Query psy15235
Match_columns 323
No_of_seqs 208 out of 1661
Neff 11.4
Searched_HMMs 46136
Date Sat Aug 17 00:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 5.4E-33 1.2E-37 246.9 26.8 265 21-314 241-523 (1051)
2 KOG3513|consensus 100.0 1.2E-30 2.6E-35 232.2 25.3 265 26-312 336-619 (1051)
3 PHA02785 IL-beta-binding prote 100.0 2.3E-28 5E-33 201.6 24.9 245 29-291 34-317 (326)
4 KOG4221|consensus 100.0 5.7E-27 1.2E-31 208.5 24.7 256 32-311 50-332 (1381)
5 KOG4194|consensus 100.0 1.9E-27 4.1E-32 198.2 19.1 263 26-307 508-798 (873)
6 KOG4221|consensus 100.0 2.9E-27 6.4E-32 210.3 19.7 254 27-307 146-418 (1381)
7 KOG4222|consensus 99.9 5.9E-25 1.3E-29 194.7 15.4 273 22-315 32-323 (1281)
8 KOG4222|consensus 99.9 1.2E-23 2.7E-28 186.5 16.7 243 28-292 138-402 (1281)
9 PHA02826 IL-1 receptor-like pr 99.9 1E-20 2.3E-25 146.8 17.0 158 117-289 32-211 (227)
10 PHA02826 IL-1 receptor-like pr 99.9 7.8E-21 1.7E-25 147.5 15.8 155 28-186 29-208 (227)
11 KOG4194|consensus 99.8 4.8E-20 1E-24 154.4 14.7 188 113-313 509-712 (873)
12 PHA02785 IL-beta-binding prote 99.8 5.3E-18 1.2E-22 140.2 15.0 166 119-306 38-217 (326)
13 cd05735 Ig8_DSCAM Eight immuno 99.7 8.7E-17 1.9E-21 106.4 11.1 87 220-310 1-87 (88)
14 cd05762 Ig8_MLCK Eighth immuno 99.7 1.5E-16 3.3E-21 107.4 12.2 92 211-311 6-97 (98)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.2E-16 1.1E-20 102.2 11.6 83 214-304 4-86 (86)
16 cd04975 Ig4_SCFR_like Fourth i 99.7 5.4E-16 1.2E-20 104.8 11.1 88 214-305 12-100 (101)
17 cd05773 Ig8_hNephrin_like Eigh 99.7 5.1E-16 1.1E-20 107.1 10.9 86 219-308 22-108 (109)
18 cd05851 Ig3_Contactin-1 Third 99.7 7.4E-16 1.6E-20 102.1 10.5 82 211-305 7-88 (88)
19 cd05745 Ig3_Peroxidasin Third 99.7 4.3E-16 9.3E-21 99.9 8.8 74 219-304 1-74 (74)
20 cd05892 Ig_Myotilin_C C-termin 99.7 5.9E-16 1.3E-20 98.6 8.8 75 223-304 1-75 (75)
21 cd05730 Ig3_NCAM-1_like Third 99.7 1.2E-15 2.6E-20 103.1 10.5 83 214-306 12-94 (95)
22 cd05737 Ig_Myomesin_like_C C-t 99.6 3.2E-15 6.9E-20 100.2 11.2 86 211-304 7-92 (92)
23 cd05893 Ig_Palladin_C C-termin 99.6 1.1E-15 2.5E-20 97.5 8.1 75 223-304 1-75 (75)
24 cd05852 Ig5_Contactin-1 Fifth 99.6 1.5E-15 3.3E-20 96.4 8.6 73 220-304 1-73 (73)
25 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.2E-15 1.3E-19 100.0 11.4 91 206-304 2-98 (98)
26 cd05732 Ig5_NCAM-1_like Fifth 99.6 3.4E-15 7.3E-20 101.2 10.0 91 206-304 2-96 (96)
27 cd05760 Ig2_PTK7 Second immuno 99.6 2.8E-15 6.1E-20 96.7 9.1 76 223-306 1-76 (77)
28 cd05867 Ig4_L1-CAM_like Fourth 99.6 4.2E-15 9.1E-20 95.8 9.6 73 220-304 1-75 (76)
29 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.9E-15 6.2E-20 92.7 8.2 65 223-304 1-65 (67)
30 cd05859 Ig4_PDGFR-alpha Fourth 99.6 5.9E-15 1.3E-19 99.9 10.2 88 214-305 12-100 (101)
31 cd05865 Ig1_NCAM-1 First immun 99.6 6.1E-15 1.3E-19 98.8 10.2 86 212-304 7-95 (96)
32 cd05868 Ig4_NrCAM Fourth immun 99.6 5.7E-15 1.2E-19 94.9 9.1 74 220-304 1-75 (76)
33 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.3E-14 2.8E-19 98.3 11.2 91 206-304 2-97 (97)
34 cd05728 Ig4_Contactin-2-like F 99.6 7E-15 1.5E-19 96.9 9.4 81 211-304 5-85 (85)
35 cd05723 Ig4_Neogenin Fourth im 99.6 8.3E-15 1.8E-19 92.9 9.2 71 222-304 1-71 (71)
36 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.4E-14 3.1E-19 98.2 10.9 93 206-302 2-97 (98)
37 cd05744 Ig_Myotilin_C_like Imm 99.6 1.1E-14 2.5E-19 93.2 9.5 75 223-304 1-75 (75)
38 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2E-14 4.4E-19 95.9 11.0 84 212-304 7-90 (90)
39 cd05876 Ig3_L1-CAM Third immun 99.6 6.2E-15 1.3E-19 93.5 7.9 71 223-305 1-71 (71)
40 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.3E-14 2.9E-19 96.4 9.6 79 214-304 12-90 (91)
41 cd05891 Ig_M-protein_C C-termi 99.6 2.3E-14 5E-19 95.7 10.8 86 211-304 7-92 (92)
42 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.3E-14 2.9E-19 93.7 9.3 75 220-304 1-75 (76)
43 cd04968 Ig3_Contactin_like Thi 99.6 2.2E-14 4.8E-19 95.4 10.5 81 211-304 7-87 (88)
44 cd04969 Ig5_Contactin_like Fif 99.6 1.3E-14 2.8E-19 92.8 9.0 73 220-304 1-73 (73)
45 cd05726 Ig4_Robo Fhird immunog 99.6 1.8E-14 3.8E-19 96.2 9.7 80 220-310 1-87 (90)
46 PF07679 I-set: Immunoglobulin 99.6 4.5E-14 9.8E-19 94.5 11.8 85 211-304 6-90 (90)
47 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.7E-14 3.7E-19 92.1 9.1 73 225-302 3-76 (79)
48 cd05853 Ig6_Contactin-4 Sixth 99.6 1.3E-14 2.9E-19 94.0 8.7 81 221-308 1-85 (85)
49 cd05864 Ig2_VEGFR-2 Second imm 99.6 7.3E-15 1.6E-19 92.1 7.3 68 223-302 1-68 (70)
50 cd05748 Ig_Titin_like Immunogl 99.6 3E-14 6.5E-19 91.4 9.8 74 222-304 1-74 (74)
51 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.1E-14 2.4E-19 91.4 7.4 71 223-303 1-71 (72)
52 cd04976 Ig2_VEGFR Second immun 99.6 1.6E-14 3.4E-19 91.5 8.3 69 223-304 1-69 (71)
53 cd05854 Ig6_Contactin-2 Sixth 99.6 3.3E-14 7.2E-19 93.3 10.0 81 221-308 1-85 (85)
54 cd05724 Ig2_Robo Second immuno 99.6 3.7E-14 8.1E-19 94.0 10.2 72 213-291 4-76 (86)
55 cd05747 Ig5_Titin_like M5, fif 99.6 6.8E-14 1.5E-18 93.8 11.0 83 211-302 9-91 (92)
56 cd05764 Ig_2 Subgroup of the i 99.6 4.4E-14 9.5E-19 90.7 9.4 73 220-304 1-74 (74)
57 cd05857 Ig2_FGFR Second immuno 99.6 5.5E-14 1.2E-18 92.9 10.0 80 215-304 4-85 (85)
58 cd05866 Ig1_NCAM-2 First immun 99.6 7.3E-14 1.6E-18 92.7 10.3 84 212-304 7-91 (92)
59 cd04970 Ig6_Contactin_like Six 99.5 4.1E-14 9E-19 93.3 9.0 81 221-308 1-85 (85)
60 cd05731 Ig3_L1-CAM_like Third 99.5 2.6E-14 5.7E-19 91.0 7.7 70 223-304 1-70 (71)
61 cd05762 Ig8_MLCK Eighth immuno 99.5 1.1E-13 2.4E-18 93.4 10.5 88 110-207 3-94 (98)
62 cd05746 Ig4_Peroxidasin Fourth 99.5 3.6E-14 7.8E-19 89.5 7.5 68 223-302 1-68 (69)
63 cd05725 Ig3_Robo Third immunog 99.5 4E-14 8.7E-19 89.4 7.8 69 223-304 1-69 (69)
64 cd05856 Ig2_FGFRL1-like Second 99.5 5.5E-14 1.2E-18 92.4 8.7 78 216-304 5-82 (82)
65 cd04973 Ig1_FGFR First immunog 99.5 9E-14 2E-18 90.1 9.1 77 214-304 3-79 (79)
66 cd05898 Ig5_KIRREL3 Fifth immu 99.5 2.4E-13 5.1E-18 90.6 11.1 93 206-302 2-97 (98)
67 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 7.3E-14 1.6E-18 89.4 8.4 72 223-304 1-73 (74)
68 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.5E-13 3.2E-18 89.1 9.5 76 224-303 2-79 (81)
69 cd05743 Ig_Perlecan_D2_like Im 99.5 1E-13 2.2E-18 89.8 8.7 67 220-291 1-67 (78)
70 cd05771 IgC_Tapasin_R Tapasin- 99.5 4.4E-13 9.6E-18 97.2 13.0 120 167-289 2-131 (139)
71 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.9E-13 4.2E-18 85.8 9.4 68 220-302 1-68 (69)
72 cd05849 Ig1_Contactin-1 First 99.5 2E-13 4.3E-18 91.2 9.7 64 220-291 19-83 (93)
73 cd05763 Ig_1 Subgroup of the i 99.5 1.2E-13 2.6E-18 88.8 8.3 72 223-304 1-74 (75)
74 cd05851 Ig3_Contactin-1 Third 99.5 2.2E-13 4.7E-18 90.2 9.5 86 108-203 2-87 (88)
75 cd07693 Ig1_Robo First immunog 99.5 4.7E-13 1E-17 91.6 10.8 89 211-304 7-99 (100)
76 cd05850 Ig1_Contactin-2 First 99.5 5.7E-13 1.2E-17 89.4 10.8 64 220-291 19-84 (94)
77 cd04974 Ig3_FGFR Third immunog 99.5 2.2E-13 4.7E-18 90.7 8.6 81 220-304 1-89 (90)
78 cd05848 Ig1_Contactin-5 First 99.5 4.1E-13 8.9E-18 90.0 10.0 65 219-291 18-84 (94)
79 cd04977 Ig1_NCAM-1_like First 99.5 7.4E-13 1.6E-17 88.5 10.8 85 212-304 7-92 (92)
80 cd05756 Ig1_IL1R_like First im 99.5 2.3E-13 4.9E-18 90.9 8.1 79 214-304 8-94 (94)
81 cd05858 Ig3_FGFR-2 Third immun 99.5 5.9E-13 1.3E-17 88.8 9.8 81 220-304 1-89 (90)
82 cd05736 Ig2_Follistatin_like S 99.5 6.6E-13 1.4E-17 85.6 9.2 74 223-306 1-75 (76)
83 cd05722 Ig1_Neogenin First imm 99.5 7.4E-13 1.6E-17 89.3 9.8 83 212-304 6-95 (95)
84 cd05752 Ig1_FcgammaR_like Frst 99.5 4.2E-13 9.1E-18 86.2 8.1 62 212-289 7-69 (78)
85 cd05749 Ig2_Tyro3_like Second 99.4 7.8E-13 1.7E-17 85.5 8.5 67 212-291 5-72 (81)
86 cd05745 Ig3_Peroxidasin Third 99.4 5.4E-13 1.2E-17 85.4 7.6 64 121-192 1-65 (74)
87 cd05852 Ig5_Contactin-1 Fifth 99.4 6.4E-13 1.4E-17 84.3 7.6 63 122-192 1-64 (73)
88 cd05742 Ig1_VEGFR_like First i 99.4 8.9E-13 1.9E-17 86.7 8.4 79 220-304 1-83 (84)
89 cd05734 Ig7_DSCAM Seventh immu 99.4 8.2E-13 1.8E-17 85.8 8.1 72 223-304 1-79 (79)
90 cd05765 Ig_3 Subgroup of the i 99.4 8.7E-13 1.9E-17 86.3 8.3 74 220-304 1-81 (81)
91 cd05750 Ig_Pro_neuregulin Immu 99.4 8.1E-13 1.8E-17 85.1 7.7 65 223-291 1-68 (75)
92 cd04975 Ig4_SCFR_like Fourth i 99.4 2.2E-12 4.7E-17 87.2 10.0 79 116-203 12-99 (101)
93 cd05737 Ig_Myomesin_like_C C-t 99.4 2.2E-12 4.8E-17 86.3 9.6 69 114-190 8-81 (92)
94 cd05728 Ig4_Contactin-2-like F 99.4 1.8E-12 3.8E-17 85.4 8.7 71 113-191 5-75 (85)
95 PF07679 I-set: Immunoglobulin 99.4 3.4E-12 7.5E-17 85.4 10.3 73 109-189 2-78 (90)
96 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 4.8E-12 1E-16 82.9 10.6 82 220-305 1-83 (84)
97 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.4E-12 3.1E-17 84.0 7.5 63 223-291 1-68 (77)
98 cd04976 Ig2_VEGFR Second immun 99.4 1.2E-12 2.5E-17 82.9 6.5 60 125-192 1-60 (71)
99 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.6E-12 5.6E-17 82.6 8.1 63 223-291 1-68 (77)
100 cd05875 Ig6_hNeurofascin_like 99.4 3.2E-12 7E-17 82.2 8.5 63 223-291 1-68 (77)
101 cd05747 Ig5_Titin_like M5, fif 99.4 5.2E-12 1.1E-16 84.6 9.7 76 108-191 4-83 (92)
102 cd05752 Ig1_FcgammaR_like Frst 99.4 4.2E-12 9.2E-17 81.5 8.8 67 109-189 2-68 (78)
103 cd05743 Ig_Perlecan_D2_like Im 99.4 2.5E-12 5.3E-17 83.2 7.5 73 122-202 1-77 (78)
104 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.3E-12 2.7E-17 80.9 5.7 65 125-203 1-65 (67)
105 cd05873 Ig_Sema4D_like Immunog 99.4 3.6E-12 7.7E-17 83.0 8.1 69 212-289 3-71 (87)
106 cd04973 Ig1_FGFR First immunog 99.4 6.3E-12 1.4E-16 81.4 8.8 67 115-190 2-68 (79)
107 cd04968 Ig3_Contactin_like Thi 99.4 7.5E-12 1.6E-16 83.1 9.4 81 113-203 7-87 (88)
108 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 9.1E-12 2E-16 81.9 9.5 68 117-191 5-76 (86)
109 cd05864 Ig2_VEGFR-2 Second imm 99.4 2E-12 4.4E-17 81.1 6.1 68 125-201 1-68 (70)
110 cd05892 Ig_Myotilin_C C-termin 99.4 4.6E-12 1E-16 80.7 7.5 61 125-192 1-66 (75)
111 cd05867 Ig4_L1-CAM_like Fourth 99.4 7.4E-12 1.6E-16 80.6 8.6 75 122-203 1-75 (76)
112 cd05757 Ig2_IL1R_like Second i 99.3 5.9E-12 1.3E-16 83.5 8.1 81 215-304 5-90 (92)
113 cd04969 Ig5_Contactin_like Fif 99.3 6.5E-12 1.4E-16 80.2 7.9 63 122-192 1-64 (73)
114 cd04979 Ig_Semaphorin_C Immuno 99.3 1.2E-11 2.6E-16 82.3 9.2 81 214-306 5-88 (89)
115 cd05729 Ig2_FGFR_like Second i 99.3 2.6E-11 5.7E-16 80.1 10.6 81 216-304 5-85 (85)
116 cd05866 Ig1_NCAM-2 First immun 99.3 1.8E-11 3.9E-16 81.2 9.7 80 113-202 6-90 (92)
117 cd07702 Ig2_VEGFR-1 Second imm 99.3 4.6E-12 1E-16 79.5 6.5 67 125-198 1-67 (72)
118 cd05859 Ig4_PDGFR-alpha Fourth 99.3 1.4E-11 3E-16 83.4 9.3 78 116-203 12-99 (101)
119 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.3E-11 5E-16 81.1 10.1 72 113-192 6-81 (90)
120 cd05730 Ig3_NCAM-1_like Third 99.3 1.6E-11 3.5E-16 82.8 9.5 80 117-205 13-94 (95)
121 cd05723 Ig4_Neogenin Fourth im 99.3 9.9E-12 2.1E-16 78.7 7.9 60 124-191 1-61 (71)
122 cd05735 Ig8_DSCAM Eight immuno 99.3 2.3E-11 4.9E-16 80.5 9.9 77 122-207 1-85 (88)
123 cd05760 Ig2_PTK7 Second immuno 99.3 9.7E-12 2.1E-16 80.1 7.9 72 125-203 1-74 (77)
124 cd04967 Ig1_Contactin First Ig 99.3 2E-11 4.4E-16 81.5 9.3 65 219-291 18-84 (91)
125 cd05853 Ig6_Contactin-4 Sixth 99.3 1.7E-11 3.7E-16 79.6 8.6 80 123-207 1-85 (85)
126 cd05891 Ig_M-protein_C C-termi 99.3 2.6E-11 5.6E-16 81.0 9.3 69 114-190 8-81 (92)
127 cd05865 Ig1_NCAM-1 First immun 99.3 3.6E-11 7.9E-16 80.6 9.9 84 113-203 6-95 (96)
128 cd05854 Ig6_Contactin-2 Sixth 99.3 3.2E-11 6.9E-16 79.2 9.3 80 123-207 1-85 (85)
129 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.4E-11 3.1E-16 79.3 7.6 65 223-291 1-69 (76)
130 cd05869 Ig5_NCAM-1 Fifth immun 99.3 4.6E-11 1E-15 80.8 10.3 81 108-192 3-88 (97)
131 cd05882 Ig1_Necl-1 First (N-te 99.3 6.4E-11 1.4E-15 79.1 10.7 73 213-288 5-84 (95)
132 cd05748 Ig_Titin_like Immunogl 99.3 2.5E-11 5.4E-16 77.7 8.3 59 124-190 1-63 (74)
133 cd05857 Ig2_FGFR Second immuno 99.3 2.6E-11 5.6E-16 80.0 8.6 79 117-201 4-83 (85)
134 cd05746 Ig4_Peroxidasin Fourth 99.3 1.2E-11 2.5E-16 77.9 6.5 60 125-192 1-61 (69)
135 cd05868 Ig4_NrCAM Fourth immun 99.3 1.7E-11 3.7E-16 78.7 7.3 75 122-203 1-75 (76)
136 cd05754 Ig3_Perlecan_like Thir 99.3 2.8E-11 6E-16 79.8 8.2 76 212-302 8-84 (85)
137 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.7E-11 5.8E-16 78.1 7.9 75 122-203 1-75 (76)
138 cd05885 Ig2_Necl-4 Second immu 99.3 6.1E-11 1.3E-15 75.5 9.2 78 223-304 2-80 (80)
139 cd05727 Ig2_Contactin-2-like S 99.3 2E-11 4.2E-16 80.7 7.2 72 214-291 12-85 (96)
140 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 3.9E-11 8.5E-16 75.2 8.1 60 122-191 1-60 (69)
141 cd05756 Ig1_IL1R_like First im 99.3 3E-11 6.5E-16 80.7 7.9 71 116-190 8-83 (94)
142 cd05893 Ig_Palladin_C C-termin 99.3 2.6E-11 5.5E-16 77.4 7.1 61 125-192 1-66 (75)
143 cd04977 Ig1_NCAM-1_like First 99.3 9.1E-11 2E-15 78.3 10.0 81 112-202 5-91 (92)
144 cd05860 Ig4_SCFR Fourth immuno 99.3 1.2E-10 2.6E-15 77.0 10.2 88 214-305 12-100 (101)
145 cd04970 Ig6_Contactin_like Six 99.2 5.6E-11 1.2E-15 78.3 8.6 80 123-207 1-85 (85)
146 cd05744 Ig_Myotilin_C_like Imm 99.2 4.7E-11 1E-15 76.4 7.8 61 125-192 1-66 (75)
147 cd05876 Ig3_L1-CAM Third immun 99.2 3.5E-11 7.6E-16 76.2 7.1 70 125-203 1-70 (71)
148 KOG3515|consensus 99.2 1E-10 2.2E-15 103.3 12.0 271 30-311 106-404 (741)
149 cd05856 Ig2_FGFRL1-like Second 99.2 4.8E-11 1E-15 78.2 7.7 65 118-190 5-71 (82)
150 cd05855 Ig_TrkB_d5 Fifth domai 99.2 6.1E-11 1.3E-15 75.8 7.7 62 127-192 3-69 (79)
151 PF13895 Ig_2: Immunoglobulin 99.2 1.4E-10 3.1E-15 75.6 9.8 79 207-304 2-80 (80)
152 cd05753 Ig2_FcgammaR_like Seco 99.2 6E-11 1.3E-15 77.4 7.9 65 214-291 8-73 (83)
153 cd05726 Ig4_Robo Fhird immunog 99.2 8.1E-11 1.7E-15 78.4 8.6 78 122-205 1-83 (90)
154 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 6.3E-11 1.4E-15 75.7 7.7 72 125-203 1-73 (74)
155 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1.2E-10 2.5E-15 77.5 9.1 80 113-203 9-90 (91)
156 cd05725 Ig3_Robo Third immunog 99.2 5.2E-11 1.1E-15 75.0 6.8 58 125-191 1-59 (69)
157 cd05724 Ig2_Robo Second immuno 99.2 1.4E-10 3.1E-15 76.7 9.2 72 114-192 3-76 (86)
158 cd05850 Ig1_Contactin-2 First 99.2 1.6E-10 3.4E-15 77.5 9.3 77 109-191 3-83 (94)
159 cd05764 Ig_2 Subgroup of the i 99.2 1.2E-10 2.6E-15 74.6 8.4 62 122-191 1-64 (74)
160 cd05845 Ig2_L1-CAM_like Second 99.2 5.1E-11 1.1E-15 78.6 6.6 70 214-290 12-83 (95)
161 cd05848 Ig1_Contactin-5 First 99.2 1.6E-10 3.6E-15 77.4 9.2 65 121-191 18-83 (94)
162 cd05862 Ig1_VEGFR First immuno 99.2 1.3E-10 2.9E-15 76.3 8.5 81 220-305 1-85 (86)
163 cd07701 Ig1_Necl-3 First (N-te 99.2 2.8E-10 6.1E-15 76.3 10.1 75 212-289 4-85 (95)
164 cd05870 Ig5_NCAM-2 Fifth immun 99.2 4.3E-10 9.2E-15 76.2 11.1 88 23-110 3-96 (98)
165 cd05897 Ig2_IL1R2_like Second 99.2 9.3E-11 2E-15 77.6 7.4 85 215-305 5-94 (95)
166 smart00408 IGc2 Immunoglobulin 99.2 1.7E-10 3.6E-15 71.3 8.1 63 219-290 1-63 (63)
167 cd05732 Ig5_NCAM-1_like Fifth 99.2 3.4E-10 7.5E-15 76.5 10.3 87 23-109 3-93 (96)
168 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 1.2E-10 2.7E-15 75.3 7.6 59 126-192 2-71 (81)
169 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.7E-10 5.8E-15 74.6 9.1 79 122-204 1-83 (84)
170 cd05873 Ig_Sema4D_like Immunog 99.2 3.3E-10 7.2E-15 73.8 9.2 67 113-186 2-68 (87)
171 cd05763 Ig_1 Subgroup of the i 99.2 1.7E-10 3.6E-15 74.1 7.6 72 125-203 1-74 (75)
172 cd07693 Ig1_Robo First immunog 99.2 4.9E-10 1.1E-14 76.5 10.3 81 108-192 2-89 (100)
173 cd05731 Ig3_L1-CAM_like Third 99.2 1.2E-10 2.6E-15 74.0 6.6 60 125-191 1-60 (71)
174 cd05757 Ig2_IL1R_like Second i 99.2 2.4E-10 5.3E-15 75.8 8.0 81 116-201 4-86 (92)
175 cd05849 Ig1_Contactin-1 First 99.2 3.2E-10 6.9E-15 75.7 8.5 76 110-192 4-83 (93)
176 cd04979 Ig_Semaphorin_C Immuno 99.1 3.8E-10 8.3E-15 75.0 8.8 85 114-204 3-87 (89)
177 cd05722 Ig1_Neogenin First imm 99.1 4.5E-10 9.9E-15 75.7 9.2 73 113-191 5-84 (95)
178 cd05773 Ig8_hNephrin_like Eigh 99.1 5.7E-10 1.2E-14 76.9 9.4 78 121-207 22-108 (109)
179 cd05759 Ig2_KIRREL3-like Secon 99.1 5.6E-10 1.2E-14 72.9 8.9 79 222-304 1-82 (82)
180 cd05736 Ig2_Follistatin_like S 99.1 5.4E-10 1.2E-14 71.9 8.4 71 125-203 1-73 (76)
181 cd05717 Ig1_Necl-1-3_like Firs 99.1 1.1E-09 2.5E-14 73.7 10.2 75 212-289 4-85 (95)
182 KOG3515|consensus 99.1 6.2E-10 1.4E-14 98.4 10.7 184 118-312 18-208 (741)
183 cd05858 Ig3_FGFR-2 Third immun 99.1 5.4E-10 1.2E-14 74.4 8.0 76 122-203 1-89 (90)
184 cd05749 Ig2_Tyro3_like Second 99.1 2.9E-10 6.3E-15 73.5 6.3 67 27-104 4-73 (81)
185 cd05871 Ig_Semaphorin_classIII 99.1 1.1E-09 2.4E-14 72.6 9.2 79 215-306 6-90 (91)
186 cd04974 Ig3_FGFR Third immunog 99.1 8.1E-10 1.8E-14 73.5 8.6 76 122-203 1-89 (90)
187 cd05765 Ig_3 Subgroup of the i 99.1 5.5E-10 1.2E-14 72.9 7.6 66 122-191 1-71 (81)
188 PF00047 ig: Immunoglobulin do 99.1 3.5E-10 7.6E-15 70.1 6.2 63 220-285 1-64 (64)
189 cd05753 Ig2_FcgammaR_like Seco 99.1 5.8E-10 1.3E-14 72.7 7.4 66 114-190 6-71 (83)
190 cd07690 Ig1_CD4 First immunogl 99.1 9.2E-10 2E-14 73.0 8.3 74 216-290 3-89 (94)
191 cd05895 Ig_Pro_neuregulin-1 Im 99.1 5.5E-10 1.2E-14 71.8 6.9 64 125-191 1-68 (76)
192 cd05742 Ig1_VEGFR_like First i 99.1 1E-09 2.2E-14 72.1 7.9 75 122-202 1-82 (84)
193 cd05758 Ig5_KIRREL3-like Fifth 99.1 3E-09 6.5E-14 72.1 10.4 73 114-192 8-90 (98)
194 cd05750 Ig_Pro_neuregulin Immu 99.1 5E-10 1.1E-14 71.9 6.1 64 125-192 1-68 (75)
195 cd07701 Ig1_Necl-3 First (N-te 99.1 2E-09 4.4E-14 72.1 9.1 69 115-186 5-82 (95)
196 cd05733 Ig6_L1-CAM_like Sixth 99.0 8.2E-10 1.8E-14 71.1 6.8 62 125-192 1-68 (77)
197 cd05751 Ig1_LILRB1_like First 99.0 1.3E-09 2.7E-14 72.7 7.6 89 206-304 2-90 (91)
198 cd04967 Ig1_Contactin First Ig 99.0 3.3E-09 7.2E-14 70.8 9.5 73 113-191 7-83 (91)
199 cd05882 Ig1_Necl-1 First (N-te 99.0 4.2E-09 9.1E-14 70.3 9.7 69 116-187 6-83 (95)
200 cd05771 IgC_Tapasin_R Tapasin- 99.0 1.4E-08 3E-13 73.6 13.3 105 82-189 3-130 (139)
201 cd05729 Ig2_FGFR_like Second i 99.0 3.5E-09 7.7E-14 69.8 9.2 65 117-189 4-73 (85)
202 cd05874 Ig6_NrCAM Sixth immuno 99.0 1.4E-09 3E-14 69.8 6.8 61 125-191 1-67 (77)
203 cd05885 Ig2_Necl-4 Second immu 99.0 6.2E-09 1.3E-13 66.3 9.6 75 124-201 1-78 (80)
204 smart00410 IG_like Immunoglobu 99.0 1.3E-08 2.7E-13 67.0 11.5 82 214-304 3-85 (86)
205 smart00409 IG Immunoglobulin. 99.0 1.3E-08 2.7E-13 67.0 11.5 82 214-304 3-85 (86)
206 PF13927 Ig_3: Immunoglobulin 99.0 1.5E-09 3.2E-14 69.7 6.7 74 206-287 1-75 (75)
207 PHA03376 BARF1; Provisional 99.0 6E-08 1.3E-12 70.5 15.3 116 30-148 20-162 (221)
208 cd05734 Ig7_DSCAM Seventh immu 99.0 2.1E-09 4.5E-14 69.7 7.3 64 125-192 1-69 (79)
209 cd05881 Ig1_Necl-2 First (N-te 99.0 1.1E-08 2.4E-13 67.9 10.5 74 213-289 5-85 (95)
210 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 4.3E-09 9.3E-14 69.9 8.5 78 215-304 10-104 (104)
211 cd05875 Ig6_hNeurofascin_like 99.0 2.5E-09 5.4E-14 68.7 6.9 61 125-191 1-67 (77)
212 PHA03376 BARF1; Provisional 99.0 2.3E-08 5E-13 72.6 11.9 125 117-244 21-163 (221)
213 cd05754 Ig3_Perlecan_like Thir 99.0 3.2E-09 6.9E-14 69.9 7.1 69 113-190 7-75 (85)
214 smart00408 IGc2 Immunoglobulin 98.9 6.8E-09 1.5E-13 63.9 7.8 61 121-189 1-61 (63)
215 cd05727 Ig2_Contactin-2-like S 98.9 7.4E-09 1.6E-13 68.5 7.8 71 115-189 11-82 (96)
216 cd05871 Ig_Semaphorin_classIII 98.9 2.1E-08 4.6E-13 66.5 9.5 68 117-189 6-75 (91)
217 PF13895 Ig_2: Immunoglobulin 98.9 2.2E-08 4.8E-13 65.0 9.2 59 117-189 9-67 (80)
218 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.5E-08 3.3E-13 67.3 8.2 72 117-189 10-92 (104)
219 cd05881 Ig1_Necl-2 First (N-te 98.9 2.7E-08 5.9E-13 66.0 9.4 69 116-187 6-83 (95)
220 cd05759 Ig2_KIRREL3-like Secon 98.9 3.3E-08 7.1E-13 64.5 9.5 76 124-202 1-81 (82)
221 PF00047 ig: Immunoglobulin do 98.9 6.1E-09 1.3E-13 64.5 5.8 57 122-185 1-64 (64)
222 cd05898 Ig5_KIRREL3 Fifth immu 98.9 4.8E-08 1E-12 65.2 10.1 75 113-192 7-90 (98)
223 cd05872 Ig_Sema4B_like Immunog 98.9 1.8E-08 3.9E-13 65.2 7.7 63 116-186 5-67 (85)
224 cd05897 Ig2_IL1R2_like Second 98.9 9.3E-09 2E-13 68.1 6.5 82 117-202 5-90 (95)
225 cd05717 Ig1_Necl-1-3_like Firs 98.9 3.1E-08 6.8E-13 66.7 9.3 68 116-186 6-82 (95)
226 cd05879 Ig_P0 Immunoglobulin ( 98.9 8E-08 1.7E-12 66.6 11.4 89 212-304 5-116 (116)
227 cd05883 Ig2_Necl-2 Second immu 98.8 9.7E-08 2.1E-12 61.1 9.2 78 223-305 2-80 (82)
228 cd05751 Ig1_LILRB1_like First 98.8 4.4E-08 9.6E-13 65.2 7.9 72 109-189 4-75 (91)
229 cd07690 Ig1_CD4 First immunogl 98.8 3.1E-08 6.6E-13 65.8 6.9 68 118-189 3-87 (94)
230 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.3E-07 2.9E-12 65.5 10.4 84 117-201 8-114 (116)
231 cd05877 Ig_LP_like Immunoglobu 98.8 1.3E-07 2.7E-12 65.2 10.0 81 219-306 1-104 (106)
232 cd05845 Ig2_L1-CAM_like Second 98.8 4.7E-08 1E-12 64.6 7.4 69 114-189 10-81 (95)
233 cd05872 Ig_Sema4B_like Immunog 98.8 8.1E-08 1.8E-12 62.2 8.1 64 214-287 5-68 (85)
234 cd05900 Ig_Aggrecan Immunoglob 98.7 2.2E-07 4.7E-12 64.0 10.6 83 219-306 1-110 (112)
235 smart00409 IG Immunoglobulin. 98.7 2.4E-07 5.2E-12 60.8 10.7 65 117-189 4-73 (86)
236 smart00410 IG_like Immunoglobu 98.7 2.4E-07 5.2E-12 60.8 10.7 65 117-189 4-73 (86)
237 cd05741 Ig_CEACAM_D1_like Firs 98.7 5.5E-08 1.2E-12 65.1 7.0 75 220-304 1-92 (92)
238 cd05883 Ig2_Necl-2 Second immu 98.7 2.5E-07 5.5E-12 59.2 9.6 78 124-205 1-81 (82)
239 cd05715 Ig_P0-like Immunoglobu 98.7 2.8E-07 6.1E-12 64.5 10.8 79 211-291 4-105 (116)
240 cd05714 Ig_CSPGs_LP Immunoglob 98.7 2.2E-07 4.8E-12 63.9 9.9 84 219-306 1-104 (106)
241 cd04983 IgV_TCR_alpha_like Imm 98.7 7.3E-08 1.6E-12 66.8 7.6 76 212-289 5-93 (109)
242 cd05878 Ig_Aggrecan_like Immun 98.7 3.2E-07 7E-12 63.3 10.1 83 219-306 1-108 (110)
243 cd05761 Ig2_Necl-1-4_like Seco 98.7 2.2E-07 4.8E-12 60.4 8.7 66 223-291 2-70 (82)
244 cd05711 Ig_FcalphaRI Immunoglo 98.7 1.7E-07 3.6E-12 62.7 7.9 76 206-287 1-76 (94)
245 cd05713 Ig_MOG_like Immunoglob 98.7 3.6E-07 7.8E-12 62.1 9.6 81 220-305 1-100 (100)
246 cd05862 Ig1_VEGFR First immuno 98.7 2.8E-07 6E-12 60.5 8.5 66 122-189 1-72 (86)
247 cd05741 Ig_CEACAM_D1_like Firs 98.6 1.2E-07 2.7E-12 63.4 7.0 64 122-189 1-79 (92)
248 cd05774 Ig_CEACAM_D1 First imm 98.6 1.6E-07 3.4E-12 63.8 7.2 73 113-189 4-92 (105)
249 cd05774 Ig_CEACAM_D1 First imm 98.6 2.7E-07 5.9E-12 62.6 7.7 80 215-304 8-105 (105)
250 cd05880 Ig_EVA1 Immunoglobulin 98.6 9.5E-07 2.1E-11 61.5 10.6 79 211-291 4-104 (115)
251 cd07705 Ig2_Necl-1 Second immu 98.6 6.9E-07 1.5E-11 58.1 9.1 67 223-291 2-71 (83)
252 cd05899 IgV_TCR_beta Immunoglo 98.6 4.1E-07 8.8E-12 63.0 8.3 74 212-289 5-95 (110)
253 cd00098 IgC Immunoglobulin Con 98.6 1.6E-07 3.4E-12 63.3 6.0 72 218-289 11-85 (95)
254 cd05713 Ig_MOG_like Immunoglob 98.6 5.7E-07 1.2E-11 61.1 8.6 67 122-189 1-87 (100)
255 cd07694 Ig2_CD4 Second immunog 98.6 1E-06 2.2E-11 56.3 8.5 66 213-289 7-74 (88)
256 cd05900 Ig_Aggrecan Immunoglob 98.5 1.4E-06 3E-11 60.0 9.8 80 121-203 1-108 (112)
257 cd05878 Ig_Aggrecan_like Immun 98.5 9.2E-07 2E-11 61.0 8.9 81 121-204 1-107 (110)
258 cd05718 Ig1_PVR_like First imm 98.5 1.1E-06 2.3E-11 59.5 9.2 77 221-304 1-97 (98)
259 cd05775 Ig_SLAM-CD84_like_N N- 98.5 5.1E-07 1.1E-11 60.8 7.3 78 218-304 2-96 (97)
260 cd00099 IgV Immunoglobulin var 98.5 4.3E-07 9.2E-12 62.4 6.9 73 216-290 2-91 (105)
261 cd05860 Ig4_SCFR Fourth immuno 98.5 2.2E-06 4.9E-11 56.9 9.8 80 116-203 12-99 (101)
262 cd05775 Ig_SLAM-CD84_like_N N- 98.5 3.9E-07 8.5E-12 61.4 6.4 65 121-189 3-83 (97)
263 cd05715 Ig_P0-like Immunoglobu 98.5 2.4E-06 5.3E-11 59.7 10.5 75 114-189 5-102 (116)
264 cd04980 IgV_L_kappa Immunoglob 98.5 7.9E-07 1.7E-11 61.1 7.7 73 212-288 7-93 (106)
265 cd05755 Ig2_ICAM-1_like Second 98.5 1.3E-06 2.7E-11 58.4 8.1 76 113-189 7-84 (100)
266 cd05880 Ig_EVA1 Immunoglobulin 98.5 3.1E-06 6.7E-11 58.9 10.5 76 114-190 5-102 (115)
267 cd05846 Ig1_MRC-OX-2_like Firs 98.5 1.5E-06 3.3E-11 58.6 8.6 78 122-203 1-96 (97)
268 cd05888 Ig1_Nectin-4_like Frst 98.5 3E-06 6.6E-11 57.4 9.9 77 222-304 2-99 (100)
269 cd04983 IgV_TCR_alpha_like Imm 98.5 9.2E-07 2E-11 61.2 7.6 73 113-189 4-92 (109)
270 cd04982 IgV_TCR_gamma Immunogl 98.5 9E-07 2E-11 62.0 7.4 75 212-288 5-99 (116)
271 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.3E-06 2.8E-11 58.4 7.8 67 116-186 9-75 (94)
272 cd05877 Ig_LP_like Immunoglobu 98.5 1.8E-06 3.8E-11 59.4 8.7 80 121-203 1-102 (106)
273 PF13927 Ig_3: Immunoglobulin 98.4 5.5E-07 1.2E-11 57.5 5.7 56 125-185 18-73 (75)
274 PF08205 C2-set_2: CD80-like C 98.4 1.8E-06 4E-11 57.2 8.3 68 220-289 14-84 (89)
275 cd05902 Ig_Neurocan Immunoglob 98.4 2.6E-06 5.6E-11 58.4 9.1 82 220-306 2-108 (110)
276 cd05714 Ig_CSPGs_LP Immunoglob 98.4 1.8E-06 3.8E-11 59.4 8.5 81 121-204 1-103 (106)
277 cd05887 Ig1_Nectin-3_like Firs 98.4 2.3E-06 5.1E-11 56.9 8.6 77 123-203 1-95 (96)
278 cd05884 Ig2_Necl-3 Second immu 98.4 2.6E-06 5.6E-11 55.3 8.4 67 223-291 2-71 (83)
279 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.6E-06 7.9E-11 54.7 8.9 63 124-190 1-68 (82)
280 cd05718 Ig1_PVR_like First imm 98.4 2.8E-06 6.1E-11 57.5 8.6 79 123-203 1-97 (98)
281 PHA02987 Ig domain OX-2-like p 98.4 3.6E-06 7.8E-11 61.8 9.2 84 118-206 26-124 (189)
282 cd05901 Ig_Versican Immunoglob 98.4 9E-06 2E-10 55.9 10.6 39 264-306 77-115 (117)
