct: 32 DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
Query: 196 LAQAD-FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-IGNDTYFRSQGRI 253
F +M A + EGE + C VV S PPT+ W+ G D + R
Sbjct: 92 TVNVKIFQKLMFKNAPTPQEFK--EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ +N+ LQI D G Y C G +A
Sbjct: 150 IV-------LSNNYLQIRGIKKTDEGTYRCEGRILA 178
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSC----------RLIDPKSTNTTPLAQADFDVIMKPTAK 210
++Q+ ++ I KT D G YSC + + K + + A+ AK
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
+ G+ + LEC G+P P ++WR + SQ LS P +L I
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG----SQTSKWLSSEP-------LLHI 261
Query: 271 DEATMADRGNYYCHGNNVATRNS 293
D G Y C N+ R++
Sbjct: 262 QNVDFEDEGTYECEAENIKGRDT 284
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 34/169 (20%)
Query: 126 TLKC-NVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
TL+C +P P QI W K + S T + S+ + I+ +D G Y C
Sbjct: 226 TLECFAFGNPVP----QIKWRKLDGSQT------SKWLSSEPLLHIQNVDFEDEGTYECE 275
Query: 185 LIDPKSTNTTP-----LAQADF-DVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
+ K +T AQ D+ DVI A + G LR C+ G P P V
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADI--------GSDLRWSCVASGKPRPAVR 327
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
W + + SQ RI++S L+ + + D G Y C N
Sbjct: 328 W-LRDGQPLASQNRIEVS--------GGELRFSKLVLEDSGMYQCVAEN 367
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C + PP W + + RL + D + DAG Y C
Sbjct: 26 TLTCRARANPPA---TYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVA 81
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-----TVEWR 240
+ + T + A F + + +A+ + + + EG + C SPPP + W
Sbjct: 82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC----SPPPHYPALSYRWL 137
Query: 241 IGN-DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+ + + GR +S+ T N L I + +D GNY C
Sbjct: 138 LNEFPNFIPADGRRFVSQT----TGN--LYIAKTEASDLGNYSC 175
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
WYK + T +A L+ R+ Q ++ I+ V+D+G+Y C + + +S T
Sbjct: 252 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 311
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
A + P T TV G C G+P TV W + +
Sbjct: 312 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 351
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
G + SVL+I+ D+G Y C N
Sbjct: 352 KAIGHSESVLRIESVKKEDKGMYQCFVRN 380
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
T P D +W+ N+S+ + L +L+ ++T+ T +D Y C +P S
Sbjct: 132 TCEPETQDATYLWWVNNQSLPVSPRL--QLSNGNRTLTLFNVTRNDTASYKCETQNPVSA 189
Query: 192 NTTPLAQADFDVIMKPTAKLVETLTVI--EGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
+ +V+ P A + L GE L L C +PP W + N T+ +S
Sbjct: 190 RRS--DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQS 246
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
L I T+ + G+Y C +N T
Sbjct: 247 TQE---------------LFIPNITVNNSGSYTCQAHNSDT 272
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 22/161 (13%)
Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
T P + +W+ +S+ + L +L+ ++T+ T +DA Y C + + S
Sbjct: 488 TCEPEAQNTTYLWWVNGQSLPVSPRL--QLSNGNRTLTLFNVTRNDARAYVCGIQNSVSA 545
Query: 192 NTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
N + DV+ P ++ + + G L L C +P P WRI
Sbjct: 546 NRS--DPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING------ 597
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
P++ T VL I + T + G Y C +N+AT
Sbjct: 598 --------IPQQHT--QVLFIAKITPNNNGTYACFVSNLAT 628
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 103 MNAITGNYD--IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR 160
+N + G D I P Y + V +L C+ S PP Q W + G
Sbjct: 375 LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA---QYSWL-----------IDGN 420
Query: 161 LTQSKDSITIRKTTVDDAGQYSCR 184
+ Q + I T ++G Y+C+
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQ 444
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
L C+ S PP Q W+ ++G QS + I TV+++G Y+C+
Sbjct: 221 LNLSCHAASNPPA---QYSWF-----------VNGTFQQSTQELFIPNITVNNSGSYTCQ 266
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
WYK + T +A L+ R+ Q ++ I+ V+D+G+Y C + + +S T
Sbjct: 249 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 308
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
A + P T TV G C G+P TV W + +
Sbjct: 309 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 348
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
G + SVL+I+ D+G Y C N
Sbjct: 349 KAIGHSESVLRIESVKKEDKGMYQCFVRN 377
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
WYK + T +A L+ R+ Q ++ I+ V+D+G+Y C + + +S T
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
A + P T TV G C G+P TV W + +
Sbjct: 342 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 381
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
G + SVL+I+ D+G Y C N + + EA +++ G+
Sbjct: 382 KAIGHSESVLRIESVKKEDKGMYQCFVRN----DRESAEASAELKLGGR 426
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 125 FTLKCNVTSPPPGDDY--QIVWYKGNKSITEATELS-GRLTQSKDSITIRKTTVDDAGQY 181
TL C+V PG D I W ++I+E ++ R+ + +TI AG +
Sbjct: 637 LTLHCSV----PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNF 692
Query: 182 SC--RLIDPKSTNTTPL-AQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
+C R + TTPL I++PT K +G ++EC G P P V
Sbjct: 693 TCHARNLAGHQQFTTPLNVYVPPRWILEPTDK-----AFAQGSDAKVECKADGFPKPQVT 747
Query: 239 WRIGNDTYFRSQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYCHGNN 287
W+ +K S++ E+GT L +D + G Y C N
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEGT----LHVDNIQKTNEGYYLCEAIN 794
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 220 GEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
G+ L L C V G P ++W + G I S +G SVL I+ +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG-ITTSRVGRRG---SVLTIEAVEASHA 689
Query: 279 GNYYCHGNNVATRNSQPNEAFVYV 302
GN+ CH N+A VYV
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYV 713
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
WYK + T +A L+ R+ Q ++ I+ V+D+G+Y C + + +S T
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
A + P T TV G C G+P TV W + +
Sbjct: 306 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 345
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
G + SVL+I+ D+G Y C N
Sbjct: 346 KAIGHSESVLRIESVKKEDKGMYQCFVRN 374
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
+P TL+CN+TS Y W K +T + R S I K +D+G+Y
Sbjct: 19 LPVTLQCNLTSSSHTLMYSY-WTKNGVELT-----ATRKNASNMEYRINKPRAEDSGEYH 72
Query: 183 C--RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
C + N T +A D+ ++ EG+ + C VG P P WR
Sbjct: 73 CVYHFVSAPKANATIEVKAAPDITGHKRSE-----NKNEGQDAMMYCKSVGYPHPEWMWR 127
Query: 241 IGNDTYFR----SQGR---IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ F S GR I + E N LQI E D G Y C+ N
Sbjct: 128 KKENGVFEEISNSSGRFFIINKENYTELNIVN--LQITE----DPGEYECNATN 175
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 141 QIVWYKGNKSITEATELSG---RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
++ W++ + I+ +T L G + + +TI T ++G+YS K+TN + A
Sbjct: 36 EVSWFRDGQVISTST-LPGVQISFSDGRAKLTIPAVTKANSGRYSL-----KATNGSGQA 89
Query: 198 QADFDVIMKPT------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
+ ++++K + ++++TV +G ++RL+ V G P P V+ ++R
Sbjct: 90 TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK-------FYRDGA 142
Query: 252 RIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
I+ S + ++G S+L I EA D G Y + N R + E V
Sbjct: 143 EIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 141 QIVWYKGNKSITEATELSG---RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
++ W++ + I+ +T L G + + +TI T ++G+YS K+TN + A
Sbjct: 36 EVSWFRDGQVISTST-LPGVQISFSDGRAKLTIPAVTKANSGRYSL-----KATNGSGQA 89
Query: 198 QADFDVIMKPT------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
+ ++++K + ++++TV +G ++RL+ V G P P V+ ++R
Sbjct: 90 TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK-------FYRDGA 142
Query: 252 RIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
I+ S + ++G S+L I EA D G Y + N R + E V
Sbjct: 143 EIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 34/189 (17%)
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQ----YSC----RL 185