283 PHA02987 Ig domain OX-2-like p 98.4 5.7E-06 1.2E-10 60.8 10.1 91 214-310 24-127 (189)
284 cd04984 IgV_L_lambda Immunoglo 98.4 2.2E-06 4.9E-11 57.9 7.4 69 216-288 2-85 (98)
285 cd05899 IgV_TCR_beta Immunoglo 98.4 2E-06 4.3E-11 59.6 7.3 71 113-188 4-93 (110)
286 cd05846 Ig1_MRC-OX-2_like Firs 98.4 7.2E-06 1.6E-10 55.3 9.6 79 220-304 1-96 (97)
287 cd07705 Ig2_Necl-1 Second immu 98.3 1.1E-05 2.3E-10 52.5 9.6 62 125-190 2-69 (83)
288 cd05884 Ig2_Necl-3 Second immu 98.3 6.1E-06 1.3E-10 53.6 8.2 62 125-190 2-69 (83)
289 cd05755 Ig2_ICAM-1_like Second 98.3 1E-05 2.2E-10 54.1 8.9 74 214-291 10-87 (100)
290 PF07686 V-set: Immunoglobulin 98.3 8E-06 1.7E-10 56.9 9.1 88 212-304 8-114 (114)
291 cd07706 IgV_TCR_delta Immunogl 98.3 4.3E-06 9.4E-11 58.5 7.6 75 212-288 6-94 (116)
292 cd05716 Ig_pIgR Immunoglobulin 98.3 3.1E-06 6.8E-11 57.2 6.7 72 216-289 3-87 (98)
293 cd05886 Ig1_Nectin-1_like Firs 98.3 1.2E-05 2.7E-10 54.0 9.4 78 124-203 2-98 (99)
294 cd05902 Ig_Neurocan Immunoglob 98.3 5.7E-06 1.2E-10 56.7 7.8 80 122-204 2-107 (110)
295 cd00098 IgC Immunoglobulin Con 98.3 4.4E-06 9.6E-11 56.1 7.1 67 121-189 12-84 (95)
296 cd04982 IgV_TCR_gamma Immunogl 98.3 6.8E-06 1.5E-10 57.5 8.2 71 113-186 4-97 (116)
297 cd05767 IgC_MHC_II_alpha Class 98.3 1.2E-05 2.7E-10 53.4 8.8 70 217-289 12-84 (94)
298 cd07700 IgV_CD8_beta Immunoglo 98.3 3.8E-06 8.2E-11 57.8 6.6 71 216-288 2-94 (107)
299 cd05887 Ig1_Nectin-3_like Firs 98.3 2.1E-05 4.6E-10 52.3 9.8 77 222-304 2-95 (96)
300 cd00099 IgV Immunoglobulin var 98.2 4.4E-06 9.5E-11 57.3 6.7 67 119-189 3-89 (105)
301 cd05886 Ig1_Nectin-1_like Firs 98.2 2.5E-05 5.3E-10 52.5 9.9 37 264-304 61-98 (99)
302 cd05770 IgC_beta2m Class I maj 98.2 1.4E-05 3E-10 52.9 8.6 68 217-289 12-83 (93)
303 PF07686 V-set: Immunoglobulin 98.2 6.1E-06 1.3E-10 57.5 7.2 71 113-186 7-99 (114)
304 cd04980 IgV_L_kappa Immunoglob 98.2 6.5E-06 1.4E-10 56.5 7.1 71 113-185 6-90 (106)
305 cd05888 Ig1_Nectin-4_like Frst 98.2 2.2E-05 4.7E-10 53.2 9.5 78 124-203 2-99 (100)
306 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.4E-05 3.1E-10 53.3 8.4 67 220-289 14-83 (93)
307 cd05901 Ig_Versican Immunoglob 98.2 2.3E-05 5E-10 53.9 9.5 80 122-204 2-114 (117)
308 cd05772 IgC_SIRP Signal-regula 98.2 1.7E-05 3.7E-10 54.5 8.9 71 216-289 17-92 (111)
309 smart00407 IGc1 Immunoglobulin 98.2 1.3E-05 2.7E-10 51.1 7.6 68 222-289 1-71 (75)
310 cd07706 IgV_TCR_delta Immunogl 98.2 1.1E-05 2.4E-10 56.4 7.9 72 113-186 5-92 (116)
311 cd05766 IgC_MHC_II_beta Class 98.2 2.2E-05 4.8E-10 52.3 8.8 69 217-289 11-83 (94)
312 PHA03270 envelope glycoprotein 98.2 0.00079 1.7E-08 56.0 18.9 160 82-248 184-363 (466)
313 cd05889 Ig1_DNAM-1_like First 98.2 2.7E-05 5.8E-10 51.9 8.8 65 123-189 1-83 (96)
314 cd05712 Ig_Siglec_N Immunoglob 98.1 2.2E-05 4.8E-10 55.1 8.6 76 211-288 5-102 (119)
315 KOG1480|consensus 98.1 1.4E-06 3E-11 76.6 2.8 200 106-315 23-231 (909)
316 cd04984 IgV_L_lambda Immunoglo 98.1 1.2E-05 2.7E-10 54.3 6.9 64 119-185 3-82 (98)
317 cd00096 Ig Immunoglobulin doma 98.1 2E-05 4.4E-10 49.2 7.5 66 223-289 1-66 (74)
318 cd07699 IgC_L Immunoglobulin C 98.1 1.2E-05 2.6E-10 54.3 6.6 69 119-189 14-88 (100)
319 cd07699 IgC_L Immunoglobulin C 98.1 9.5E-06 2.1E-10 54.8 5.8 71 219-289 16-89 (100)
320 smart00407 IGc1 Immunoglobulin 98.1 3.7E-05 8E-10 49.0 8.0 63 124-189 1-70 (75)
321 cd05720 Ig_CD8_alpha Immunoglo 98.1 1.7E-05 3.8E-10 54.1 6.9 67 217-287 3-90 (104)
322 PHA03273 envelope glycoprotein 98.0 0.0014 3E-08 55.1 18.2 158 80-244 198-377 (486)
323 cd05712 Ig_Siglec_N Immunoglob 98.0 4.1E-05 8.9E-10 53.7 8.3 77 24-100 2-102 (119)
324 cd04981 IgV_H Immunoglobulin ( 98.0 2.6E-05 5.7E-10 54.5 7.0 74 212-287 4-97 (117)
325 cd05889 Ig1_DNAM-1_like First 98.0 0.00011 2.4E-09 49.0 9.4 76 221-302 1-93 (96)
326 cd07694 Ig2_CD4 Second immunog 98.0 6E-05 1.3E-09 48.3 7.3 61 118-186 10-71 (88)
327 cd07696 IgC_CH3 CH3 domain (th 98.0 8.8E-05 1.9E-09 49.6 8.3 71 217-289 11-86 (96)
328 cd05716 Ig_pIgR Immunoglobulin 97.9 6.5E-05 1.4E-09 50.7 7.7 71 31-101 2-87 (98)
329 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00014 3.1E-09 48.2 8.6 72 214-289 10-84 (97)
330 cd05772 IgC_SIRP Signal-regula 97.9 0.00013 2.8E-09 50.2 8.6 66 120-189 19-91 (111)
331 cd05847 IgC_CH2_IgE CH2 domain 97.9 6.9E-05 1.5E-09 49.8 7.1 70 219-289 13-86 (94)
332 cd05766 IgC_MHC_II_beta Class 97.9 0.00019 4.1E-09 47.8 9.0 67 121-189 13-82 (94)
333 cd05768 IgC_CH4 CH4 domain (fo 97.9 5.1E-05 1.1E-09 51.4 6.2 72 218-289 14-91 (102)
334 cd05719 Ig2_PVR_like Second im 97.9 0.00013 2.8E-09 48.6 7.9 78 220-303 15-94 (95)
335 cd05720 Ig_CD8_alpha Immunoglo 97.9 5.6E-05 1.2E-09 51.6 6.3 64 119-185 3-88 (104)
336 PF07654 C1-set: Immunoglobuli 97.9 8.7E-05 1.9E-09 48.3 6.9 69 219-290 7-78 (83)
337 cd05767 IgC_MHC_II_alpha Class 97.9 0.00027 5.9E-09 46.9 9.3 64 121-189 14-83 (94)
338 cd07692 Ig_CD3_epsilon Immunog 97.9 0.00012 2.5E-09 44.0 6.6 51 218-287 5-55 (65)
339 cd07700 IgV_CD8_beta Immunoglo 97.8 9.2E-05 2E-09 50.9 7.2 66 118-185 2-91 (107)
340 cd05769 IgC_TCR_beta T cell re 97.8 0.0001 2.2E-09 50.9 7.2 73 219-291 17-94 (115)
341 PHA03269 envelope glycoprotein 97.8 0.0073 1.6E-07 51.2 19.1 202 74-287 283-512 (566)
342 cd07703 Ig2_Nectin-2_like Seco 97.8 0.00013 2.9E-09 48.4 7.5 76 221-302 16-93 (95)
343 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.00028 6.1E-09 47.0 8.8 66 122-189 14-82 (93)
344 cd05770 IgC_beta2m Class I maj 97.8 0.0003 6.6E-09 46.6 8.6 66 121-189 14-82 (93)
345 cd07697 IgC_TCR_gamma T cell r 97.8 0.00013 2.8E-09 48.6 6.9 67 219-289 15-85 (96)
346 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00015 3.3E-09 48.2 7.1 67 121-189 13-85 (94)
347 smart00406 IGv Immunoglobulin 97.8 0.00012 2.5E-09 47.4 6.2 62 222-285 1-81 (81)
348 PHA03271 envelope glycoprotein 97.7 0.022 4.8E-07 47.4 21.9 168 72-246 199-387 (490)
349 PF08205 C2-set_2: CD80-like C 97.7 0.00022 4.8E-09 47.1 6.7 65 122-189 14-83 (89)
350 PF07654 C1-set: Immunoglobuli 97.7 0.00028 6E-09 45.9 6.8 63 121-189 7-76 (83)
351 cd00096 Ig Immunoglobulin doma 97.7 0.00025 5.5E-09 44.0 6.6 61 125-189 1-65 (74)
352 cd05719 Ig2_PVR_like Second im 97.6 0.00043 9.3E-09 46.1 7.6 77 122-201 15-93 (95)
353 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00027 5.9E-09 42.8 5.8 62 120-205 4-65 (69)
354 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00027 5.8E-09 47.2 6.4 31 119-150 11-42 (96)
355 cd04981 IgV_H Immunoglobulin ( 97.6 0.00055 1.2E-08 47.8 8.2 73 27-99 3-97 (117)
356 cd04985 IgC_CH1 CH1 domain (fi 97.6 0.00042 9.1E-09 46.2 7.1 70 219-289 15-87 (95)
357 smart00406 IGv Immunoglobulin 97.6 0.0002 4.3E-09 46.3 5.5 61 124-185 1-81 (81)
358 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00026 5.6E-09 47.9 6.0 67 120-189 14-90 (102)
359 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.001 2.2E-08 44.1 8.4 81 117-201 11-95 (97)
360 cd07697 IgC_TCR_gamma T cell r 97.6 0.00034 7.3E-09 46.6 6.2 39 24-62 4-46 (96)
361 cd07691 Ig_CD3_gamma_delta Imm 97.5 0.00047 1E-08 41.8 5.7 49 220-287 6-54 (69)
362 cd05769 IgC_TCR_beta T cell re 97.5 0.00044 9.6E-09 47.7 6.3 66 121-189 17-91 (115)
363 cd07703 Ig2_Nectin-2_like Seco 97.5 0.001 2.2E-08 44.2 7.8 72 123-198 16-90 (95)
364 PHA03270 envelope glycoprotein 97.5 0.0031 6.6E-08 52.6 11.8 124 164-289 180-308 (466)
365 PHA03269 envelope glycoprotein 97.5 0.0024 5.2E-08 54.0 11.1 126 163-289 286-417 (566)
366 cd07692 Ig_CD3_epsilon Immunog 97.4 0.00038 8.3E-09 41.8 4.7 51 34-99 5-55 (65)
367 PHA02982 hypothetical protein; 97.4 0.0083 1.8E-07 45.0 12.5 119 29-150 32-173 (251)
368 cd04986 IgC_CH2 CH2 domain (se 97.4 0.00057 1.2E-08 45.6 6.0 70 217-290 16-90 (99)
369 PHA03273 envelope glycoprotein 97.4 0.0057 1.2E-07 51.6 12.2 122 166-289 198-325 (486)
370 cd07689 Ig2_VCAM-1 Second immu 97.3 0.0012 2.6E-08 43.6 6.5 66 119-186 12-83 (99)
371 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0016 3.4E-08 43.4 6.9 65 121-189 15-86 (95)
372 PHA03271 envelope glycoprotein 97.3 0.013 2.9E-07 48.7 13.0 126 163-290 204-336 (490)
373 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0025 5.4E-08 43.5 7.2 73 113-185 4-93 (115)
374 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0034 7.4E-08 42.8 7.7 73 214-288 7-96 (115)
375 PHA02633 hypothetical protein; 97.2 0.0009 2E-08 39.5 4.3 42 264-309 16-57 (63)
376 KOG1480|consensus 97.1 0.00063 1.4E-08 60.6 4.7 154 26-190 29-206 (909)
377 cd04986 IgC_CH2 CH2 domain (se 97.1 0.0022 4.8E-08 42.8 5.9 29 121-150 18-47 (99)
378 PF08204 V-set_CD47: CD47 immu 97.1 0.0022 4.8E-08 44.8 5.8 71 33-104 24-111 (130)
379 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0077 1.7E-07 39.8 7.2 73 216-290 11-87 (99)
380 PF07354 Sp38: Zona-pellucida- 96.8 0.0022 4.8E-08 49.9 4.7 50 233-289 11-60 (271)
381 PF08204 V-set_CD47: CD47 immu 96.8 0.0028 6.2E-08 44.2 4.4 78 219-304 26-119 (130)
382 PHA02982 hypothetical protein; 96.6 0.052 1.1E-06 40.9 10.4 118 119-245 36-173 (251)
383 PHA03042 CD47-like protein; Pr 96.4 0.028 6.2E-07 44.1 8.0 71 219-305 30-105 (286)
384 PHA02633 hypothetical protein; 96.2 0.014 3E-07 34.6 4.3 40 164-206 16-55 (63)
385 PHA03042 CD47-like protein; Pr 95.7 0.073 1.6E-06 41.9 7.7 59 33-102 28-94 (286)
386 PF07354 Sp38: Zona-pellucida- 94.9 0.043 9.2E-07 43.1 4.0 44 139-186 12-57 (271)
387 PF11465 Receptor_2B4: Natural 94.7 0.11 2.3E-06 34.8 5.1 38 264-304 69-106 (108)
388 PF02124 Marek_A: Marek's dise 94.4 1.7 3.8E-05 33.4 14.9 101 139-246 6-117 (211)
389 PF11465 Receptor_2B4: Natural 94.1 0.3 6.5E-06 32.7 6.2 46 142-189 46-93 (108)
390 PF06328 Lep_receptor_Ig: Ig-l 93.8 0.37 8E-06 31.6 6.2 68 113-185 9-81 (89)
391 PHA02865 MHC-like TNF binding 93.7 0.31 6.8E-06 40.3 7.0 21 222-242 216-238 (338)
392 PF05790 C2-set: Immunoglobuli 93.6 0.65 1.4E-05 29.7 6.9 25 265-289 42-67 (80)
393 KOG4597|consensus 93.3 0.13 2.8E-06 43.9 4.2 85 214-305 205-292 (560)
394 PF06328 Lep_receptor_Ig: Ig-l 92.9 0.81 1.8E-05 30.0 6.7 68 211-285 9-81 (89)
395 cd05890 Ig2_Nectin-1_like Seco 92.8 0.74 1.6E-05 30.2 6.2 72 222-303 22-97 (98)
396 KOG0613|consensus 92.6 0.25 5.5E-06 47.6 5.6 163 119-291 346-518 (1205)
397 PHA02865 MHC-like TNF binding 92.5 0.61 1.3E-05 38.6 7.0 23 124-147 216-238 (338)
398 PF02124 Marek_A: Marek's dise 92.5 3.9 8.5E-05 31.5 12.2 98 49-151 7-117 (211)
399 PHA02914 Immunoglobulin-like d 92.3 6.4 0.00014 33.4 14.1 122 30-152 273-422 (500)
400 PHA02914 Immunoglobulin-like d 90.2 11 0.00023 32.1 16.8 159 119-289 276-467 (500)
401 KOG0613|consensus 90.1 0.69 1.5E-05 44.8 5.7 75 214-291 343-418 (1205)
402 PHA03052 Hypothetical protein; 89.8 1.1 2.5E-05 27.1 4.5 36 28-63 4-44 (69)
403 PF11049 KSHV_K1: Glycoprotein 87.2 2.3 5E-05 25.5 4.5 61 126-210 2-62 (71)
404 TIGR00864 PCC polycystin catio 86.2 57 0.0012 35.8 25.2 197 30-245 1876-2083(2740)
405 PF05790 C2-set: Immunoglobuli 85.8 7.1 0.00015 25.0 7.3 38 139-186 26-63 (80)
406 PHA03052 Hypothetical protein; 84.3 7.2 0.00016 23.8 6.7 39 115-153 5-43 (69)
407 PHA03189 UL14 tegument protein 83.8 11 0.00024 30.7 8.2 25 264-289 132-156 (348)
408 TIGR00864 PCC polycystin catio 83.8 74 0.0016 35.0 24.3 108 119-244 1797-1906(2740)
409 PHA03189 UL14 tegument protein 83.7 6.4 0.00014 32.0 6.9 29 77-105 131-160 (348)
410 KOG4597|consensus 78.5 4.4 9.6E-05 35.1 4.7 80 118-203 207-291 (560)
411 PHA03112 IL-18 binding protein 74.4 24 0.00051 25.3 6.7 74 218-291 36-121 (141)
412 KOG1026|consensus 74.2 7.1 0.00015 36.5 5.2 147 119-291 204-353 (774)
413 cd05890 Ig2_Nectin-1_like Seco 71.1 27 0.00059 23.1 6.9 61 125-189 23-86 (98)
414 PHA03282 envelope glycoprotein 66.3 18 0.00039 31.5 5.5 42 265-308 123-164 (540)
415 PF06832 BiPBP_C: Penicillin-B 64.7 36 0.00078 22.1 6.9 53 222-291 31-83 (89)
416 PF06832 BiPBP_C: Penicillin-B 64.4 32 0.0007 22.3 5.6 26 36-62 31-56 (89)
417 PHA03240 envelope glycoprotein 61.9 35 0.00076 26.3 5.8 26 30-55 32-59 (258)
418 PHA03240 envelope glycoprotein 58.6 70 0.0015 24.8 6.9 23 163-185 102-124 (258)
419 PHA03112 IL-18 binding protein 54.5 77 0.0017 22.8 6.2 28 120-148 36-63 (141)
420 PHA03283 envelope glycoprotein 53.3 37 0.00079 30.3 5.3 40 265-308 133-172 (542)
421 PF03921 ICAM_N: Intercellular 52.7 65 0.0014 21.3 8.8 81 111-207 7-89 (91)
422 PRK14081 triple tyrosine motif 52.4 2.1E+02 0.0045 27.0 29.1 249 33-307 302-574 (667)
423 PF02440 Adeno_E3_CR1: Adenovi 47.5 63 0.0014 19.6 5.6 21 33-55 2-22 (63)
424 PF02010 REJ: REJ domain; Int 44.7 24 0.00051 31.2 3.2 143 164-309 146-302 (440)
425 PF15240 Pro-rich: Proline-ric 43.8 21 0.00045 26.8 2.2 25 3-27 1-25 (179)
426 PHA03283 envelope glycoprotein 38.0 2.4E+02 0.0052 25.5 7.9 75 164-241 132-233 (542)
427 PF05955 Herpes_gp2: Equine he 37.8 1.8E+02 0.0038 21.9 12.7 64 225-289 112-179 (226)
428 PHA03282 envelope glycoprotein 32.9 1.2E+02 0.0025 26.9 5.2 44 160-204 118-161 (540)
429 PF03921 ICAM_N: Intercellular 32.1 1.5E+02 0.0033 19.5 9.0 79 212-308 10-89 (91)
430 PF10430 Ig_Tie2_1: Tie-2 Ig-l 31.7 1.5E+02 0.0033 19.4 6.7 66 220-286 15-83 (96)
431 KOG0200|consensus 31.5 4.4E+02 0.0094 24.7 9.2 117 164-289 11-140 (609)
432 PHA03286 envelope glycoprotein 29.9 1.3E+02 0.0028 26.5 4.9 40 265-307 126-165 (492)
433 KOG1026|consensus 29.6 35 0.00076 32.2 1.8 34 214-247 201-234 (774)
434 PF11141 DUF2914: Protein of u 26.8 1.6E+02 0.0034 18.0 6.8 49 236-291 8-56 (66)
435 PF05404 TRAP-delta: Transloco 23.3 3.3E+02 0.0071 20.5 8.1 59 36-103 44-106 (167)
436 PF01688 Herpes_gI: Alphaherpe 23.1 2.2E+02 0.0048 21.2 4.6 26 265-290 123-148 (161)
437 PHA03281 envelope glycoprotein 22.6 2.2E+02 0.0048 25.9 5.2 41 265-308 297-337 (642)
438 PF05984 Cytomega_UL20A: Cytom 22.2 1.5E+02 0.0031 19.0 3.0 21 1-21 1-21 (100)
439 PF01688 Herpes_gI: Alphaherpe 21.7 1.8E+02 0.0038 21.7 3.9 25 164-188 122-146 (161)
440 PF02480 Herpes_gE: Alphaherpe 21.1 32 0.00069 30.4 0.0 41 265-308 88-128 (439)
441 PF02010 REJ: REJ domain; Int 20.8 1.2E+02 0.0026 26.8 3.5 114 125-244 3-127 (440)
442 PRK14081 triple tyrosine motif 20.7 7.4E+02 0.016 23.6 20.5 187 30-240 395-612 (667)
443 PF12988 DUF3872: Domain of un 20.3 1.1E+02 0.0025 21.8 2.5 17 30-46 41-57 (137)
No 1
>KOG3513|consensus
Probab=100.00 E-value=5.4e-33 Score=246.94 Aligned_cols=265 Identities=19% Similarity=0.307 Sum_probs=206.5
Q ss_pred CCceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCcc-ceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEe
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRN-INQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSS 97 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~ 97 (323)
+...+..+.+.....|+.+.|.|. +.|.|++.|.|.|.. +... .........+.|...+..|+|.|.|.+
T Consensus 241 P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r-------~~~~~~~~vL~I~nv~~~D~G~Y~C~A 313 (1051)
T KOG3513|consen 241 PKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR-------ATYSNYGKVLKIPNVQYEDAGEYECIA 313 (1051)
T ss_pred CccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc-------eeeeccccEEEecccCcCCCeEEEEEE
Confidence 344444555677889999999999 678899999997774 3332 122222343344433444599999999
Q ss_pred eccCCccce--------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc---EEecee
Q psy15235 98 LFIPRMNAI--------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR---LTQSKD 166 (323)
Q Consensus 98 ~~~~~~~~~--------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~~~ 166 (323)
.|..+.... .|.|...++...+..|+.+++.|.+.|.| .++|+|+++|.++.. ..+ +.-...
T Consensus 314 eN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~pl~~----~~r~~~~~i~~g 386 (1051)
T KOG3513|consen 314 ENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP---NPTVKWLKNGEPLEP----AERDPRYKIDDG 386 (1051)
T ss_pred ecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC---CCceEEeeCCeecCc----cCCCcceEEeCC
Confidence 998887533 33344467777788999999999999988 899999999999976 444 556678
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec-ceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEEC
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK-PTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIG 242 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 242 (323)
.|.|.+++..|+|.|.|.| .|.. +.....+.|.|... |.+...+ ...+..|..+.|.|...+.|.|.++|.++
T Consensus 387 ~L~is~v~~~dsg~YQC~A-~Nk~--G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~ 463 (1051)
T KOG3513|consen 387 TLIISNVQESDSGVYQCIA-ENKY--GTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKG 463 (1051)
T ss_pred EEEEEecccccCeEEEeee-eccc--ceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcC
Confidence 8999999999999999999 8884 44667778888774 5554222 34677899999999999999999999999
Q ss_pred CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChh
Q psy15235 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRV 314 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~ 314 (323)
+.. ...++|+.+. ..++|.|.+++.+|.|.|+|.|.|..|+ +.....|.|++++.....+
T Consensus 464 ~~~-~~~~~r~~i~-------edGtL~I~n~t~~DaG~YtC~A~N~~G~----a~~~~~L~Vkd~tri~~~P 523 (1051)
T KOG3513|consen 464 GEK-LLQSGRIRIL-------EDGTLEISNVTRSDAGKYTCVAENKLGK----AESTGNLIVKDATRITLAP 523 (1051)
T ss_pred Ccc-cccCceEEEC-------CCCcEEecccCcccCcEEEEEEEcccCc----cceEEEEEEecCceEEecc
Confidence 884 3466888887 4899999999999999999999999977 8899999999887665433
No 2
>KOG3513|consensus
Probab=100.00 E-value=1.2e-30 Score=232.18 Aligned_cols=265 Identities=19% Similarity=0.280 Sum_probs=205.3
Q ss_pred EEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235 26 TYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM 103 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~ 103 (323)
..+.+..+..|+.++|.|. +.|.|.|+|++||.++.......+ .....+.+.|...+.+|+|.|.|.++|..+.
T Consensus 336 ~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~----~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~ 411 (1051)
T KOG3513|consen 336 QKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPR----YKIDDGTLIISNVQESDSGVYQCIAENKYGT 411 (1051)
T ss_pred cccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcc----eEEeCCEEEEEecccccCeEEEeeeecccce
Confidence 3456788899999999999 567899999999999886522222 2345778888888888899999999998777
Q ss_pred cceeeeeee---------CCce--eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEe
Q psy15235 104 NAITGNYDI---------EPKY--KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIR 171 (323)
Q Consensus 104 ~~~~~~~~~---------~~~~--~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~ 171 (323)
......+.+ .+.. ..+..|.++.|.|...+.| .+.++|.+++..+.. ++|+. ..+++|.|.
T Consensus 412 i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP---~p~~~W~k~~~~~~~----~~r~~i~edGtL~I~ 484 (1051)
T KOG3513|consen 412 IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP---KPKVSWLKGGEKLLQ----SGRIRILEDGTLEIS 484 (1051)
T ss_pred EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC---cceEEEEcCCccccc----CceEEECCCCcEEec
Confidence 544333333 2222 2467899999999999998 899999999886666 78887 688999999
Q ss_pred eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeec
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFR 248 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~ 248 (323)
+++.+|+|.|+|.| .|.. +.......|.|..++.+. .+.+..+..|+.++|.|.+...| ...+.|.+||..+..
T Consensus 485 n~t~~DaG~YtC~A-~N~~--G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~ 561 (1051)
T KOG3513|consen 485 NVTRSDAGKYTCVA-ENKL--GKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDF 561 (1051)
T ss_pred ccCcccCcEEEEEE-Eccc--CccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhc
Confidence 99999999999999 7873 446677788888888776 44466788999999999997665 447999999997753
Q ss_pred c--CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235 249 S--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 249 ~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~ 312 (323)
. ...+... ++.....|+|.+++.+|+|.|.|+|.... .+.++...|.|.++|.+..
T Consensus 562 ~~~~~~~~~~----~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~----Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 562 NPDGDHFEIN----DGSDSGRLTIANVSLEDSGKYTCVAQTAL----DSASARADLLVRGPPGPPP 619 (1051)
T ss_pred cCCCCceEEe----CCcCccceEEEeeccccCceEEEEEEEee----cchhcccceEEecCCCCCC
Confidence 2 2222222 11123679999999999999999999977 5577777788888777654
No 3
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=2.3e-28 Score=201.55 Aligned_cols=245 Identities=20% Similarity=0.293 Sum_probs=161.6
Q ss_pred eceEEecCCcEEEEEEe-------ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235 29 GDTEIMEGAPINISCIL-------TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP 101 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~-------~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~ 101 (323)
....+.+|+.+.|.|.. .+.+.++|+|+|...... ...+ ....+.+.-....|+|.|+|.+.|..
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~-------~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRI-------IPID-NGSNMLILNPTQSDSGIYICITKNET 105 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceE-------EEcc-CCceEEEcccCcccCeEEEEEEECCC
Confidence 34557799999999984 245789999987532211 1111 12224444444556999999999877
Q ss_pred Cccceeeeeee----C------CceeEEecCCcEEEEEEe-----ecCCCCCCceEEEEECCeeccccccccCcEE-ece
Q psy15235 102 RMNAITGNYDI----E------PKYKVFEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSK 165 (323)
Q Consensus 102 ~~~~~~~~~~~----~------~~~~~~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~ 165 (323)
+.......+.+ . +....+.+|..+.|.|.. .+.+ .+.++|+++.. + . ..++. ...
T Consensus 106 g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~---~~~i~W~k~~~-~-~----~~r~~~~~~ 176 (326)
T PHA02785 106 YCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV---NADIIWSGHRR-L-R----NKRLKQRTP 176 (326)
T ss_pred cceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC---CceEEEccCCc-c-C----CcceEecCC
Confidence 65443333322 1 122335689999999972 3445 68999988642 2 2 34443 335
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCce--eeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCC---cE
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA--QADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPP---TV 237 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~--~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~ 237 (323)
..|.|.+++.+|+|.|+|.+ .+..+...... .+.+.|.. +|.+..+....+..|+.++|.|.+.|.|.+ .+
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~-~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVL-KYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred CeEEEeecChhhCeEEEEEE-EeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 68999999999999999999 66644332222 33444432 455555666777889999999999988764 79
Q ss_pred EEEECCeeeeccC----CeeeeecCCC----CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 238 EWRIGNDTYFRSQ----GRIKLSEHPE----KGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 238 ~W~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.|++||..+...+ .++....... .......|+|.+++.+|.|+|+|.|.|..|.
T Consensus 256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 9999998774321 2333221000 0112568999999999999999999998843
No 4
>KOG4221|consensus
Probab=99.96 E-value=5.7e-27 Score=208.50 Aligned_cols=256 Identities=23% Similarity=0.390 Sum_probs=190.4
Q ss_pred EEecCCcEEEEEEe--cc--CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec-----ccCcceEEEeeccCC
Q psy15235 32 EIMEGAPINISCIL--TI--FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA-----ILESGYVQSSLFIPR 102 (323)
Q Consensus 32 ~v~~G~~v~L~C~~--~~--~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~G~Y~C~~~~~~~ 102 (323)
.+.+|.++.|.|.. .. .+.+.|.++|..+......... -..++++.+..... -++|.|.|.++-...
T Consensus 50 d~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~----~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~ 125 (1381)
T KOG4221|consen 50 DAMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ----LLSNGSLYISSVLASKHNKVDEGVYQCLATVEDV 125 (1381)
T ss_pred ccccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh----hccCCceeEeeecccccccccCceEEEEEEcccc
Confidence 44899999999993 23 6789999999877764111111 12245555544444 339999999986532
Q ss_pred ccce--e--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEe
Q psy15235 103 MNAI--T--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIR 171 (323)
Q Consensus 103 ~~~~--~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~ 171 (323)
...+ . +.+...+....+..|+++.|.|.+.+.+ .+.+.|.++..++.. +.++. ..+..|.|.
T Consensus 126 gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~---~p~i~w~kn~~pl~~----~~r~i~lpsG~L~I~ 198 (1381)
T KOG4221|consen 126 GSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEP---VPTIMWLKNDQPLPL----DSRVIVLPSGALEIS 198 (1381)
T ss_pred ceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCcc---CceeEEecccccccC----CCcEEEcCCCcEEec
Confidence 2211 1 1222255566688899999999999966 779999999998877 66665 788899999
Q ss_pred eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-------eeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~ 244 (323)
++++.|.|.|+|.+ .+....+. +..+.|+|...|. +..+....+.+|+++.|.|.+.|.|.|.++|.+|+.
T Consensus 199 ~~qp~d~g~yrc~v-t~g~~~r~-S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~ 276 (1381)
T KOG4221|consen 199 GLQPSDTGEYRCVV-TGGASQRT-SNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE 276 (1381)
T ss_pred ccccCCCceEEEEE-ecCCcCCc-cceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence 99999999999999 66644433 6667777774332 234556778899999999999999999999999999
Q ss_pred eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
.+...+.++.+. ..+.|.|.+++.+|+|.|+|.|.|.. .+..+...|.|..+|...
T Consensus 277 ~i~~ds~rivl~-------g~~slliS~a~~~dSg~YtC~Atn~~----D~idasaev~V~a~P~~~ 332 (1381)
T KOG4221|consen 277 KISVDSYRIVLV-------GGSSLLISNATDDDSGKYTCRATNTN----DSIDASAEVTVLAPPGFT 332 (1381)
T ss_pred eeeecceEEEEe-------cccceEEeccccccCceEEEEecCCC----cccccceEEEEEcCCCCC
Confidence 987666666655 57889999999999999999999955 446666677776665544
No 5
>KOG4194|consensus
Probab=99.96 E-value=1.9e-27 Score=198.18 Aligned_cols=263 Identities=19% Similarity=0.298 Sum_probs=188.1
Q ss_pred EEeeceEEecCCcEEEEEEecc----CceEEEEEcCccceeeccCcceE-EE-------eeee--CCeEEEEEeecccCc
Q psy15235 26 TYFGDTEIMEGAPINISCILTI----FEQVKWQLNGRNINQSSVDSGFA-AT-------ANLT--EDNFKYSIHEAILES 91 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g~~~~~~~~~~~~~-~~-------~~~~--~~~~~l~i~~~~~~G 91 (323)
+.|.++.+..|+.++|+|.+.. +..+.|.++.+........+... .. .+.. .+.+.|....-+++|
T Consensus 508 ~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g 587 (873)
T KOG4194|consen 508 TQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG 587 (873)
T ss_pred cCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence 4566677889999999999543 35899999776433321111110 00 1111 333444444445599
Q ss_pred ceEEEeeccCCcc-cee--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee-ccccccccCcE
Q psy15235 92 GYVQSSLFIPRMN-AIT--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS-ITEATELSGRL 161 (323)
Q Consensus 92 ~Y~C~~~~~~~~~-~~~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~-~~~~~~~~~~~ 161 (323)
.|.|.++|..++. ... |.|.-.|.......|+.+.|.|.+.|.| .|.|.|.++|.. .+... ..|.
T Consensus 588 rYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P---~PeIawqkdggtdFPAA~--eRRl 662 (873)
T KOG4194|consen 588 RYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHP---RPEIAWQKDGGTDFPAAR--ERRL 662 (873)
T ss_pred eEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCC---CcceeehhcCCCCCchhh--hhee
Confidence 9999999987774 222 2233355555677899999999999999 899999998865 43311 2233
Q ss_pred E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-eeEEeeCCeEEEEEEEecCCC-CcE
Q psy15235 162 T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-TLTVIEGEKLRLECLVVGSPP-PTV 237 (323)
Q Consensus 162 ~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p~-~~~ 237 (323)
. .....+.|.+++.+|.|.|+|.| .|.. +..++.++++|...|....|. ...+..|+++.|.|.+.+.|. |.+
T Consensus 663 ~Vmpedd~f~Itnvk~eD~GiYtC~A-~n~A--G~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~ 739 (873)
T KOG4194|consen 663 HVMPEDDVFFITNVKIEDQGIYTCTA-QNVA--GQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL 739 (873)
T ss_pred eecCCCCEEEEecccccccceeEEee-eccc--cceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence 3 66778999999999999999999 7884 457888899999988776554 566889999999999999877 899
Q ss_pred EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
.|+++++++.... +.+.. ....-|++.+...+|+|.|+|...|..|. ....+.+.+..+
T Consensus 740 ~W~k~d~pil~t~-rh~f~------d~dQllvv~~~~~~daG~yTcem~~~~~~----~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 740 EWFKEDKPILITE-RHTFP------DGDQLLVVKENLVEDAGIYTCEMSNTLGT----ERIHICLLVYQK 798 (873)
T ss_pred cccCCCCceEEee-cccCC------CCCeEEEEEehhhhhcceEEEEEEeeccc----eeeEEEEEEeec
Confidence 9999998875442 22222 14678999999999999999999999976 555555554443
No 6
>KOG4221|consensus
Probab=99.95 E-value=2.9e-27 Score=210.31 Aligned_cols=254 Identities=23% Similarity=0.303 Sum_probs=194.0
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN 104 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~ 104 (323)
.+.+..+..|+++.|.|.+ .+.+.++|.++..++... . .+.... ++.+.|.-..-.|.|.|+|.+++.....
T Consensus 146 ~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~----~-r~i~lp-sG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 146 QPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD----S-RVIVLP-SGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred CccceeEecCCcEEEEEEEcCccCceeEEecccccccCC----C-cEEEcC-CCcEEecccccCCCceEEEEEecCCcCC
Confidence 3456789999999999994 456789999999877775 2 222222 4444444444556999999998765442
Q ss_pred -----ceee----------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEE
Q psy15235 105 -----AITG----------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSI 168 (323)
Q Consensus 105 -----~~~~----------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l 168 (323)
.+.. .|...|...++.+|+++.|.|.+.+.+ .+.|.|.|||..+... +.++. .....|
T Consensus 220 ~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p---~p~v~Wlrng~~i~~d---s~rivl~g~~sl 293 (1381)
T KOG4221|consen 220 TSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVP---KPSVKWLRNGEKISVD---SYRIVLVGGSSL 293 (1381)
T ss_pred ccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCC---CCceEEeeCCeeeeec---ceEEEEecccce
Confidence 1111 122266667788999999999999999 8999999999988761 23444 567889
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
.|.+++.+|+|.|+|+| +|. .....+...++|+.+|.+. .+......++.++++.|.+.|.|.|.+.|++||..+.
T Consensus 294 liS~a~~~dSg~YtC~A-tn~--~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i 370 (1381)
T KOG4221|consen 294 LISNATDDDSGKYTCRA-TNT--NDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII 370 (1381)
T ss_pred EEeccccccCceEEEEe-cCC--CcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccC
Confidence 99999999999999999 774 4567788899999988766 5556777889999999999999999999999999876
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
. ...+++. ....|.|..+-..|.|.|.|.+.|..|. ....+.|.+...
T Consensus 371 p-sdy~ki~-------~~~~lrIlgi~~sdeg~yQcvaen~~G~----a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 371 P-SDYFKIV-------GGGNLRILGIVKSDEGFYQCVAENDAGS----AQAAAQLEVVPQ 418 (1381)
T ss_pred c-ccceEec-------CCCCcEEEEEecccchhhhhhhccCccc----ccchhhheeccC
Confidence 5 4555554 2333999999999999999999999966 566666644444
No 7
>KOG4222|consensus
Probab=99.93 E-value=5.9e-25 Score=194.73 Aligned_cols=273 Identities=20% Similarity=0.285 Sum_probs=199.2
Q ss_pred CceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEE-EEEee---cc-cCcceE
Q psy15235 22 DGKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK-YSIHE---AI-LESGYV 94 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~---~~-~~G~Y~ 94 (323)
...+..+.++.+..|+.++|.|. +.|.+.++|+|+|........... ++...++.+. +.+.. .. |.|.|+
T Consensus 32 p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~sh---R~~lp~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 32 PRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSH---RFLLPDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred CceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCc---ceecCCccEEEEecccCCcccCCCceeE
Confidence 44455677888999999999999 456789999999964433211111 1122233332 22221 11 389999
Q ss_pred EEeeccCCcc----------ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e
Q psy15235 95 QSSLFIPRMN----------AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q 163 (323)
Q Consensus 95 C~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~ 163 (323)
|.+.+..+.. .+...+.+.+.-..+..|+.+.|.|.-....| .+.+.|.|||+++.. ....++. .
T Consensus 109 cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghp--eptvSw~Kdg~pl~~--~~~~~~~li 184 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHP--EPTVSWVKDGKPLDH--YDVPIIALI 184 (1281)
T ss_pred eeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCC--CCcceeecCCCcccc--ccceeEEEe
Confidence 9998876553 23334444566666778999999998755444 789999999998862 1122332 6
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 242 (323)
....|.|.++...|+|.|.|.+ +|..+.. .+....+.|+.+|... .+.+..+..|..+.+.|.+.|.|.|.+.|.++
T Consensus 185 sgG~LlIsnvrksD~GtY~CVa-tNmvG~R-eS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~ 262 (1281)
T KOG4222|consen 185 SGGNLLISNVRKSDEGTYACVA-TNMVGER-ESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD 262 (1281)
T ss_pred cCCcEEEeccccCCCceeeeee-ccccccc-ccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeecc
Confidence 6788999999999999999999 8886553 5567789999988665 55577788899999999999999999999998
Q ss_pred CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhh
Q psy15235 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVE 315 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~ 315 (323)
+..+... ++.+.. ...+|.|.+++..|.|.|.|.+.|..|. -....++.|+++|.-..++.
T Consensus 263 ~~~~P~~--ry~i~~------d~qtl~i~r~tp~deg~y~C~a~n~vG~----l~asa~ltV~apP~f~kkp~ 323 (1281)
T KOG4222|consen 263 DPSLPRS--RYSILD------DTQTLRIDRVTPTDEGTYVCPAENLVGG----LEASATLTVQAPPSFGKKPR 323 (1281)
T ss_pred CCCCCcc--ceeeee------ccccccccccCCCcccceeeeccccccc----cccccceEEecCcccccccC
Confidence 7776533 333331 2588999999999999999999999977 67777888888776655443
No 8
>KOG4222|consensus
Probab=99.91 E-value=1.2e-23 Score=186.50 Aligned_cols=243 Identities=21% Similarity=0.307 Sum_probs=190.0
Q ss_pred eeceEEecCCcEEEEEE---eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235 28 FGDTEIMEGAPINISCI---LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN 104 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~---~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~ 104 (323)
+....+..|+.++|+|. +.+.+.+.|.|+|+.+... ....+.....+++.|...+-+|+|.|.|.++|..+..
T Consensus 138 prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~----~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R 213 (1281)
T KOG4222|consen 138 PRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY----DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER 213 (1281)
T ss_pred cccccccccceeEEeccCCCCCCCCcceeecCCCccccc----cceeEEEecCCcEEEeccccCCCceeeeeeccccccc
Confidence 44577889999999998 5677899999999988843 1222233457777677667777999999999987664
Q ss_pred c---------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeee
Q psy15235 105 A---------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKT 173 (323)
Q Consensus 105 ~---------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~ 173 (323)
. ..+.+...+....+..|..+.+.|.+.|.| .+++.|.+++..+.. .++. ..+.++.|.++
T Consensus 214 eS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP---~P~Vrwkk~~~~~P~-----~ry~i~~d~qtl~i~r~ 285 (1281)
T KOG4222|consen 214 ESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP---QPTVRWKKDDPSLPR-----SRYSILDDTQTLRIDRV 285 (1281)
T ss_pred ccccceeeeccCCccccccccceeecccccccccccCCCC---CCceeeeccCCCCCc-----cceeeeecccccccccc
Confidence 1 122333366666788899999999999999 899999998777764 4443 55689999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-----
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF----- 247 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~----- 247 (323)
+..|.|.|.|.+ .|.. +.......++|+.+|... .+....+..|..++|.|.+.|+|+|.+.|.+.+....
T Consensus 286 tp~deg~y~C~a-~n~v--G~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~ 362 (1281)
T KOG4222|consen 286 TPTDEGTYVCPA-ENLV--GGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSAS 362 (1281)
T ss_pred CCCcccceeeec-cccc--cccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCC
Confidence 999999999999 7884 446778889999988665 5556778889999999999999999999999876422
Q ss_pred --ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 248 --RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
..+.+..+. ...+|+|.+++..|.|.|.|...+..|.+
T Consensus 363 p~~~~~r~svs-------~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 363 PPSSNGRGSVS-------PTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred CCCcCccceec-------CCCCcccccccccccceEeeccccccccc
Confidence 123344444 45699999999999999999999888763
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=1e-20 Score=146.76 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=111.2
Q ss_pred eEEecCCcEEEEEEeecCCC--------CCCceEEEEECCeecccc---cc------ccCcEEeceeEEEEeeeecCCCe
Q psy15235 117 KVFEYRVPFTLKCNVTSPPP--------GDDYQIVWYKGNKSITEA---TE------LSGRLTQSKDSITIRKTTVDDAG 179 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~--------~~~~~i~W~~~~~~~~~~---~~------~~~~~~~~~~~l~i~~~~~~d~G 179 (323)
..+.+|+++.|.|.+.+.++ ...+++.|+|++...... .. ...++......|.|.+++.+|+|
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 44678999999999866431 115699999987542110 00 00111123568999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe-----cCCCCcEEEEECCeeeeccCCeee
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-----GSPPPTVEWRIGNDTYFRSQGRIK 254 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~~~W~~~~~~~~~~~~~~~ 254 (323)
.|.|.+ .|.. ......+.|.|..++ ....+.+|+.+.|.|.+. +.|.|++.|++++..+... .++.
T Consensus 112 ~Y~C~a-~N~~--~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-~r~~ 182 (227)
T PHA02826 112 IYICTI-SSGN--ICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-DRIQ 182 (227)
T ss_pred EEEEEE-EECC--cceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-CCEE
Confidence 999999 6653 234455555553322 234567899999999985 3457899999999988633 4555
Q ss_pred eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+.. ...+|.|.+++.+|+|.|+|.|....
T Consensus 183 ~~~------~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 183 LRN------NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EeC------CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 441 24689999999999999999999976
No 10
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=7.8e-21 Score=147.47 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=102.8
Q ss_pred eeceEEecCCcEEEEEEec-------------cCceEEEEEcCccceeeccCcc---eEEEeee-eCCeEEEEEeec--c
Q psy15235 28 FGDTEIMEGAPINISCILT-------------IFEQVKWQLNGRNINQSSVDSG---FAATANL-TEDNFKYSIHEA--I 88 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-------------~~~~v~W~~~g~~~~~~~~~~~---~~~~~~~-~~~~~~l~i~~~--~ 88 (323)
..++.+.+|++|.|.|.+. ....+.|+|++...--.....+ .....+. ......|.|.++ .
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4668899999999999952 2358999998653211100000 0000010 111234555555 4
Q ss_pred cCcceEEEeeccCCccceeeeeee--CCceeEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccccccccCcEE--
Q psy15235 89 LESGYVQSSLFIPRMNAITGNYDI--EPKYKVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITEATELSGRLT-- 162 (323)
Q Consensus 89 ~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~~-- 162 (323)
|+|.|+|.+.+..+.......+.+ .+....+.+|+.+.|.|.+.+.++ ...++|+|+|+|.++.. ..++.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~ 184 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLR 184 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEe
Confidence 599999999997766555555544 233344678999999999864321 00579999999999876 45554
Q ss_pred eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.....|.|.+++.+|+|.|+|.++
T Consensus 185 ~~~~~L~I~~V~~~DsG~YtC~a~ 208 (227)
T PHA02826 185 NNNSTLVIKSATHDDSGIYTCNLR 208 (227)
T ss_pred CCCCEEEECcCCHHhCEEEEEEEE
Confidence 345689999999999999999994
No 11
>KOG4194|consensus
Probab=99.84 E-value=4.8e-20 Score=154.45 Aligned_cols=188 Identities=23% Similarity=0.384 Sum_probs=142.4
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE---eceeEEEEeeeecCCCe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT---QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~---~~~~~l~i~~~~~~d~G 179 (323)
.|....+-.|+.++++|.+.+.... +.++.|.+|+..... +....+.+. .....|.+.+++-.|+|
T Consensus 509 qPe~~~al~g~nirftC~a~sssas-plsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g 587 (873)
T KOG4194|consen 509 QPETVSALIGENIRFTCNAYSSSAS-PLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG 587 (873)
T ss_pred CchHhhhhhccceEEEEEeccCCCC-CceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence 4444446679999999999773322 679999998763322 000001111 34567899999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee-eec-cCCeeeee
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT-YFR-SQGRIKLS 256 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-~~~-~~~~~~~~ 256 (323)
.|.|.+ +|..|. ..+..+.++|...|... .|.+.+...|+.+.|.|.+.|.|.|++.|.++|.. +.. ...|.++.
T Consensus 588 rYQCVv-tN~FGS-tysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm 665 (873)
T KOG4194|consen 588 RYQCVV-TNHFGS-TYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM 665 (873)
T ss_pred eEEEEE-ecccCc-chhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence 999999 677544 46677888888877655 77788999999999999999999999999998876 443 23455555
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
+ ..-.+.|.+++.+|.|.|+|.|.|.+|. .++..+|.|-+.|....+
T Consensus 666 --p----edd~f~Itnvk~eD~GiYtC~A~n~AG~----isanAtL~V~e~p~f~~P 712 (873)
T KOG4194|consen 666 --P----EDDVFFITNVKIEDQGIYTCTAQNVAGQ----ISANATLTVLETPSFSIP 712 (873)
T ss_pred --C----CCCEEEEecccccccceeEEeeeccccc----eeeceEEEEecCCccccc
Confidence 2 3567889999999999999999999976 888888999888776544
No 12
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.78 E-value=5.3e-18 Score=140.21 Aligned_cols=166 Identities=15% Similarity=0.244 Sum_probs=113.1
Q ss_pred EecCCcEEEEEEe-----ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 119 FEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 119 ~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.+|+.+.|.|.+ .+.+ .+++.|+|+|..... ... .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~------~~~~~~g~~l~i~~~~~~DsG~Y~C~a-~N~~g~ 107 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDR------IIPIDNGSNMLILNPTQSDSGIYICIT-KNETYC 107 (326)
T ss_pred hhcCCCEEEECCCccccccCCC---CceEEEEECCCccce------EEEccCCceEEEcccCcccCeEEEEEE-ECCCcc
Confidence 4469999999987 5666 689999998743211 111 23345789999999999999999 677433
Q ss_pred CCCceeeeeEEEec--ceee-eeceeEEeeCCeEEEEEEE-----ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235 193 TTPLAQADFDVIMK--PTAK-LVETLTVIEGEKLRLECLV-----VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264 (323)
Q Consensus 193 ~~~~~~~~l~v~~~--p~~~-~~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
...++.|+|... +.+. ......+.+|..+.|.|.. .++|++.+.|+++.. + ...++... .
T Consensus 108 --~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~--~~~r~~~~-------~ 175 (326)
T PHA02785 108 --DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L--RNKRLKQR-------T 175 (326)
T ss_pred --eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c--CCcceEec-------C
Confidence 445666666543 2222 2223456689999999972 457889999987642 2 22344333 2
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.+.|.|.+++.+|.|.|+|.|.|..|.........+.|.|..
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~ 217 (326)
T PHA02785 176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD 217 (326)
T ss_pred CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec
Confidence 568999999999999999999999865211223455566643
No 13
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.73 E-value=8.7e-17 Score=106.44 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=71.1
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
|+.++|.|.+.|.|++.+.|++++..+.....++.+.....+....++|.|.++..+|+|.|+|.|.|..|. ....
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~----~~~~ 76 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE----DRGI 76 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc----ceEE
Confidence 789999999999999999999999887544445555422223334588999999999999999999999966 8889
Q ss_pred EEEEEcceecC
Q psy15235 300 VYVRVKGKSFG 310 (323)
Q Consensus 300 ~~l~v~~~~~~ 310 (323)
+.|.|.++|.+
T Consensus 77 ~~L~V~~~P~~ 87 (88)
T cd05735 77 IQLTVQEPPDP 87 (88)
T ss_pred EEEEEeCCCCC
Confidence 99999888764
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=1.5e-16 Score=107.42 Aligned_cols=92 Identities=26% Similarity=0.295 Sum_probs=76.6
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+..|+.+.|.|.+.|.|++.+.|++++..+... .++.+.. .. ..+.|+|.++..+|+|.|+|.|.|..|
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~--~~--~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIEN--TE--NSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEe--cC--CeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 455677899999999999999999999999999998643 3444431 11 367899999999999999999999996
Q ss_pred CCCCCceeEEEEEEcceecCc
Q psy15235 291 RNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~~~ 311 (323)
. ..+.+.|.|.++|.+.
T Consensus 81 ~----~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 S----RQAQVNLTVVDKPDPP 97 (98)
T ss_pred c----eeEEEEEEEecCCCCC
Confidence 6 8889999999888653
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.70 E-value=5.2e-16 Score=102.16 Aligned_cols=83 Identities=33% Similarity=0.604 Sum_probs=68.7
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
...+..|+.+.|.|.+.|.|.|.+.|++++..+.....++.+... . ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~--~--~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-- 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY--K--DLSSFVIEGAEREDEGVYTITVTNPVGE-- 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc--C--CeEEEEECCCccCcCEEEEEEEEeCCCc--
Confidence 356788999999999999999999999999988755556655421 1 3578999999999999999999999966
Q ss_pred CCceeEEEEEE
Q psy15235 294 QPNEAFVYVRV 304 (323)
Q Consensus 294 ~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 78 --~~~~~~l~V 86 (86)
T cd05894 78 --DHASLFVKV 86 (86)
T ss_pred --EEEEEEEEC
Confidence 777777764
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.69 E-value=5.4e-16 Score=104.79 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=68.2
Q ss_pred eeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 214 TLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
...+.+|+++.|.|.+.| .|+|.+.|+|||..+..............+....+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~- 90 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS- 90 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc-
Confidence 466788999999999999 788999999999988643332222210011123588999999999999999999999966
Q ss_pred CCCceeEEEEEEc
Q psy15235 293 SQPNEAFVYVRVK 305 (323)
Q Consensus 293 ~~~~~~~~~l~v~ 305 (323)
....+.|.|.
T Consensus 91 ---~~~t~~L~V~ 100 (101)
T cd04975 91 ---KSLTFELYVN 100 (101)
T ss_pred ---EEEEEEEEEE
Confidence 7788888775
No 17
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.68 E-value=5.1e-16 Score=107.07 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=69.3
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccCCCCCce
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNE 297 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~ 297 (323)
.|..+.|.|.+.|.|.+.+.|++++..+...+.++.+..........+.|+|.++. .+|.|.|+|.|.|..|. ..
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~----~~ 97 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE----DS 97 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc----Cc
Confidence 46889999999999999999999999886555555443222222335789999997 58999999999999966 88
Q ss_pred eEEEEEEccee
Q psy15235 298 AFVYVRVKGKS 308 (323)
Q Consensus 298 ~~~~l~v~~~~ 308 (323)
..+.|.|.+.|
T Consensus 98 ~~i~L~~~~~p 108 (109)
T cd05773 98 LDIQLVSTSRP 108 (109)
T ss_pred EEEEEEecCCC
Confidence 99999998876
No 18
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.68 E-value=7.4e-16 Score=102.06 Aligned_cols=82 Identities=24% Similarity=0.518 Sum_probs=66.5
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+... .++.. .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-AEISM--------SGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-CEEec--------CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 344667889999999999999999999999998776432 22222 246899999999999999999999996
Q ss_pred CCCCCceeEEEEEEc
Q psy15235 291 RNSQPNEAFVYVRVK 305 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~ 305 (323)
. ....+.|.|+
T Consensus 78 ~----~~~~~~l~V~ 88 (88)
T cd05851 78 K----DKHQARVYVQ 88 (88)
T ss_pred c----eEEEEEEEEC
Confidence 6 7777777764
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.67 E-value=4.3e-16 Score=99.87 Aligned_cols=74 Identities=23% Similarity=0.510 Sum_probs=61.5
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
+|+.+.|.|.+.|+|.|.+.|++++..+... .+..+. ...+|.|.+++.+|.|.|+|.|.|..|. ...
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~ 68 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-RRHLVL-------SSGTLRISRVALHDQGQYECQAVNIVGS----QRT 68 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC-CCeEEc-------cCCeEEEeeCCHHhCEEEEEEEEeCCCc----eeE
Confidence 5899999999999999999999999887543 333333 3568999999999999999999999966 777
Q ss_pred EEEEEE
Q psy15235 299 FVYVRV 304 (323)
Q Consensus 299 ~~~l~v 304 (323)
.+.|.|
T Consensus 69 ~~~L~V 74 (74)
T cd05745 69 VAQLTV 74 (74)
T ss_pred EEEEeC
Confidence 777754
No 20
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=5.9e-16 Score=98.63 Aligned_cols=75 Identities=25% Similarity=0.444 Sum_probs=60.6
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|.|.+.|++++..+.....++.+.. .+. ...+|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~--~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G~----~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ--DNS-GRVTLLIKNVNKKDAGWYTVSAVNEAGV----ATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE--cCC-CcEEEEECCCChhhCEEEEEEEEcCcCe----EEEEEEE
Confidence 47999999999999999999998875555666542 111 1358999999999999999999999966 7777777
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.|
T Consensus 74 ~V 75 (75)
T cd05892 74 DV 75 (75)
T ss_pred eC
Confidence 64
No 21
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.66 E-value=1.2e-15 Score=103.13 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=68.3
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
+..+..|+.+.|.|.+.|.|.|.+.|+++|..+.....++.... ..+.|+|.+++.+|.|.|+|.|.|..|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-- 83 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE------DGSEMTILDVDKLDEAEYTCIAENKAGE-- 83 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC------CCCEEEECCCChhhCEEEEEEEEcCCCe--
Confidence 45678899999999999999999999999988765434444331 3467999999999999999999999966
Q ss_pred CCceeEEEEEEcc
Q psy15235 294 QPNEAFVYVRVKG 306 (323)
Q Consensus 294 ~~~~~~~~l~v~~ 306 (323)
....+.|.|..
T Consensus 84 --~~~~~~L~V~~ 94 (95)
T cd05730 84 --QEAEIHLKVFA 94 (95)
T ss_pred --EEEEEEEEEEe
Confidence 77888887754
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.65 E-value=3.2e-15 Score=100.20 Aligned_cols=86 Identities=29% Similarity=0.451 Sum_probs=67.6
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
++....+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+.. ..+ ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKV--EQG-KYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEE--cCC-CEEEEEEccCChhhCEEEEEEEEECCC
Confidence 445567889999999999999999999999999888643 3333331 111 246799999999999999999999996
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....+.|.|
T Consensus 83 ~----~~~~~~v~v 92 (92)
T cd05737 83 G----ETVDVTVSV 92 (92)
T ss_pred c----ceEEEEEeC
Confidence 6 777777654
No 23
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=1.1e-15 Score=97.48 Aligned_cols=75 Identities=28% Similarity=0.452 Sum_probs=60.2
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|.|.+.|++++..+.....++.+.. .+. ...+|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ--DNC-GYICLLIQGATKEDAGWYTVSAKNEAGI----VSCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE--cCC-CEEEEEECCCCHHHCEEEEEEEEcCCCE----EEEEEEE
Confidence 47999999999999999999998875556666542 111 1247999999999999999999999966 7777777
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 64
No 24
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=1.5e-15 Score=96.42 Aligned_cols=73 Identities=25% Similarity=0.494 Sum_probs=61.3
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+. ....|.|.+++.+|.|.|+|.|.|..|. ....
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~-~~r~~~~-------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~~ 68 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN-NSRISIW-------DDGSLEILNITKLDEGSYTCFAENNRGK----ANST 68 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc-CCCEEEc-------CCCEEEECcCChhHCEEEEEEEECCCCc----eeEE
Confidence 67899999999999999999999987653 3566654 3568999999999999999999999966 7777
Q ss_pred EEEEE
Q psy15235 300 VYVRV 304 (323)
Q Consensus 300 ~~l~v 304 (323)
+.|.|
T Consensus 69 ~~l~~ 73 (73)
T cd05852 69 GVLSV 73 (73)
T ss_pred EEEEC
Confidence 76654
No 25
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=6.2e-15 Score=100.04 Aligned_cols=91 Identities=23% Similarity=0.531 Sum_probs=68.9
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeeec----cCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYFR----SQGRIKLSEHPEKGTANSVLQIDEATMADRG 279 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 279 (323)
+|.+..+.+..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. .+.++.+.. . .....|+|.+++.+|+|
T Consensus 2 ~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~--~--~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG--Q--HGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--c--CCeeEEEEeeCCcCCCE
Confidence 4556666678899999999999999999999999994 333321 123444431 1 12468999999999999
Q ss_pred EEEEEEeecccCCCCCceeEEEEEE
Q psy15235 280 NYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 280 ~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.|+|.|.|..|. ...+++|.|
T Consensus 78 ~Y~C~A~N~~G~----~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGG----HQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCc----ceeEEEEeC
Confidence 999999999966 667777754
No 26
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.63 E-value=3.4e-15 Score=101.25 Aligned_cols=91 Identities=26% Similarity=0.548 Sum_probs=70.3
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 281 (323)
+|.+....+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+. . ....+.|+|.+++.+|+|.|
T Consensus 2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--G--HARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred CccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe--C--CccEEEEEECcCCcCcCEEe
Confidence 46666556778899999999999999999999999988655422 1233332 1 11357899999999999999
Q ss_pred EEEEeecccCCCCCceeEEEEEE
Q psy15235 282 YCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 282 ~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
+|.|.|..|. ...+++|.|
T Consensus 78 ~C~a~N~~G~----~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGG----DQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCC----cEEEEEEeC
Confidence 9999999966 777777764
No 27
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.63 E-value=2.8e-15 Score=96.70 Aligned_cols=76 Identities=24% Similarity=0.417 Sum_probs=60.0
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
++|.|.+.|.|.|.+.|+++|..+.....++.+.. ....|.|.++..+|+|.|.|.|.|..|. ......++|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS------KERTLTLRSAGPDDSGLYYCCAHNAFGS--VCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC------CCCEEEEeeCCcccCEEEEEEEEeCCCe--EeeCceEEE
Confidence 47999999999999999999998865544444431 2468999999999999999999999976 223556777
Q ss_pred EEcc
Q psy15235 303 RVKG 306 (323)
Q Consensus 303 ~v~~ 306 (323)
.|.+
T Consensus 73 ~v~d 76 (77)
T cd05760 73 SIID 76 (77)
T ss_pred EEec
Confidence 7654
No 28
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=4.2e-15 Score=95.78 Aligned_cols=73 Identities=29% Similarity=0.479 Sum_probs=60.8
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccC--CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ--GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~ 297 (323)
|+++.|.|.+.|.|.|.+.|+++|..+.... .++... ...|.|.+++.+|+|.|+|.|.|..|. ..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~ 68 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--------SGALILTDVQPSDTAVYQCEARNRHGN----LL 68 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--------CCEEEECCCChhhCEEEEEEEECCCCe----EE
Confidence 6889999999999999999999998875432 233322 568999999999999999999999966 77
Q ss_pred eEEEEEE
Q psy15235 298 AFVYVRV 304 (323)
Q Consensus 298 ~~~~l~v 304 (323)
..++|.|
T Consensus 69 ~~~~l~V 75 (76)
T cd05867 69 ANAHVHV 75 (76)
T ss_pred EEEEEEE
Confidence 7888776
No 29
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.62 E-value=2.9e-15 Score=92.72 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=53.7
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
++|.|.+.|+|+|.+.|++||..+.... ..+.|.|.++..+|+|.|+|.|.|..|. .+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~----~~~~~~~ 63 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAG----LEKRISL 63 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCcc----EEEEEEE
Confidence 4799999999999999999999885210 3578999999999999999999999965 5555555
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.+
T Consensus 64 ~l 65 (67)
T cd05863 64 EL 65 (67)
T ss_pred EE
Confidence 44
No 30
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.62 E-value=5.9e-15 Score=99.92 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=67.6
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC-CCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH-PEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
...+..|+.+.|.|.+.|+|+|.+.|+++|.++............ .......++|+|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~- 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV- 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence 456778999999999999999999999999998754332222110 001123578999999999999999999999965
Q ss_pred CCCceeEEEEEEc
Q psy15235 293 SQPNEAFVYVRVK 305 (323)
Q Consensus 293 ~~~~~~~~~l~v~ 305 (323)
.+.++.|.|.
T Consensus 91 ---~~~t~~l~V~ 100 (101)
T cd05859 91 ---KSYTFALQIQ 100 (101)
T ss_pred ---EEEEEEEEEE
Confidence 7777777764
No 31
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.62 E-value=6.1e-15 Score=98.84 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=65.4
Q ss_pred eceeEEeeCCeEEEEEEEecCCC-CcEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPP-PTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|....+..|+++.|.|.+.|.|. |.+.|++ ++..+.....++.+.. . ....++|+|.+++.+|+|.|+|.|.|..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~--~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR--N-DDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--C-CCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 33456788999999999999985 6999998 6766654344554431 1 1125789999999999999999999997
Q ss_pred -cCCCCCceeEEEEEE
Q psy15235 290 -TRNSQPNEAFVYVRV 304 (323)
Q Consensus 290 -g~~~~~~~~~~~l~v 304 (323)
|. ..+++.|.|
T Consensus 84 ~g~----~~~s~~l~v 95 (96)
T cd05865 84 EGE----SEATVNVKI 95 (96)
T ss_pred CCc----EEEEEEEEE
Confidence 44 777777765
No 32
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.61 E-value=5.7e-15 Score=94.92 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=59.8
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
|+.+.|.|.+.|+|.|++.|+++|..+...... .... ....|.|.+++.+|.|.|+|.|.|..|. ..+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~----~~~ 69 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-------DGDTIIFSKVQERSSAVYQCNASNEYGY----LLA 69 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-------cCCEEEECCCCHhhCEEEEEEEEcCCCE----EEE
Confidence 678999999999999999999999887532211 1111 2457999999999999999999999966 778
Q ss_pred EEEEEE
Q psy15235 299 FVYVRV 304 (323)
Q Consensus 299 ~~~l~v 304 (323)
.++|.|
T Consensus 70 ~~~l~v 75 (76)
T cd05868 70 NAFVNV 75 (76)
T ss_pred EEEEEe
Confidence 888776
No 33
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.61 E-value=1.3e-14 Score=98.28 Aligned_cols=91 Identities=26% Similarity=0.503 Sum_probs=66.9
Q ss_pred cceeeeeceeE-EeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235 206 KPTAKLVETLT-VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGN 280 (323)
Q Consensus 206 ~p~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 280 (323)
+|.|...++.. +..|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+.. ....+.|.|.+++.+|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~----~~~~~~L~I~~v~~~D~G~ 77 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS----HARVSSLTLKYIQYTDAGE 77 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc----CccEEEEEEecCccCcCEE
Confidence 45555334333 445899999999999999999999988765422 12232221 1124789999999999999
Q ss_pred EEEEEeecccCCCCCceeEEEEEE
Q psy15235 281 YYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 281 y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|+|.|.|..|. ...+++|.|
T Consensus 78 Y~C~A~N~~G~----~~~~~~l~v 97 (97)
T cd05869 78 YLCTASNTIGQ----DSQSMYLEV 97 (97)
T ss_pred EEEEEecCCCC----eeEEEEEEC
Confidence 99999999966 778888765
No 34
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=7e-15 Score=96.88 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=67.0
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.|.+..+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..++... ...|.|.++..+|+|.|+|.|.|..|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~-~~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS-ENRIEVE--------AGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC-CCeEEEe--------CCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 34566788999999999999999999999999998753 3444444 56899999999999999999999996
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ...++.|.|
T Consensus 76 ~----~~~~~~l~V 85 (85)
T cd05728 76 T----IYASAELAV 85 (85)
T ss_pred e----EEEEEEEEC
Confidence 5 777777654
No 35
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=8.3e-15 Score=92.93 Aligned_cols=71 Identities=28% Similarity=0.444 Sum_probs=58.3
Q ss_pred eEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 222 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++.|.|.+.|.|.|.+.|++++..+... .++.+. ....|.|.++..+|+|.|+|.|.|..|. ...++.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~----~~~~~~ 68 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-DYFKIV-------KEHNLQVLGLVKSDEGFYQCIAENDVGN----VQASAQ 68 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC-CCEEEE-------ecCCEEEEcCCcccCEEEEEEEEcCCCE----EEEEEE
Confidence 4789999999999999999999887543 344444 2456889999999999999999999966 777777
Q ss_pred EEE
Q psy15235 302 VRV 304 (323)
Q Consensus 302 l~v 304 (323)
|.|
T Consensus 69 L~V 71 (71)
T cd05723 69 LII 71 (71)
T ss_pred EEC
Confidence 764
No 36
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.60 E-value=1.4e-14 Score=98.23 Aligned_cols=93 Identities=26% Similarity=0.480 Sum_probs=70.7
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcCC-CeEEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYY 282 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~ 282 (323)
+|.+..+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ..++.+..........++|+|.++..+| .|.|+
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~ 81 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN 81 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence 456655556678899999999999999999 59999999887643 3566555322222235789999999955 89999
Q ss_pred EEEeecccCCCCCceeEEEE
Q psy15235 283 CHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l 302 (323)
|.|.|..|. ....+.|
T Consensus 82 C~A~N~~G~----~~~~~~L 97 (98)
T cd05758 82 CTAWNSFGS----GTAIISL 97 (98)
T ss_pred EEEEcCCCc----ccEEEEe
Confidence 999999976 6666665
No 37
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.60 E-value=1.1e-14 Score=93.22 Aligned_cols=75 Identities=29% Similarity=0.445 Sum_probs=59.3
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|.|.+.|++++..+.....++.+.. .. ....+|.|.+++.+|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~--~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ--DN-CGRICLLIQNANKEDAGWYTVSAVNEAGV----VSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE--cC-CCeEEEEECCCCcccCEEEEEEEEcCCCc----EEEEEEE
Confidence 47999999999999999999988865445555431 11 12347999999999999999999999966 7777776
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.|
T Consensus 74 ~v 75 (75)
T cd05744 74 DV 75 (75)
T ss_pred eC
Confidence 54
No 38
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.60 E-value=2e-14 Score=95.91 Aligned_cols=84 Identities=25% Similarity=0.363 Sum_probs=65.5
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+...... ... .......|.|.++..+|.|.|+|.|.|..|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~-~~~----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTD-TLE----TTVDIYNLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccE-EEE----ecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence 33455889999999999999999999999999877543221 111 1113578999999999999999999999965
Q ss_pred CCCCceeEEEEEE
Q psy15235 292 NSQPNEAFVYVRV 304 (323)
Q Consensus 292 ~~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 82 ----~~~~~~L~v 90 (90)
T cd04972 82 ----ANVSVQVTV 90 (90)
T ss_pred ----eeEEEEEeC
Confidence 777777654
No 39
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=6.2e-15 Score=93.51 Aligned_cols=71 Identities=31% Similarity=0.549 Sum_probs=57.0
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|+|.|.+.|++++..+...... ... ...+|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~-~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTK-KLN-------NNKTLQLDNVLESDDGEYVCTAENSEGS----ARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCcee-EEc-------CCCEEEEcccCHHhCEEEEEEEEcCCCe----EEEEEEE
Confidence 468999999999999999998876432211 111 3678999999999999999999999966 7788887
Q ss_pred EEc
Q psy15235 303 RVK 305 (323)
Q Consensus 303 ~v~ 305 (323)
.|.