PPP IVW K K ++ T+ + + I+I + AG+ Y C +
Sbjct: 34 PPP----SIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV 88
Query: 186 IDPKSTNTT------PLAQADFDVIMK-PTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
D S + T A F VI + P +++E G + + C +G+P P +
Sbjct: 89 GDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV-----GHTVLMTCKAIGNPTPNIY 143
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
W ++Q ++ +S +P + LQI+ + D+G Y C N++ T +S+
Sbjct: 144 W-------IKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATN 195
Query: 298 AFVYVRVKG 306
+V VR G
Sbjct: 196 LYVKVRRVG 204
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 202 DVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
++I KP + V G C G PPP++ WR +Q R + E P
Sbjct: 8 EIIRKPQNQGVRV-----GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP-- 60
Query: 262 GTANSVLQIDEATMA-DRGNYYCHGNN 287
S+L+I+ D Y C N
Sbjct: 61 -GGISILRIEPVRAGRDDAPYECVAEN 86
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL- 196
+D ++ W +I + + +T + + I + T +D G+Y L D K+ + +
Sbjct: 136 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195
Query: 197 --------AQADFDVIMKPT----------AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
A A+F + + L + +T+ EG+ L L C V G PPP V
Sbjct: 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
W + N+ S L + + I+ + AD G Y
Sbjct: 256 W-LKNEKALASDDHCNLKFEAGR---TAYFTINGVSTADSGKY 294
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T C V S P +I W + NK + + + + ++ +TI D G Y C
Sbjct: 26 TFMCAVESYP---QPEISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 186 IDPKSTNTTPLAQADFDVIMKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
+ + V MKP + + +IEG K L C +G+P P+V W I D
Sbjct: 82 NN--GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW-IKGD 138
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ R RI + E + L+I D G Y C N
Sbjct: 139 SALRENSRIAVLE-------SGSLRIHNVQKEDAGQYRCVAKN 174
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL- 196
+D ++ W +I + + +T + + I + T +D G+Y L D K+ + +
Sbjct: 31 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 90
Query: 197 --------AQADFDVIMKPT----------AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
A A+F + + L + +T+ EG+ L L C V G PPP V
Sbjct: 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150
Query: 239 W 239
W
Sbjct: 151 W 151
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQ----YSC----RL 185
PPP IVW K K ++ T+ + + I+I + AG+ Y C +
Sbjct: 36 PPP----SIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV 90
Query: 186 IDPKSTNTT------PLAQADFDVIMK-PTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
D S + T A F VI + P +++E G + + C +G+P P +
Sbjct: 91 GDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV-----GHTVLMTCKAIGNPTPNIY 145
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
W ++Q ++ +S +P + LQI+ + D+G Y C N++ T +S+
Sbjct: 146 W-------IKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATN 197
Query: 298 AFVYVR 303
+V VR
Sbjct: 198 LYVKVR 203
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 202 DVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
++I KP + V G C G PPP++ WR +Q R + E P
Sbjct: 10 EIIRKPQNQGVRV-----GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP-- 62
Query: 262 GTANSVLQIDEATMA-DRGNYYCHGNN 287
S+L+I+ D Y C N
Sbjct: 63 -GGISILRIEPVRAGRDDAPYECVAEN 88
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 46/210 (21%)
Query: 99 FIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS 158
+PR + IT N P+ K L C T P Q W+K NK I
Sbjct: 14 LVPRGSKITVN----PESKAVLAGQFVKLCCRATGHP---FVQYQWFKMNKEIPNG---- 62
Query: 159 GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT-- 216
+ + V DAG Y CR+ + + + +Q D I + + V+ ++
Sbjct: 63 -----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSES 117
Query: 217 ------------VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
++ G L L+C+ VGSP P +W F+ +E P
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW-------FK-------NELPLTHET 163
Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
+ + + +G Y+CH N R+SQ
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYN--DRDSQ 191
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
+ + V+ G + L+C+V+G PPP V W G S+ +LS P G + +L
Sbjct: 19 RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE---RLS-FPADGAEHGLL- 73
Query: 270 IDEATMADRGNYYCHGNN 287
+ A D G Y C N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 103 MNAITGNYDIEPKYKVFEYRVPFT------LKCNVTSPPPGDDYQIVWYKGNKSITEATE 156
M A +G+ P + F V LKC V PP +VW KG + + +
Sbjct: 4 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPP---PVVVWEKGGQQLAASER 60
Query: 157 LSGRLTQSKDSITIRKTTVDDAGQYSCR 184
LS ++ + + DAG Y CR
Sbjct: 61 LSFPADGAEHGLLLTAALPTDAGVYVCR 88
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 155 TELSGRLTQSKDSITIRKTTVDDAGQYSCR----LIDPKSTNTTPLAQADFDVIMKPTAK 210
T+ + + ++TI T D G Y+C L+ K++ + + F
Sbjct: 149 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 208
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
LVE GE++R+ +G PPP ++W N S IK A VL I
Sbjct: 209 LVEATV---GERVRIPAKYLGYPPPEIKW-YKNGIPLESNHTIK---------AGHVLTI 255
Query: 271 DEATMADRGNY 281
E + D GNY
Sbjct: 256 MEVSERDTGNY 266
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
V+ G + L+C+V+G PPP V W G S+ +LS P G + +L + A
Sbjct: 26 VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE---RLS-FPADGAEHGLL-LTAALPT 80
Query: 277 DRGNYYCHGNN 287
D G Y C N
Sbjct: 81 DAGVYVCRARN 91
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
LKC V PP +VW KG + + + LS ++ + + DAG Y CR
Sbjct: 34 LKCVVLGEPP---PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
V+ G + L+C+V+G PPP V W G S+ +LS P G + +L + A
Sbjct: 25 VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE---RLS-FPADGAEHGLL-LTAALPT 79
Query: 277 DRGNYYCHGNN 287
D G Y C N
Sbjct: 80 DAGVYVCRARN 90
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
LKC V PP +VW KG + + + LS ++ + + DAG Y CR
Sbjct: 33 LKCVVLGEPPP---VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%)
Query: 144 WYKGNKSITE---------------ATELSGR-LTQSKDSITIRKTTVDDAGQYSCRLID 187
WYKGN + + SGR + S S+ + T+ D G Y+ + D
Sbjct: 33 WYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD 92
Query: 188 PKSTNTTPLAQADFDV---IMKPTAKLVETLTVIEGEKLRLECLV--VGSPPPTVEWRIG 242
T A F V + +P ++ T TV E + + L CL +G+ ++W
Sbjct: 93 ENYRRTQ--ATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCLSNDIGA---NIQW--- 143
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNVATRNS 293
F SQ ++L+E NS+L+ID D G Y C N V+ R S
Sbjct: 144 ---LFNSQS-LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 152 TEATELSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207
+++ +L+ R+T S+++ +R + +DAG+Y C + +P S + D+I P
Sbjct: 147 SQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS--NSIKLDIIFDP 202
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%)
Query: 144 WYKGNKSITE---------------ATELSGR-LTQSKDSITIRKTTVDDAGQYSCRLID 187
WYKGN + + SGR + S S+ + T+ D G Y+ + D
Sbjct: 33 WYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD 92
Query: 188 PKSTNTTPLAQADFDV---IMKPTAKLVETLTVIEGEKLRLECLV--VGSPPPTVEWRIG 242
T A F V + +P ++ T TV E + + L CL +G+ ++W
Sbjct: 93 ENYRRTQ--ATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCLSNDIGA---NIQW--- 143
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNVATRNS 293
F SQ ++L+E NS+L+ID D G Y C N V+ R S
Sbjct: 144 ---LFNSQS-LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 152 TEATELSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
+++ +L+ R+T S+++ +R + +DAG+Y C + +P S + D+I P+
Sbjct: 147 SQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS--NSIKLDIIFDPS 203
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSV--LQID 271
LTV EG+ R++C V G P P + W++ G S ++ + E N V L I+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE-------NGVHSLIIE 71
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310
T D G Y C N A +NS E V + G S G
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSSG 110
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 137 GDDYQIVWY--KGNKSITEATELSGRLTQSKDSI----TIRKTTVDDAGQYSCRLIDPKS 190
G+ I WY +G K I+ + R+ K+ + TI ++DAG Y C+ D K
Sbjct: 30 GEPESIDWYNPQGEKIIS-----TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK- 83
Query: 191 TNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
T A ++ K T + +V +GE + C V SP P V W N+
Sbjct: 84 -GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV--- 139
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
+S++ AN+ LQI +D G Y C G
Sbjct: 140 ---TTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
T GE++ C GSP P + W FR+ I+ +E +N+ L +
Sbjct: 205 TAERGEEMTFSCRASGSPEPAISW-------FRNGKLIEENEKYILKGSNTELTVRNIIN 257
Query: 276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+D G Y C N A + + +AF+ V V+
Sbjct: 258 SDGGPYVCRATNKAGEDEK--QAFLQVFVQ 285
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
L C+ GSP PT+ WR RIK E N VLQI A + D G Y C
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-------NGVLQIRYAKLGDTGRYTC 79
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 132 TSPPPGDDYQIVWY--KGNKSITEATELSGRLTQSKDSI----TIRKTTVDDAGQYSCRL 185
T G+ I WY +G K I+ + R+ K+ + TI ++DAG Y C+
Sbjct: 23 TCTAIGEPESIDWYNPQGEKIIS-----TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 77
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
D K T A ++ K T + +V +GE + C V SP P V W N+
Sbjct: 78 TDAK--GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 135
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
+S++ AN+ LQI +D G Y C G
Sbjct: 136 EV------TTISDNRFAMLANNNLQILNINKSDEGIYRCEG 170
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 155 TELSGRLTQSKDSITIRKTTVDDAGQYSCR----LIDPKSTNTTPLAQADFDVIMKPTAK 210
T+ + + ++TI T D G Y+C L+ K++ + + F
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
LVE GE++R+ +G PPP ++W N S IK A VL I
Sbjct: 339 LVEATV---GERVRIPAKYLGYPPPEIKW-YKNGIPLESNHTIK---------AGHVLTI 385
Query: 271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
E + D GNY N ++ Q + + V V
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL---VETLTVIEGEKLR 224
+ ++ ++ D G Y C D K+ + + V+ + + +E T GE +
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVR-QLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
+ C G+PPP + W N+T G I L + N L I D G Y C
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSG-IVLKD------GNRNLTIRRVRKEDEGLYTCQ 738
Query: 285 GNNV 288
+V
Sbjct: 739 ACSV 742
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 133 SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
+PPP QI+W+K N+++ E + + L ++TIR+ +D G Y+C+
Sbjct: 693 NPPP----QIMWFKDNETLVEDSGIV--LKDGNRNLTIRRVRKEDEGLYTCQ 738
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
I KP +K V+EG+ ++LEC + PPP + W+ N+ + RI L + T
Sbjct: 19 IYKPQSK-----KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD---NT 70
Query: 264 ANSVLQIDEATMADRGNYYCHGNNVA 289
L I + D G Y N A
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEA 96
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 32/159 (20%)
Query: 146 KGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205
+G+KS+ E+ G+ S S+ I+ + D+G+Y C ++ + Q + +
Sbjct: 45 EGDKSLDGRIEVKGQHGSS--SLHIKDVKLSDSGRYDC-----EAASRIGGHQKSMYLDI 97
Query: 206 KPTAKLVETLTVI---EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
+ K + T+ EG + + C V +PP ++ WR R KL P K
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWR-----------RDKLVL-PAKN 145
Query: 263 TAN---------SVLQIDEATMADRGNYYCHG-NNVATR 291
T N +L+I + D G Y C N++ TR
Sbjct: 146 TTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE-KGT-ANSVLQIDEA 273
T E ++ L C G P P + W+ D + ++G L E KG +S L I +
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 274 TMADRGNYYC 283
++D G Y C
Sbjct: 71 KLSDSGRYDC 80
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 219 EGEKLRLECLVVGSPPPTVEWR-IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
EGE + C VV S PPT+ W+ G D + R + +N+ LQI D
Sbjct: 15 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-------LSNNYLQIRGIKKTD 67
Query: 278 RGNYYCHGNNVA 289
G Y C G +A
Sbjct: 68 EGTYRCEGRILA 79
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 32/159 (20%)
Query: 146 KGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205
+G+KS+ E+ G+ S S+ I+ + D+G+Y C ++ + Q + +
Sbjct: 45 EGDKSLDGRIEVKGQHGSS--SLHIKDVKLSDSGRYDC-----EAASRIGGHQKSMYLDI 97
Query: 206 KPTAKLVETLTVI---EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
+ K + T+ EG + + C V +PP ++ WR R KL P K
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWR-----------RDKLVL-PAKN 145
Query: 263 TAN---------SVLQIDEATMADRGNYYCHG-NNVATR 291
T N +L+I + D G Y C N++ TR
Sbjct: 146 TTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE-KGT-ANSVLQIDEA 273
T E ++ L C G P P + W+ D + ++G L E KG +S L I +
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 274 TMADRGNYYC 283
++D G Y C
Sbjct: 71 KLSDSGRYDC 80
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 20/164 (12%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
L+C + P D I WYK + + ++ I + +D+G+Y C
Sbjct: 242 LECIASGVPTPD---IAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCL-- 293
Query: 187 DPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
++N + V +K ++ L + GE RL C G+P PTV+W +
Sbjct: 294 ---ASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + +P + A + + ++ R Y C+ +N
Sbjct: 351 EPLQSA------PPNPNREVAGDTIIFRDTQISSRAVYQCNTSN 388
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 34/210 (16%)
Query: 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV-- 175
V + P TL+CN PPPG ++++ S E R++Q + +
Sbjct: 127 VVQEGAPLTLQCN---PPPGLPSPVIFWMS--SSMEPITQDKRVSQGHNGDLYFSNVMLQ 181
Query: 176 DDAGQYSC-------RLIDPKSTNTTPLAQADFDVIMKPT----AKLVETLTVIEGEKLR 224
D YSC I K+ T + P+ + V+ G L
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
LEC+ G P P + W ++ G + S+ + N L+I + D G Y+C
Sbjct: 242 LECIASGVPTPDIAW-------YKKGGDLP-SDKAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 285 GNNV--ATRNSQPNEAFVYVRVKGKSFGYD 312
+N + R++ + VRVK + D
Sbjct: 294 ASNKMGSIRHT------ISVRVKAAPYWLD 317
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
V EG ++ C G PPP + W ++ +L+ P+ GT L++ A +
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GT----LEVRYAQVQ 451
Query: 277 DRGNYYCHGNNVATRNSQPNEAFVYVR 303
D G Y C N +S P A ++VR
Sbjct: 452 DNGTYLCIAANAGGNDSMP--AHLHVR 476
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRLIDPKSTN 192
PPP I+W K + A +GRLT D ++ +R V D G Y C + +
Sbjct: 413 PPPA----ILWLSPRKHLVSAKS-NGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND 467
Query: 193 TTP 195
+ P
Sbjct: 468 SMP 470
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANS 266
+ +++ VIEG+ L+C V G+P P + W + Y RS ++E
Sbjct: 15 SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE--------- 65
Query: 267 VLQIDEATMADRGNYYCHGNN 287
L I +A D G Y C N
Sbjct: 66 -LHIQDALPEDHGTYTCLAEN 85
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH-----PEKGTA 264
K + + V+EG R +C V G P P V W F+ +K S H E+G
Sbjct: 46 KTILDMDVVEGSAARFDCKVEGYPDPEVMW-------FKDDNPVKESRHFQIDYDEEG-- 96
Query: 265 NSVLQIDEATMADRGNYYCHGNN 287
N L I E D Y C N
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVN 119
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRL 185
C V P D +++W+K + + E+ + + S+TI + DD +Y+C+
Sbjct: 61 FDCKVEGYP---DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117
Query: 186 ID 187
++
Sbjct: 118 VN 119
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH-----PEKGTA 264
K + + V+EG R +C V G P P V W F+ +K S H E+G
Sbjct: 46 KTILDMEVVEGSAARFDCKVEGYPDPEVMW-------FKDDNPVKESRHFQIDYDEEG-- 96
Query: 265 NSVLQIDEATMADRGNYYCHGNN 287
N L I E D Y C N
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVN 119
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRL 185
C V P D +++W+K + + E+ + + S+TI + DD +Y+C+
Sbjct: 61 FDCKVEGYP---DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117
Query: 186 ID 187
++
Sbjct: 118 VN 119
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 27/108 (25%)
Query: 207 PTAKLVETLTVIE-GEKLRLECLVVGSPPPTVEWRIGNDTYFR---------SQGRIKLS 256
PT + L V+E G + C G+P P + W F+ S GRIK
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW-------FKDFLPVDPAASNGRIKQ- 161
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVR 303
+ LQI+ + +D+G Y C N A TR S P A +YVR