T Consensus 69 ~Ve 71 (71)
T cd05876 69 TVE 71 (71)
T ss_pred EEC
Confidence 763
No 40
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.59 E-value=1.3e-14 Score=96.40 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=63.5
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
+..+.+|++++|.|.+.|. .|.+.|++++..+.. .+..+.. ...+|+|.+++.+|.|.|+|.|.|..|.
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-- 80 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--PRLQLSN------DNRTLTFNNVTRSDTGHYQCEASNEVSN-- 80 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC--CCEEEeC------CCCEEEECcCChhhCEEEEEEEEcCCCC--
Confidence 4578899999999999999 999999999988753 2333331 2468999999999999999999999975
Q ss_pred CCceeEEEEEE
Q psy15235 294 QPNEAFVYVRV 304 (323)
Q Consensus 294 ~~~~~~~~l~v 304 (323)
..+..+.|.|
T Consensus 81 -~~S~~~~L~V 90 (91)
T cd05740 81 -MTSDPYILNV 90 (91)
T ss_pred -EEeeeEEEEe
Confidence 2445666666
No 41
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=2.3e-14 Score=95.74 Aligned_cols=86 Identities=29% Similarity=0.425 Sum_probs=67.1
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.|....+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.... . .+ ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~-~-~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKL-E-QG-KYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEE-c-CC-CEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 345667889999999999999999999999999887543 3333321 1 11 135799999999999999999999996
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....+.|+|
T Consensus 83 ~----~~~~~~v~~ 92 (92)
T cd05891 83 G----ETVDVTVSV 92 (92)
T ss_pred c----eeeEEEEEC
Confidence 6 777777764
No 42
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.59 E-value=1.3e-14 Score=93.74 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=60.8
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
|+.+.|.|.+.|+|.|.+.|++++..+.......... .....|.|.+++.+|+|.|+|.|.|..|. ..+.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~ 70 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRR------VDGGTLILSNVQPNDTAVYQCNASNVHGY----LLAN 70 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEE------ccCCEEEECCCChhhCEEEEEEEEccCCe----EEEe
Confidence 6889999999999999999999998876433221111 13578999999999999999999999966 7777
Q ss_pred EEEEE
Q psy15235 300 VYVRV 304 (323)
Q Consensus 300 ~~l~v 304 (323)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd04978 71 AFVHV 75 (76)
T ss_pred EEEEE
Confidence 77776
No 43
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=2.2e-14 Score=95.37 Aligned_cols=81 Identities=25% Similarity=0.568 Sum_probs=65.4
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+... ..... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-AEISM--------SGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-cEEEE--------eCCEEEECCCCcccCEEEEEEEEECCC
Confidence 445667889999999999999999999999988765432 22221 357899999999999999999999997
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ......|.|
T Consensus 78 ~----~~~~~~l~V 87 (88)
T cd04968 78 K----DTHQGRIYV 87 (88)
T ss_pred c----EEEEEEEEE
Confidence 6 677777766
No 44
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=1.3e-14 Score=92.77 Aligned_cols=73 Identities=26% Similarity=0.499 Sum_probs=60.9
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+. ....|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~----~~~~ 68 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTN-SSRICIW-------PDGSLEILNVTKSDEGKYTCFAENFFGK----ANST 68 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEccc-CCCEEEC-------CCCeEEEccCChhHCEEEEEEEECCCCc----eEEE
Confidence 67899999999999999999999988753 3445444 2467999999999999999999999966 7777
Q ss_pred EEEEE
Q psy15235 300 VYVRV 304 (323)
Q Consensus 300 ~~l~v 304 (323)
+.|.|
T Consensus 69 ~~l~V 73 (73)
T cd04969 69 GSLSV 73 (73)
T ss_pred EEEEC
Confidence 77764
No 45
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=1.8e-14 Score=96.18 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=64.5
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
|+.+.|.|.+.|+|.|.+.|++++..+. ....++.+. ....|+|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~- 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS-------QTGDLTITNVQRSDVGYYICQTLNVAGS- 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC-------CCCeEEEeeCChhhCEEEEEEEEcCCCc-
Confidence 6889999999999999999999886531 123344443 2467999999999999999999999966
Q ss_pred CCCceeEEEEEEcceecC
Q psy15235 293 SQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 293 ~~~~~~~~~l~v~~~~~~ 310 (323)
....+.|.|.+....
T Consensus 73 ---~~~~~~l~V~~~~~~ 87 (90)
T cd05726 73 ---ILTKAYLEVTDVIAD 87 (90)
T ss_pred ---eEEEEEEEEeecccC
Confidence 888899999876543
No 46
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=4.5e-14 Score=94.55 Aligned_cols=85 Identities=34% Similarity=0.545 Sum_probs=70.3
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. ..++.+.... ...+|.|.++..+|.|.|+|.|.|..|
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDG----GSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEET----TEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeeccc----ceeEEccCCCChhhCEEEEEEEEECCC
Confidence 44567889999999999999999999999999998875 3444443211 578999999999999999999999996
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....+.|.|
T Consensus 81 ~----~~~~~~l~V 90 (90)
T PF07679_consen 81 E----ATASVNLTV 90 (90)
T ss_dssp E----EEEEEEEEE
T ss_pred E----EEEEEEEEC
Confidence 6 777777765
No 47
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.58 E-value=1.7e-14 Score=92.15 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=54.6
Q ss_pred EEEEEecCCCCcEEEEECCeeeeccCCee-eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 225 l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
|.|.+.|+|.|+++|++||..+..+.... .+.. .......+.|.|.++..+|+|.|+|.|.|..|. ...++.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~----~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHV-INNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE----DEKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEe-ecccceEEEEEECCCCcccCEEEEEEEEcCCcc----cceEEEe
Confidence 67999999999999999999987443211 1110 111123578999999999999999999999976 6666554
No 48
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.58 E-value=1.3e-14 Score=94.05 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=62.7
Q ss_pred CeEEEEEEEecC--CCCcEEEEECCeeeec--cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 221 EKLRLECLVVGS--PPPTVEWRIGNDTYFR--SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 221 ~~~~l~C~~~g~--p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
+++.|.|.+.+. +++.+.|++||..+.. ...++.... +....+.|+|.+++.+|+|+|+|.|.|..+. .
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~---~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~----~ 73 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG---GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK----L 73 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec---cCCCCCcEEEecCCHHHCEEEEEEEEcccCc----e
Confidence 468999999764 5778999999999862 333443320 0012568999999999999999999999955 8
Q ss_pred eeEEEEEEccee
Q psy15235 297 EAFVYVRVKGKS 308 (323)
Q Consensus 297 ~~~~~l~v~~~~ 308 (323)
.++..|.|.++|
T Consensus 74 ~a~a~L~V~~pP 85 (85)
T cd05853 74 SAAADLIVRGPP 85 (85)
T ss_pred EEEEEEEEecCC
Confidence 888899888776
No 49
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=7.3e-15 Score=92.13 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=53.6
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|+|.|.+.|++||..+... .++ . ....|.|.++..+|+|.|+|.|.|..|. ......+.|
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~N~~G~--~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTF--K-------RGVHLTIYEVTEKDAGNYTVVLTNPITK--EEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-CEE--c-------cCCEEEECcCCHHHCEEEEEEEEECCCc--eeeEEEEEE
Confidence 468999999999999999999988533 221 2 2467999999999999999999999976 234444444
No 50
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.58 E-value=3e-14 Score=91.39 Aligned_cols=74 Identities=30% Similarity=0.492 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 222 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++.|.|.+.|.|.|.+.|+++|..+.. ..++.+.. . .....|.|.++..+|+|.|+|.|.|..|. .+..+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~-~~~~~~~~--~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~ 71 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL-SGRVQIET--T--ASSTSLVIKNAERSDSGKYTLTLKNPAGE----KSATIN 71 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC-CCeEEEEE--C--CCeEEEEECCCCcCcCEEEEEEEECCCcc----EEEEEE
Confidence 378999999999999999999998743 34444431 1 13688999999999999999999999966 777777
Q ss_pred EEE
Q psy15235 302 VRV 304 (323)
Q Consensus 302 l~v 304 (323)
|.|
T Consensus 72 l~V 74 (74)
T cd05748 72 VKV 74 (74)
T ss_pred EEC
Confidence 764
No 51
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.57 E-value=1.1e-14 Score=91.44 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=55.0
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|+|++.|++++..+.....++... ..+|.|.+++.+|+|.|+|.|.|..+. ......++|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~~~~~~--~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVD--------GYSLVIKDVTEEDAGIYTILLGIKQYN--LFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeC--------CCEEEECcCCHHHCEEEEEEEEccccc--eEeeEEEEE
Confidence 4689999999999999999998876543444332 457999999999999999999998654 234444444
Q ss_pred E
Q psy15235 303 R 303 (323)
Q Consensus 303 ~ 303 (323)
.
T Consensus 71 ~ 71 (72)
T cd07702 71 I 71 (72)
T ss_pred E
Confidence 3
No 52
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.57 E-value=1.6e-14 Score=91.48 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=55.6
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|+|.+.|+++|..+... .+... ...+|.|.++..+|+|.|+|.|.|..|. ....+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-~~~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~~g~----~~~~~~~ 67 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK-NRTKK--------SGHSLTIKDVTEEDAGNYTVVLTNKQAK----LEKRLTF 67 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-CEEEc--------CCCEEEECcCCHHHCEEEEEEEEcCCcc----EEEEEEE
Confidence 468999999999999999999988644 33332 2578999999999999999999999965 5555555
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.+
T Consensus 68 ~~ 69 (71)
T cd04976 68 TL 69 (71)
T ss_pred EE
Confidence 44
No 53
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=3.3e-14 Score=93.34 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=62.2
Q ss_pred CeEEEEEEEecCCCC--cEEEEECCeeeecc--CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 221 EKLRLECLVVGSPPP--TVEWRIGNDTYFRS--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 221 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
+.+.|.|.+.|+|.| .+.|++++..+... ..++.... . ....+.|+|.+++.+|+|.|+|.|.|..|. .
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~----~ 73 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-V--KETIGDLVIVNAQLSHAGTYTCTAQTVVDS----A 73 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-e--cceEeEEEEccCChhhCeEEEEEEecCCCC----E
Confidence 468999999999887 58999999887542 22221110 0 012478999999999999999999999965 8
Q ss_pred eeEEEEEEccee
Q psy15235 297 EAFVYVRVKGKS 308 (323)
Q Consensus 297 ~~~~~l~v~~~~ 308 (323)
.+++.|.|.++|
T Consensus 74 ~~~~~L~V~~~P 85 (85)
T cd05854 74 SASATLVVRGPP 85 (85)
T ss_pred EEEEEEEEECCC
Confidence 889999998765
No 54
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.57 E-value=3.7e-14 Score=94.05 Aligned_cols=72 Identities=32% Similarity=0.539 Sum_probs=61.2
Q ss_pred ceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 213 ETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
....+.+|+++.|.|.+ .|.|.|.+.|++++..+.....++.+. ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-------DDGNLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc-------cCCEEEEeECCcccCEEEEEEEEeccCc
Confidence 45677899999999998 789999999999998876555555544 2568999999999999999999999976
No 55
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.56 E-value=6.8e-14 Score=93.77 Aligned_cols=83 Identities=31% Similarity=0.482 Sum_probs=66.3
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+.. ..++.+.. . ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-~~~~~~~~--~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 83 (92)
T cd05747 9 KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-SQRHQITS--T--EYKSTFEISKVQMSDEGNYTVVVENSEG 83 (92)
T ss_pred cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-CCcEEEEE--c--CCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence 45567889999999999999999999999999987753 33444431 1 1357899999999999999999999996
Q ss_pred CCCCCceeEEEE
Q psy15235 291 RNSQPNEAFVYV 302 (323)
Q Consensus 291 ~~~~~~~~~~~l 302 (323)
. ....+.|
T Consensus 84 ~----~~~~~~l 91 (92)
T cd05747 84 K----QEAQFTL 91 (92)
T ss_pred C----EeEEEEe
Confidence 6 6666554
No 56
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=4.4e-14 Score=90.67 Aligned_cols=73 Identities=26% Similarity=0.472 Sum_probs=58.2
Q ss_pred CCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
|+.+.|.|.+.|.|.|.+.|+++ +..+. ...+.... ...+|.|.++..+|+|.|+|.|.|..|. .+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-~~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~----~~~ 68 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-NSSRTLVY-------DNGTLDILITTVKDTGSFTCIASNAAGE----ATA 68 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-CCCeEEEe-------cCCEEEEEECChhhCEEEEEEEECCCCe----EEE
Confidence 68899999999999999999984 54443 33444433 3568999999999999999999999966 777
Q ss_pred EEEEEE
Q psy15235 299 FVYVRV 304 (323)
Q Consensus 299 ~~~l~v 304 (323)
.+.|.|
T Consensus 69 ~~~l~v 74 (74)
T cd05764 69 TVELHI 74 (74)
T ss_pred EEEEEC
Confidence 777764
No 57
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=5.5e-14 Score=92.94 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=63.5
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... +... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~------~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~- 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKGNYTCVVENEYGS- 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe------CCceEEEEccCCcccCEEEEEEEEeCCCE-
Confidence 34678999999999999999999999999887643221 1111 02567999999999999999999999965
Q ss_pred CCCceeEEEEEE
Q psy15235 293 SQPNEAFVYVRV 304 (323)
Q Consensus 293 ~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 77 ---~~~~~~l~v 85 (85)
T cd05857 77 ---INHTYHLDV 85 (85)
T ss_pred ---EEEEEEEEC
Confidence 777777764
No 58
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.55 E-value=7.3e-14 Score=92.65 Aligned_cols=84 Identities=24% Similarity=0.483 Sum_probs=63.8
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+.+..+..|+++.|.|.+.|.|. .+.|+++ +..+. ...++.+.. .+ ....|+|.++..+|+|.|+|.|.|..|
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-~~~r~~~~~--~g--~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-SSQRVVVQK--EG--VRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-CCCCEEEEe--CC--CeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 34567889999999999999987 8999985 55553 345555441 11 245899999999999999999999997
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....++.|.+
T Consensus 81 ~---~~~~~i~l~~ 91 (92)
T cd05866 81 Q---TQEATVVLEI 91 (92)
T ss_pred c---EEEEEEEEEE
Confidence 6 2466666654
No 59
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=4.1e-14 Score=93.33 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=61.8
Q ss_pred CeEEEEEEEecCCCC--cEEEEECCeeeeccCC--eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 221 EKLRLECLVVGSPPP--TVEWRIGNDTYFRSQG--RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 221 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
+++.|.|.+.|.|.| .+.|+++|..+..... ++.... .....+.|.|.+++.+|+|.|+|.|.|..|. .
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~----~ 73 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG---GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS----L 73 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe---cccccceEEEccCCHHhCeeeEEEEecCCCc----E
Confidence 468999999999877 5799999988753322 111110 0013578999999999999999999999965 8
Q ss_pred eeEEEEEEccee
Q psy15235 297 EAFVYVRVKGKS 308 (323)
Q Consensus 297 ~~~~~l~v~~~~ 308 (323)
...+.|.|.++|
T Consensus 74 ~~~~~l~V~~pP 85 (85)
T cd04970 74 SASADLIVRGPP 85 (85)
T ss_pred EEEEEEEEECCC
Confidence 888999998865
No 60
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=2.6e-14 Score=91.02 Aligned_cols=70 Identities=30% Similarity=0.520 Sum_probs=56.2
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|.|.+.|++++..+... +..... ....|.|.+++.+|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFEN------FNKTLKIDNVSEEDDGEYRCTASNSLGS----ARHTISV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC--ceeEec------CCCEEEECCCCHHHCEEEEEEEEeCCce----EEEEEEE
Confidence 478999999999999999998876432 221110 3568999999999999999999999965 7788887
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.|
T Consensus 69 ~V 70 (71)
T cd05731 69 TV 70 (71)
T ss_pred EE
Confidence 76
No 61
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.54 E-value=1.1e-13 Score=93.40 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=70.8
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEE
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
+...+....+..|+.+.|.|.+.|.+ .+++.|+|+|..+.. +.++. .....|.|.++..+|+|.|+|.+
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p---~p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQ---PITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccC---CCceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhCEEEEEEE
Confidence 33456667788999999999999988 789999999999875 44443 34678999999999999999999
Q ss_pred EcCCCCCCCCceeeeeEEEecc
Q psy15235 186 IDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~v~~~p 207 (323)
.|..+ .....+.|.|..+|
T Consensus 76 -~N~~G--~~~~~~~l~V~~~P 94 (98)
T cd05762 76 -ENKLG--SRQAQVNLTVVDKP 94 (98)
T ss_pred -EcCCC--ceeEEEEEEEecCC
Confidence 78844 46667778877765
No 62
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=3.6e-14 Score=89.48 Aligned_cols=68 Identities=25% Similarity=0.530 Sum_probs=55.7
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|.|.+.|++++..+... .++.+. ....|.|.++..+|+|.|+|.|.|..|. ...++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES-GKFHIS-------PEGYLAIRDVGVADQGRYECVARNTIGY----ASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC-CCEEEC-------CCCEEEECcCChhhCEEEEEEEECCCCc----EEEEEEe
Confidence 479999999999999999999877533 444444 3578999999999999999999999966 6665554
No 63
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=4e-14 Score=89.41 Aligned_cols=69 Identities=32% Similarity=0.599 Sum_probs=56.1
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
+.|.|.+.|.|+|.+.|++++..+.. .++... ....|.|.+++.+|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK--GRAEIL-------DDKSLKIRNVTAGDEGSYTCEAENMVGK----IEASASL 67 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC--CcEEEe-------eCCEEEECcCChhHCEEEEEEEEcCCCc----EEEEEEE
Confidence 47999999999999999999876642 334433 3568999999999999999999999966 7777776
Q ss_pred EE
Q psy15235 303 RV 304 (323)
Q Consensus 303 ~v 304 (323)
.|
T Consensus 68 ~V 69 (69)
T cd05725 68 TV 69 (69)
T ss_pred EC
Confidence 54
No 64
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.54 E-value=5.5e-14 Score=92.37 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=61.5
Q ss_pred EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
....|+.+.|.|.+.|.|.|.+.|++++..+........ . .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~---- 73 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-R------KKKWTLSLKNLKPEDSGKYTCHVSNRAGE---- 73 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-c------CceEEEEEccCChhhCEEEEEEEEcCCcc----
Confidence 355799999999999999999999999987653322111 1 13578999999999999999999999965
Q ss_pred ceeEEEEEE
Q psy15235 296 NEAFVYVRV 304 (323)
Q Consensus 296 ~~~~~~l~v 304 (323)
....+.|.|
T Consensus 74 ~~~~~~v~v 82 (82)
T cd05856 74 INATYKVDV 82 (82)
T ss_pred EEEEEEEeC
Confidence 777777654
No 65
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.53 E-value=9e-14 Score=90.12 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=61.6
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
...+.+|+.+.|.|.+.+. .+.+.|+++|..+... .++.+. ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-~~~~~~--------~~~L~I~~~~~~DsG~Y~C~a~n~~g~-- 70 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-NRTRIT--------GEEVQIKDAVPRDSGLYACVTSSPSGS-- 70 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-ceEEEe--------CCEEEECCCChhhCEEEEEEEeCCCCc--
Confidence 4567899999999999886 5689999999887543 444444 457999999999999999999999855
Q ss_pred CCceeEEEEEE
Q psy15235 294 QPNEAFVYVRV 304 (323)
Q Consensus 294 ~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 71 --~~~~~~v~V 79 (79)
T cd04973 71 --DTTYFSVNV 79 (79)
T ss_pred --ccEEEEEeC
Confidence 666666554
No 66
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.53 E-value=2.4e-13 Score=90.63 Aligned_cols=93 Identities=19% Similarity=0.392 Sum_probs=74.4
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcCC-CeEEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYY 282 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~ 282 (323)
+|.|.......+.+|+.+.|.|.+.+.|+| .+.|.+++..+... ..++.+.+........++|+|.++..+| .|.|.
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 566766667788999999999999888887 58999988877543 5777777544445568999999998877 68999
Q ss_pred EEEeecccCCCCCceeEEEE
Q psy15235 283 CHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l 302 (323)
|.|.|..|. ....+.|
T Consensus 82 C~a~N~~G~----d~~~i~L 97 (98)
T cd05898 82 CTAWNSFGS----GTAIIQL 97 (98)
T ss_pred EEEEeCCcc----ceEEEEe
Confidence 999999966 6666665
No 67
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.53 E-value=7.3e-14 Score=89.35 Aligned_cols=72 Identities=29% Similarity=0.440 Sum_probs=56.0
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++|.|.+.|+|.|.+.|++++..+.. ...++... ....|.|.+++.+|+|.|+|.|.|..|.. ....+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~---~s~~a~ 70 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-------RSGALQIENSEESDQGKYECVATNSAGTR---YSAPAN 70 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-------CCcEEEECCCChhhCEEEEEEEECCCCce---EcccEE
Confidence 47999999999999999999987753 23444443 25679999999999999999999999761 344555
Q ss_pred EEE
Q psy15235 302 VRV 304 (323)
Q Consensus 302 l~v 304 (323)
|.|
T Consensus 71 l~v 73 (74)
T cd05738 71 LYV 73 (74)
T ss_pred EEE
Confidence 544
No 68
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.52 E-value=1.5e-13 Score=89.09 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=55.4
Q ss_pred EEEEEEecCCCCcEEEEECCeeeeccCCee-eeecCC-CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEHP-EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 224 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
.|.|.+.|+|.|.++|++||..+....... ...... ......+.|+|.++..+|+|.|+|.|.|..|. ..+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~----~~~~~~ 77 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ----DSKSIS 77 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC----eeeEEE
Confidence 368999999999999999999887543211 111000 01123568999999999999999999999976 666655
Q ss_pred EE
Q psy15235 302 VR 303 (323)
Q Consensus 302 l~ 303 (323)
|.
T Consensus 78 ~~ 79 (81)
T cd04971 78 AH 79 (81)
T ss_pred ee
Confidence 53
No 69
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.52 E-value=1e-13 Score=89.75 Aligned_cols=67 Identities=27% Similarity=0.600 Sum_probs=54.9
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|+++.|.|.+.|.|.|.+.|++++..+... .++.+.. .. ....|+|.++..+|.|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 67 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITS--EG--GYGTLTIRDVKESDQGAYTCEAINTRGM 67 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEE--CC--CEEEEEECCCChHHCEEEEEEEEecCCE
Confidence 688999999999999999999998877533 3444331 11 2578999999999999999999999976
No 70
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.52 E-value=4.4e-13 Score=97.23 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=81.4
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeece-eEEeeCCeEEEEEEEecC-CC-CcEEEEECC
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLRLECLVVGS-PP-PTVEWRIGN 243 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~ 243 (323)
+|+|.+++.+|+|.|.|.+ .+. .........|.|..+|.+.+... .....|+.+.|.|.+.|. |. +.+.|++++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~-~~~--~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSV-STP--PHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred eEEECCCCHHHCEEEEEEE-Ecc--CcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 6899999999999999999 554 23456777888888887774433 333478899999999886 54 489999998
Q ss_pred eeeec-----cCCee-eeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 244 DTYFR-----SQGRI-KLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 244 ~~~~~-----~~~~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..... .+... ......++. ...+.|.+..-..++.+.|+|.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 54211 11100 011001111 234678877666666779999999976
No 71
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.51 E-value=1.9e-13 Score=85.77 Aligned_cols=68 Identities=26% Similarity=0.526 Sum_probs=53.1
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
|+.+.|.|.+.|+|.|.+.|++++..+... .+... ....|.|.++. |+|.|+|.|.|..|. ...+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-~~~~~--------~~~~L~i~~~~--d~G~Y~C~A~N~~G~----~~~~ 65 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-DEMPV--------GRNVLELTNIY--ESANYTCVAISSLGM----IEAT 65 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc-cceec--------CccEEEEeccc--cCeeEEEEEEeCCCE----EEEE
Confidence 678999999999999999999999876432 22222 24579999874 799999999999966 5555
Q ss_pred EEE
Q psy15235 300 VYV 302 (323)
Q Consensus 300 ~~l 302 (323)
+.|
T Consensus 66 a~l 68 (69)
T cd05739 66 AQV 68 (69)
T ss_pred EEE
Confidence 554
No 72
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=2e-13 Score=91.17 Aligned_cols=64 Identities=23% Similarity=0.429 Sum_probs=53.8
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~ 291 (323)
+..+.|.|.+.|+|.|.++|++++..+.....++.+. ++.|.|.++. .+|+|.|+|.|.|..|.
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~ 83 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--------GGNLVINNPDKYKDAGRYVCIVSNIYGK 83 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--------CCEEEECcCCcCCCCEEEEEEEEeCcce
Confidence 4579999999999999999999998875444555444 5789999885 68999999999999976
No 73
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.51 E-value=1.2e-13 Score=88.76 Aligned_cols=72 Identities=31% Similarity=0.588 Sum_probs=55.5
Q ss_pred EEEEEEEecCCCCcEEEEECCeeee--ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYF--RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~ 300 (323)
++|.|.+.|.|.|.++|++++.... ....++... . ....|.|.+++.+|+|.|+|.|.|..|. ....+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~----~~~~~ 70 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--P----EDDVFFIVDVKIEDTGVYSCTAQNTAGS----ISANA 70 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--c----CCCEEEEeeCCcccCEEEEEEEEcCCCE----EEeeE
Confidence 4789999999999999999986422 122333332 1 2468999999999999999999999966 77777
Q ss_pred EEEE
Q psy15235 301 YVRV 304 (323)
Q Consensus 301 ~l~v 304 (323)
.|.|
T Consensus 71 ~l~V 74 (75)
T cd05763 71 TLTV 74 (75)
T ss_pred EEEE
Confidence 7766
No 74
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=2.2e-13 Score=90.22 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=65.7
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+.+.+....+.+|+.+.|.|.+.|.| .+.++|+|++..+.. ..++......|.|.++..+|+|.|+|.| .
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P---~P~v~W~k~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~ 73 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNP---VPVIRWRKILEPMPA----TAEISMSGAVLKIFNIQPEDEGTYECEA-E 73 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccC---CCEEEEEECCcCCCC----CCEEecCCCEEEECcCChhhCEEEEEEE-E
Confidence 3445566667788999999999999998 789999999887755 3344444568999999999999999999 7
Q ss_pred CCCCCCCCceeeeeEE
Q psy15235 188 PKSTNTTPLAQADFDV 203 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v 203 (323)
|..+. ....+.|.|
T Consensus 74 N~~G~--~~~~~~l~V 87 (88)
T cd05851 74 NIKGK--DKHQARVYV 87 (88)
T ss_pred cCCCc--eEEEEEEEE
Confidence 87443 344444443
No 75
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.49 E-value=4.7e-13 Score=91.59 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=59.9
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 286 (323)
.+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+... ..+.... ..+......+....+..+|+|.|+|.|.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~D~G~Y~C~a~ 84 (100)
T cd07693 7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PSGSLFFLRVVHGRKGRSDEGVYVCVAH 84 (100)
T ss_pred cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe--cCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence 445677889999999999999999999999999887641 1111111 1111011112223347899999999999
Q ss_pred ecccCCCCCceeEEEEEE
Q psy15235 287 NVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 287 n~~g~~~~~~~~~~~l~v 304 (323)
|..|. ..+..+.|.|
T Consensus 85 N~~G~---~~s~~~~l~v 99 (100)
T cd07693 85 NSLGE---AVSRNASLEV 99 (100)
T ss_pred ccccc---eecceEEEEe
Confidence 99965 2555666655
No 76
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.49 E-value=5.7e-13 Score=89.42 Aligned_cols=64 Identities=28% Similarity=0.490 Sum_probs=52.4
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~ 291 (323)
|+.+.|.|.+.|+|.|.++|+++|..+... ..++.+. ...|.|.++. .+|.|.|+|.|.|..|.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~ 84 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--------AGNLVINNPQKARDAGSYQCLAINRCGT 84 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--------CCeEEEccCCccCcCEEEEEEEEcCcCc
Confidence 568999999999999999999999988633 2344433 4679998765 59999999999999976
No 77
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=2.2e-13 Score=90.75 Aligned_cols=81 Identities=17% Similarity=0.366 Sum_probs=56.5
Q ss_pred CCeEEEEEEEecCCCCcEEEEECC----eeeeccC-CeeeeecC-CCC--CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGN----DTYFRSQ-GRIKLSEH-PEK--GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~----~~~~~~~-~~~~~~~~-~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|+.+.|.|.+.|.|.|.++|++++ ..+.... ........ ... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 2221111 11111100 000 012457999999999999999999999976
Q ss_pred CCCCceeEEEEEE
Q psy15235 292 NSQPNEAFVYVRV 304 (323)
Q Consensus 292 ~~~~~~~~~~l~v 304 (323)
..+++.|.|
T Consensus 81 ----~~~sa~L~V 89 (90)
T cd04974 81 ----SHHSAWLTV 89 (90)
T ss_pred ----ccCCEEEEe
Confidence 667777776
No 78
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.49 E-value=4.1e-13 Score=90.04 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=53.2
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR 291 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~ 291 (323)
+|+.+.|.|.+.|.|.|.++|++++..+.... .++... ...|.|.++. .+|.|.|+|.|.|..|.
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~--------~g~L~i~~~~~~~D~G~Y~C~A~N~~G~ 84 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI--------DGNLIISNPSEVKDSGRYQCLATNSIGS 84 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee--------CCeEEEccCCccCcCEEEEEEEEcCCCe
Confidence 47899999999999999999999998885332 233333 4678998875 69999999999999976
No 79
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.48 E-value=7.4e-13 Score=88.46 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=61.6
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|....+..|+++.|.|.+.|.|+ .+.|++ ++..+... .+..... .....++|+|.+++.+|+|.|+|.|.|..|
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~-~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ-QQISVVQ---NDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC-CCEEEEe---CCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 34566889999999999999964 999998 55554432 3333221 112357899999999999999999999975
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....++.|.|
T Consensus 82 ~---~~~~sv~l~~ 92 (92)
T cd04977 82 T---ESEATVNLKI 92 (92)
T ss_pred C---cceeEEEEEC
Confidence 3 2566666653
No 80
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.48 E-value=2.3e-13 Score=90.95 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=61.7
Q ss_pred eeEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeeecc---CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 214 TLTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
+..+.+|+.+.|.|.+.| .|.+.+.|++++..+... ..++.. ....|.|.++..+|+|.|+|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--------~~~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--------QKDLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--------cCCeEEEccCCcccCeEEEEEE
Confidence 456778999999999988 688899999998764321 122221 2468999999999999999999
Q ss_pred eecccCCCCCceeEEEEEE
Q psy15235 286 NNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 286 ~n~~g~~~~~~~~~~~l~v 304 (323)
.|..|. .+..+.|.|
T Consensus 80 ~N~~g~----~~~~~~L~v 94 (94)
T cd05756 80 RNSTYC----MKVSISLTV 94 (94)
T ss_pred cCCCcc----EEEEEEEEC
Confidence 999965 777777654
No 81
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.47 E-value=5.9e-13 Score=88.76 Aligned_cols=81 Identities=19% Similarity=0.370 Sum_probs=56.9
Q ss_pred CCeEEEEEEEecCCCCcEEEEEC----CeeeeccC-CeeeeecCCC---CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIG----NDTYFRSQ-GRIKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~----~~~~~~~~-~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|+.+.|.|.+.|.|.|.+.|+++ +..+...+ ....+..... .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 33332111 1111110000 0012368999999999999999999999976
Q ss_pred CCCCceeEEEEEE
Q psy15235 292 NSQPNEAFVYVRV 304 (323)
Q Consensus 292 ~~~~~~~~~~l~v 304 (323)
...++.|.|
T Consensus 81 ----~~~~a~L~V 89 (90)
T cd05858 81 ----SHHSAWLTV 89 (90)
T ss_pred ----ccceEEEEE
Confidence 667777766
No 82
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.46 E-value=6.6e-13 Score=85.60 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=58.8
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
+.|.|.+.|.|+|.+.|++++..+.... .++... . ....|.|.++..+|.|.|+|.|.|..|. .+..+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~--~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~ 70 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI--A----NGSELHISNVRYEDTGAYTCIAKNEAGV----DEDISS 70 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEe--C----CCCEEEECcCCcccCEEEEEEEEcCCCC----cceEEE
Confidence 3689999999999999999998875432 223322 1 2467999999999999999999999966 778888
Q ss_pred EEEcc
Q psy15235 302 VRVKG 306 (323)
Q Consensus 302 l~v~~ 306 (323)
|.|.+
T Consensus 71 l~V~~ 75 (76)
T cd05736 71 LFVED 75 (76)
T ss_pred EEEEc
Confidence 87753
No 83
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=7.4e-13 Score=89.34 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=61.5
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeec-----CcCCCeEEEEEE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEA-----TMADRGNYYCHG 285 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~y~C~a 285 (323)
|.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+..... +.... ....|.|.++ ..+|.|.|+|.|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~-------~~~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL-------PNGSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-------cCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence 4456677899999999999999999999999988764322 22222 2455777766 588999999999
Q ss_pred eec-ccCCCCCceeEEEEEE
Q psy15235 286 NNV-ATRNSQPNEAFVYVRV 304 (323)
Q Consensus 286 ~n~-~g~~~~~~~~~~~l~v 304 (323)
.|. .|. ..+..+.|.|
T Consensus 79 ~N~~~G~---~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGS---IVSRTARLTV 95 (95)
T ss_pred ECCccCc---EEEeeeEEeC
Confidence 999 876 1345555543
No 84
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.46 E-value=4.2e-13 Score=86.19 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=52.1
Q ss_pred eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|+...+.+|++++|.|.+.+.|.+ .+.|++|+..+.. ....|+|.++ .+|+|.|+|.|.|..