Sbjct: 162 ------LRSGALQIESSEESDQGKYECVATNSAGTRYSAP--ANLYVR 201
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEK 261
++ KP ++TV EGE R C G P PTV W R G ++ ++ +++
Sbjct: 17 ILTKP-----RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY--- 68
Query: 262 GTANSVLQIDEATMADRGNY 281
S +I +D GNY
Sbjct: 69 ---KSTFEISSVQASDEGNY 85
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEK 261
++ KP ++TV EGE R C G P PTV W R G ++ ++ +++
Sbjct: 11 ILTKP-----RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY--- 62
Query: 262 GTANSVLQIDEATMADRGNY 281
S +I +D GNY
Sbjct: 63 ---KSTFEISSVQASDEGNY 79
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
T GE++ C GSP P + W FR+ I+ +E +N+ L +
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISW-------FRNGKLIEENEKYILKGSNTELTVRNIIN 161
Query: 276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+D G Y C N A + + +AF+ V V+
Sbjct: 162 SDGGPYVCRATNKAGEDEK--QAFLQVFVQ 189
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 31/111 (27%)
Query: 205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---------SQGRIKL 255
M P K+VE + + C G+P P + W F+ S GRIK
Sbjct: 113 MGPQLKVVE-----KARTATMLCAAGGNPDPEISW-------FKDFLPVDPATSNGRIKQ 160
Query: 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
+ LQI+ + +D+G Y C N A TR S P A +YVRV+
Sbjct: 161 -------LRSGALQIESSEESDQGKYECVATNSAGTRYSAP--ANLYVRVR 202
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SIT 169
D+ P+ KV E T+ C P D +I W+K + AT +GR+ Q + ++
Sbjct: 112 DMGPQLKVVEKARTATMLCAAGGNP---DPEISWFKDFLPVDPATS-NGRIKQLRSGALQ 167
Query: 170 IRKTTVDDAGQYSC 183
I + D G+Y C
Sbjct: 168 IESSEESDQGKYEC 181
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL C ++ P + W KG++++ + S R S+ + IR V DAG+YSC
Sbjct: 27 TLWCELSKAAP-----VEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVDAGEYSC 79
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 133 SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
+PPP QI+W+K N+++ E + + L ++TIR+ +D G Y+C+
Sbjct: 37 NPPP----QIMWFKDNETLVEDSGIV--LKDGNRNLTIRRVRKEDEGLYTCQ 82
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+E T GE + + C G+PPP + W N+T G I L + N L I
Sbjct: 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG-IVLKD------GNRNLTIR 69
Query: 272 EATMADRGNYYCHGNNV 288
D G Y C +V
Sbjct: 70 RVRKEDEGLYTCQACSV 86
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC--- 183
L C + P D I WY+ K + ++ + ++T+ +D G Y+C
Sbjct: 27 LSCQIVGRPLPD---IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
+ T++ L QA P L E G LRL + +G P P + W G
Sbjct: 84 NEVGEVETSSKLLLQATPQ--FHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQ 141
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGND 244
K ++ +T GE +L C +VG P P ++W R G +
Sbjct: 12 KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKE 47
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 207 PTAKLVETLTVIEGEK-LRLECLVVGSPPPTVEWR---IGNDTYFRSQGRIKLSEHPEKG 262
PT + L V+E + + C G+P P + W + DT + GRIK G
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS-NNNGRIKQLRSESIG 167
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVR 303
LQI+++ +D+G Y C N A TR S P A +YVR
Sbjct: 168 ----ALQIEQSEESDQGKYECVATNSAGTRYSAP--ANLYVR 203
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 160 RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLT 216
R+T S IT T D G+Y+C + + N ++ V++ KPT + ++T
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS-IHLTVLVPPSKPTISVPSSVT 117
Query: 217 VIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGR-------IKLSEHPEKGTANSVL 268
+ G + L C GSPP W + + + + P+ G L
Sbjct: 118 I--GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGD----L 171
Query: 269 QIDEATMADRGNYYCHGNN 287
D T D G YYC N
Sbjct: 172 IFDPVTAFDSGEYYCQAQN 190
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYFRSQGRIKLSEHPEKGT-ANSVLQID 271
+ V E E ++L C G P VEW+ G+ T + + ++ T ++S +
Sbjct: 11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70
Query: 272 EATMADRGNYYC 283
T D G Y C
Sbjct: 71 SVTRKDNGEYTC 82
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQID 271
L V +R C G+P P++ W + N FR + G IKL L ++
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISW-LKNGREFRGEHRIGGIKLRHQ------QWSLVME 77
Query: 272 EATMADRGNYYC 283
+DRGNY C
Sbjct: 78 SVVPSDRGNYTC 89
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 21/162 (12%)
Query: 142 IVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSC----RLIDPKSTNTTP- 195
I W K + + G +L + S+ + D G Y+C + + T T
Sbjct: 47 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Query: 196 LAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW---------RIGND-T 245
L ++ I++ A L T + G + C V P ++W ++G D T
Sbjct: 107 LERSPHRPILQ--AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + + +SE E A+ L++ + D G Y C N
Sbjct: 165 PYVTVLKSWISESVE---ADVRLRLANVSERDGGEYLCRATN 203
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS---ITIRKTTVD 176
Y+ TL C VT P + WY+ K I A L R+ + K + I T D
Sbjct: 17 RYQSNATLVCKVTGHP---KPIVKWYRQGKEII-ADGLKYRIQEFKGGYHQLIIASVTDD 72
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGS 232
DA Y R + + + + A + +V K T + + + + GE + ++ G
Sbjct: 73 DATVYQVRATN-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 233 PPPTVEWRIGND 244
P P + W+ G D
Sbjct: 132 PDPVITWQKGQD 143
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQID 271
L V +R C G+P P++ W + N FR + G IKL L ++
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISW-LKNGREFRGEHRIGGIKLRHQ------QWSLVME 185
Query: 272 EATMADRGNYYC 283
+DRGNY C
Sbjct: 186 SVVPSDRGNYTC 197
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 142 IVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSC----RLIDPKSTNTTP- 195
I W K + + G +L + S+ + D G Y+C + + T T
Sbjct: 155 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Query: 196 LAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW---------RIGND-- 244
L ++ I++ A L T + G + C V P ++W ++G D
Sbjct: 215 LERSPHRPILQ--AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272
Query: 245 ---TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
T ++ G + E VL + T D G Y C N
Sbjct: 273 PYVTVLKTAGANTTDKELE------VLSLHNVTFEDAGEYTCLAGN 312
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS---ITIRKTTVD 176
Y+ TL C VT P + WY+ K I A L R+ + K + I T D
Sbjct: 15 RYQSNATLVCKVTGHP---KPIVKWYRQGKEII-ADGLKYRIQEFKGGYHQLIIASVTDD 70
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGS 232
DA Y R + + + + A + +V K T + + + + GE + ++ G
Sbjct: 71 DATVYQVRATN-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 129
Query: 233 PPPTVEWRIGND 244
P P + W+ G D
Sbjct: 130 PDPVITWQKGQD 141
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 112 IEPK-YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
+EP+ Y+V E + TLKC P +D W+ N+S+ ++ S I
Sbjct: 12 LEPQWYRVLE-KDSVTLKCQGAYSP--EDQSTQWFH-NESL---------ISSQASSYFI 58
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV 230
TVDD+G+Y C+ ST + P+ +V + E + + L C
Sbjct: 59 DAATVDDSGEYRCQ--TQLSTLSDPV---QLEVHIGWLLLQAPRWVFKEEDPIHLRCH-- 111
Query: 231 GSPPPTVEWR---IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-- 285
W+ + TY ++ K H NS I +AT+ D G+Y+C G
Sbjct: 112 -------SWKNTALHKVTYLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLV 158
Query: 286 --NNVATRNSQ 294
NV++ Q
Sbjct: 159 GSKNVSSETVQ 169
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 112 IEPK-YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
+EP+ Y+V E + TLKC P +D W+ N+S+ ++ S I
Sbjct: 10 LEPQWYRVLE-KDSVTLKCQGAYSP--EDQSTQWFH-NESL---------ISSQASSYFI 56
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV 230
TVDD+G+Y C+ ST + P+ +V + E + + L C
Sbjct: 57 DAATVDDSGEYRCQT--QLSTLSDPV---QLEVHIGWLLLQAPRWVFKEEDPIHLRCH-- 109
Query: 231 GSPPPTVEWR---IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-- 285
W+ + TY ++ K H NS I +AT+ D G+Y+C G
Sbjct: 110 -------SWKNTALHKVTYLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLV 156
Query: 286 --NNVATRNSQ 294
NV++ Q
Sbjct: 157 GSKNVSSETVQ 167
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
I WYK + +TE + R+ Q K+ + V+D+G Y C
Sbjct: 40 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 81
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
I WYK + +TE + R+ Q K+ + V+D+G Y C
Sbjct: 35 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 76
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
I WYK + +TE + R+ Q K+ + V+D+G Y C
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 158 SGRLTQ-SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT 216
+G L++ + S+ I +D+G+Y C+ + L ++++ +A++V
Sbjct: 42 NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVV---- 97
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
+EG+ L L C W + Y++ +K N + I AT+
Sbjct: 98 -MEGQPLFLRC------HGWRNWDVYKVIYYKDGEALKY------WYENHNISITNATVE 144
Query: 277 DRGNYYCHG 285
D G YYC G
Sbjct: 145 DSGTYYCTG 153
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
I WYK + +TE + R+ Q K+ + V+D+G Y C
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 39/180 (21%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+EP++ TL C T P D Q W+ I T+ S R
Sbjct: 9 LEPQWINVLQEDSVTLTCRGTHSPESDSIQ--WFHNGNLIPTHTQPSYRF---------- 56
Query: 172 KTTVDDAGQYSCR-----LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLE 226
K +D+G+Y+C+ L DP + T L+ ++ V+ P L EGE + L
Sbjct: 57 KANNNDSGEYTCQTGQTSLSDP--VHLTVLS--EWLVLQTPH------LEFQEGETIVLR 106
Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
C P + T+F++ K S ++ I +A + G+Y+C GN
Sbjct: 107 CHSWKDKP------LVKVTFFQNGKSKKFSR------SDPNFSIPQANHSHSGDYHCTGN 154
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPL----AQADFDVIMKPTAKLVETLTVIEGEK 222
S+ +R D G+Y CR+ +T P A+ V++ P L + EG+
Sbjct: 80 SVLLRNAVQADEGEYECRV------STFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQG 133
Query: 223 LRL--ECLVVGSPPPTVEW 239
L L C GSP P+V W
Sbjct: 134 LTLAASCTAEGSPAPSVTW 152
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 34.3 bits (77), Expect = 0.084, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L+C + S P + W KG++++ + S R +K + IR + D G+YSC
Sbjct: 28 LQCELNSAAP-----VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSC 79
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
EG L+C + + P VEWR G++T R R L + K LQI MAD
Sbjct: 22 EGATAVLQCELNSAAP--VEWRKGSET-LRDGDRYSLRQDGTK----CELQIRGLAMADT 74
Query: 279 GNYYC 283
G Y C
Sbjct: 75 GEYSC 79
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 158 SGRLTQ-SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT 216
+G L++ + S+ I +D+G+Y C+ + L ++++ +A++V
Sbjct: 42 NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVV---- 97
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
+EG+ L L C + W + Y++ +K N + I AT+
Sbjct: 98 -MEGQPLFLRCHGWRN------WDVYKVIYYKDGEALKY------WYENHNISITNATVE 144
Query: 277 DRGNYYCHG 285
D G YYC G
Sbjct: 145 DSGTYYCTG 153
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 158 SGRLTQ-SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT 216
+G L++ + S+ I +D+G+Y C+ + L ++++ +A++V
Sbjct: 42 NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVV---- 97
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
+EG+ L L C W + Y++ +K N + I AT+
Sbjct: 98 -MEGQPLFLRC------HGWRNWDVYKVIYYKDGEALKY------WYENHNISITNATVE 144
Query: 277 DRGNYYCHG 285
D G YYC G
Sbjct: 145 DSGTYYCTG 153
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 137 GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
GD ++V Y N IT + E R+T IT + T +D G Y+C ++ + N+
Sbjct: 43 GDTTRLVCY--NNKITASYE--DRVTFLPTGITFKSVTREDTGTYTC-MVSEEGGNSYGE 97
Query: 197 AQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEW-RIG-----NDTY 246
+ V++ KPT + + T+ G + L C GSPP W + G N
Sbjct: 98 VKVKLIVLVPPSKPTVNIPSSATI--GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS 155
Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
R+ +P G L D + +D G Y C N
Sbjct: 156 TRAFSNSSYVLNPTTGE----LVFDPLSASDTGEYSCEARN 192
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT--------------AN 265
G + L C VGSP P ++W +F QG + G A
Sbjct: 36 GGSVELHCEAVGSPVPEIQW------WFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAA 89
Query: 266 SVLQIDEATMADRGNYYCHGNNVATRN 292
S + ID D G Y C +N RN
Sbjct: 90 STISIDTLVEEDTGTYECRASNDPDRN 116
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L+C ++ P + W+KG++++ + S R ++ + IR +DAG+Y C
Sbjct: 39 LRCELSKMAP-----VEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC 90
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT--------------AN 265
G + L C VGSP P ++W +F QG + G A
Sbjct: 36 GGSVELHCEAVGSPVPEIQW------WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89
Query: 266 SVLQIDEATMADRGNYYCHGNNVATRN 292
S + ID D G Y C +N RN
Sbjct: 90 STISIDTLVEEDTGTYECRASNDPDRN 116
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ S R K +D+G+Y+C+
Sbjct: 26 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF----------KANNNDSGEYTCQ- 72
Query: 186 IDPKSTNTTPLAQ-ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T T L+ V+ + L EGE + L C P +
Sbjct: 73 -----TGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP------LVKV 121
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
T+F++ K S + I +A + G+Y+C GN
Sbjct: 122 TFFQNGKSQKFSH------LDPTFSIPQANHSHSGDYHCTGN 157
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ S R K +D+G+Y+C+
Sbjct: 23 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF----------KANNNDSGEYTCQ- 69
Query: 186 IDPKSTNTTPLAQ-ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T T L+ V+ + L EGE + L C P +
Sbjct: 70 -----TGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP------LVKV 118
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
T+F++ K S + I +A + G+Y+C GN
Sbjct: 119 TFFQNGKSQKFSH------LDPTFSIPQANHSHSGDYHCTGN 154
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
LTV +G+ ++L C V G P ++W + G Q I +SE G L +
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG----FLSLKSV 67
Query: 274 TMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
+D G Y+C + T SQP V++ V+G F
Sbjct: 68 ERSDAGRYWCQVEDGGETEISQP----VWLTVEGVPF 100
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151
+ +EPK PF L C PP + IVW++G I
Sbjct: 101 FTVEPKDLAVPPNAPFQLSCEAVGPP--EPVTIVWWRGTTKI 140
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS---ITIRKTTVDD 177
Y+ TL C VT P + WY+ K I A L R+ + K + I T DD
Sbjct: 18 YQSNATLVCKVTGHP---KPIVKWYRQGKEII-ADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGSP 233
A Y R + + + + A + +V K T + + + + GE + ++ G P
Sbjct: 74 ATVYQVRATN-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 234 PPTVEWRIGND 244
P + W+ G D
Sbjct: 133 DPVITWQKGQD 143
>pdb|3KAA|A Chain A, Structure Of Tim-3 In Complex With Phosphatidylserine
pdb|3KAA|B Chain B, Structure Of Tim-3 In Complex With Phosphatidylserine
Length = 118
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT---------------- 155
+E YKV + + L C+ T P G + W KG ++ T
Sbjct: 3 LEDGYKVEVGKNAY-LPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKS 61
Query: 156 ---ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
+L G L + S+ I+ T+DD G Y CR+ P N L
Sbjct: 62 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKL 105
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS- 167
N D+ P+ KV E T+ C + P D +I W+K + +T +GR+ Q +
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPVDPSTS-NGRIKQLRSGG 165
Query: 168 ITIRKTTVDDAGQYSC 183
+ I + D G+Y C
Sbjct: 166 LQIESSEETDQGKYEC 181
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 202 DVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEW-----RIGNDTYFRSQGRI 253
++ M P K+VE T T++ C G+P P + W + T S GRI
Sbjct: 110 NIDMGPQLKVVERTRTATML--------CAASGNPDPEITWFKDFLPVDPST---SNGRI 158
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGK 307
K + LQI+ + D+G Y C +N A R S P A +YVRV K
Sbjct: 159 KQ-------LRSGGLQIESSEETDQGKYECVASNSAGVRYSSP--ANLYVRVGTK 204
>pdb|2OYP|A Chain A, T Cell Immunoglobulin Mucin-3 Crystal Structure Revealed A
Galectin-9-Independent Binding Surface
Length = 109
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEAT-------------------ELSGRLTQSKDS 167
L C+ T P G + W KG ++ T +L G L + S
Sbjct: 14 LPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVS 73
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
+ I+ T+DD G Y CR+ P N L
Sbjct: 74 LIIKNVTLDDHGTYCCRIQFPGLMNDKKL 102
>pdb|3O4O|B Chain B, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 142 IVWY--KGNKSITEATEL---SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK--STNTT 194