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------------~~~~l~i~~~-~~dsG~Y~C~a~~~~ 69 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------------TTNSYRIRAA-NNDSGEYRCQTQGSS 69 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------------cCCeEEEeec-ccCCEEeEEECCCCc
Confidence 445778899999999999988764 6999999987731 2567999999 999999999999864
No 85
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.44 E-value=7.8e-13 Score=85.46 Aligned_cols=67 Identities=24% Similarity=0.446 Sum_probs=54.7
Q ss_pred eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|.+..+.+|+++.|.|.+.|+|.| ++.|+++|..+.. .... ..+.|+|..+ .|.|.|.|.|.|..|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---~~~~--------~~s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---PPAP--------SPSVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---CCCC--------CCCEEEEccc--cCCeEEEEEEEeccC
Confidence 446778899999999999999999 7999999988753 1111 2568999887 478999999999997
Q ss_pred C
Q psy15235 291 R 291 (323)
Q Consensus 291 ~ 291 (323)
.
T Consensus 72 ~ 72 (81)
T cd05749 72 V 72 (81)
T ss_pred c
Confidence 5
No 86
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=5.4e-13 Score=85.42 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=53.4
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+|+.+.|.|.+.|.| .+.|.|++++..+.. ..++. .....|.|.+++.+|+|.|+|.| .|..+.
T Consensus 1 eG~~v~l~C~~~g~P---~p~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~ 65 (74)
T cd05745 1 EGQTVDFLCEAQGYP---QPVIAWTKGGSQLSV----DRRHLVLSSGTLRISRVALHDQGQYECQA-VNIVGS 65 (74)
T ss_pred CCCeEEEEeECCEec---CCEEEEEECCEECCC----CCCeEEccCCeEEEeeCCHHhCEEEEEEE-EeCCCc
Confidence 589999999999998 789999999988765 33433 45568999999999999999999 787433
No 87
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.44 E-value=6.4e-13 Score=84.34 Aligned_cols=63 Identities=21% Similarity=0.449 Sum_probs=53.3
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
|+++.|.|.+.+.| .+.|.|+|++..+.. ..++. ..+..|.|.+++.+|+|.|+|.| .|..+.
T Consensus 1 G~~~~l~C~~~g~P---~p~v~W~k~~~~l~~----~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A-~N~~G~ 64 (73)
T cd05852 1 GGRVIIECKPKAAP---KPKFSWSKGTELLVN----NSRISIWDDGSLEILNITKLDEGSYTCFA-ENNRGK 64 (73)
T ss_pred CCeEEEEEecceeC---CCEEEEEeCCEeccc----CCCEEEcCCCEEEECcCChhHCEEEEEEE-ECCCCc
Confidence 67899999999988 789999999987765 55665 45678999999999999999999 787433
No 88
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.43 E-value=8.9e-13 Score=86.74 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=56.8
Q ss_pred CCeEEEEEEEecC--CCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 220 GEKLRLECLVVGS--PPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 220 g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
|+.+.|.|.+.|. |.+.+.|++++..+...... .... .......++|+|.+++.+|+|.|+|.|.|..|+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~---- 74 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSL--SEATELSSTLTIPNATLKDSGTYTCAASSGTMD---- 74 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccccc--ccceEEEEEEEECCCChhhCEEEEEEEccCCCc----
Confidence 7899999999998 78899999887654321110 0000 111124688999999999999999999999976
Q ss_pred ceeEEEEEE
Q psy15235 296 NEAFVYVRV 304 (323)
Q Consensus 296 ~~~~~~l~v 304 (323)
...+..|.|
T Consensus 75 ~~~s~~v~v 83 (84)
T cd05742 75 QKESTKVNI 83 (84)
T ss_pred eEEEEEEEE
Confidence 555555544
No 89
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=8.2e-13 Score=85.80 Aligned_cols=72 Identities=29% Similarity=0.505 Sum_probs=53.5
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
++|.|.+.|+|.|.+.|++++..... ..+++... ...+|.|.++..+|+|.|+|.|.|..|. .
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~---~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL-------SNGSLLIKHVLEEDSGYYLCKVSNDVGA---D 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe-------cCCeEEECcCCcccCEEEEEEEEeCCCC---C
Confidence 47999999999999999997543210 22333333 3578999999999999999999999976 2
Q ss_pred ceeEEEEEE
Q psy15235 296 NEAFVYVRV 304 (323)
Q Consensus 296 ~~~~~~l~v 304 (323)
.+..+.|.|
T Consensus 71 ~s~~~~l~~ 79 (79)
T cd05734 71 ASKSMVLTV 79 (79)
T ss_pred CceEEEEeC
Confidence 355666543
No 90
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=8.7e-13 Score=86.34 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=55.9
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCe---eeeccC----CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGND---TYFRSQ----GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
|+.+.|.|.+.|.|.|.+.|++++. .+.... .++... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~- 72 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGL- 72 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCce-
Confidence 6889999999999999999999742 111110 111111 2478999999999999999999999965
Q ss_pred CCCceeEEEEEE
Q psy15235 293 SQPNEAFVYVRV 304 (323)
Q Consensus 293 ~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 73 ---~~~~~~l~v 81 (81)
T cd05765 73 ---LRANFPLSV 81 (81)
T ss_pred ---EEEEEEEeC
Confidence 777777764
No 91
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.43 E-value=8.1e-13 Score=85.07 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=51.0
Q ss_pred EEEEEEEec-CCCCcEEEEECCeeeeccCCee--eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRI--KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.| .|.|.+.|++++..+....... .+. ......+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR----NKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE----ecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 469999998 8999999999998876433211 121 1113578999999999999999999999976
No 92
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.43 E-value=2.2e-12 Score=87.25 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=59.5
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---e------ceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---Q------SKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~------~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
...+..|+++.|.|.+.+++| .+.+.|+|||.++.. ..... . ....|.|..+..+|+|.|+|.|
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A- 84 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLA- 84 (101)
T ss_pred eEEEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEE-
Confidence 455778999999999999433 789999999999875 22211 1 2477999999999999999999
Q ss_pred cCCCCCCCCceeeeeEE
Q psy15235 187 DPKSTNTTPLAQADFDV 203 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v 203 (323)
.|..+ ..+..+.|.|
T Consensus 85 ~N~~G--~~~~t~~L~V 99 (101)
T cd04975 85 SNSDA--SKSLTFELYV 99 (101)
T ss_pred ECCCc--cEEEEEEEEE
Confidence 78843 3444555544
No 93
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.42 E-value=2.2e-12 Score=86.34 Aligned_cols=69 Identities=23% Similarity=0.449 Sum_probs=56.5
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
|....+.+|+++.|.|.+.+.| .+.+.|++++.++.. ..++. .....|.|.++..+|+|.|+|.+ .|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N 79 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDP---DPEVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVV-KN 79 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecC---CCeEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEE-EE
Confidence 4455678899999999999988 789999999998865 33332 22457999999999999999999 77
Q ss_pred CC
Q psy15235 189 KS 190 (323)
Q Consensus 189 ~~ 190 (323)
..
T Consensus 80 ~~ 81 (92)
T cd05737 80 KY 81 (92)
T ss_pred CC
Confidence 74
No 94
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.41 E-value=1.8e-12 Score=85.40 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=60.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
.|....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ..++......|.|.++..+|+|.|+|.| .|..+
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~k~g~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~G 75 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNP---RPAYRWLKNGQPLAS----ENRIEVEAGDLRITKLSLSDSGMYQCVA-ENKHG 75 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeC---CCEEEEEECCEECCC----CCeEEEeCCEEEEeeCCHHHCEEEEEEE-ECCCC
Confidence 56667788999999999999988 789999999998865 4555555668999999999999999999 77743
No 95
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.41 E-value=3.4e-12 Score=85.36 Aligned_cols=73 Identities=30% Similarity=0.574 Sum_probs=61.8
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.+...+....+..|+++.|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+|.
T Consensus 2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p---~~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 74 (90)
T PF07679_consen 2 VFTKKPKDVTVKEGESVTLECEVSGNP---PPTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDAGTYTCV 74 (90)
T ss_dssp EEEEESSEEEEETTSEEEEEEEEEESS---SSEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGSEEEEEE
T ss_pred EEEEecCCEEEeCCCEEEEEEEEEeCC---CCcccccccccceee----eeeeeeecccceeEEccCCCChhhCEEEEEE
Confidence 344456677788999999999999987 789999999999987 45544 5678999999999999999999
Q ss_pred EEcCC
Q psy15235 185 LIDPK 189 (323)
Q Consensus 185 ~~~~~ 189 (323)
+ .+.
T Consensus 75 ~-~n~ 78 (90)
T PF07679_consen 75 A-SNS 78 (90)
T ss_dssp E-EET
T ss_pred E-EEC
Confidence 9 666
No 96
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.41 E-value=4.8e-12 Score=82.93 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=58.5
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
|++++|.|.+.++|.+.+.|+++++........ .... .......++|+|.+++.+|+|.|+|.|.|..+. .....
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~--~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK--VPATTLRSTLTFPHATVEDSGTYECAAHESTQD--QKAFK 76 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe--cCCcEEEEEEEECCCCcCCCEEEEEEEEECccC--cceeE
Confidence 789999999999999999999877643211110 0011 011123689999999999999999999998753 34677
Q ss_pred EEEEEEc
Q psy15235 299 FVYVRVK 305 (323)
Q Consensus 299 ~~~l~v~ 305 (323)
++.|.|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 7777764
No 97
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.40 E-value=1.4e-12 Score=84.04 Aligned_cols=63 Identities=24% Similarity=0.514 Sum_probs=49.3
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCc----CCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATM----ADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.|+|.|.++|++++..+... ..++.... ..+.|.|.++.. +|+|.|+|.|.|..|.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 478999999999999999999887432 23333321 357899998754 7899999999999976
No 98
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.39 E-value=1.2e-12 Score=82.90 Aligned_cols=60 Identities=37% Similarity=0.581 Sum_probs=50.5
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.|.|.+.|.| .+.+.|+|+|.++.. ..++......|.|.++..+|+|.|+|.+ .|..+.
T Consensus 1 ~~l~c~v~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~L~I~~v~~~D~G~YtC~a-~N~~g~ 60 (71)
T cd04976 1 VRLPVKVKAYP---PPEIQWYKNGKLISE----KNRTKKSGHSLTIKDVTEEDAGNYTVVL-TNKQAK 60 (71)
T ss_pred CEEEeEEEEeC---CCEEEEEECCEECCC----CCEEEcCCCEEEECcCCHHHCEEEEEEE-EcCCcc
Confidence 46899999998 789999999999876 4455555678999999999999999999 777433
No 99
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.39 E-value=2.6e-12 Score=82.61 Aligned_cols=63 Identities=21% Similarity=0.492 Sum_probs=47.5
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcC----CCeEEEEEEeecccC
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMA----DRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.|+|.|++.|++++..+... ..++.+. . ..++|.|..+..+ |.|.|+|.|.|..|.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~--~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK--P----NTGTLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe--C----CCceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 479999999999999999999876322 2223222 1 2567888877643 789999999999976
No 100
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.39 E-value=3.2e-12 Score=82.16 Aligned_cols=63 Identities=24% Similarity=0.468 Sum_probs=48.0
Q ss_pred EEEEEEEecCCCCcEEEEECCeeee-ccCCeeeeecCCCCCCcceeEEEeecCc----CCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYF-RSQGRIKLSEHPEKGTANSVLQIDEATM----ADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.|+|.|.++|++++..+. ..+.++.+.. ..++|.|..+.. +|.|+|+|.|.|..|.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGT 68 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC------CCceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence 4689999999999999999998763 2233443321 357899987642 4699999999999976
No 101
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.38 E-value=5.2e-12 Score=84.60 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=62.0
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C 183 (323)
|.+...|....+..|+.+.|.|.+.+.| .+.+.|+++|..+.. ..++. .....|.|.++..+|+|.|.|
T Consensus 4 ~~~~~~p~~~~~~~G~~~~L~C~~~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 76 (92)
T cd05747 4 ATILTKPRSLTVSEGESARFSCDVDGEP---APTVTWMREGQIIVS----SQRHQITSTEYKSTFEISKVQMSDEGNYTV 76 (92)
T ss_pred CcccccCccEEEeCCCcEEEEEEEeecC---CCEEEEEECCEECCC----CCcEEEEEcCCeeEEEECCCCcccCEeEEE
Confidence 4445567777789999999999999998 789999999988765 44443 235689999999999999999
Q ss_pred EEEcCCCC
Q psy15235 184 RLIDPKST 191 (323)
Q Consensus 184 ~~~~~~~~ 191 (323)
.+ .|..+
T Consensus 77 ~a-~N~~G 83 (92)
T cd05747 77 VV-ENSEG 83 (92)
T ss_pred EE-EcCCC
Confidence 99 77743
No 102
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=4.2e-12 Score=81.52 Aligned_cols=67 Identities=24% Similarity=0.509 Sum_probs=54.4
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+.+.|+...+.+|++++|+|.+.+.+. ...+.|++||..+.. ....|.|.++ .+|+|.|+|.+ .+
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a-~~ 67 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQT-QG 67 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEEC-CC
Confidence 3445677777889999999999998763 357999999988743 3567899999 99999999999 65
Q ss_pred C
Q psy15235 189 K 189 (323)
Q Consensus 189 ~ 189 (323)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 4
No 103
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.38 E-value=2.5e-12 Score=83.23 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=57.3
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
|+++.|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+|.+ .|..+......
T Consensus 1 G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVP---TPIINWRLNWGHVPD----SARVSITSEGGYGTLTIRDVKESDQGAYTCEA-INTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEec---CCEEEEEECCeECCC----CCCEEEEECCCEEEEEECCCChHHCEEEEEEE-EecCCEEEecc
Confidence 68899999999988 789999999887765 34443 34578999999999999999999 78865554454
Q ss_pred eeeeE
Q psy15235 198 QADFD 202 (323)
Q Consensus 198 ~~~l~ 202 (323)
...|+
T Consensus 73 ~~~~~ 77 (78)
T cd05743 73 DGILT 77 (78)
T ss_pred cEEEE
Confidence 44443
No 104
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.37 E-value=1.3e-12 Score=80.90 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=50.7
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
+.|.|.+.|.| .|.+.|||||.++.. . .....|.|.++..+|+|.|+|.| .|..+. .+.++.+++
T Consensus 1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~----~----~~~~~L~i~~v~~~D~G~YtC~a-~N~~g~--~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYP---PPEFQWYKDGKLISG----K----HSQHSLQIKDVTEASAGTYTLVL-WNSAAG--LEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeC---CCEEEEEECCEECcc----c----CCcCEEEECCCCHHHCEEEEEEE-EECCcc--EEEEEEEEE
Confidence 47999999999 799999999998863 1 23568999999999999999999 777443 334444443
No 105
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.37 E-value=3.6e-12 Score=83.05 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=57.4
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|.+..+..|+++.|.|.+.+ |.+.+.|++||..+..+..++.+. ...|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--------~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--------RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34567889999999999864 678999999999987654565554 4679999999999999999999874
No 106
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.36 E-value=6.3e-12 Score=81.45 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=54.6
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
....+.+|+.+.|.|.+.+.+ +.+.|+|+|.++.. ..++......|.|.+++.+|+|.|+|.+ .|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~l~~----~~~~~~~~~~L~I~~~~~~DsG~Y~C~a-~n~~ 68 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDDV----QSINWTKDGVQLGE----NNRTRITGEEVQIKDAVPRDSGLYACVT-SSPS 68 (79)
T ss_pred CcEEecCCCCEEEEEEecCCC----ceEEEeeCCcCCCC----CceEEEeCCEEEECCCChhhCEEEEEEE-eCCC
Confidence 445677899999999998854 47999999998876 4455433468999999999999999999 6763
No 107
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.36 E-value=7.5e-12 Score=83.14 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
.|....+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..........|.|.+++.+|+|.|+|.+ .|..+.
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G~ 78 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNP---VPQIKWRKVDGSMPS----SAEISMSGAVLKIPNIQFEDEGTYECEA-ENIKGK 78 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeC---CCEEEEEECCCcCCC----ccEEEEeCCEEEECCCCcccCEEEEEEE-EECCCc
Confidence 55666678899999999999988 789999998876644 2333345678999999999999999999 787444
Q ss_pred CCCceeeeeEE
Q psy15235 193 TTPLAQADFDV 203 (323)
Q Consensus 193 ~~~~~~~~l~v 203 (323)
......|.|
T Consensus 79 --~~~~~~l~V 87 (88)
T cd04968 79 --DTHQGRIYV 87 (88)
T ss_pred --EEEEEEEEE
Confidence 444444444
No 108
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.36 E-value=9.1e-12 Score=81.94 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=55.8
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
..+..|+.+.|.|.+.|.| .|.+.|++++.++... ..++. .....|.|.++..+|+|.|+|.| .|..+
T Consensus 5 ~~v~~G~~v~l~c~~~G~P---~P~v~W~k~~~~i~~~---~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a-~N~~G 76 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEP---APTVTWSRGDKAFTET---EGRVRVESYKDLSSFVIEGAEREDEGVYTITV-TNPVG 76 (86)
T ss_pred EEEEcCCEEEEEeeEeecC---CCeEEEEECCEECccC---CCeEEEEEcCCeEEEEECCCccCcCEEEEEEE-EeCCC
Confidence 4467899999999999999 7999999999988651 22443 23578999999999999999999 78743
No 109
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.36 E-value=2e-12 Score=81.06 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=52.6
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF 201 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 201 (323)
+.|.|.+.|.| .|.+.|+|+|.++.. ..++ .....|.|.++..+|+|.|+|.+ .|..+......++.|
T Consensus 1 ~~~~c~v~G~P---~P~v~W~k~g~~l~~----~~~~-~~~~~L~I~~v~~~D~G~YtC~a-~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYP---PPEVKWYKNGQLIVL----NHTF-KRGVHLTIYEVTEKDAGNYTVVL-TNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeC---CCEEEEEECCEECCC----CCEE-ccCCEEEECcCCHHHCEEEEEEE-EECCCceeeEEEEEE
Confidence 46899999999 799999999999875 3333 23457999999999999999999 788555444444443
No 110
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.35 E-value=4.6e-12 Score=80.68 Aligned_cols=61 Identities=20% Similarity=0.459 Sum_probs=48.5
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.|.|.+.|.| .|.|.|+|++..+... ..++. .....|.|.++..+|+|.|+|.| .|..|.
T Consensus 1 v~l~C~v~G~P---~P~i~W~k~~~~i~~~---~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A-~N~~G~ 66 (75)
T cd05892 1 VKLECQISAIP---PPKIFWKRNNEMVQYN---TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA-VNEAGV 66 (75)
T ss_pred CEEEEEEEecC---CCeEEEEECCEECcCC---CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEE-EcCcCe
Confidence 57999999998 8999999999988641 23443 12247999999999999999999 787443
No 111
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=7.4e-12 Score=80.56 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=56.0
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF 201 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 201 (323)
|+++.|.|.+.+.| .+.++|+++|.++.... ...++......|.|.+++.+|+|.|+|.+ .|..+. ....+.|
T Consensus 1 G~~v~l~C~~~G~P---~p~i~W~k~g~~i~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~--~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIP---TPNITWSINGAPIEGTD-PDPRRHVSSGALILTDVQPSDTAVYQCEA-RNRHGN--LLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeC---CCeEEEEECCEECCCCC-CCceEEeeCCEEEECCCChhhCEEEEEEE-ECCCCe--EEEEEEE
Confidence 68899999999988 78999999998876411 12234444568999999999999999999 787433 3334444
Q ss_pred EE
Q psy15235 202 DV 203 (323)
Q Consensus 202 ~v 203 (323)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 43
No 112
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.35 E-value=5.9e-12 Score=83.55 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred eEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 215 LTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..+..|++..|.|...+ +|.|.+.|++++..+.....+.. ....|.|.++..+|+|.|+|.|.|..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence 45678999999998843 25779999999998864433221 26789999999999999999999998
Q ss_pred cCCCCCceeEEEEEE
Q psy15235 290 TRNSQPNEAFVYVRV 304 (323)
Q Consensus 290 g~~~~~~~~~~~l~v 304 (323)
|.........+.|.|
T Consensus 76 ~~~~~~~t~t~~l~v 90 (92)
T cd05757 76 NGKQYNVTRTISLTV 90 (92)
T ss_pred CCEEEEEEEEEEEEE
Confidence 663333444444443
No 113
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=6.5e-12 Score=80.17 Aligned_cols=63 Identities=25% Similarity=0.465 Sum_probs=52.5
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|.+++.+|+|.|+|.+ .|..+.
T Consensus 1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G~ 64 (73)
T cd04969 1 GGDVIIECKPKAAP---KPTISWSKGTELLTN----SSRICIWPDGSLEILNVTKSDEGKYTCFA-ENFFGK 64 (73)
T ss_pred CCeEEEEEeeeEcC---CCEEEEEECCEEccc----CCCEEECCCCeEEEccCChhHCEEEEEEE-ECCCCc
Confidence 67899999999988 789999999988765 45555 34567999999999999999999 787433
No 114
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=1.2e-11 Score=82.33 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=62.4
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
...+.+|+.+.|.|.+.+ |.+.+.|++++..+.... .++... ...|.|.+++.+|+|.|+|.|.+..+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--------EDGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--------CCCEEEccCCHHHCEEEEEEEecCcc
Confidence 456788999999999976 788999999998765432 233322 35599999999999999999998764
Q ss_pred CCCCCceeEEEEEEcc
Q psy15235 291 RNSQPNEAFVYVRVKG 306 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~ 306 (323)
. .....+.|.|.+
T Consensus 76 ~---~~~~~~~l~V~~ 88 (89)
T cd04979 76 K---QTLATYSLNVLE 88 (89)
T ss_pred c---eeEeEEEEEEec
Confidence 3 467777777753
No 115
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.33 E-value=2.6e-11 Score=80.10 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=61.5
Q ss_pred EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
.+..|+.+.|.|.+.+.|.+.+.|++++..+..... ..... .......|.|.++..+|+|.|.|.+.|..|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~---- 76 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR-IGGYK---VRKKKWTLILESVVPSDSGKYTCIVENKYGS---- 76 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc-eeEEE---ccCcEEEEEEeECCcccCEEEEEEEEECCce----
Confidence 456799999999999999999999999887653221 11110 0113467999999999999999999999965
Q ss_pred ceeEEEEEE
Q psy15235 296 NEAFVYVRV 304 (323)
Q Consensus 296 ~~~~~~l~v 304 (323)
...++.|.|
T Consensus 77 ~~~~~~l~v 85 (85)
T cd05729 77 INHTYKVDV 85 (85)
T ss_pred EEEEEEEeC
Confidence 667777654
No 116
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.33 E-value=1.8e-11 Score=81.23 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=59.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
.+....+..|+++.|.|.+.|.| . .+.|+++ +..+.. ..++. .....|.|.++..+|+|.|+|.| .
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P---~-~v~W~k~~g~~~~~----~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A-~ 76 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIVS----SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA-T 76 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeC---C-eEEEEeCCCeEecC----CCCEEEEeCCCeeEEEEecCChHHCEEEEEEE-E
Confidence 45556688899999999999977 6 8999984 666654 44554 22358999999999999999999 7
Q ss_pred CCCCCCCCceeeeeE
Q psy15235 188 PKSTNTTPLAQADFD 202 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~ 202 (323)
|..+.. ...++.|.
T Consensus 77 N~~G~~-~~~~i~l~ 90 (92)
T cd05866 77 DAKGQT-QEATVVLE 90 (92)
T ss_pred cCCCcE-EEEEEEEE
Confidence 774432 24444444
No 117
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.33 E-value=4.6e-12 Score=79.54 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=51.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
+.|.|.+.|.| .|.+.|+|++.++... ..++......|.|.++..+|+|.|+|.+ .+..........
T Consensus 1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~~---~~~~~~~~~~L~I~~v~~~D~G~YtC~a-~~~~~~~~~~~~ 67 (72)
T cd07702 1 YRLTPKVKAFP---APEVIWLKDGLPAAEK---CSRYHVDGYSLVIKDVTEEDAGIYTILL-GIKQYNLFKNLT 67 (72)
T ss_pred CeEEeeEEEcC---CCeEEEEECCEECCCC---CcEEEeCCCEEEECcCCHHHCEEEEEEE-EccccceEeeEE
Confidence 36899999999 7899999999887651 1344444458999999999999999999 776444333333
No 118
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.33 E-value=1.4e-11 Score=83.44 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=59.7
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----------eceeEEEEeeeecCCCeeEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----------QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
...+..|+.+.|.|.+.|+| .|.+.|+|||.++.. +.+.. .....|.|.++..+|+|.|+|.|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P---~P~v~W~kdg~~l~~----~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A 84 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYP---PPQIRWLKDNRTLIE----NLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALA 84 (101)
T ss_pred eEEEecCCcEEEEEEEEEeC---CCceEEEECCEECcC----CcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEE
Confidence 45577899999999999999 789999999999875 22211 12368999999999999999999
Q ss_pred EcCCCCCCCCceeeeeEE
Q psy15235 186 IDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~v 203 (323)
.|..+ ..+.++.|.|
T Consensus 85 -~N~~g--~~~~t~~l~V 99 (101)
T cd05859 85 -QNEDA--VKSYTFALQI 99 (101)
T ss_pred -EcCCc--eEEEEEEEEE
Confidence 77733 3444555544
No 119
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.33 E-value=2.3e-11 Score=81.08 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.|....+..|+.+.|.|.+.|.| .+.+.|++++..+.. ..... .....|.|.++..+|.|.|+|.| .|
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A-~N 77 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQ----TRTDTLETTVDIYNLQLSNITSETQTTVTCTA-EN 77 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccC----CccEEEEecCCEEEEEEecCCcccCEEEEEEE-EC
Confidence 44555588999999999999988 899999999987754 22211 34568999999999999999999 77
Q ss_pred CCCC
Q psy15235 189 KSTN 192 (323)
Q Consensus 189 ~~~~ 192 (323)
..+.
T Consensus 78 ~~G~ 81 (90)
T cd04972 78 PVGQ 81 (90)
T ss_pred CCCc
Confidence 7433
No 120
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.33 E-value=1.6e-11 Score=82.84 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=61.8
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT 194 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 194 (323)
..+..|+++.|.|.+.|.| .+.+.|+++|..+... ..++. .....|.|.++..+|+|.|+|.| .|..+.
T Consensus 13 ~~~~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~-- 83 (95)
T cd05730 13 ATANLGQSVTLACDADGFP---EPTMTWTKDGEPIESG---EEKYSFNEDGSEMTILDVDKLDEAEYTCIA-ENKAGE-- 83 (95)
T ss_pred eEEeCCCCEEEEEeccEeC---CCEEEEEECCEECcCC---CCEEEEeCCCCEEEECCCChhhCEEEEEEE-EcCCCe--
Confidence 3477899999999999988 7899999999887651 13333 34457999999999999999999 788543
Q ss_pred CceeeeeEEEe
Q psy15235 195 PLAQADFDVIM 205 (323)
Q Consensus 195 ~~~~~~l~v~~ 205 (323)
....+.|.|..
T Consensus 84 ~~~~~~L~V~~ 94 (95)
T cd05730 84 QEAEIHLKVFA 94 (95)
T ss_pred EEEEEEEEEEe
Confidence 45566666543
No 121
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.33 E-value=9.9e-12 Score=78.74 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=49.0
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
.+.|.|.+.|.| .+.++|+|++..+.. ..++. .....|.|.++..+|+|.|+|.| .|..+
T Consensus 1 ~v~l~C~~~G~P---~p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A-~N~~G 61 (71)
T cd05723 1 DVIFECEVTGKP---TPTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEGFYQCIA-ENDVG 61 (71)
T ss_pred CEEEEEEEEEeC---CCEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCEEEEEEE-EcCCC
Confidence 478999999998 789999999988765 44444 34456889999999999999999 78743
No 122
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.33 E-value=2.3e-11 Score=80.49 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=59.6
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
|+.++|.|.+.+.| .+.+.|++++..+... ..++. .....|.|.++..+|+|.|+|.| .|..+.
T Consensus 1 g~~~~l~C~~~g~p---~~~i~W~k~~~~i~~~---~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A-~N~~G~- 72 (88)
T cd05735 1 GQKKEMSCTAHGEK---PIIVRWEKEDRIINPE---MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHA-INSYGE- 72 (88)
T ss_pred CCeEEEEEEEECCC---CCEEEEeeCCEECCCC---CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEE-EcCCCc-
Confidence 78999999999987 7899999999877541 22332 12267999999999999999999 788544
Q ss_pred CCceeeeeEEEecc
Q psy15235 194 TPLAQADFDVIMKP 207 (323)
Q Consensus 194 ~~~~~~~l~v~~~p 207 (323)
....+.|.|..+|
T Consensus 73 -~~~~~~L~V~~~P 85 (88)
T cd05735 73 -DRGIIQLTVQEPP 85 (88)
T ss_pred -ceEEEEEEEeCCC
Confidence 5667777777655
No 123
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.32 E-value=9.7e-12 Score=80.12 Aligned_cols=72 Identities=18% Similarity=0.492 Sum_probs=54.2
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD 202 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 202 (323)
++|.|.+.|.| .+.++|+|+|.++... ..++. .....|.|.++..+|+|.|.|.+ .|..+.......+.|.
T Consensus 1 v~L~C~~~g~P---~p~v~W~k~g~~l~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHP---RPTYQWFRDGTPLSDG---QGNYSVSSKERTLTLRSAGPDDSGLYYCCA-HNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecC---CCcEEEEECCEECCCC---CccEEEeCCCCEEEEeeCCcccCEEEEEEE-EeCCCeEeeCceEEEE
Confidence 57999999988 7899999999987551 12222 34468999999999999999999 7875554444555555
Q ss_pred E
Q psy15235 203 V 203 (323)
Q Consensus 203 v 203 (323)
|
T Consensus 74 v 74 (77)
T cd05760 74 I 74 (77)
T ss_pred E
Confidence 4
No 124
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.31 E-value=2e-11 Score=81.52 Aligned_cols=65 Identities=29% Similarity=0.566 Sum_probs=51.8
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccC
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATR 291 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~ 291 (323)
.++.+.|.|.+.|+|.|.++|++++..+... ..++... ...|.|.++.. +|+|.|+|.|.|..|.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--------~~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--------GGNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--------CCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 3467999999999999999999999887432 2333332 46789988774 8999999999999975
No 125
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.31 E-value=1.7e-11 Score=79.59 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=59.2
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
+++.|.|.+.+.+.. .+.|.|++||.++... ....++. .....|.|.+++..|+|.|+|.| .+.. ....+
T Consensus 1 ~~~~l~C~v~~d~~l-~~~~~W~~dg~~i~~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a-~n~~--~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSL-DIVFTWSFNGHLIDFQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMV-QTSV--DKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCC-CcEEEEEECCEECccc-CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEE-Eccc--CceEE
Confidence 468999999773322 5799999999998631 1123443 13468999999999999999999 7773 44677
Q ss_pred eeeeEEEecc
Q psy15235 198 QADFDVIMKP 207 (323)
Q Consensus 198 ~~~l~v~~~p 207 (323)
+..|.|..||
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 7788887765
No 126
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.30 E-value=2.6e-11 Score=80.99 Aligned_cols=69 Identities=28% Similarity=0.517 Sum_probs=55.4
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
|....+.+|+.+.|.|.+.+.| .+.+.||+++..+.. ..++. .....|.|.++..+|+|.|+|.+ .|
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N 79 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNP---DPEVIWFKNDQDIEL----SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV-KN 79 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeC---CCeEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE-Ee
Confidence 4555678999999999999887 789999999988765 33332 22347999999999999999999 77
Q ss_pred CC
Q psy15235 189 KS 190 (323)
Q Consensus 189 ~~ 190 (323)
..
T Consensus 80 ~~ 81 (92)
T cd05891 80 KY 81 (92)
T ss_pred CC
Confidence 73
No 127
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.30 E-value=3.6e-11 Score=80.59 Aligned_cols=84 Identities=20% Similarity=0.417 Sum_probs=59.4
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|....+..|++++|.|.+.|.|+ .+.+.|++ ++..+... ..++. .....|.|.+++.+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~~---~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A- 79 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTPN---QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV- 79 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCcccc---CCeEEEEeCCCCceEEEEeccChhhCEEEEEEE-
Confidence 455556788999999999999873 36999998 67655431 22332 12468999999999999999999
Q ss_pred cCCCCCCCCceeeeeEE
Q psy15235 187 DPKSTNTTPLAQADFDV 203 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v 203 (323)
.|..+ +...+++.|.|
T Consensus 80 ~N~~~-g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDE-GESEATVNVKI 95 (96)
T ss_pred EcCCC-CcEEEEEEEEE
Confidence 77631 23444555443
No 128
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.30 E-value=3.2e-11 Score=79.16 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=57.5
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE---E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL---T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
+.++|.|.+.+.|.. ...+.|+++|..+.... ...++ . .....|.|.+++..|+|.|+|.| .|.. +....
T Consensus 1 ~~~~L~C~a~g~P~p-~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A-~n~~--g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTM-DLTFTWSLDDFPIDLDK-PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTA-QTVV--DSASA 75 (85)
T ss_pred CcEEEEEEEecCCCC-CeEEEEEECCeEccccC-CCCcEEEEEecceEeEEEEccCChhhCeEEEEEE-ecCC--CCEEE
Confidence 468999999998731 23789999998875411 11222 1 24568999999999999999999 7774 34566
Q ss_pred eeeeEEEecc
Q psy15235 198 QADFDVIMKP 207 (323)
Q Consensus 198 ~~~l~v~~~p 207 (323)
++.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 6777776554
No 129
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=1.4e-11 Score=79.30 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=49.1
Q ss_pred EEEEEEEec-CCCCcEEEEECCeeeeccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.+ .|.+.+.|++++..+.... .++.+. . ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~--~--~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR--K--KKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE--e--CCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 479999864 6778999999998875321 222222 1 113578999999999999999999999966
No 130
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.29 E-value=4.6e-11 Score=80.81 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=58.5
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc-cccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-ELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
|.+...+.......|+.++|.|.+.|.| .+.++|++++..+.... ....++. .....|.|.+++.+|+|.|+
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDP---IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeC---CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 3444444445566689999999999988 78999999887664311 1122332 23368999999999999999
Q ss_pred EEEEcCCCCC
Q psy15235 183 CRLIDPKSTN 192 (323)
Q Consensus 183 C~~~~~~~~~ 192 (323)
|.| .|..+.
T Consensus 80 C~A-~N~~G~ 88 (97)
T cd05869 80 CTA-SNTIGQ 88 (97)
T ss_pred EEE-ecCCCC
Confidence 999 788443
No 131
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.29 E-value=6.4e-11 Score=79.11 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=55.3
Q ss_pred ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .+.++.+.. .......|.|.++..+|.|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK---STPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---CCCceEEEEECCCCcccCEEEEEEE
Confidence 456788999999999999999999999998764321 123333221 0113578999999999999999999
Q ss_pred eec
Q psy15235 286 NNV 288 (323)
Q Consensus 286 ~n~ 288 (323)
...
T Consensus 82 ~t~ 84 (95)
T cd05882 82 FTM 84 (95)
T ss_pred Eee
Confidence 983
No 132
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.29 E-value=2.5e-11 Score=77.73 Aligned_cols=59 Identities=25% Similarity=0.512 Sum_probs=49.4
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.+.|.|.+.|.| .+.+.|+++|..+.. ..++. .....|.|.++..+|+|.|+|.| .|..
T Consensus 1 ~~~l~c~~~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~ 63 (74)
T cd05748 1 SVRLEVPISGRP---TPTVTWSKDGKPLKL----SGRVQIETTASSTSLVIKNAERSDSGKYTLTL-KNPA 63 (74)
T ss_pred CEEEEeeEeeeC---CCeEEEEECCEEcCC----CCeEEEEECCCeEEEEECCCCcCcCEEEEEEE-ECCC
Confidence 478999999999 789999999998855 34443 34678999999999999999999 7874
No 133
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.29 E-value=2.6e-11 Score=80.05 Aligned_cols=79 Identities=14% Similarity=0.356 Sum_probs=57.1
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP 195 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 195 (323)
..+..|+.+.|.|.+.+.| .+.+.|+|+|..+........ +.......|.|.++..+|+|.|+|.+ .|..+. .