++WY + ++ + E R+++ KD + R T ++D G Y+C L + S
Sbjct: 51 LIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF 110
Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-----GSPPPTVEWRIG 242
PL D KL IE R+ C V S PT+ W +G
Sbjct: 111 PLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMG 163
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 218 IEGEKLRLE-CL---VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
+E +LRLE C+ V G+PPPT+ W + N R I + + E + L ++
Sbjct: 14 LEEPELRLEHCIEFVVRGNPPPTLHW-LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 72
Query: 274 TMADRGNYYCHGNN-VATRNSQPNEAFV 300
T + GNY N + T N N F+
Sbjct: 73 THYNNGNYTLIAKNPLGTANQTINGHFL 100
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 40/141 (28%)
Query: 139 DYQIVWYKGNKSITEATE--LSGRLTQSKDSITIRKTTVDDAGQYSCRL----------- 185
D +I WYK + + + E LS R T + + ++DAG Y C L
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGTTH---LLVHDVALEDAGYYRCVLTFAHEGQQYNI 210
Query: 186 -------IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV---VGSPPP 235
I K T P VI+ P ++T++ G +L + C V G+P
Sbjct: 211 TRSIELRIKKKKEETIP-------VIISP----LKTISASLGSRLTIPCKVFLGTGTPLT 259
Query: 236 TVEWRIGNDTYFRSQ---GRI 253
T+ W NDT+ S GR+
Sbjct: 260 TMLWWTANDTHIESAYPGGRV 280
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
++ +T+ V+ G KLRL+ + G P PTV W+
Sbjct: 22 GRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQ 53
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 37/117 (31%)
Query: 202 DVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---------S 249
++ M P K+VE T T++ C G+P P + W F+ S
Sbjct: 110 NIDMGPQLKVVERTRTATML--------CAASGNPDPEITW-------FKDFLPVDPSAS 154
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
GRIK + LQI+ + D+G Y C N A R S P A +YVRV+
Sbjct: 155 NGRIKQ-------LRSGALQIESSEETDQGKYECVATNSAGVRYSSP--ANLYVRVR 202
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 37/117 (31%)
Query: 202 DVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---------S 249
++ M P K+VE T T++ C G+P P + W F+ S
Sbjct: 110 NIDMGPQLKVVERTRTATML--------CAASGNPDPEITW-------FKDFLPVDPSAS 154
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
GRIK + LQI+ + D+G Y C N A R S P A +YVRV+
Sbjct: 155 NGRIKQ-------LRSGALQIESSEETDQGKYECVATNSAGVRYSSP--ANLYVRVR 202
>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
Length = 349
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 142 IVWY--KGNKSITEATEL---SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK--STNTT 194
++WY + ++ + E R+++ KD + R T ++D G Y+C L + S
Sbjct: 50 LIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF 109
Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-----GSPPPTVEWRIG 242
PL D KL IE R+ C V S PT+ W +G
Sbjct: 110 PLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMG 162
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 39/180 (21%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+EP + TL C P D Q W+ I T+ S R
Sbjct: 6 LEPPWINVLQEDSVTLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF---------- 53
Query: 172 KTTVDDAGQYSCR-----LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLE 226
K +D+G+Y+C+ L DP + T L+ ++ V+ P L EGE + L
Sbjct: 54 KANNNDSGEYTCQTGQTSLSDP--VHLTVLS--EWLVLQTPH------LEFQEGETIMLR 103
Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
C P + T+F++ K S + I +A + G+Y+C GN
Sbjct: 104 CHSWKDKP------LVKVTFFQNGKSQKFSR------LDPTFSIPQANHSHSGDYHCTGN 151
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 158 SGRLTQ-SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT 216
+G L++ + S+ I +D+G+Y C+ + L ++++ +A++V
Sbjct: 42 NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVV---- 97
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
+EG+ L L C + W + Y++ +K N + I A
Sbjct: 98 -MEGQPLFLRCHGWRN------WDVYKVIYYKDGEALKY------WYENHAISITNAAAE 144
Query: 277 DRGNYYCHG 285
D G YYC G
Sbjct: 145 DSGTYYCTG 153
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL+C ++ P + W KG +S+ + S R + + I V DAG+YSC
Sbjct: 27 TLRCELSKAAP-----VEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEYSCVC 81
Query: 186 IDPKSTNT 193
+ +++ T
Sbjct: 82 GEERTSAT 89
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ S R K +D+G+Y+C+
Sbjct: 23 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF----------KANNNDSGEYTCQ- 69
Query: 186 IDPKSTNTTPLAQ-ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T T L+ V+ + L EGE + L C P +
Sbjct: 70 -----TGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDKP------LVKV 118
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
T+F++ K S + I +A + G+Y+C GN
Sbjct: 119 TFFQNGKSQKFSR------LDPTFSIPQANHSHSGDYHCTGN 154
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK 222
++ S+ I +D+G+Y C+ + L ++++ +A++V +EG+
Sbjct: 51 ETNSSLNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVV-----MEGQP 105
Query: 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
L L C + W + Y++ +K N + I A D G YY
Sbjct: 106 LFLRCHGWRN------WDVYKVIYYKDGEALKY------WYENHAISITNAAAEDSGTYY 153
Query: 283 CHG 285
C G
Sbjct: 154 CTG 156
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ S R K +D+G+Y+C+
Sbjct: 23 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF----------KANNNDSGEYTCQ- 69
Query: 186 IDPKSTNTTPLAQ-ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T T L+ V+ + L EGE + L C P +
Sbjct: 70 -----TGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDKP------LVKV 118
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
T+F++ K S + I +A + G+Y+C GN
Sbjct: 119 TFFQNGKSQKFSR------LDPTFSIPQANHSHSGDYHCTGN 154
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
D+ WYK + + E+ L ++ K + + + V D+G++ CR
Sbjct: 38 DFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR 83
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ S R K +D+G+Y+C+
Sbjct: 23 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQPSYRF----------KANNNDSGEYTCQ- 69
Query: 186 IDPKSTNTTPLAQ-ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T T L+ V+ + L EGE + L C P +
Sbjct: 70 -----TGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDKP------LVKV 118
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
T+F++ K S + I +A + G+Y+C GN
Sbjct: 119 TFFQNGKSQKFSR------LDPTFSIPQANHSHSGDYHCTGN 154
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
++T EG L+C + P VEW+ G +T R GR L + GT LQI
Sbjct: 15 LKTKEASEGATATLQCELSKVAP--VEWKKGPET-LRDGGRYSLKQD---GT-RCELQIH 67
Query: 272 EATMADRGNYYC 283
+ ++AD G Y C
Sbjct: 68 DLSVADAGEYSC 79
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL+C ++ P + W KG +++ + S + ++ + I +V DAG+YSC
Sbjct: 27 TLQCELSKVAP-----VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC 81
Query: 186 IDPKSTNT 193
+++ T
Sbjct: 82 GQERTSAT 89
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
+ + ++PT++ ++ G L L+C+ VGSP P +W F+ +E
Sbjct: 2 SKLQICVEPTSQ-----KLMPGSTLVLQCVAVGSPIPHYQW-------FK-------NEL 42
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
P + + + +G Y+CH N R+SQ
Sbjct: 43 PLTHETKKLYMVPYVDLEHQGTYWCHVYN--DRDSQ 76
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ-SKDSITIRK 172
P VF+ TL C V P Q W+ L+G TQ S S I
Sbjct: 9 PWVSVFQEET-VTLHCEVLHLPGSSSTQ--WF-----------LNGTATQTSTPSYRITS 54
Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS 232
+V+D+G+Y C+ ++ L ++++ ++++ EGE L L C
Sbjct: 55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV-----FTEGEPLALRCHA--- 106
Query: 233 PPPTVEWR---IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
W+ + N Y+R+ K NS L I + ++ G Y+C G
Sbjct: 107 ------WKDKLVYNVLYYRNGKAFKFFH------WNSNLTILKTNISHNGTYHCSG 150
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
F + +SPP + W+K ++ + ++ + R + +TI + DD G+Y+ R
Sbjct: 396 FYCRVIASSPP-----VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 450
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
F + +SPP + W+K ++ + ++ + R + +TI + DD G+Y+ R
Sbjct: 502 FYCRVIASSPP-----VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIK------LSEHPEKGTANSVLQ 269
V +GE + L C+V+G+ EW TY R + GR+ L + P S+L
Sbjct: 193 VRQGENITLMCIVIGNEVVNFEW-----TYPRKESGRLVEPVTDFLLDMPYH--IRSILH 245