T Consensus 4 ~~v~~G~~~~L~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a-~N~~G~--~ 77 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNP---TPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYGS--I 77 (85)
T ss_pred EEcCCCCEEEEEEEcCCCC---CCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEE-EeCCCE--E
Confidence 3467899999999999987 789999999998865111100 11133457899999999999999999 777433 3
Q ss_pred ceeeee
Q psy15235 196 LAQADF 201 (323)
Q Consensus 196 ~~~~~l 201 (323)
..++.|
T Consensus 78 ~~~~~l 83 (85)
T cd05857 78 NHTYHL 83 (85)
T ss_pred EEEEEE
Confidence 444444
No 134
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.29 E-value=1.2e-11 Score=77.94 Aligned_cols=60 Identities=27% Similarity=0.563 Sum_probs=50.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
|.|.|.+.|.| .+.+.|+|++..+.. ..++. .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus 1 v~L~C~~~g~P---~p~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~ 61 (69)
T cd05746 1 VQIPCSAQGDP---EPTITWNKDGVQVTE----SGKFHISPEGYLAIRDVGVADQGRYECVA-RNTIGY 61 (69)
T ss_pred CEeEecceEeC---CCEEEEEECCEECCC----CCCEEECCCCEEEECcCChhhCEEEEEEE-ECCCCc
Confidence 57999999988 789999999988865 45554 44678999999999999999999 787433
No 135
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.28 E-value=1.7e-11 Score=78.71 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF 201 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 201 (323)
|+.+.|.|.+.|.| .|+|+|+++|.++..... ..........|.|.+++.+|+|.|+|.| .|..+. ...++.|
T Consensus 1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~~-~~~~~~~~~~l~i~~v~~~D~G~Y~C~A-~N~~G~--~~~~~~l 73 (76)
T cd05868 1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAPT-DPSRKVDGDTIIFSKVQERSSAVYQCNA-SNEYGY--LLANAFV 73 (76)
T ss_pred CCCEEEEEEeeEeC---CCeEEEEECCEEccccCC-CceEEecCCEEEECCCCHhhCEEEEEEE-EcCCCE--EEEEEEE
Confidence 67899999999998 799999999998854111 1111233457899999999999999999 787433 4444444
Q ss_pred EE
Q psy15235 202 DV 203 (323)
Q Consensus 202 ~v 203 (323)
.|
T Consensus 74 ~v 75 (76)
T cd05868 74 NV 75 (76)
T ss_pred Ee
Confidence 44
No 136
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.27 E-value=2.8e-11 Score=79.80 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=58.4
Q ss_pred eceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 212 VETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.. +.. . ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---~~~-~-------~~~~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---RAM-D-------FNGILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---ccc-c-------cCCEEEECCCCHHHCEEEEEEEeccCC
Confidence 44556788999999999964 68889999998865421 111 1 256899999999999999999999996
Q ss_pred CCCCCceeEEEE
Q psy15235 291 RNSQPNEAFVYV 302 (323)
Q Consensus 291 ~~~~~~~~~~~l 302 (323)
. ....+.|
T Consensus 77 ~----~~~~~~l 84 (85)
T cd05754 77 T----DEATATL 84 (85)
T ss_pred e----EeEEEEE
Confidence 5 5555544
No 137
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.27 E-value=2.7e-11 Score=78.12 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=56.1
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF 201 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 201 (323)
|+.+.|.|.+.+.| .+.|.|+++|..+...... .+.......|.|.+++.+|+|.|+|.| .|..+. ....+.|
T Consensus 1 G~~~~l~C~~~g~P---~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A-~N~~G~--~~~~~~l 73 (76)
T cd04978 1 GETGRLDCEAEGIP---QPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNA-SNVHGY--LLANAFV 73 (76)
T ss_pred CCeEEEEEEceeeC---CCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEE-EccCCe--EEEeEEE
Confidence 68899999999988 7899999999888652111 122355678999999999999999999 777433 4444444
Q ss_pred EE
Q psy15235 202 DV 203 (323)
Q Consensus 202 ~v 203 (323)
.|
T Consensus 74 ~V 75 (76)
T cd04978 74 HV 75 (76)
T ss_pred EE
Confidence 44
No 138
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.27 E-value=6.1e-11 Score=75.52 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred EEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 223 LRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 223 ~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++|+|.. .++|++.++||+++..+..... . ..........++|.|.....+|.+.|+|.|.|..+. .+..+....
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~-~~~~~~~~~ 77 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV-SQKKQTQYS 77 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc--c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC-CCCeeEEEE
Confidence 6899999 5679999999999999853210 0 000111124578999999999999999999999987 244566666
Q ss_pred EEE
Q psy15235 302 VRV 304 (323)
Q Consensus 302 l~v 304 (323)
|.|
T Consensus 78 l~V 80 (80)
T cd05885 78 LDV 80 (80)
T ss_pred EeC
Confidence 543
No 139
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=2e-11 Score=80.73 Aligned_cols=72 Identities=28% Similarity=0.413 Sum_probs=56.7
Q ss_pred eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeee-ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYF-RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+.+|+.+.|.|.. .|.|.+.+.|++++..+. ..+.+..+.. ..+.|.|.+++.+|+|+|+|.|.|....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~------~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ------TNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC------CCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3567889999999988 788999999999987532 1223333331 3688999999999999999999998744
No 140
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.27 E-value=3.9e-11 Score=75.24 Aligned_cols=60 Identities=15% Similarity=0.387 Sum_probs=47.9
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
|+.++|.|.+.|.| .|.|.|+|++.++.. ..++......|.|.++ .|+|.|+|.| .|..+
T Consensus 1 G~~v~L~C~a~G~P---~P~v~W~k~g~~l~~----~~~~~~~~~~L~i~~~--~d~G~Y~C~A-~N~~G 60 (69)
T cd05739 1 GGSVNLTCVAVGAP---MPYVKWMKGGEELTK----EDEMPVGRNVLELTNI--YESANYTCVA-ISSLG 60 (69)
T ss_pred CCeEEEEEEeeecC---CCEEEEEECCEECCC----ccceecCccEEEEecc--ccCeeEEEEE-EeCCC
Confidence 67899999999998 899999999988765 3344434457888887 4789999999 77743
No 141
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.26 E-value=3e-11 Score=80.70 Aligned_cols=71 Identities=24% Similarity=0.473 Sum_probs=53.7
Q ss_pred eeEEecCCcEEEEEEeec-----CCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTS-----PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
...+.+|+++.|.|.+.+ .| .+.|.|||++..+........++......|.|.++..+|+|.|+|.+ .|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p---~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~-~N~~ 83 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSP---GLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVV-RNST 83 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCC---CceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEE-cCCC
Confidence 345678999999999988 45 67999999987643211113444444568999999999999999999 7774
No 142
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.26 E-value=2.6e-11 Score=77.36 Aligned_cols=61 Identities=31% Similarity=0.509 Sum_probs=48.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--e---ceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--Q---SKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~---~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
|.|.|.+.|.| .|.|.|+|++..+... ..++. . ....|.|.++..+|+|.|+|.| .|..+.
T Consensus 1 v~l~C~v~G~P---~P~v~W~k~~~~l~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~ 66 (75)
T cd05893 1 VRLECRVSGVP---HPQIFWKKENESLTHN---TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA-KNEAGI 66 (75)
T ss_pred CEEEEEEeEec---CCEEEEEECCEECCCC---CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEE-EcCCCE
Confidence 57999999999 8999999999888641 23443 1 1236999999999999999999 787443
No 143
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.26 E-value=9.1e-11 Score=78.34 Aligned_cols=81 Identities=19% Similarity=0.430 Sum_probs=58.3
Q ss_pred eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEE
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
+.|....+..|+++.|.|.+.|.| . .+.|++ ++..+.. ..++. .....|+|.+++.+|+|.|+|.|
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p---~-~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP---K-DISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVA 76 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC---C-eEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence 455556688899999999999986 4 899998 5655543 22322 23468999999999999999999
Q ss_pred EcCCCCCCCCceeeeeE
Q psy15235 186 IDPKSTNTTPLAQADFD 202 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~ 202 (323)
.|..+. ....++.|+
T Consensus 77 -~N~~g~-~~~~sv~l~ 91 (92)
T cd04977 77 -TDAKGT-ESEATVNLK 91 (92)
T ss_pred -EcCCCC-cceeEEEEE
Confidence 776333 234444443
No 144
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.26 E-value=1.2e-10 Score=77.01 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=67.4
Q ss_pred eeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
...+.+|+.+.|.|.+.++|+|+ +.|.+++..+.+............+....+.|.+..++.+|.|.|+|.|.|..+.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~- 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS- 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe-
Confidence 45688999999999999999997 9999988776543332211111122346799999999999999999999999944
Q ss_pred CCCceeEEEEEEc
Q psy15235 293 SQPNEAFVYVRVK 305 (323)
Q Consensus 293 ~~~~~~~~~l~v~ 305 (323)
.+.++.|.|+
T Consensus 91 ---~s~tF~l~v~ 100 (101)
T cd05860 91 ---ASVTFNVYVN 100 (101)
T ss_pred ---EEEEEEEEEe
Confidence 7777777764
No 145
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=5.6e-11 Score=78.31 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=57.0
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
+++.|.|.+.+.|.. ...+.|+++|..+..... ..++. .....|.|.+++.+|+|.|+|.+ .|..+ ....
T Consensus 1 e~~~L~C~~~g~P~p-~i~~~W~~~g~~i~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~g--~~~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTL-DLTFTWSFNGVPIDFDKD-GGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTA-QTVVD--SLSA 75 (85)
T ss_pred CcEEEEEEEecCCCC-CeEEEEEECCeEeeccCC-CccEEEEecccccceEEEccCCHHhCeeeEEEE-ecCCC--cEEE
Confidence 468999999988721 237899999988754111 11111 34678999999999999999999 77643 3566
Q ss_pred eeeeEEEecc
Q psy15235 198 QADFDVIMKP 207 (323)
Q Consensus 198 ~~~l~v~~~p 207 (323)
...|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 7777777654
No 146
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.25 E-value=4.7e-11 Score=76.37 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=48.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.|.|.+.|.| .|.+.|+|++..+... ..++. .....|.|.+++.+|+|.|+|.+ .|..+.
T Consensus 1 v~L~C~v~G~P---~P~v~W~k~~~~i~~~---~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~ 66 (75)
T cd05744 1 VRLECRVSAIP---PPQIFWKKNNEMLTYN---TDRISLYQDNCGRICLLIQNANKEDAGWYTVSA-VNEAGV 66 (75)
T ss_pred CEEEEEEeecC---CCeEEEEECCEECCCC---CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE-EcCCCc
Confidence 47999999999 7999999999888641 23333 12236999999999999999999 787443
No 147
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.24 E-value=3.5e-11 Score=76.20 Aligned_cols=70 Identities=13% Similarity=0.349 Sum_probs=51.7
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
+.|.|.+.|.| .|.+.|++++..+... ..........|.|.+++.+|+|.|+|.| .|..+. ....+.|.|
T Consensus 1 ~~L~C~~~G~P---~P~v~W~k~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~--~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLP---TPEVHWDRIDGPLSPN---RTKKLNNNKTLQLDNVLESDDGEYVCTA-ENSEGS--ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEec---CCeEEEEECCcCCCCC---ceeEEcCCCEEEEcccCHHhCEEEEEEE-EcCCCe--EEEEEEEEE
Confidence 47899999998 7899999998776541 1122245678999999999999999999 787443 334444443
No 148
>KOG3515|consensus
Probab=99.24 E-value=1e-10 Score=103.26 Aligned_cols=271 Identities=17% Similarity=0.206 Sum_probs=156.9
Q ss_pred ceEEecCCcEEEEEE----eccCceEEEEEcCccceeecc-----CcceEEEeeeeCCeEEEEEeecccCcceEEEeecc
Q psy15235 30 DTEIMEGAPINISCI----LTIFEQVKWQLNGRNINQSSV-----DSGFAATANLTEDNFKYSIHEAILESGYVQSSLFI 100 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~----~~~~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~ 100 (323)
.....++..+.+.|. +.+.+.++|..++........ ..............+++...+..+.|.|+|.+.+.
T Consensus 106 e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 106 EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 455678999999995 345689999997643322210 00000011122445566666666699999999874
Q ss_pred C---Cccceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ec
Q psy15235 101 P---RMNAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS 164 (323)
Q Consensus 101 ~---~~~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~ 164 (323)
. ........+.+ ....+.+.+|+.+.|.|.+.+..| ...+.|+++............+-. .-
T Consensus 186 ~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P--~~~~~w~~~s~~~~~~sl~~~~~sg~~v 263 (741)
T KOG3515|consen 186 NSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNP--SQQQTWYKDSRPQSESSLLSQEPSGDTV 263 (741)
T ss_pred cCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCc--chhhhhccccccchhhhcccCCCCCCcc
Confidence 2 22111111111 122244778999999998877766 689999999877655100111111 11
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEE
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLV-VGSPPPTVEWRI 241 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~ 241 (323)
...+.+..-..++.-...|.+ .|. ......+.+..+|.-. .+.......|++..+.|.. .++|.+.+.|++
T Consensus 264 ~~~~~~~~~r~~~~~~~kc~a-~n~-----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~ 337 (741)
T KOG3515|consen 264 SSTLVLRVGRQDLQAQLKCKA-SNL-----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYK 337 (741)
T ss_pred cccccccccccchhhhhhccc-cCc-----cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeec
Confidence 222333333333444678999 662 2223334444443222 2233447789999999998 456888999999
Q ss_pred CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
+............-. ..........+.+......|.|.|+|.|.|.... .+....+.|.+..+|..+
T Consensus 338 ~~~~~~~~~~~~~~t-~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~--~~sss~~~l~~l~~p~~L 404 (741)
T KOG3515|consen 338 DTKMPKGSQKASSKT-SNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA--HSSSSSFLLPVLPSPAFL 404 (741)
T ss_pred cCcccccccCcccCC-CcccceeeEEeeecccchhcCceEEccccccccc--cccccceeccccCCchhh
Confidence 665544222211111 1222233455666678888999999999998866 556666677666665543
No 149
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.24 E-value=4.8e-11 Score=78.23 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=52.2
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
....|+.+.|.|.+.+.| .+.+.|++++..+.. ..... .....|.|.++..+|+|.|+|.+ .|..
T Consensus 5 ~~~~G~~v~L~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~ 71 (82)
T cd05856 5 ARPVGSSVRLKCVASGNP---RPDITWLKDNKPLTP----TEIGESRKKKWTLSLKNLKPEDSGKYTCHV-SNRA 71 (82)
T ss_pred eccCCCeEEEEEEeeEeC---CCcEEEEECCcCCcC----CccceecCceEEEEEccCChhhCEEEEEEE-EcCC
Confidence 356799999999999988 689999999987754 22221 34468999999999999999999 7773
No 150
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.23 E-value=6.1e-11 Score=75.81 Aligned_cols=62 Identities=11% Similarity=0.291 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 127 l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
|.|.+.|.| .|+|+|+|+|.++........++. .....|.|.++..+|+|.|+|.| .|..|.
T Consensus 3 i~~~v~G~P---~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A-~N~~G~ 69 (79)
T cd05855 3 IPFTVKGNP---KPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVA-KNEYGE 69 (79)
T ss_pred EEEEEeEeC---CCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEE-EcCCcc
Confidence 789999999 899999999999976211111111 23467999999999999999999 788543
No 151
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.23 E-value=1.4e-10 Score=75.57 Aligned_cols=79 Identities=32% Similarity=0.520 Sum_probs=60.1
Q ss_pred ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235 207 PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286 (323)
Q Consensus 207 p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 286 (323)
|.+..+. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...+.+.++..+|.|.|+|.|.
T Consensus 2 P~l~~~~-~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------------~~~~~~~~~~~~~~g~y~C~~~ 65 (80)
T PF13895_consen 2 PVLSSSP-QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------------QNGLFIPNVSPEDSGNYTCRAS 65 (80)
T ss_dssp -EEEEES-SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------------SSEEEESSEEGGGTEEEEEEEE
T ss_pred cEEEccc-eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------------eeeeeeeeeccccCEEEEEEEE
Confidence 5555444 56889999999999999888999999998777522 1227778899999999999999
Q ss_pred ecccCCCCCceeEEEEEE
Q psy15235 287 NVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 287 n~~g~~~~~~~~~~~l~v 304 (323)
+..+. ..+..+.|.|
T Consensus 66 ~~~~~---~~s~~~~v~V 80 (80)
T PF13895_consen 66 NGSGS---NTSTSVNVTV 80 (80)
T ss_dssp ETTEE---EEEEEEEEEE
T ss_pred eCCCC---eEeeeEEeeC
Confidence 96532 3556666654
No 152
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=6e-11 Score=77.41 Aligned_cols=65 Identities=32% Similarity=0.403 Sum_probs=53.2
Q ss_pred eeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+.+|++++|.|.+. +.+.+.+.|++++..+... . ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~-------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------H-------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------C-------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 44688999999999995 4566789999999765311 0 2578999999999999999999999976
No 153
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=8.1e-11 Score=78.44 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=57.0
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeecccc----ccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA----TELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 196 (323)
|+.++|.|.+.+.| .+.+.|++++..+... .....++. .....|.|.+++.+|+|.|+|.+ .|..+. ..
T Consensus 1 G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~--~~ 74 (90)
T cd05726 1 GRTVTFQCEATGNP---QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQT-LNVAGS--IL 74 (90)
T ss_pred CCEEEEEEECCccC---CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEE-EcCCCc--eE
Confidence 68899999999988 7899999988643210 01134554 34568999999999999999999 787443 45
Q ss_pred eeeeeEEEe
Q psy15235 197 AQADFDVIM 205 (323)
Q Consensus 197 ~~~~l~v~~ 205 (323)
..+.|.|..
T Consensus 75 ~~~~l~V~~ 83 (90)
T cd05726 75 TKAYLEVTD 83 (90)
T ss_pred EEEEEEEee
Confidence 556666654
No 154
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.23 E-value=6.3e-11 Score=75.70 Aligned_cols=72 Identities=24% Similarity=0.473 Sum_probs=52.6
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
++|.|.+.|.| .+.|.|++++.++.. ....++. .....|.|.+++.+|+|.|+|.+ .|..+. ..+..+.|.|
T Consensus 1 a~l~C~~~G~P---~p~v~W~k~~~~~~~--~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a-~N~~G~-~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNP---DPEITWFKDFLPVDT--TSNGRIKQLRSGALQIENSEESDQGKYECVA-TNSAGT-RYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEec---CCEEEEEECCEECcc--CCCCCEEEcCCcEEEECCCChhhCEEEEEEE-ECCCCc-eEcccEEEEE
Confidence 47999999998 799999999987753 1134554 44567999999999999999999 677443 2233444433
No 155
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.23 E-value=1.2e-10 Score=77.47 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=59.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.+....+.+|++++|.|.+.+. + +.|.|++++..+.. .++. .....|.|.+++.+|+|.|.|.| .|..
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~---p~i~W~kng~~l~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~ 78 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-A---TYIWWVNNGSLLVP-----PRLQLSNDNRTLTFNNVTRSDTGHYQCEA-SNEV 78 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-C---CEEEEEECCEECCC-----CCEEEeCCCCEEEECcCChhhCEEEEEEE-EcCC
Confidence 3444568889999999999987 3 68999999988754 2333 34568999999999999999999 7774
Q ss_pred CCCCCceeeeeEE
Q psy15235 191 TNTTPLAQADFDV 203 (323)
Q Consensus 191 ~~~~~~~~~~l~v 203 (323)
+. ..+..+.|.|
T Consensus 79 G~-~~S~~~~L~V 90 (91)
T cd05740 79 SN-MTSDPYILNV 90 (91)
T ss_pred CC-EEeeeEEEEe
Confidence 33 2333444443
No 156
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.22 E-value=5.2e-11 Score=75.05 Aligned_cols=58 Identities=26% Similarity=0.584 Sum_probs=46.9
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
++|.|.+.|.| .+.+.|++++..+.. .++. .....|.|.+++.+|+|.|+|.+ .|..+
T Consensus 1 v~l~C~~~g~P---~p~v~W~k~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G 59 (69)
T cd05725 1 VEFQCEVGGDP---VPTVLWRKEDGELPK-----GRAEILDDKSLKIRNVTAGDEGSYTCEA-ENMVG 59 (69)
T ss_pred CEEEEECccCC---CCEEEEEECCccCCC-----CcEEEeeCCEEEECcCChhHCEEEEEEE-EcCCC
Confidence 47999999988 789999999876643 3333 45568999999999999999999 77743
No 157
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.21 E-value=1.4e-10 Score=76.71 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=56.2
Q ss_pred CceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
|....+.+|+++.|.|.+ .+.| .+.+.|++++..+... ..++. .....|.|.+++.+|+|.|+|.+ .|..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G 75 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNLD---NERVRIVDDGNLLIAEARKSDEGTYKCVA-TNMVG 75 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCCC---CCCEEEccCCEEEEeECCcccCEEEEEEE-EeccC
Confidence 455667789999999998 5666 7899999999887651 22333 33568999999999999999999 77643
Q ss_pred C
Q psy15235 192 N 192 (323)
Q Consensus 192 ~ 192 (323)
.
T Consensus 76 ~ 76 (86)
T cd05724 76 E 76 (86)
T ss_pred c
Confidence 3
No 158
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.21 E-value=1.6e-10 Score=77.55 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=56.7
Q ss_pred eeeeCCceeEEecC---CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEE
Q psy15235 109 NYDIEPKYKVFEYR---VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCR 184 (323)
Q Consensus 109 ~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~ 184 (323)
.+...|....+.+| +.++|.|.+.+.| .+.|+|+++|..+... ...++......|.|.++. ..|+|.|+|.
T Consensus 3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P---~p~i~W~~~g~~l~~~--~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 3 VFEEQPSSLLFPEGSPEEKVTLGCRARASP---PATYRWKMNGTEIKFA--PESRYTLVAGNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred eeEECCCCEEecCCCCCCeEEEEeEceeCC---CCEEEEEECCEECccC--CCceEEEECCeEEEccCCccCcCEEEEEE
Confidence 34446666665555 5799999999988 7899999999988641 123444445678888765 5899999999
Q ss_pred EEcCCCC
Q psy15235 185 LIDPKST 191 (323)
Q Consensus 185 ~~~~~~~ 191 (323)
| .|..+
T Consensus 78 A-~N~~G 83 (94)
T cd05850 78 A-INRCG 83 (94)
T ss_pred E-EcCcC
Confidence 9 77744
No 159
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=1.2e-10 Score=74.55 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=49.2
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
|+.+.|.|.+.+.| .+.+.|++ ++..+.. ..+.. .....|.|.++..+|.|.|+|.+ .|..+
T Consensus 1 G~~~~l~C~~~g~P---~p~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~G 64 (74)
T cd05764 1 GQRATLRCKARGDP---EPAIHWISPDGKLISN----SSRTLVYDNGTLDILITTVKDTGSFTCIA-SNAAG 64 (74)
T ss_pred CCeEEEEEEccCcC---CCEEEEEeCCCEEecC----CCeEEEecCCEEEEEECChhhCEEEEEEE-ECCCC
Confidence 68899999999987 78999997 5665544 33333 44568999999999999999999 78743
No 160
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.21 E-value=5.1e-11 Score=78.61 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=59.3
Q ss_pred eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeeccc
Q psy15235 214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVAT 290 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g 290 (323)
...+.+|+.+.|.|.. .|+|.|.+.|+.++......+.|+.+. ..+.|.|.+++.+|+| .|.|.|.|...
T Consensus 12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~-------~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG-------QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC-------CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4678899999999984 999999999998776544456677666 4789999999999999 79999999873
No 161
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.21 E-value=1.6e-10 Score=77.40 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=50.9
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEEEcCCCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRLIDPKST 191 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~ 191 (323)
+|+.++|.|.+.|.| .+.|+|+++|..+... ...++......|.|.++. .+|+|.|+|.| .|..+
T Consensus 18 ~g~~v~l~C~~~G~P---~P~i~W~k~g~~l~~~--~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A-~N~~G 83 (94)
T cd05848 18 DEKKVILNCEARGNP---VPTYRWLRNGTEIDTE--SDYRYSLIDGNLIISNPSEVKDSGRYQCLA-TNSIG 83 (94)
T ss_pred CCCEEEEEEEeeecC---CCEEEEEECCeECccC--CCceEEeeCCeEEEccCCccCcCEEEEEEE-EcCCC
Confidence 478999999999998 7899999999988641 122344345678888874 68999999999 77754
No 162
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.20 E-value=1.3e-10 Score=76.32 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=55.6
Q ss_pred CCeEEEEEEEecCCC--CcEEEEECCeeeeccC--CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 220 GEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQ--GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 220 g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
|+++.|.|.+.+.+. ..+.|.+++....... ....... .......++|+|.+++.+|+|.|+|.|.|..|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~---- 75 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMI---- 75 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceE----
Confidence 789999999987654 4789998776432110 1000000 011124689999999999999999999998865
Q ss_pred ceeEEEEEEc
Q psy15235 296 NEAFVYVRVK 305 (323)
Q Consensus 296 ~~~~~~l~v~ 305 (323)
......|.|.
T Consensus 76 ~~~~t~~~V~ 85 (86)
T cd05862 76 AKNSTIVIVH 85 (86)
T ss_pred ecccEEEEEe
Confidence 6666677664
No 163
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.20 E-value=2.8e-10 Score=76.29 Aligned_cols=75 Identities=21% Similarity=0.425 Sum_probs=55.1
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+.+..+.+|+++.|.|.+.+.|.+.+.|++.+..+. ..++++.... . .....+|+|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~--~-~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR--A-SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE--C-CCCcEEEEECcCCcccCEEEEEE
Confidence 346778999999999999999999999986432211 1234444321 1 11357899999999999999999
Q ss_pred Eeecc
Q psy15235 285 GNNVA 289 (323)
Q Consensus 285 a~n~~ 289 (323)
+.+..
T Consensus 81 ~~t~~ 85 (95)
T cd07701 81 LFTMP 85 (95)
T ss_pred eEeec
Confidence 99854
No 164
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.20 E-value=4.3e-10 Score=76.23 Aligned_cols=88 Identities=9% Similarity=0.084 Sum_probs=56.9
Q ss_pred ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQS 96 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~ 96 (323)
+.+..+.++.+.+|++++|.|. +.|.|.+.|+++ +..+..........+......+...|.|.+++ |+|.|+|.
T Consensus 3 p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 82 (98)
T cd05870 3 PHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCE 82 (98)
T ss_pred CEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEE
Confidence 3566677889999999999999 456789999994 33332211111112222333344566666665 49999999
Q ss_pred eeccCCccceeeee
Q psy15235 97 SLFIPRMNAITGNY 110 (323)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (323)
+.|..+.......+
T Consensus 83 A~N~~G~~~~~~~l 96 (98)
T cd05870 83 AASRIGGHQKSMYL 96 (98)
T ss_pred EeccCCcceeEEEE
Confidence 99988876544433
No 165
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.19 E-value=9.3e-11 Score=77.63 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=61.2
Q ss_pred eEEeeCCeEEEEEEE-ecC----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 215 LTVIEGEKLRLECLV-VGS----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~-~g~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..+..|.+..|.|.- .++ +.+++.||+|+..+.....++.... ....|.|.++..+|+|.|+|.|.+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~------~~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK------GSTYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC------CCCEEEEEEcChhhCEEEEEEEEEee
Confidence 345678899999974 333 5678999999998865544444321 24579999999999999999999997
Q ss_pred cCCCCCceeEEEEEEc
Q psy15235 290 TRNSQPNEAFVYVRVK 305 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~ 305 (323)
|...-...+.+.|.|.
T Consensus 79 ~g~~y~vtr~~~l~v~ 94 (95)
T cd05897 79 EGKKYNITRIIKLRIV 94 (95)
T ss_pred CCEEEEEEEEEEEEEc
Confidence 5533345555565543
No 166
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.19 E-value=1.7e-10 Score=71.30 Aligned_cols=63 Identities=27% Similarity=0.536 Sum_probs=50.7
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+|+++.|.|.+.+.|.+.+.|++++..+. . ...... ....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-C-CCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47899999999888889999999988775 1 111111 367899999999999999999998763
No 167
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.19 E-value=3.4e-10 Score=76.54 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=58.1
Q ss_pred ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235 23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL 98 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~ 98 (323)
+.|.......+.+|+++.|.|. +.|.+.+.|++++..+..........+..........|.|.+++ |+|.|+|.+.
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 82 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEAS 82 (96)
T ss_pred ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEE
Confidence 4455566788999999999999 45678999999886554321111111222223344567777665 4999999999
Q ss_pred ccCCccceeee
Q psy15235 99 FIPRMNAITGN 109 (323)
Q Consensus 99 ~~~~~~~~~~~ 109 (323)
|..+.......
T Consensus 83 N~~G~~~~s~~ 93 (96)
T cd05732 83 NRIGGDQQSMY 93 (96)
T ss_pred eCCCCcEEEEE
Confidence 98887654443
No 168
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.19 E-value=1.2e-10 Score=75.35 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=47.0
Q ss_pred EEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----------eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----------QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 126 ~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
.|.|.+.|.| .|.|+|+|+|..+.. ..+.. .....|.|.+++.+|+|.|+|.| .|..|.
T Consensus 2 ~i~~~v~G~P---~P~v~W~k~g~~i~~----~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A-~N~~G~ 71 (81)
T cd04971 2 CIPFTVRGNP---KPTLTWYHNGAVLNE----SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVA-SNEYGQ 71 (81)
T ss_pred eEEEEeEeeC---CCcEEEEECCEECcC----CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEE-EeCCCC
Confidence 3789999999 799999999999876 22211 12457999999999999999999 787443
No 169
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.18 E-value=2.7e-10 Score=74.61 Aligned_cols=79 Identities=18% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
|++++|.|.+.+.+ .+.+.|+++++..........+.. .....|.|.+++.+|+|.|.|.+ .+.........
T Consensus 1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a-~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAA-HESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEE-EECccCcceeE
Confidence 78999999999977 789999987654322000001111 33578999999999999999999 66543335566
Q ss_pred eeeeEEE
Q psy15235 198 QADFDVI 204 (323)
Q Consensus 198 ~~~l~v~ 204 (323)
++.|+|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 6676664
No 170
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.17 E-value=3.3e-10 Score=73.82 Aligned_cols=67 Identities=27% Similarity=0.488 Sum_probs=54.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
+|+...+..|+++.|.|.+.+ + .++|.|+++|.++... ..++......|.|.+++.+|+|.|+|.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~~i~~~---~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~ 68 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-N---LARVVWKFDGKVLTPE---SAKYLLYRDGLLIFNASEADAGRYQCLSV 68 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-C---CCeEEEEECCEECCCC---CceEEEECCcEEEeCCCHHHCEEEEEEEE
Confidence 356667889999999999754 4 5799999999998761 14555455679999999999999999994
No 171
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=1.7e-10 Score=74.06 Aligned_cols=72 Identities=28% Similarity=0.431 Sum_probs=50.7
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD 202 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 202 (323)
+.|.|.+.|.| .|.++|+|++...... ....++. .....|.|.+++.+|+|.|.|.| .|..+. ....+.|.
T Consensus 1 a~l~C~~~G~P---~P~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~N~~G~--~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHP---TPQIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDTGVYSCTA-QNTAGS--ISANATLT 73 (75)
T ss_pred CEeEeeccccc---CCEEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccCEEEEEEE-EcCCCE--EEeeEEEE
Confidence 47899999988 7899999988643220 1123333 34468999999999999999999 787433 44444444
Q ss_pred E
Q psy15235 203 V 203 (323)
Q Consensus 203 v 203 (323)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 4
No 172
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.16 E-value=4.9e-10 Score=76.46 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=54.4
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-cC-cEEeceeEE---EEe--eeecCCCee
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-SG-RLTQSKDSI---TIR--KTTVDDAGQ 180 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-~~-~~~~~~~~l---~i~--~~~~~d~G~ 180 (323)
|.+...|....+.+|+.+.|.|.+.+.| .+.+.|+|+|..+...... .. +.......+ .+. .+..+|+|.
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRP---TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCC---CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 3444566677788999999999999988 7899999999887541110 11 111112222 222 235789999
Q ss_pred EEEEEEcCCCCC
Q psy15235 181 YSCRLIDPKSTN 192 (323)
Q Consensus 181 y~C~~~~~~~~~ 192 (323)
|+|.+ .|..+.
T Consensus 79 Y~C~a-~N~~G~ 89 (100)
T cd07693 79 YVCVA-HNSLGE 89 (100)
T ss_pred EEEEE-Eccccc
Confidence 99999 787544
No 173
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.16 E-value=1.2e-10 Score=74.00 Aligned_cols=60 Identities=18% Similarity=0.428 Sum_probs=46.8
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
+.|.|.+.|.| .+.+.|++++..+... ..........|.|.++..+|+|.|+|.| .|..+
T Consensus 1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G 60 (71)
T cd05731 1 LLLECIAEGLP---TPEISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTA-SNSLG 60 (71)
T ss_pred CEEEEEeeEec---CCeEEEEECCeECCCC---ceeEecCCCEEEECCCCHHHCEEEEEEE-EeCCc
Confidence 47899999988 7899999998876531 1112244568999999999999999999 77743
No 174
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.15 E-value=2.4e-10 Score=75.79 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=57.5
Q ss_pred eeEEecCCcEEEEEEeecCCCC--CCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
...+..|.+..|.|...+.... ..+.+.|||++.++.. ..+.......|.|.++..+|+|.|+|.+ .+..+..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~~~~~~~L~I~~v~~~DsG~YtC~~-~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKRFVKGSKLLIQNVTEEDAGNYTCKL-TFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccEEecCCEEEEeeCChhhCEEEEEEE-EecCCCE
Confidence 3457789999999987543210 0579999999998865 3333236678999999999999999999 6664443
Q ss_pred CCceeeee
Q psy15235 194 TPLAQADF 201 (323)
Q Consensus 194 ~~~~~~~l 201 (323)
....+..+
T Consensus 79 ~~~~t~t~ 86 (92)
T cd05757 79 QYNVTRTI 86 (92)
T ss_pred EEEEEEEE
Confidence 33333333
No 175
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.15 E-value=3.2e-10 Score=75.70 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=55.4
Q ss_pred eeeCCceeEEec---CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEE
Q psy15235 110 YDIEPKYKVFEY---RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRL 185 (323)
Q Consensus 110 ~~~~~~~~~~~~---g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~ 185 (323)
+...|...++.+ |..+.|.|.+.|.| .+.++|++++..+... ..++......|.|.++. .+|+|.|.|.|
T Consensus 4 f~~~P~~~~~~~~~~~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~~---~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 4 FEEQPIDTIYPEESTEGKVSVNCRARANP---FPIYKWRKNNLDIDLT---NDRYSMVGGNLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred EEECCCCEEecCCccCCeEEEeCcCccCC---CCEEEEEECCEEccCC---CCeEEEECCEEEECcCCcCCCCEEEEEEE
Confidence 333455444443 44799999999998 7899999999887431 33444445789998885 68999999999
Q ss_pred EcCCCCC
Q psy15235 186 IDPKSTN 192 (323)
Q Consensus 186 ~~~~~~~ 192 (323)
.|..+.
T Consensus 78 -~N~~G~ 83 (93)
T cd05849 78 -SNIYGK 83 (93)
T ss_pred -EeCcce
Confidence 777443
No 176
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.15 E-value=3.8e-10 Score=75.03 Aligned_cols=85 Identities=24% Similarity=0.342 Sum_probs=59.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
+....+..|+++.|.|.+.+ + .+.+.|++++..+........++......|.|.+++.+|+|.|.|.+ .+.. ..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~~~~-~~ 76 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-N---LASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQS-VEHG-FK 76 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-C---CceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEE-ecCc-cc
Confidence 44556788999999999877 5 57999999988765411111344444456999999999999999999 5553 23
Q ss_pred CCceeeeeEEE
Q psy15235 194 TPLAQADFDVI 204 (323)
Q Consensus 194 ~~~~~~~l~v~ 204 (323)
....++.|.|.
T Consensus 77 ~~~~~~~l~V~ 87 (89)
T cd04979 77 QTLATYSLNVL 87 (89)
T ss_pred eeEeEEEEEEe
Confidence 34555555553
No 177
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.15 E-value=4.5e-10 Score=75.67 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=54.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeee-----ecCCCeeEEEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKT-----TVDDAGQYSCRLI 186 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~-----~~~d~G~y~C~~~ 186 (323)
.|....+.+|+++.|.|.+.+.| .+.+.|+|+|..+.... ..+.. .....+.|.++ ..+|.|.|+|.+
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~~--~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a- 78 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLVS--DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA- 78 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCC---CCEEEEEECCeECcccc--CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE-
Confidence 55666677899999999999988 78999999999886511 11222 33445667665 578999999999
Q ss_pred cCC-CC
Q psy15235 187 DPK-ST 191 (323)
Q Consensus 187 ~~~-~~ 191 (323)
.|. .+
T Consensus 79 ~N~~~G 84 (95)
T cd05722 79 QNDSLG 84 (95)
T ss_pred ECCccC
Confidence 666 44
No 178
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.13 E-value=5.7e-10 Score=76.95 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=58.8
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeee-cCCCeeEEEEEEcCCCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTT-VDDAGQYSCRLIDPKST 191 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~ 191 (323)
.|..++|.|.+.|.| .+.+.|+++|..+... ..++. .....|.|.++. .+|.|.|+|.| .|..+
T Consensus 22 ~g~~v~L~C~a~G~P---~p~i~W~k~g~~l~~~---~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A-~N~~G 94 (109)
T cd05773 22 GSSDANLVCQAQGVP---RVQFRWAKNGVPLDLG---NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTA-HNSLG 94 (109)
T ss_pred CCCEEEEEEECcccC---CCEEEEEECCEECCCC---CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEE-EeCCc
Confidence 568899999999988 6899999999887531 22332 124679999987 58999999999 78843
Q ss_pred CCCCceeeeeEEEecc
Q psy15235 192 NTTPLAQADFDVIMKP 207 (323)
Q Consensus 192 ~~~~~~~~~l~v~~~p 207 (323)
. ....+.|.+..+|
T Consensus 95 ~--~~~~i~L~~~~~p 108 (109)
T cd05773 95 E--DSLDIQLVSTSRP 108 (109)
T ss_pred c--CcEEEEEEecCCC
Confidence 3 5667777776655
No 179
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.13 E-value=5.6e-10 Score=72.94 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=54.2
Q ss_pred eEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 222 KLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 222 ~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
.+.|.|.+.| +|.+.++|+++|..+.......... +.+. ...+.|.|.....+|.|.|+|.|.|.... .....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~--~~~~~ 76 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELL--KDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP--TGKET 76 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEe--cCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC--CCcEE
Confidence 3689999976 6888999999998875321111111 1111 23467888888888899999999998855 33566
Q ss_pred EEEEEE
Q psy15235 299 FVYVRV 304 (323)
Q Consensus 299 ~~~l~v 304 (323)
++.|.|
T Consensus 77 s~~l~v 82 (82)
T cd05759 77 SVTLDV 82 (82)
T ss_pred EEEEcC
Confidence 666643
No 180
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.12 E-value=5.4e-10 Score=71.89 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=52.9
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD 202 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 202 (323)
+.|.|.+.|.| .+.+.|+|++..+.. ....++. .....|.|.++..+|.|.|+|.+ .|..+. ....+.|.
T Consensus 1 ~~L~C~v~g~P---~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a-~N~~G~--~~~~~~l~ 72 (76)
T cd05736 1 ASLRCHAEGIP---LPRLTWLKNGMDITP--KLSKQLTLIANGSELHISNVRYEDTGAYTCIA-KNEAGV--DEDISSLF 72 (76)
T ss_pred CEeEeEeeecC---CCEEEEEECCEECCC--CCCccEEEeCCCCEEEECcCCcccCEEEEEEE-EcCCCC--cceEEEEE
Confidence 36899999988 789999999988765 1123333 34457999999999999999999 777443 44555555
Q ss_pred E
Q psy15235 203 V 203 (323)
Q Consensus 203 v 203 (323)
|
T Consensus 73 V 73 (76)
T cd05736 73 V 73 (76)
T ss_pred E
Confidence 4
No 181
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.12 E-value=1.1e-09 Score=73.70 Aligned_cols=75 Identities=23% Similarity=0.461 Sum_probs=54.1
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+....+.+|++++|.|.+.+.|.+.+.|++.+..+. ..+.++.... . ......|+|.+++.+|+|.|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN--F-SANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc--C-CCCeeEEEEccCCcccCEEEEEE
Confidence 345678899999999999888888999986433211 0123444421 1 11356899999999999999999
Q ss_pred Eeecc
Q psy15235 285 GNNVA 289 (323)
Q Consensus 285 a~n~~ 289 (323)
+.+..
T Consensus 81 ~~~~~ 85 (95)
T cd05717 81 LYTMP 85 (95)
T ss_pred EecCC
Confidence 99765
No 182
>KOG3515|consensus
Probab=99.11 E-value=6.2e-10 Score=98.43 Aligned_cols=184 Identities=19% Similarity=0.335 Sum_probs=124.8
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 196 (323)
-+..|+.|.|.|.+.++|| ...+.||+.+.... .++. .....|......++.-+.|.|++ .|. ......
T Consensus 18 ~~~~g~~v~l~C~v~~~pp--~~~~eW~h~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~c~a-~ns-~~~~~~ 87 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPP--EIDVEWYHSTSGEH------GRYATIADPTLVTTGDVRDTVAELNCRA-FNS-VGMPSR 87 (741)
T ss_pred hhccCCcceeeeecCCCCC--CcceEEEecCcccc------cccccccCCceeeecchhhhhhhhhhhh-ccc-ccCcee
Confidence 5778999999999999988 78999999876654 2222 45667888888888888999999 776 233455
Q ss_pred eeeeeEEEecceee-eeceeEEeeCCeEEEEEEE--ecCCCCcEEEEECCeeeeccCCeeeeecC--CCCC-CcceeEEE
Q psy15235 197 AQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV--VGSPPPTVEWRIGNDTYFRSQGRIKLSEH--PEKG-TANSVLQI 270 (323)
Q Consensus 197 ~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~--~g~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~L~i 270 (323)
....+.+.++|... .........+..+.+.|.+ .+.|.+.+.|..++............... .... ...+.+++
T Consensus 88 ~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~ 167 (741)
T KOG3515|consen 88 CPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQ 167 (741)
T ss_pred cceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceee
Confidence 56667777766443 2333455678899999977 34577789999988765433211111100 1111 23677889
Q ss_pred eecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235 271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 271 ~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~ 312 (323)
...+.++.|+|+|.|.|..-. .........+.+..+....+
T Consensus 168 ~v~Rka~~g~~tC~A~nr~s~-~l~~~~~~~i~v~~~~~~~~ 208 (741)
T KOG3515|consen 168 TVSRKADNGNYTCPANNRNSP-GLSFAKQLTIIVEAPCKGIG 208 (741)
T ss_pred EEEEecCCceeEcccccccCc-cccccceeEeecccccccce
Confidence 999999999999999995321 13355566666666555443
No 183
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.10 E-value=5.4e-10 Score=74.40 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=51.5
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEEC----CeeccccccccCcEE---------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKG----NKSITEATELSGRLT---------QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~----~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
|+.+.|.|.+.+.| .|.|.|+++ +..+........+.. .....|.|.+++.+|+|.|+|.| .|
T Consensus 1 G~~v~L~C~~~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N 76 (90)
T cd05858 1 GSTVEFVCKVYSDA---QPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLA-GN 76 (90)
T ss_pred CCeEEEEEEEecCC---CCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEE-Ee
Confidence 67899999999998 789999984 333322000000000 12357999999999999999999 78
Q ss_pred CCCCCCCceeeeeEE
Q psy15235 189 KSTNTTPLAQADFDV 203 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v 203 (323)
..+. ...++.|.|
T Consensus 77 ~~G~--~~~~a~L~V 89 (90)
T cd05858 77 SIGI--SHHSAWLTV 89 (90)
T ss_pred CCCc--ccceEEEEE
Confidence 8554 444444544
No 184
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.10 E-value=2.9e-10 Score=73.45 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=51.4
Q ss_pred EeeceEEecCCcEEEEEE--eccCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235 27 YFGDTEIMEGAPINISCI--LTIFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM 103 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~--~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~ 103 (323)
.|.++.+.+|+++.|+|. +.|.| .|+|+++|..+... .......|.+..+.|+|.|.|.+.|..+.
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----------~~~~~s~L~i~~~~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----------PAPSPSVLNVPGLNETSKFSCEAHNAKGV 72 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----------CCCCCCEEEEccccCCeEEEEEEEeccCc
Confidence 466788999999999999 55678 79999999877541 01122367777788899999999988764
Q ss_pred c
Q psy15235 104 N 104 (323)
Q Consensus 104 ~ 104 (323)
.
T Consensus 73 ~ 73 (81)
T cd05749 73 T 73 (81)
T ss_pred E
Confidence 3
No 185
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.10 E-value=1.1e-09 Score=72.64 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=56.3
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCe--eeec---cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee-c
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGND--TYFR---SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN-V 288 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n-~ 288 (323)
..+.+|+++.|.|.. +.|.|.+.|++.+. .... ...++... ...|.|.+++.+|+|.|+|.|.+ .
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--------~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--------ERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--------cCeEEEeeCChhHCEEEEEEEEccC
Confidence 356789999999996 47888999998432 2111 12333332 46699999999999999999985 4
Q ss_pred ccCCCCCceeEEEEEEcc
Q psy15235 289 ATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 289 ~g~~~~~~~~~~~l~v~~ 306 (323)
.+. ....++|.|..
T Consensus 77 ~~~----~~~~~~l~v~~ 90 (91)
T cd05871 77 FSQ----TLAKYTLHVIE 90 (91)
T ss_pred CeE----EEEEEEEEEec
Confidence 433 55677777753
No 186
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.10 E-value=8.1e-10 Score=73.49 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=51.7
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECC----eecccccccc---------CcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGN----KSITEATELS---------GRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
|+.++|.|.+.+.| .|.|+|+|++ ..+....... ..+......|.|.+++.+|+|.|+|.| .|
T Consensus 1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N 76 (90)
T cd04974 1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLA-GN 76 (90)
T ss_pred CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEe-ec
Confidence 67899999999999 8999999964 2221100000 000122357999999999999999999 88
Q ss_pred CCCCCCCceeeeeEE
Q psy15235 189 KSTNTTPLAQADFDV 203 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v 203 (323)
..+. ...++.|.|
T Consensus 77 ~~G~--~~~sa~L~V 89 (90)
T cd04974 77 SIGP--SHHSAWLTV 89 (90)
T ss_pred ccCc--ccCCEEEEe
Confidence 8554 444555554
No 187
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.09 E-value=5.5e-10 Score=72.91 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=47.3
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCe---ec-cccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK---SI-TEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~---~~-~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
|+.+.|.|.+.+.| .+.+.|++++. .+ ........++. .....|.|.++..+|+|.|.|.+ .|..+
T Consensus 1 G~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G 71 (81)
T cd05765 1 GETASFHCDVTGRP---PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTA-RNSGG 71 (81)
T ss_pred CCcEEEEeeccccC---CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEE-ecCCc
Confidence 68899999999988 78999999742 11 11001111222 34468999999999999999999 78743
No 188
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.09 E-value=3.5e-10 Score=70.14 Aligned_cols=63 Identities=29% Similarity=0.514 Sum_probs=44.6
Q ss_pred CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
|++++|.|.+ .+.+...+.|++++............. ........|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 666778999999987654322111111 01101123999999999999999987
No 189
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.09 E-value=5.8e-10 Score=72.75 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=51.2
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
+....+.+|++++|.|.+....+ ..++.|||+|..+.. ......|.|.+++.+|+|.|+|.+ .+..
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~-~~~~ 71 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSG-IIGS 71 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEE-EeCC
Confidence 44456889999999999865433 568999999976643 123467999999999999999999 5653
No 190
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.08 E-value=9.2e-10 Score=73.05 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=52.7
Q ss_pred EEeeCCeEEEEEEEecCCCCcEEEEECCeee-eccCCe------------eeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTY-FRSQGR------------IKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
.+.+|++++|.|.+.+.+.+.+.|++++... ....++ +.... .........|+|.+++.+|+|+|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~-~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR-NLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec-ccCCCCeEEEEECCCCHHHCEEEE
Confidence 4678999999999998888999999876332 211122 21111 000113567999999999999999
Q ss_pred EEEeeccc
Q psy15235 283 CHGNNVAT 290 (323)
Q Consensus 283 C~a~n~~g 290 (323)
|.+.|..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99999873
No 191
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.07 E-value=5.5e-10 Score=71.83 Aligned_cols=64 Identities=23% Similarity=0.587 Sum_probs=46.5
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
+.|+|.+.+..| .+.+.||++|..+........++. .....|.|.++..+|+|.|+|.+ .|..+
T Consensus 1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a-~N~~g 68 (76)
T cd05895 1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMV-SSKLG 68 (76)
T ss_pred CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEE-EeCCC
Confidence 479999876443 679999999988754111122222 34578999999999999999999 77743
No 192
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.06 E-value=1e-09 Score=72.07 Aligned_cols=75 Identities=19% Similarity=0.384 Sum_probs=52.0
Q ss_pred CCcEEEEEEeecC--CCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235 122 RVPFTLKCNVTSP--PPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT 194 (323)
Q Consensus 122 g~~v~l~C~~~~~--~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 194 (323)
|+.++|.|.+.+. + .+.+.|++++..+........+. ......|.|.+++.+|+|.|+|.+ .|..+.
T Consensus 1 Ge~~~L~C~~~g~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a-~n~~~~-- 74 (84)
T cd05742 1 GETLVLNCTVLTELNE---GVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAA-SSGTMD-- 74 (84)
T ss_pred CCeEEEEEEEEeCCCc---cEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEE-ccCCCc--
Confidence 7889999999998 5 78999998776543210001011 134568999999999999999999 777433
Q ss_pred CceeeeeE
Q psy15235 195 PLAQADFD 202 (323)
Q Consensus 195 ~~~~~~l~ 202 (323)
...+..|.
T Consensus 75 ~~~s~~v~ 82 (84)
T cd05742 75 QKESTKVN 82 (84)
T ss_pred eEEEEEEE
Confidence 34444443
No 193
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=3e-09 Score=72.06 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=54.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEE--------eceeEEEEeeeec-CCCeeEEE
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTV-DDAGQYSC 183 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~-~d~G~y~C 183 (323)
+....+..|+.+.|.|.+.+.| .+ .|.|++++..+.... ..++. .....|.|.++.. +|.|.|.|
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P---~P~~v~W~~~~~~i~~~~--~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C 82 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTP---PPDRIVWTWKENELESGS--SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC 82 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccC---CCCEeEEEECCEEccCCC--CCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence 4445578899999999999988 66 699999998776411 23443 1124799999998 45899999
Q ss_pred EEEcCCCCC
Q psy15235 184 RLIDPKSTN 192 (323)
Q Consensus 184 ~~~~~~~~~ 192 (323)
.| .|..+.
T Consensus 83 ~A-~N~~G~ 90 (98)
T cd05758 83 TA-WNSFGS 90 (98)
T ss_pred EE-EcCCCc
Confidence 99 787443
No 194
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.05 E-value=5e-10 Score=71.91 Aligned_cols=64 Identities=25% Similarity=0.612 Sum_probs=47.7
Q ss_pred EEEEEEeec-CCCCCCceEEEEECCeeccccccccC-cEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSG-RLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.|.|.+.+ .| .+.+.|++++..+........ ++. .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus 1 ~~l~C~~~g~~P---~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYP---SLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVV-ENILGN 68 (75)
T ss_pred CEEEEEccCCCC---CceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEE-EEcCCc
Confidence 468999999 66 789999999988865211110 111 34578999999999999999999 777443
No 195
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.05 E-value=2e-09 Score=72.14 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=50.0
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-c---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEE
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-A---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
+...+.+|++++|.|.+.+.+ .+.+.|++.+..+.. . ...++|+. .....|.|.+++.+|+|.|.|.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 445688999999999999887 789999874321100 0 01134543 24468999999999999999999
Q ss_pred E
Q psy15235 186 I 186 (323)
Q Consensus 186 ~ 186 (323)
.
T Consensus 82 ~ 82 (95)
T cd07701 82 F 82 (95)
T ss_pred E
Confidence 3
No 196
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.05 E-value=8.2e-10 Score=71.08 Aligned_cols=62 Identities=18% Similarity=0.408 Sum_probs=46.6
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeec----CCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTV----DDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~ 192 (323)
++|.|.+.|.| .++|+|+|++..+... ...++. .....|.|..+.. +|+|.|.|.| .|..+.
T Consensus 1 i~l~C~~~G~P---~P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A-~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNP---PPTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA-SNELGT 68 (77)
T ss_pred CEEEeeCcccC---CCeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEE-EcCCCc
Confidence 47899999998 7899999999887541 122333 4467888888753 6899999999 777543
No 197
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.04 E-value=1.3e-09 Score=72.67 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=62.1
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
+|.+...+...+.+|+.++|.|... .+...+.|+++|...... . .........+.|.+++.+|+|.|+|.+
T Consensus 2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~--~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~ 72 (91)
T cd05751 2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK--K------PPEPQNKAKFFIPSMKREHAGRYRCYY 72 (91)
T ss_pred CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc--c------cCCCceeEEEEccCCChhHCEEEEEEE
Confidence 4666666667788999999999885 567789999998753311 0 001124678999999999999999999
Q ss_pred eecccCCCCCceeEEEEEE
Q psy15235 286 NNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 286 ~n~~g~~~~~~~~~~~l~v 304 (323)
.+.... ....+..+.|.|
T Consensus 73 ~~~~~~-~S~~Sd~lel~V 90 (91)
T cd05751 73 RSGVAL-WSEPSDPLELVV 90 (91)
T ss_pred ECCCCc-cCCCCCcEEEEe
Confidence 986311 122344455554
No 198
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.03 E-value=3.3e-09 Score=70.78 Aligned_cols=73 Identities=19% Similarity=0.410 Sum_probs=52.6
Q ss_pred CCceeEEec---CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEEEcC
Q psy15235 113 EPKYKVFEY---RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRLIDP 188 (323)
Q Consensus 113 ~~~~~~~~~---g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~ 188 (323)
.|....+.. |..+.|.|.+.+.| .+.++|++++..+... ...++......|.|.++. .+|+|.|+|.| .|
T Consensus 7 ~p~~~~~~~~~~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a-~N 80 (91)
T cd04967 7 QPDDTIFPEESDEGKVSLNCRARGSP---PPTYRWLMNGTEIDDE--PDSRYSLVGGNLVISNPSKAKDAGRYQCLA-SN 80 (91)
T ss_pred CCCCEEccCCCCCCEEEEEEeeeEcC---CCEEEEEECCEECCCC--CCCCEEEECCEEEEecCCccCCCEEEEEEE-Ec
Confidence 444444333 46799999999987 7899999999887431 123444445678888876 48999999999 67
Q ss_pred CCC
Q psy15235 189 KST 191 (323)
Q Consensus 189 ~~~ 191 (323)
..+
T Consensus 81 ~~G 83 (91)
T cd04967 81 IVG 83 (91)
T ss_pred CCC
Confidence 643
No 199
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.03 E-value=4.2e-09 Score=70.34 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=51.3
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-c---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-A---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
...+..|+++.|.|.+.+.+ .+.|.|++++..+.. . .....++. .....|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cEEEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 35577899999999999987 789999998754311 0 00123433 235789999999999999999994
Q ss_pred c
Q psy15235 187 D 187 (323)
Q Consensus 187 ~ 187 (323)
.
T Consensus 83 t 83 (95)
T cd05882 83 T 83 (95)
T ss_pred e
Confidence 3
No 200
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.03 E-value=1.4e-08 Score=73.65 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=62.6
Q ss_pred EEEeecc--cCcceEEEeeccCCccceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 82 YSIHEAI--LESGYVQSSLFIPRMNAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 82 l~i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
|.|.+++ |+|.|+|.+.+..+.......+.+ .|.+.+ ...|+.+.|.|.+.+..|. ...|.|++++...
T Consensus 3 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~ 81 (139)
T cd05771 3 LTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL-DVQVEWTREPPGD 81 (139)
T ss_pred EEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC-CeEEEEEECCCCC
Confidence 4555554 599999999876555433333333 343332 2257889999999997652 3699999987542
Q ss_pred cc------ccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 152 TE------ATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 152 ~~------~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.. ... .++.+ .....|.+.....++.+.|+|.+ .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~-~~~s~L~v~~~~~~~g~~ytC~V-~H~ 130 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTY-SLSSHLTLEPGTEDAGATYTCRV-SHV 130 (139)
T ss_pred ccceeccCCeEecceEeCCCCCE-EEEEEEEecCCccCCCCEEEEEE-EcC
Confidence 11 000 01111 22345555544444566999999 665
No 201
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.02 E-value=3.5e-09 Score=69.79 Aligned_cols=65 Identities=23% Similarity=0.496 Sum_probs=51.3
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+..|+.++|.|.+.+.+ .+.+.|++++..+.. ..... .....|.|.++..+|.|.|.|.+ .+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~-~n~ 73 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNP---RPTITWLKDGKPFKK----EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV-ENK 73 (85)
T ss_pred eEecCCCcEEEEEEcCCCC---CCeEEEEECCEECcc----cCceeEEEccCcEEEEEEeECCcccCEEEEEEE-EEC
Confidence 3466799999999999887 679999999987754 22221 23457899999999999999999 666
No 202
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.01 E-value=1.4e-09 Score=69.85 Aligned_cols=61 Identities=13% Similarity=0.352 Sum_probs=44.7
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeec----CCCeeEEEEEEcCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTV----DDAGQYSCRLIDPKST 191 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~ 191 (323)
+.|.|.+.|.| .|+|+|+|++.++.... ..++. .....|.|..+.. .|+|.|+|.| .|..|
T Consensus 1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~~~--~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A-~N~~G 67 (77)
T cd05874 1 IVIQCEAKGKP---PPSFSWTRNGTHFDIDK--DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA-RNERG 67 (77)
T ss_pred CEEEeeCcccC---CCeEEEEECCeECCCcC--CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEE-EcCCC
Confidence 47999999998 89999999998874311 22232 3456788877764 3789999999 77643
No 203
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.01 E-value=6.2e-09 Score=66.34 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=52.1
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeecccccc--ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC-CCceeee
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-TPLAQAD 200 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~ 200 (323)
.+.|+|...+..| .+.|+||+++.++..... ..++.......|.|.....+|.+.|+|+| .|..... .......
T Consensus 1 ~~~L~C~s~~skP--~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A-~n~a~~~~~~~~~~~ 77 (80)
T cd05885 1 EVELTCLSPRSKP--AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEA-SHPALVSQKKQTQYS 77 (80)
T ss_pred CEEEEEeCCCccC--CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEE-EChhhCCCCeeEEEE
Confidence 3789999988766 789999999999865211 11111144567999999999999999999 6764432 2344444
Q ss_pred e
Q psy15235 201 F 201 (323)
Q Consensus 201 l 201 (323)
|
T Consensus 78 l 78 (80)
T cd05885 78 L 78 (80)
T ss_pred E
Confidence 4
No 204
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=1.3e-08 Score=66.99 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=61.3
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++.... .. ....|.|.++..+|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~- 76 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSR--SG--SNSTLTISNVTPEDSGTYTCAATNSSGS- 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEE--cC--CeeEEEEEeeccccCeEEEEEEEcCCCe-
Confidence 34567899999999998887889999998 66654 223444431 11 1478999999999999999999988755
Q ss_pred CCCceeEEEEEE
Q psy15235 293 SQPNEAFVYVRV 304 (323)
Q Consensus 293 ~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 77 ---~~~~~~l~V 85 (86)
T smart00410 77 ---ASSTTTLTV 85 (86)
T ss_pred ---EEEEEEEEE
Confidence 445566655
No 205
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=1.3e-08 Score=66.99 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=61.3
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++.... .. ....|.|.++..+|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~- 76 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSR--SG--SNSTLTISNVTPEDSGTYTCAATNSSGS- 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEE--cC--CeeEEEEEeeccccCeEEEEEEEcCCCe-
Confidence 34567899999999998887889999998 66654 223444431 11 1478999999999999999999988755
Q ss_pred CCCceeEEEEEE
Q psy15235 293 SQPNEAFVYVRV 304 (323)
Q Consensus 293 ~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 77 ---~~~~~~l~V 85 (86)
T smart00409 77 ---ASSTTTLTV 85 (86)
T ss_pred ---EEEEEEEEE
Confidence 445566655
No 206
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.00 E-value=1.5e-09 Score=69.68 Aligned_cols=74 Identities=34% Similarity=0.630 Sum_probs=49.8
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.|..........+..+.|.|.+.+.+ .+.+.|+ +.............. ..++|.|.++..+|.|.|+|.
T Consensus 1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~~~g~y~C~ 72 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSS-------SNSTLTISNVTRSDNGTYTCI 72 (75)
T ss_dssp ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEE-------EEEEEEESSCCGGGTEEEEEE
T ss_pred CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccc-------eeeEEEEccCCHHhCcEEEEE
Confidence 3555544444444444599999998876 7789999 222211111122222 478899999999999999999
Q ss_pred Eee
Q psy15235 285 GNN 287 (323)
Q Consensus 285 a~n 287 (323)
|.|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 987
No 207
>PHA03376 BARF1; Provisional
Probab=99.00 E-value=6e-08 Score=70.54 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=71.4
Q ss_pred ceEEecCCcEEEEEEecc-----CceEEEEEcC----ccc--------eeeccCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235 30 DTEIMEGAPINISCILTI-----FEQVKWQLNG----RNI--------NQSSVDSGFAATANLTEDNFKYSIHEAI--LE 90 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~~-----~~~v~W~~~g----~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~ 90 (323)
++.+..|+.+.|+|...| ...|.|+|.+ ... .......+..+.+-.+.+++.|.|.+++ |.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 577899999999999553 3589999942 111 1111222233333333578888887765 59
Q ss_pred cceEEEeeccCCccceeee--------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235 91 SGYVQSSLFIPRMNAITGN--------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148 (323)
Q Consensus 91 G~Y~C~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~ 148 (323)
|.|+|.+....+....... +.+...-..+..-+..++.|.+.++| .|.++|..+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP---~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcC---Cchheecccc
Confidence 9999999765433221111 22222111233356678999977777 8999998754
No 208
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.00 E-value=2.1e-09 Score=69.69 Aligned_cols=64 Identities=28% Similarity=0.502 Sum_probs=46.6
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeecccc---c-cccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEA---T-ELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~---~-~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
++|.|.+.|.| .|.+.|++++...... . ....++. .....|.|.++..+|+|.|.|.| .|..+.
T Consensus 1 v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~ 69 (79)
T cd05734 1 VTLNCSAEGYP---PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKV-SNDVGA 69 (79)
T ss_pred CEeEeeCeEeC---CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEE-EeCCCC
Confidence 57999999988 7899999964322110 0 1234444 45578999999999999999999 777543
No 209
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.99 E-value=1.1e-08 Score=67.86 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=56.3
Q ss_pred ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
.+..+.+|+++.|.|.+.+.....+.|++.+..+. ..+.|+.... .. ....+|+|.+++.+|.|.|.|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~--~~-~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN--FS-SNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe--CC-CCEEEEEECcCCcccCEEEEEEE
Confidence 45678899999999999887667788987764432 2456666552 11 24678999999999999999999
Q ss_pred eecc
Q psy15235 286 NNVA 289 (323)
Q Consensus 286 ~n~~ 289 (323)
....
T Consensus 82 ~t~p 85 (95)
T cd05881 82 YTDP 85 (95)
T ss_pred Eccc
Confidence 8754
No 210
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.99 E-value=4.3e-09 Score=69.89 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=57.0
Q ss_pred eEEeeCCeEEEEEEEe-----------cCCCCcEEEEECCeeeeccC------CeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235 215 LTVIEGEKLRLECLVV-----------GSPPPTVEWRIGNDTYFRSQ------GRIKLSEHPEKGTANSVLQIDEATMAD 277 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~-----------g~p~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~d 277 (323)
..+.+|+++.|.|... ......+.|+|++..+.... .|+... ...|.|.++..+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--------~~~Lwf~Pa~~eD 81 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--------EDSIWFRPAELQD 81 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--------CCEEEEEeCChhh
Confidence 5578899999999972 11234799999975544322 244333 6889999999999
Q ss_pred CeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 278 RGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
+|.|+|.+.|.... ....+.|.|
T Consensus 82 SG~Y~C~~rN~t~C----~~~~i~l~V 104 (104)
T cd05896 82 SGLYTCVLRNSTYC----MKVSMSLTV 104 (104)
T ss_pred CeEEEEEECCCCcc----eEEEEEEEC
Confidence 99999999998854 555655543
No 211
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.98 E-value=2.5e-09 Score=68.68 Aligned_cols=61 Identities=18% Similarity=0.367 Sum_probs=45.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeee----cCCCeeEEEEEEcCCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTT----VDDAGQYSCRLIDPKST 191 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~ 191 (323)
+.|.|.+.|.| .+.|+|+|++..+... ...++. .....|.|..+. .+|+|.|+|.| .|..+
T Consensus 1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A-~N~~G 67 (77)
T cd05875 1 IIIECEAKGNP---VPTFQWTRNGKFFNVA--KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA-RNNLG 67 (77)
T ss_pred CEEEEeccccC---CCEEEEEECCEEccCc--CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEE-Eeccc
Confidence 47899999998 8999999999876421 133333 345688888764 24699999999 77744
No 212
>PHA03376 BARF1; Provisional
Probab=98.96 E-value=2.3e-08 Score=72.63 Aligned_cols=125 Identities=16% Similarity=0.243 Sum_probs=75.3
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCe----ec---------cccccccCcEE----eceeEEEEeeeecCCCe
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK----SI---------TEATELSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~---------~~~~~~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
..+..|+.+.|+|............|.|+|++. .+ .....+.+++. .++.+|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 346679999999987632211267999999431 11 11112333333 56788999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-eeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-TLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~ 244 (323)
+|+|.+..+. . ....-.-+++..+-.+++.. ......-+..++.|.+.|+|.|.++|..+..
T Consensus 101 tY~C~fQkge--~-~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 101 NYLCRMKLGE--T-EVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred eEEEEEEcCC--C-ceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999994322 1 11111122222222232211 0111225678999998889999999997654
No 213
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.96 E-value=3.2e-09 Score=69.91 Aligned_cols=69 Identities=25% Similarity=0.481 Sum_probs=53.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.|....+.+|++++|.|.+.+..| .+.+.|++++..+.. +.......|.|.+++.+|+|.|.|.+ .|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~------~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~~ 75 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSP--AYTLVWTRVGGGLPS------RAMDFNGILTIRNVQLSDAGTYVCTG-SNML 75 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCC--CcEEEEEECCCcCCC------cccccCCEEEECCCCHHHCEEEEEEE-eccC
Confidence 566667889999999999876433 689999998866533 11233568999999999999999999 7764
No 214
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.94 E-value=6.8e-09 Score=63.91 Aligned_cols=61 Identities=31% Similarity=0.623 Sum_probs=48.9
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+|++++|.|.+.+.+ .+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+ .+.
T Consensus 1 ~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDP---VPNITWLKDGKPLPE----SNRLSASGSTLTIKSVSLEDSGEYTCVA-ENS 61 (63)
T ss_pred CCceEEEEeeCccCC---CCeEEEEECCEECCC----CCEEecCCcEEEEeeCCcccCEEEEEEE-ecC
Confidence 478999999987777 679999999887652 2233355678999999999999999999 654
No 215
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.92 E-value=7.4e-09 Score=68.53 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=53.4
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
....+.+|+.+.|.|......| .+.|.|++++.++... ....++. ..++.|.|.++..+|+|.|+|.| .+.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P--~p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A-~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYP--DLSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRGNYSCFV-SSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCC--CCEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCceeEEEE-Eec
Confidence 3455778999999998766554 7899999998754221 1122333 45789999999999999999999 665
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.90 E-value=2.1e-08 Score=66.49 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=47.3
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCe--eccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
....+|++++|.|.. +.| .+.+.||+.+. ..........++......|.|.++..+|+|.|+|.+ .+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a-~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSP---QASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTA-VEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCC---CceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEE-Ecc
Confidence 346789999999986 445 68999998432 211100113455444567999999999999999999 543
No 217
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.89 E-value=2.2e-08 Score=65.05 Aligned_cols=59 Identities=29% Similarity=0.610 Sum_probs=48.1
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+..|+.++|.|.+.+.+ ...+.|++++..+.. . ...+.+..+..+|.|.|+|.+ .+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~~---------~-~~~~~~~~~~~~~~g~y~C~~-~~~ 67 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNP---PPQVQWYKNGSPINS---------S-QNGLFIPNVSPEDSGNYTCRA-SNG 67 (80)
T ss_dssp SEEETTSEEEEEEEEESSS---SSEEEEEETTEEEEE---------E-SSEEEESSEEGGGTEEEEEEE-EET
T ss_pred eEEeCCCcEEEEEEEEccc---ceeeeeeeeeeeeee---------e-eeeeeeeeeccccCEEEEEEE-EeC
Confidence 4477899999999999877 679999999887764 1 122777889999999999999 554
No 218
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.89 E-value=1.5e-08 Score=67.29 Aligned_cols=72 Identities=24% Similarity=0.451 Sum_probs=50.8
Q ss_pred eEEecCCcEEEEEEeec------CC--CCCCceEEEEECCeeccccc--cc-cCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235 117 KVFEYRVPFTLKCNVTS------PP--PGDDYQIVWYKGNKSITEAT--EL-SGRLTQSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~------~~--~~~~~~i~W~~~~~~~~~~~--~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
..+.+|+++.|.|.... ++ ......+.|||++....... .+ ..|+......|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 44678999999998621 11 00034899999975443311 11 1366667789999999999999999999
Q ss_pred EcCC
Q psy15235 186 IDPK 189 (323)
Q Consensus 186 ~~~~ 189 (323)
.|.
T Consensus 90 -rN~ 92 (104)
T cd05896 90 -RNS 92 (104)
T ss_pred -CCC
Confidence 777
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.88 E-value=2.7e-08 Score=65.99 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=50.3
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----cccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
...+.+|++++|.|.+.+.. ...+.|++.+..+.. ....+.|+. ....+|+|.+++.+|+|.|.|.+.
T Consensus 6 nvtv~~G~ta~L~C~v~~~~---~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNND---DSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred ceEEcCCCcEEEEEEEccCC---ccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 34577899999999999876 567899876643210 011245555 345579999999999999999994
Q ss_pred c
Q psy15235 187 D 187 (323)
Q Consensus 187 ~ 187 (323)
.
T Consensus 83 t 83 (95)
T cd05881 83 T 83 (95)
T ss_pred c
Confidence 3
No 220
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.88 E-value=3.3e-08 Score=64.53 Aligned_cols=76 Identities=20% Similarity=0.496 Sum_probs=50.8
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeeccccccc-----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
.+.|.|.+.+..| .+.++|+++|.++...... .+........|.+.....+|.|.|+|.+ .|.........+
T Consensus 1 ~~~L~C~v~g~~P--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a-~n~~l~~~~~~s 77 (82)
T cd05759 1 PYNLTCRARGAKP--AAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRA-RNEALPTGKETS 77 (82)
T ss_pred CEEEEEEEeCccC--CCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEE-cCccCCCCcEEE
Confidence 3689999988644 5799999999877541110 0111122346778777777889999999 787655555555
Q ss_pred eeeE
Q psy15235 199 ADFD 202 (323)
Q Consensus 199 ~~l~ 202 (323)
++|.