Query: 270 IDEATMADRGNYYCH 284
I A + D G Y C+
Sbjct: 246 IPSAELEDSGTYTCN 260
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRI-----KLSEHP-------EKGTANSVLQIDEATM 275
LVV P P + + + G ++S+ P + GT +SVL + T
Sbjct: 1 LVVTPPGPELVLNVSSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 276 ADRGNYYCHGNNVATRNSQPNE-AFVYVRVKGKSFGY 311
D G Y+C N+ +R + +E +Y+ V + G+
Sbjct: 61 LDTGEYFCTHND--SRGLETDERKRLYIFVPDPTVGF 95
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E +++ EG R++ V G P P V W + N +S K+ EKG + + ++
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVS-EKGLHSLIFEVVR 70
Query: 273 ATMADRGNYYCHGNNVA 289
A+ D G Y C N A
Sbjct: 71 AS--DAGAYACVAKNRA 85
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 151 ITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-- 208
IT SG+ + + T +D G Y+C + + V+ P
Sbjct: 261 ITRHNRTSGK------RLLFKTTLPEDEGVYTCEVDN--GVGKPQKHSLKLTVVSAPKYE 312
Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
K + + V +G+ + + C V G P P V W ++ S GR +++ S L
Sbjct: 313 QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW--SHNAKPLSGGRATVTD--------SGL 362
Query: 269 QIDEATMADRGNYYCHGNN 287
I D+G Y C N
Sbjct: 363 VIKGVKNGDKGYYGCRATN 381
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 154 ATELSGRLT---QSKD---SITIRKTTVDDAGQYSCRL-IDPKSTNTTPLAQADFDVIMK 206
A GR+ Q KD S+ I +DAG+Y C D + +P+ QA + + +
Sbjct: 272 APAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPI-QA-WQLFVN 329
Query: 207 PTAKLVETLTVIEG-----------------EKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
+ + + TV++G + ++ CL G+ + ++ + ++
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389
Query: 250 Q--GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
Q GR+ L E P GT +L ++ T D G Y+C N
Sbjct: 390 QYEGRLSLLEEPGNGTFTVIL--NQLTSRDAGFYWCLTN 426
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV 212
S+ I + + DAGQY C+ D ++N AD V +KP +LV
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKK---NADLQV-LKPEPELV 227
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
+V EG+ + + V G P P V W + N R R + +E E G L+I A
Sbjct: 16 SVREGQDVIMSIRVQGEPKPVVSW-LRNRQPVRPDQR-RFAEEAEGGLCR--LRILAAER 71
Query: 276 ADRGNYYCHGNN 287
D G Y C N
Sbjct: 72 GDAGFYTCKAVN 83
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
++G L L+C G P P + W F GR + E+GT LQI ++
Sbjct: 21 AVDGTAL-LKCKATGDPLPVISWL---KEGFTFPGRDPRATIQEQGT----LQIKNLRIS 72
Query: 277 DRGNYYCHGNNVATRNS 293
D G Y C VAT +S
Sbjct: 73 DTGTYTC----VATSSS 85
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 196 LAQADFD--VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
L Q DF ++ P+ L V +GE L C G P PT+EW G +
Sbjct: 3 LRQEDFPPRIVEHPS-----DLIVSKGEPATLNCKAEGRPTPTIEWYKGGE 48
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 210 KLVETLTVIEGEK-LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
K+ + L + K ++ +C G+P PT+ W + N F+ RI + + S++
Sbjct: 21 KMEKKLHAVPAAKTVKFKCPSSGTPQPTLRW-LKNGKEFKPDHRI--GGYKVRYATWSII 77
Query: 269 QIDEATMADRGNYYC 283
+D +D+GNY C
Sbjct: 78 -MDSVVPSDKGNYTC 91
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 144 WYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
W K K+I ++ + + + IR ++ DAG+Y+C + KST
Sbjct: 41 WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST 88
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 210 KLVETLTVIEGEK-LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
K+ + L + K ++ +C G+P PT+ W + N F+ RI + + S++
Sbjct: 20 KMEKKLHAVPAAKTVKFKCPSSGTPQPTLRW-LKNGKEFKPDHRI--GGYKVRYATWSII 76
Query: 269 QIDEATMADRGNYYC 283
+D +D+GNY C
Sbjct: 77 -MDSVVPSDKGNYTC 90
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+D Q Y+G SI L +T K ++ I T D+G+Y C D
Sbjct: 60 EDRQSAPYRGRTSI-----LRDGITAGKAALRIHNVTASDSGKYLCYFQD---------- 104
Query: 198 QADF---DVIMKPTAKLVETLTV-IEGEK---LRLECLVVG-SPPPTVEW 239
DF ++ A L L V ++G K + LEC G P P ++W
Sbjct: 105 -GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQW 153
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+D Q Y+G SI L +T K ++ I T D+G+Y C D
Sbjct: 60 EDRQSAPYRGRTSI-----LRDGITAGKAALRIHNVTASDSGKYLCYFQD---------- 104
Query: 198 QADF---DVIMKPTAKLVETLTV-IEGEK---LRLECLVVG-SPPPTVEW 239
DF ++ A L L V ++G K + LEC G P P ++W
Sbjct: 105 -GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQW 153
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L+C ++ P + W KG++++ S R ++ + I +V D G+YSC
Sbjct: 28 LQCELSKAAP-----VEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSC 79
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL C V ++ WYK K ++ ++++ + +++ +AG+YSC
Sbjct: 30 TLSCEVAQA----QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSC 83
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 196 LAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
L Q DF ++VE L V +GE L C G P PT+EW G +
Sbjct: 3 LRQEDF------PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGE 48
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 20/184 (10%)
Query: 144 WYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDP-KSTNTTPLAQADF 201
W K K + + G ++ S+ + D G Y+C + + S N T
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT----YHL 108
Query: 202 DVIMKP------TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQG- 251
DV+ + A L + + G + C V P ++W N + + G
Sbjct: 109 DVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 252 -RIKLSEHPEKGTANS-VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
+K+ +H ++N+ VL + T AD G Y C +N + +Q A++ V K ++
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ--SAWLTVLPKQQAP 226
Query: 310 GYDR 313
G ++
Sbjct: 227 GREK 230
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 167 SITIRKTTVDDAGQYSC-RLIDPKSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGE 221
++T R T + G Y C L DP + +TT + +K A L + +TV+EG+
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTT------IHLYVKDPAHSWNLLAQEVTVVEGQ 105
Query: 222 KLRLECLV 229
+ L CL+
Sbjct: 106 EAVLPCLI 113
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 210 KLVETLTVIEGEK-LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
K+ + L + K ++ +C G+P PT+ W + N F+ RI + + S++
Sbjct: 20 KMEKKLHAVPAAKTVKFKCPSSGTPNPTLRW-LKNGKEFKPDHRI--GGYKVRYATWSII 76
Query: 269 QIDEATMADRGNYYC 283
+D +D+GNY C
Sbjct: 77 -MDSVVPSDKGNYTC 90
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 167 SITIRKTTVDDAGQYSC-RLIDPKSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGE 221
++T R T + G Y C L DP + +TT + +K A L + +TV+EG+
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTT------IHLYVKDPAHSWNLLAQEVTVVEGQ 105
Query: 222 KLRLECLV 229
+ L CL+
Sbjct: 106 EAVLPCLI 113
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 136 PGDDYQIVWYKGNKSITEATE-LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT 194
PG +++ Y+ NK + ++ SG + + S+TI +D Y C D ST+
Sbjct: 42 PGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVV 101
Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLR-----LECLVVGSPPP--TVEWR 240
V+ +P A TL E+L+ L CL+ P TV W+
Sbjct: 102 FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK 154
>pdb|2OR8|A Chain A, Tim-1
pdb|2OR8|B Chain B, Tim-1
Length = 116
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 142 IVWYKGNKSITEATE---LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198
++W G++ + + L G +++ S+TI + D+G Y CR+ P N +
Sbjct: 46 LIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFND---QK 102
Query: 199 ADFDVIMKP 207
F + +KP
Sbjct: 103 VTFSLQVKP 111
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN-DTYFRSQGRIKL 255
L +++ EG+ L + C G P P V W G + + QGR +
Sbjct: 13 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI 58
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN-DTYFRSQGRIKL 255
L +++ EG+ L + C G P P V W G + + QGR +
Sbjct: 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI 56
>pdb|3CHN|J Chain J, Solution Structure Of Human Secretory Iga1
pdb|3CM9|J Chain J, Solution Structure Of Human Siga2
Length = 106
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ--GRIKLSEHPEKGTANSVLQIDEATMA 276
E + ++ CL G+ + ++ + ++Q GR+ L E P GT +L ++ T
Sbjct: 25 ESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVIL--NQLTSR 82
Query: 277 DRGNYYCHGN 286
D G Y+C N
Sbjct: 83 DAGFYWCLTN 92
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 24/110 (21%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+D Q Y+G SI L +T K ++ I T D+G+Y C D
Sbjct: 60 EDRQSAPYRGRTSI-----LRDGITAGKAALRIHNVTASDSGKYLCYFQD---------- 104
Query: 198 QADF---DVIMKPTAKLVETLTV----IEGEKLRLECLVVG-SPPPTVEW 239
DF ++ A L L V E + LEC G P P ++W
Sbjct: 105 -GDFYEKALVELKVAALGSNLHVEVKGYEDGGIHLECRSTGWYPQPQIQW 153
>pdb|2OR7|A Chain A, Tim-2
pdb|2OR7|B Chain B, Tim-2
Length = 115
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 156 ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190
+L G +++ S+TI T V D G Y C + P +
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGA 98
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 20/184 (10%)
Query: 144 WYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDP-KSTNTTPLAQADF 201
W K K + + G ++ S+ + D G Y+C + + S N T
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT----YHL 108
Query: 202 DVIMKP------TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQG- 251
DV+ + A L + + G + C V P ++W N + + G
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 252 -RIKLSEHPEKGTANS-VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
+K+ +H ++N+ VL + T AD G Y C +N + +Q A++ V K ++
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ--SAWLTVLPKQQAP 226
Query: 310 GYDR 313
G ++
Sbjct: 227 GREK 230
>pdb|4FQ1|H Chain H, Crystal Structure Of Pgt121 Fab
pdb|4FQC|H Chain H, Crystal Structure Of Pgt121 Fab Bound To A Complex-Type
Sialylated N- Glycan
Length = 244
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 221 EKLRLECLVVG-------------SPPPTVEW-----RIGNDTYFRS-QGRIKLSEHPEK 261
E L L C V G SP +EW + G+ Y S + R+ LS K
Sbjct: 16 ETLSLTCSVSGASISDSYWSWIRRSPGKGLEWIGYVHKSGDTNYSPSLKSRVNLSLDTSK 75
Query: 262 GTANSVLQIDEATMADRGNYYC----HGNNV 288
+ L + AT AD G YYC HG +
Sbjct: 76 NQVS--LSLVAATAADSGKYYCARTLHGRRI 104
>pdb|2D3V|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor A5
(Lilra5LIR9ILT11)
Length = 196
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 163 QSKDSITIRKTTVDDAGQYSCRLIDPK--STNTTPLAQADFDVIMKPTAKLVETLTVIEG 220
++K +I T AG+Y C P S + PL KPT + + V G
Sbjct: 55 KNKARFSIPSXTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG 114
Query: 221 EKLRLEC 227
E + L+C
Sbjct: 115 ENVTLQC 121
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 144 WYKGNKSITEATELSGRLTQSKDSITIRKTTV-DDAGQYSCRLIDP-KSTNTTPLAQADF 201
W K K + + G +++ I ++ V D G Y+C + + S N T
Sbjct: 52 WLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHT----YHL 107
Query: 202 DVIMKP------TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQG- 251
DV+ + A L + + G + C V P ++W N + + G
Sbjct: 108 DVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 167
Query: 252 -RIKLSEHPEKGTANS-VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
+K+ +H ++N+ VL + T AD G Y C +N + +Q A++ V K ++
Sbjct: 168 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ--SAWLTVLPKQQAP 225
Query: 310 GYDR 313
G ++
Sbjct: 226 GREK 229
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKS---------------ITEATELSGRLTQSKDSITI 170
TL+C +TS P I+W++G + +T +EL+ R SI+I
Sbjct: 27 TLRCAMTSLIPVGP--IMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKR-NNLDFSISI 83
Query: 171 RKTTVDDAGQYSC---RLIDPKSTNTTPLAQADFDVIMKPTAKLV 212
T DAG Y C R P A + V KP+A +V
Sbjct: 84 SNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVV 128
>pdb|1G6V|K Chain K, Complex Of The Camelid Heavy-Chain Antibody Fragment Cab-
Ca05 With Bovine Carbonic Anhydrase
Length = 126
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 210 KLVETL--TVIEGEKLRLECLVVGSPPPT--VEWR--------------IGNDTYFRS-- 249
+LVE+ +V G LRL C G T + W +G TY+
Sbjct: 3 QLVESGGGSVQAGGSLRLSCAASGYTVSTYCMGWFRQAPGKEREGVATILGGSTYYGDSV 62
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
+GR +S+ K T LQ++ D YYC G+ VA+
Sbjct: 63 KGRFTISQDNAKNTV--YLQMNSLKPEDTAIYYCAGSTVAS 101
>pdb|2JB5|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-1
pdb|2JB6|A Chain A, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
pdb|2JB6|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
Length = 216
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 21/137 (15%)
Query: 125 FTLKCNVTSPPPGDDYQIVWYK--------------GNKSITEATELSGRLTQSKDSITI 170
T+ C TS G + + WY+ N+ + SG + + S+TI
Sbjct: 18 ITISCTGTSSDVGSNNYVSWYQQHPGKAPKLMIYGGSNRPSGVSNRFSGSKSGNTASLTI 77
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLR-----L 225
+D Y CR D + + V+ +P A TL E+L+ L
Sbjct: 78 SGLQAEDEADYYCRSWDSNLSYSVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL 137
Query: 226 ECLVVGSPPP--TVEWR 240
CL+ P TV W+
Sbjct: 138 VCLISDFYPGAVTVAWK 154
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 141 QIVWYKGNKS-ITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
I WYK N+ I + T+ S QS ++ I ++D+G+Y C
Sbjct: 160 NITWYKNNQELIIDGTKYS----QSGQNLIIHNPELEDSGRYDC 199
>pdb|1F2X|K Chain K, Structure Of The Single-Domain Camelid Antibody Cab-Ca05
pdb|1F2X|L Chain L, Structure Of The Single-Domain Camelid Antibody Cab-Ca05
Length = 135
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 210 KLVETL--TVIEGEKLRLECLVVGSPPPT--VEWR--------------IGNDTYFRS-- 249
+LVE+ +V G LRL C G T + W +G TY+
Sbjct: 3 QLVESGGGSVQAGGSLRLSCAASGYTVSTYCMGWFRQAPGKEREGVATILGGSTYYGDSV 62
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
+GR +S+ K T LQ++ D YYC G+ VA+
Sbjct: 63 KGRFTISQDNAKNTV--YLQMNSLKPEDTAIYYCAGSTVAS 101
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
SQGR++L E+ A VL++ A D G Y C
Sbjct: 38 SQGRVQL----EQAGARQVLRVQGARSGDAGEYLC 68
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEW 239
L V + E L C V G P PT+EW
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEW 43
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEW 239
L V + E L C V G P PT+EW
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEW 43
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL+C ++S + W GN + + S R + + +R D+G+YSC
Sbjct: 27 TLRCVLSSVAA----PVKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDSGRYSCSF 82
Query: 186 IDPKSTNT 193
D ++ T
Sbjct: 83 GDQTTSAT 90
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+D Q Y+G SI L +T K ++ I T D+G+Y C D + A
Sbjct: 60 EDRQSAPYRGRTSI-----LRDGITAGKAALRIHNVTASDSGKYLCYFQD---GDFYEKA 111
Query: 198 QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-SPPPTVEW 239
+ V + +E +G + LEC G P P ++W
Sbjct: 112 LVELKVAALGSDLHIEVKGYEDG-GIHLECRSTGWYPQPQIKW 153
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 219 EGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
EG ++ + C V P T+ W R G + IK+ P + S L++ + D
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP----SASYLEVTPDSEND 87
Query: 278 RGNYYCHGNNVATRNSQPNEAFVYVRV 304
GNY C N R Q + F+ V+
Sbjct: 88 FGNYNCTAVN---RIGQESLEFILVQA 111
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL+C ++S + W GN + + S R + + +R D+G+YSC
Sbjct: 27 TLRCVLSSVAA----PVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF 82
Query: 186 IDPKSTNT 193
D ++ T
Sbjct: 83 GDQTTSAT 90
>pdb|4FAB|H Chain H, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 216
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 217 VIEGEKLRLECLVVG-------------SPPPTVEW--RIGN-----DTYFRS--QGRIK 254
V G ++L C+ G SP +EW +I N +TY+ +GR
Sbjct: 12 VQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFT 71
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
+S K + LQ++ + D G YYC G+
Sbjct: 72 ISRDDSKSSV--YLQMNNLRVEDMGIYYCTGS 101
>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment
Length = 219
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 217 VIEGEKLRLECLVVG-------------SPPPTVEW--RIGN-----DTYFRS--QGRIK 254
V G ++L C+ G SP +EW +I N +TY+ +GR
Sbjct: 12 VQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFT 71
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
+S K + LQ++ + D G YYC G+
Sbjct: 72 ISRDDSKSSV--YLQMNNLRVEDMGIYYCTGS 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,904,059
Number of Sequences: 62578
Number of extensions: 412258
Number of successful extensions: 1744
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 301
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)