T Consensus 78 ~~l~ 81 (82)
T cd05759 78 VTLD 81 (82)
T ss_pred EEEc
Confidence 5554
No 221
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.87 E-value=6.1e-09 Score=64.51 Aligned_cols=57 Identities=30% Similarity=0.658 Sum_probs=42.8
Q ss_pred CCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE--ec----eeEEEEeeeecCCCeeEEEEE
Q psy15235 122 RVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS----KDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 122 g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~----~~~l~i~~~~~~d~G~y~C~~ 185 (323)
|++++|.|.+ .+.+ ...+.|++++..... ..... .. ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSS---TSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCC---CcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 5555 689999998876654 22111 11 113999999999999999986
No 222
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.86 E-value=4.8e-08 Score=65.22 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeeecCC-CeeEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTVDD-AGQYSC 183 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d-~G~y~C 183 (323)
......+.+|+++.|.|.+.+.|+ +..|.|..++..+... ...++. .....|.|.++...| .|.|.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C 82 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESG--TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNC 82 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCC--CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEE
Confidence 445566889999999999988775 4588998887766441 123443 356789999998766 799999
Q ss_pred EEEcCCCCC
Q psy15235 184 RLIDPKSTN 192 (323)
Q Consensus 184 ~~~~~~~~~ 192 (323)
.| .|..+.
T Consensus 83 ~a-~N~~G~ 90 (98)
T cd05898 83 TA-WNSFGS 90 (98)
T ss_pred EE-EeCCcc
Confidence 99 787443
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.86 E-value=1.8e-08 Score=65.21 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=52.5
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
...+..|+.+.|.|...+.. ..+.|+.++..+.. +.++......|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~~----A~v~W~~ng~~l~~----~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSNL----ASPVWLFNGTPLNA----QFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCCC----ccEEEEECCcccCC----CcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 34577899999999988864 59999999998876 56666556668899999999999999994
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.86 E-value=9.3e-09 Score=68.13 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=54.4
Q ss_pred eEEecCCcEEEEEEe-ecC-CCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 117 KVFEYRVPFTLKCNV-TSP-PPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~-~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+.+..|....|.|.- .++ .+...+.+.||||+.++... ..++. .....|.|.++..+|+|.|+|++ .+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~---~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~-~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD---NEKFYSLKGSTYLHIIDVSLNDSGYYTCKL-QFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC---CcceEecCCCCEEEEEEcChhhCEEEEEEE-EEeeCC
Confidence 456678999999963 222 01115799999999988641 12222 23457999999999999999999 665444
Q ss_pred CCCceeeeeE
Q psy15235 193 TTPLAQADFD 202 (323)
Q Consensus 193 ~~~~~~~~l~ 202 (323)
.....+..+.
T Consensus 81 ~~y~vtr~~~ 90 (95)
T cd05897 81 KKYNITRIIK 90 (95)
T ss_pred EEEEEEEEEE
Confidence 3333343333
No 225
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.86 E-value=3.1e-08 Score=66.66 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=48.0
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec-ccc---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TEA---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
...+.+|++++|.|.+.+.+ .+.+.|++.+..+ ... .....|+. .....|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred cEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 34577899999999998766 6799998633221 100 00123443 234679999999999999999994
No 226
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.86 E-value=8e-08 Score=66.59 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=58.2
Q ss_pred eceeEEeeCCeEEEEEEEecCC----CCcEEEEE---------------CCeeeecc----CCeeeeecCCCCCCcceeE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSP----PPTVEWRI---------------GNDTYFRS----QGRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~---------------~~~~~~~~----~~~~~~~~~~~~~~~~~~L 268 (323)
+....+..|+.++|.|...... ...+.|.+ +|...... .+|+.+.... .....+|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI 82 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI 82 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence 4456678899999999996542 34799943 22221100 1243333111 2346889
Q ss_pred EEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.|.+++.+|.|.|+|.+.|..+. ......+.|.|
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~--~~~~~~~~l~v 116 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDI--VGKSSQVTLYV 116 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCc--CCceeEEEEEC
Confidence 99999999999999999998765 23446666654
No 227
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.79 E-value=9.7e-08 Score=61.07 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=52.8
Q ss_pred EEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 223 LRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 223 ~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++|.|.+.|. |.+.|+|++++..+...... .....++....++|.|..-..+|...|+|.|.|..=. .....+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~---~~~~~~~ 76 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK---DLQTQRY 76 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC---CceeeEE
Confidence 6899999665 88899999999988643111 1111223335688888766666666899999998733 2556666
Q ss_pred EEEc
Q psy15235 302 VRVK 305 (323)
Q Consensus 302 l~v~ 305 (323)
|.|.
T Consensus 77 L~V~ 80 (82)
T cd05883 77 LEVQ 80 (82)
T ss_pred EEEE
Confidence 6664
No 228
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.78 E-value=4.4e-08 Score=65.18 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=51.3
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+...|. .++..|+.|+|+|.... + ...+.|+++|...... ..........+.|.+++.+|+|.|+|.. .+
T Consensus 4 ~L~a~p~-~vV~~G~~VtL~C~~~~-~---~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~-~~ 74 (91)
T cd05751 4 SLWAEPS-SVVPLGKPVTLRCQGPY-G---AVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYY-RS 74 (91)
T ss_pred EEEecCC-CccCCCCcEEEEEecCC-C---CCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEE-EC
Confidence 3444443 35778999999998863 3 4689999998754320 0011145678999999999999999999 55
Q ss_pred C
Q psy15235 189 K 189 (323)
Q Consensus 189 ~ 189 (323)
.
T Consensus 75 ~ 75 (91)
T cd05751 75 G 75 (91)
T ss_pred C
Confidence 4
No 229
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.78 E-value=3.1e-08 Score=65.78 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=48.8
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE-------eceeEEEEeeeecCCCee
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT-------QSKDSITIRKTTVDDAGQ 180 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~-------~~~~~l~i~~~~~~d~G~ 180 (323)
.+..|++|+|.|.+.+.+ .+.+.|++++..... ......++. .....|+|.+++.+|+|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 3 LGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred EeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 467899999999998877 789999976632110 001122222 234679999999999999
Q ss_pred EEEEEEcCC
Q psy15235 181 YSCRLIDPK 189 (323)
Q Consensus 181 y~C~~~~~~ 189 (323)
|.|.+ .+.
T Consensus 80 Y~C~v-~~~ 87 (94)
T cd07690 80 YICEV-EDK 87 (94)
T ss_pred EEEEE-CCc
Confidence 99999 665
No 230
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.78 E-value=1.3e-07 Score=65.48 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=55.1
Q ss_pred eEEecCCcEEEEEEeecCCCC-CCceEEE-E--------------ECCeecc-ccccccCcEE------eceeEEEEeee
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPG-DDYQIVW-Y--------------KGNKSIT-EATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~-~~~~i~W-~--------------~~~~~~~-~~~~~~~~~~------~~~~~l~i~~~ 173 (323)
..+..|+.++|.|......+. +...|+| + ++|.... ....+.+|+. ....++.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 456689999999998764321 2579999 3 2333222 1123445664 35678999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADF 201 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l 201 (323)
+.+|+|.|+|.+ .+..........+.|
T Consensus 88 ~~sD~G~Y~C~v-~n~p~~~~~~~~~~l 114 (116)
T cd05879 88 DYTDNGTFTCDV-KNPPDIVGKSSQVTL 114 (116)
T ss_pred CcccCEEEEEEE-EcCCCcCCceeEEEE
Confidence 999999999999 666444333344433
No 231
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.76 E-value=1.3e-07 Score=65.16 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=55.8
Q ss_pred eCCeEEEEEEEecCC------CCcEEEEECCee-------e-ec---------cCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235 219 EGEKLRLECLVVGSP------PPTVEWRIGNDT-------Y-FR---------SQGRIKLSEHPEKGTANSVLQIDEATM 275 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p------~~~~~W~~~~~~-------~-~~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~ 275 (323)
.|++++|.|.....| ...+.|++.... + .. -.+|+.+.. . ......|.|.+++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~sL~I~~v~~ 77 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR--A-HDLDASLVITDLRL 77 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC--C-CCCcEEEEEccCCh
Confidence 488999999986553 346999985310 1 10 012333321 1 11357899999999
Q ss_pred CCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 276 ~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+|+|.|.|.+.+..+. ....+.|.|.+
T Consensus 78 ~DsG~Y~C~v~~~~~~----~~~~~~l~v~~ 104 (106)
T cd05877 78 EDYGRYRCEVIDGLED----ESVVVALRLRG 104 (106)
T ss_pred HHCEEEEEEEEecccc----eEEEEEEEEEE
Confidence 9999999999987744 88888888875
No 232
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.76 E-value=4.7e-08 Score=64.58 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=54.1
Q ss_pred CceeEEecCCcEEEEEE-eecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCe-eEEEEEEcCC
Q psy15235 114 PKYKVFEYRVPFTLKCN-VTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAG-QYSCRLIDPK 189 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~-~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G-~y~C~~~~~~ 189 (323)
.+...+.+|+.+.|.|. ..+.| .+.|.|++++..... .+.|+. ..++.|.|.++...|+| .|.|.| .+.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P---~P~i~W~~~~~~~i~---~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a-~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAV---PLRIYWMNSDLLHIT---QDERVSMGQNGNLYFANVEEQDSHPDYICHA-HFP 81 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCC---CCEEEEECCCCcccc---ccccEEECCCceEEEEEEehhhCCCCeEEEE-Ecc
Confidence 35566889999999997 46666 799999987644222 155665 56699999999999999 899999 665
No 233
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.75 E-value=8.1e-08 Score=62.16 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=52.2
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
...+..|+++.|.|...+. .+.+.|++++..+.. +.++... ..-|.|..++.+|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~-~~r~~~~--------~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA-QFSYRVG--------TDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCC-CcceEEe--------CCCCEEEECCHhhCEEEEEEEec
Confidence 4568899999999999755 779999999998864 3455544 34588999999999999999883
No 234
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=2.2e-07 Score=63.96 Aligned_cols=83 Identities=25% Similarity=0.446 Sum_probs=55.9
Q ss_pred eCCeEEEEEEEecCC------------CCcEEEEECC--e--e-eeccC----------CeeeeecCCCCCCcceeEEEe
Q psy15235 219 EGEKLRLECLVVGSP------------PPTVEWRIGN--D--T-YFRSQ----------GRIKLSEHPEKGTANSVLQID 271 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p------------~~~~~W~~~~--~--~-~~~~~----------~~~~~~~~~~~~~~~~~L~i~ 271 (323)
.|++++|.|...... .+.+.|++-. . . +.... +|+.+...+ ......+|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence 488999999996432 3579999842 1 1 11111 244333100 12247899999
Q ss_pred ecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 272 ~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+++.+|+|.|+|.+.+.. ......+.|.|.+
T Consensus 80 nl~~sDsG~Y~C~V~~g~----~~~~~~v~l~v~g 110 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGI----EDNYDTVEVQVKG 110 (112)
T ss_pred ecccccCEEEEEEEecCC----CCceeEEEEEEEe
Confidence 999999999999999776 3477788888875
No 235
>smart00409 IG Immunoglobulin.
Probab=98.75 E-value=2.4e-07 Score=60.77 Aligned_cols=65 Identities=32% Similarity=0.643 Sum_probs=51.6
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+..|+++.|.|.+.+.+ ...+.|+++ +..+.. ..++. .....|.|.++..+|+|.|.|.+ .+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v-~~~ 73 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAA-TNS 73 (86)
T ss_pred EEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCeEEEEEE-EcC
Confidence 4467899999999998885 689999998 776653 34443 22468999999999999999999 544
No 236
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.75 E-value=2.4e-07 Score=60.77 Aligned_cols=65 Identities=32% Similarity=0.643 Sum_probs=51.6
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+..|+++.|.|.+.+.+ ...+.|+++ +..+.. ..++. .....|.|.++..+|+|.|.|.+ .+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v-~~~ 73 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAA-TNS 73 (86)
T ss_pred EEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCeEEEEEE-EcC
Confidence 4467899999999998885 689999998 776653 34443 22468999999999999999999 544
No 237
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.72 E-value=5.5e-08 Score=65.12 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=52.9
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeec-----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFR-----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
|++++|.|.....+...+.|+++...... -.+|+.+. ....|+|.+++.+|+|.|+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-------~~~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-------PNGSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-------CCceEEEccCCchhcEEEE
Confidence 78999999987655558999997643210 01222222 3588999999999999999
Q ss_pred EEEeecccCCCCCceeEEEEEE
Q psy15235 283 CHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|.+....|. .....+.|+|
T Consensus 74 c~v~~~~~~---~~~~~~~l~v 92 (92)
T cd05741 74 LQIISTNGV---TENAKFFLRV 92 (92)
T ss_pred EEEEcCCCc---EEEEEEEEEC
Confidence 999998743 3556665553
No 238
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.72 E-value=2.5e-07 Score=59.17 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=53.4
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeeccccccc---cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeee
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL---SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQAD 200 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~ 200 (323)
.+.|.|.+.+..| ...|+||+++.++...... ..+-......|.|..-..+|...|+|+| .|.... .......
T Consensus 1 ~~~L~C~s~gSkP--~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a-~~~~l~-~~~~~~~ 76 (82)
T cd05883 1 EIELNCTAMASKP--AATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLV-DHPAVK-DLQTQRY 76 (82)
T ss_pred CEEEEEEecCCCC--CCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEE-cCcccC-CceeeEE
Confidence 3689999999877 6799999999988652110 1111145567888766666777999999 777533 3566666
Q ss_pred eEEEe
Q psy15235 201 FDVIM 205 (323)
Q Consensus 201 l~v~~ 205 (323)
|.|++
T Consensus 77 L~V~y 81 (82)
T cd05883 77 LEVQY 81 (82)
T ss_pred EEEEE
Confidence 66654
No 239
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.72 E-value=2.8e-07 Score=64.45 Aligned_cols=79 Identities=18% Similarity=0.389 Sum_probs=50.9
Q ss_pred eeceeEEeeCCeEEEEEEEecCC----CCcEEEEECCe------ee-ec--------cC----CeeeeecCCCCCCccee
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSP----PPTVEWRIGND------TY-FR--------SQ----GRIKLSEHPEKGTANSV 267 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~------~~-~~--------~~----~~~~~~~~~~~~~~~~~ 267 (323)
.|....+.+|++++|.|...... ...+.|++... .+ .. .. .|+.+. .........
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~s 81 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV--GNPSRKDAS 81 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe--cCCcCCeeE
Confidence 45566788999999999995432 13599986321 11 00 01 111111 011123578
Q ss_pred EEEeecCcCCCeEEEEEEeecccC
Q psy15235 268 LQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 268 L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|+|.+++.+|+|.|.|.+.|....
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999999998754
No 240
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.71 E-value=2.2e-07 Score=63.93 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=56.1
Q ss_pred eCCeEEEEEEEecCC------CCcEEEEECC-----e-ee-eccCCeeeeecC-------CCCCCcceeEEEeecCcCCC
Q psy15235 219 EGEKLRLECLVVGSP------PPTVEWRIGN-----D-TY-FRSQGRIKLSEH-------PEKGTANSVLQIDEATMADR 278 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p------~~~~~W~~~~-----~-~~-~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~ 278 (323)
.|++++|.|.....+ ...+.|++.. . .+ ...+........ .........|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999997653 4579999862 1 11 111111111000 01122578999999999999
Q ss_pred eEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 279 GNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 279 G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
|.|.|.+.+..+ .....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~----~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIE----DEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCC----ceEEEEEEEEEE
Confidence 999999998763 478888888875
No 241
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.71 E-value=7.3e-08 Score=66.76 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=54.7
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCee--e----e-------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT--Y----F-------RSQGRIKLSEHPEKGTANSVLQIDEATMADR 278 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~--~----~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 278 (323)
+....+.+|++++|.|.+.+.+...+.|++.... . . ...+++.+.... ......|+|.+++.+|+
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK--SRKSSSLHISAAQLSDS 82 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc--cCCEEEEEECCCCHHHC
Confidence 3456788999999999998777778999984321 0 0 123445444211 12468899999999999
Q ss_pred eEEEEEEeecc
Q psy15235 279 GNYYCHGNNVA 289 (323)
Q Consensus 279 G~y~C~a~n~~ 289 (323)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999999764
No 242
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.69 E-value=3.2e-07 Score=63.26 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=56.6
Q ss_pred eCCeEEEEEEEecCC----------CCcEEEEECC--eeee---c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235 219 EGEKLRLECLVVGSP----------PPTVEWRIGN--DTYF---R----------SQGRIKLSEHPEKGTANSVLQIDEA 273 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p----------~~~~~W~~~~--~~~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v 273 (323)
.|++++|.|.....+ ...+.|++.. .... . -.+|+.+.... .......|+|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~-~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP-ENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC-CCCCcEEEEECCC
Confidence 488999999996543 2469999852 1110 0 11233332111 1124688999999
Q ss_pred CcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 274 ~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+.+|+|.|.|.+.... ...+..+.|.|.+
T Consensus 80 ~~sD~G~Y~C~v~~~~----~~~~~~v~l~V~g 108 (110)
T cd05878 80 RSSDSGVYRCEVMHGI----EDEQDTVPLEVTG 108 (110)
T ss_pred ChhhCEEEEEEEEeCC----CcceEEEEEEEEE
Confidence 9999999999999865 3488899998876
No 243
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.68 E-value=2.2e-07 Score=60.42 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=45.1
Q ss_pred EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.|.|.+.+ +|.+.+.|++++..+.... . .... +.++ ...+.|.+.....++.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~-~~~~-~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-L-KEED-ENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-e-eEec-CCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999965 5888999999998875322 1 1111 1111 23456777666666677999999998855
No 244
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.66 E-value=1.7e-07 Score=62.69 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=53.9
Q ss_pred cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
+|.+...+...+.+|++++|.|.... +...+.|+++|...... .... .........+.|..++.+|+|.|.|..
T Consensus 1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~--~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYE--KHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CCEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---eccc--ccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 46667677788899999999998854 44579999988653210 0000 011224678999999999999999998
Q ss_pred ee
Q psy15235 286 NN 287 (323)
Q Consensus 286 ~n 287 (323)
..
T Consensus 75 ~~ 76 (94)
T cd05711 75 SY 76 (94)
T ss_pred EC
Confidence 63
No 245
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.66 E-value=3.6e-07 Score=62.14 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=52.3
Q ss_pred CCeEEEEEEEecCCC---CcEEEEECCe--eee---c-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235 220 GEKLRLECLVVGSPP---PTVEWRIGND--TYF---R-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280 (323)
Q Consensus 220 g~~~~l~C~~~g~p~---~~~~W~~~~~--~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 280 (323)
|++++|.|...+... ..+.|++... .+. . -.+|+.+... .......+|+|.+++.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD-AIAEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc-cccCCcEEEEEEcCChhhCEE
Confidence 678999999853322 2588988542 110 0 0123332210 011235789999999999999
Q ss_pred EEEEEeecccCCCCCceeEEEEEEc
Q psy15235 281 YYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 281 y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
|+|.+.|..+. .+..+.|.|.
T Consensus 80 Y~C~v~~~~~~----~~~~i~l~v~ 100 (100)
T cd05713 80 YTCFFQSDGFY----EEATVELKVA 100 (100)
T ss_pred EEEEEecCCcE----EEEEEEEEEC
Confidence 99999997743 7788888763
No 246
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.65 E-value=2.8e-07 Score=60.52 Aligned_cols=66 Identities=23% Similarity=0.392 Sum_probs=45.3
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cE-----EeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RL-----TQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|+++.|.|.+.+.+.. ...+.|..++........... +. ......|.|.+++.+|+|.|+|.+ .|.
T Consensus 1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a-~n~ 72 (86)
T cd05862 1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTA-SSG 72 (86)
T ss_pred CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEE-eec
Confidence 7899999999865321 468899887654321000010 11 134578999999999999999999 676
No 247
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.65 E-value=1.2e-07 Score=63.39 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=47.1
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
|++|+|.|...... ...|.|++....... ...+.+|+. ..+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v- 76 (92)
T cd05741 1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQI- 76 (92)
T ss_pred CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEE-
Confidence 78999999887655 679999986532211 123345554 45589999999999999999999
Q ss_pred cCC
Q psy15235 187 DPK 189 (323)
Q Consensus 187 ~~~ 189 (323)
...
T Consensus 77 ~~~ 79 (92)
T cd05741 77 IST 79 (92)
T ss_pred EcC
Confidence 444
No 248
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.64 E-value=1.6e-07 Score=63.80 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=51.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc----------cccccCcEE-eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE----------ATELSGRLT-QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~----------~~~~~~~~~-~~~~~l~i~~~~~~ 176 (323)
++....+.+|+.+.|.|...... ...+.|||+.. .+.. .+.+++|.. ..+.+|.|++++..
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~---~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPEN---LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK 80 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCC---ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence 44445677899999999754333 56999999632 1111 112345544 45679999999999
Q ss_pred CCeeEEEEEEcCC
Q psy15235 177 DAGQYSCRLIDPK 189 (323)
Q Consensus 177 d~G~y~C~~~~~~ 189 (323)
|+|.|+|.+ .+.
T Consensus 81 D~G~Y~~~v-~~~ 92 (105)
T cd05774 81 DTGFYTLQT-ITT 92 (105)
T ss_pred cCEEEEEEE-EeC
Confidence 999999999 555
No 249
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.61 E-value=2.7e-07 Score=62.64 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=54.1
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCee-----ee---c----------cCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDT-----YF---R----------SQGRIKLSEHPEKGTANSVLQIDEATMA 276 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-----~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 276 (323)
..+.+|+++.|.|.....+...+.|+++... +. . ..+|..+. .+++|.|.+++.+
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-------~ngSL~I~~v~~~ 80 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-------PNGSLLIQNVTQK 80 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-------CCCcEEEecCCcc
Confidence 4567899999998664333337999996321 10 0 11222222 3578999999999
Q ss_pred CCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 277 DRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 277 d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|+|.|+|.+.+.... .....+.|.|
T Consensus 81 D~G~Y~~~v~~~~~~---~~~~~v~l~V 105 (105)
T cd05774 81 DTGFYTLQTITTNFQ---VEQATVHLQV 105 (105)
T ss_pred cCEEEEEEEEeCCcc---EEEEEEEEEC
Confidence 999999999998732 3666666654
No 250
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.61 E-value=9.5e-07 Score=61.52 Aligned_cols=79 Identities=19% Similarity=0.405 Sum_probs=50.9
Q ss_pred eeceeEEeeCCeEEEEEEEecCC----CCcEEEEEC----Cee--ee---c-----cC----CeeeeecCCCCCCcceeE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSP----PPTVEWRIG----NDT--YF---R-----SQ----GRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~----~~~--~~---~-----~~----~~~~~~~~~~~~~~~~~L 268 (323)
.+....+.+|++++|.|.....+ ...+.|++. +.. +. . .. .|+.+. .........|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~--~~~~~~~~sL 81 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWD--GNIMRRDASI 81 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEe--cCCcCCceEE
Confidence 34566788999999999986443 235999752 111 10 0 01 122111 0111235779
Q ss_pred EEeecCcCCCeEEEEEEeecccC
Q psy15235 269 QIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+|.+++.+|+|.|.|.+.|..+.
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 82 LIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEeeCChhhCEEEEEEEEeCCCC
Confidence 99999999999999999998754
No 251
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.60 E-value=6.9e-07 Score=58.10 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=45.4
Q ss_pred EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.|+|.+.| +|.+.|+|+++|..+..... .......++ ...+.|.+.....+|...|+|.|.|....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~--~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT--SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce--eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999966 48889999999988754221 122112211 12366777666666778999999998854
No 252
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.59 E-value=4.1e-07 Score=63.04 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=52.3
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCe--eee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGND--TYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT 274 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~ 274 (323)
|....+.+|++++|.|.+.+ +.+.+.||+... .+. ...+++.... .. .....|+|.+++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~--~~-~~~~~L~I~~~~ 80 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASR--PS-LTRSSLTIKSAE 80 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEEC--cC-CCccEEEECCCC
Confidence 44567889999999999977 667899998532 111 0123333331 11 136789999999
Q ss_pred cCCCeEEEEEEeecc
Q psy15235 275 MADRGNYYCHGNNVA 289 (323)
Q Consensus 275 ~~d~G~y~C~a~n~~ 289 (323)
.+|+|.|.|.+.+..
T Consensus 81 ~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 81 PEDSAVYLCASSLGG 95 (110)
T ss_pred hhhCEEEEEEeeCCC
Confidence 999999999998754
No 253
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.58 E-value=1.6e-07 Score=63.31 Aligned_cols=72 Identities=19% Similarity=0.339 Sum_probs=50.3
Q ss_pred eeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 218 IEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..|+.+.|.|.+.|. |. +.++|+++|..+.............++ ....+.|.+.....+|.|.|+|.|.|..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 368899999999887 64 589999999887643221111111111 1345667787777779999999999987
No 254
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.57 E-value=5.7e-07 Score=61.13 Aligned_cols=67 Identities=16% Similarity=0.453 Sum_probs=44.1
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCe--eccc-----------cccccCcEE-------eceeEEEEeeeecCCCeeE
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITE-----------ATELSGRLT-------QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~-----------~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y 181 (323)
|++++|.|............+.|++... .+.. ...+.+|+. ....+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998643221145889988542 1100 112234543 2346899999999999999
Q ss_pred EEEEEcCC
Q psy15235 182 SCRLIDPK 189 (323)
Q Consensus 182 ~C~~~~~~ 189 (323)
+|.+ .+.
T Consensus 81 ~C~v-~~~ 87 (100)
T cd05713 81 TCFF-QSD 87 (100)
T ss_pred EEEE-ecC
Confidence 9999 554
No 255
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.55 E-value=1e-06 Score=56.31 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=49.1
Q ss_pred ceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 213 ETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
....+..|++++|+|.....+ .+.++|...+........ ....+|.+.+++..|+|.++|.+....
T Consensus 7 ~~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~ 74 (88)
T cd07694 7 SSDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNS 74 (88)
T ss_pred CCCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECc
Confidence 345677899999999995543 458999976554321100 147889999999999999999998654
No 256
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=1.4e-06 Score=59.98 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=51.4
Q ss_pred cCCcEEEEEEeecCCCC---------CCceEEEEEC--Cee---cc-------ccccccCcEE-------eceeEEEEee
Q psy15235 121 YRVPFTLKCNVTSPPPG---------DDYQIVWYKG--NKS---IT-------EATELSGRLT-------QSKDSITIRK 172 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~---------~~~~i~W~~~--~~~---~~-------~~~~~~~~~~-------~~~~~l~i~~ 172 (323)
.|++|+|.|......+. ..+.|.|+|- +.. +. ....+.+|+. ....+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 38999999988653311 0359999983 211 10 0223445665 2578999999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
++.+|+|.|+|.+ .+. .......+.|.|
T Consensus 81 l~~sDsG~Y~C~V-~~g--~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEV-MHG--IEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEE-ecC--CCCceeEEEEEE
Confidence 9999999999999 543 233444444444
No 257
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.54 E-value=9.2e-07 Score=61.00 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=53.8
Q ss_pred cCCcEEEEEEeecCCCC-------CCceEEEEEC--Ceecc----------ccccccCcEE-------eceeEEEEeeee
Q psy15235 121 YRVPFTLKCNVTSPPPG-------DDYQIVWYKG--NKSIT----------EATELSGRLT-------QSKDSITIRKTT 174 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~-------~~~~i~W~~~--~~~~~----------~~~~~~~~~~-------~~~~~l~i~~~~ 174 (323)
.|+.|+|.|......+. ....|.|++. +.... ....+.+|+. ....+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38999999998764421 1368999984 22111 1223445554 245789999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.+|+|.|.|.+ ... .......+.|.|.
T Consensus 81 ~sD~G~Y~C~v-~~~--~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEV-MHG--IEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEE-EeC--CCcceEEEEEEEE
Confidence 99999999999 544 3345666666654
No 258
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.53 E-value=1.1e-06 Score=59.55 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=50.1
Q ss_pred CeEEEEEEEecCC---CCcEEEEECCee----e--ec----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235 221 EKLRLECLVVGSP---PPTVEWRIGNDT----Y--FR----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281 (323)
Q Consensus 221 ~~~~l~C~~~g~p---~~~~~W~~~~~~----~--~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 281 (323)
++++|.|.....+ ...+.|++.... + .. ...|..+.. . ......|+|.+++.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~sL~I~~v~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN--S-SLEDATISISNLRLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC--C-CCCceEEEEccCCcccCEEE
Confidence 4689999997654 336999985531 0 00 011222221 0 11467899999999999999
Q ss_pred EEEEee-cccCCCCCceeEEEEEE
Q psy15235 282 YCHGNN-VATRNSQPNEAFVYVRV 304 (323)
Q Consensus 282 ~C~a~n-~~g~~~~~~~~~~~l~v 304 (323)
.|.+.+ ..| +....+.|.|
T Consensus 78 ~C~v~~~~~g----~~~~~~~l~V 97 (98)
T cd05718 78 ICEFATFPQG----NRQKVTTLTV 97 (98)
T ss_pred EEEEEeCCCC----cEEEEEEEEe
Confidence 999986 443 4777777765
No 259
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.53 E-value=5.1e-07 Score=60.82 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=54.1
Q ss_pred eeCCeEEEEEEEec-CCCCcEEEEECCeeeeccC----------------CeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235 218 IEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQ----------------GRIKLSEHPEKGTANSVLQIDEATMADRGN 280 (323)
Q Consensus 218 ~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 280 (323)
..|++++|.|.... .....+.|++....+.... .|+.+. .....|+|.+++.+|+|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~------~~~~sL~I~~~~~~DsG~ 75 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS------QNDYSLQISNLKMEDAGS 75 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec------CCceeEEECCCchHHCEE
Confidence 36999999998854 3345799998754322111 111111 135889999999999999
Q ss_pred EEEEEeecccCCCCCceeEEEEEE
Q psy15235 281 YYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 281 y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|.|.+.+..|. .....+.|+|
T Consensus 76 Y~c~v~~~~~~---~~~~~f~L~v 96 (97)
T cd05775 76 YRAEINTKNGV---TITKEFTLHI 96 (97)
T ss_pred EEEEEEcCCCC---eEEEEEEEEe
Confidence 99999998854 3566777665
No 260
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.52 E-value=4.3e-07 Score=62.43 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=51.1
Q ss_pred EEeeCCeEEEEEEEecC-CCCcEEEEECCee-----ee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235 216 TVIEGEKLRLECLVVGS-PPPTVEWRIGNDT-----YF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR 278 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 278 (323)
.+.+|++++|.|.+.+. +...+.|++.... +. ....++.+.... ......|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS--SKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec--cCCEEEEEECCCCHHHC
Confidence 46789999999999866 5668999984321 10 012233333111 11467899999999999
Q ss_pred eEEEEEEeeccc
Q psy15235 279 GNYYCHGNNVAT 290 (323)
Q Consensus 279 G~y~C~a~n~~g 290 (323)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998773
No 261
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.51 E-value=2.2e-06 Score=56.88 Aligned_cols=80 Identities=10% Similarity=0.186 Sum_probs=56.9
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCce-EEEEECCeeccccccccCcEE-------eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQ-IVWYKGNKSITEATELSGRLT-------QSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
...+..|+.+.|.|.+.++| .++ +.|.+++..+..... ..+. .-...|.+..++.++.|.|+|.| .
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP---~p~~~~W~~~~~~l~~~~~--~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a-~ 85 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYP---KPEHQQWIYMNRTLTNTSD--HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLV-S 85 (101)
T ss_pred eEEEECCCCEEEEEEEEeCC---CCeeeEEEcCCcccCcccc--ceeEEeccCceEEEEEEEEeecChhhCcEEEEEE-E
Confidence 44588899999999999999 565 999998876544211 1111 13478999999999999999999 7
Q ss_pred CCCCCCCCceeeeeEE
Q psy15235 188 PKSTNTTPLAQADFDV 203 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v 203 (323)
|. ....+.++.|.|
T Consensus 86 N~--~~~~s~tF~l~v 99 (101)
T cd05860 86 NS--DASASVTFNVYV 99 (101)
T ss_pred CC--CCeEEEEEEEEE
Confidence 76 223344444443
No 262
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.51 E-value=3.9e-07 Score=61.36 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=46.1
Q ss_pred cCCcEEEEEEeec-CCCCCCceEEEEECCeeccc-------------cccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235 121 YRVPFTLKCNVTS-PPPGDDYQIVWYKGNKSITE-------------ATELSGRLT--QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 121 ~g~~v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.|++|+|.|.... .. ...+.|++....+.. ...+.+|+. ....+|+|.+++.+|+|.|.|.
T Consensus 3 ~G~sVtL~c~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 3 LGGSVTLPLNIPDGTE---IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred cCCeEEEeCCCCCCcE---EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence 5999999998765 33 568999986432211 112233443 3458899999999999999999
Q ss_pred EEcCC
Q psy15235 185 LIDPK 189 (323)
Q Consensus 185 ~~~~~ 189 (323)
+ ...
T Consensus 80 v-~~~ 83 (97)
T cd05775 80 I-NTK 83 (97)
T ss_pred E-EcC
Confidence 9 444
No 263
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.50 E-value=2.4e-06 Score=59.71 Aligned_cols=75 Identities=25% Similarity=0.445 Sum_probs=48.3
Q ss_pred CceeEEecCCcEEEEEEeecCCCC-CCceEEEEECCe------ecc----------ccccccCcEE------eceeEEEE
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNK------SIT----------EATELSGRLT------QSKDSITI 170 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~------~~~----------~~~~~~~~~~------~~~~~l~i 170 (323)
|....+..|+.++|.|......+. ....+.|++... .+. ....+..|+. ....+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 445567789999999988654311 035799986321 110 0112223332 22478999
Q ss_pred eeeecCCCeeEEEEEEcCC
Q psy15235 171 RKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~ 189 (323)
.+++.+|+|.|.|.+ .+.
T Consensus 85 ~~v~~~D~G~Y~C~v-~~~ 102 (116)
T cd05715 85 HNLQFTDNGTYTCDV-KNP 102 (116)
T ss_pred eeCCcccCEEEEEEE-EeC
Confidence 999999999999999 555
No 264
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.49 E-value=7.9e-07 Score=61.12 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=50.1
Q ss_pred eceeEEeeCCeEEEEEEEecCC-CCcEEEEECCe--e---eec--------cCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSP-PPTVEWRIGND--T---YFR--------SQGRIKLSEHPEKGTANSVLQIDEATMAD 277 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~--~---~~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 277 (323)
|....+.+|++++|.|.+.+.. ...+.|++... . +.. ...++... . ......|+|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~~~~~D 82 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--G--SGTDFTLTISRVEPED 82 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--c--cCCEEEEEECCCChHH
Confidence 4456788999999999997665 56799997431 1 110 01233322 1 1135679999999999
Q ss_pred CeEEEEEEeec
Q psy15235 278 RGNYYCHGNNV 288 (323)
Q Consensus 278 ~G~y~C~a~n~ 288 (323)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999999764
No 265
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.48 E-value=1.3e-06 Score=58.39 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=49.7
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc--CcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--GRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+....+.+|+.++|+|.+.+..|.+...|.|||++..+....... ........++.+..-..+|...|+|+| ...
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A-~l~ 84 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET-ELD 84 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE-Eec
Confidence 4444456789999999999998775334589999998886521111 011134456666655444555999999 554
No 266
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.48 E-value=3.1e-06 Score=58.93 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=48.4
Q ss_pred CceeEEecCCcEEEEEEeecCCCCC-CceEEEEEC----Cee--cc---------ccccccCcEE------eceeEEEEe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG----NKS--IT---------EATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~----~~~--~~---------~~~~~~~~~~------~~~~~l~i~ 171 (323)
+....+.+|++++|.|......+.. ...|.|++. +.. +. ....+..|+. ....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3445577899999999876533211 247999741 211 10 0112223332 245679999
Q ss_pred eeecCCCeeEEEEEEcCCC
Q psy15235 172 KTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~ 190 (323)
+++.+|+|.|.|.+ .+..
T Consensus 85 ~v~~~D~G~Y~C~v-~~~~ 102 (115)
T cd05880 85 QLQPTDNGTYTCQV-KNPP 102 (115)
T ss_pred eCChhhCEEEEEEE-EeCC
Confidence 99999999999999 6553
No 267
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.48 E-value=1.5e-06 Score=58.58 Aligned_cols=78 Identities=27% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCe----ecc-----c----cccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK----SIT-----E----ATELSGRLT-----QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~~-----~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C 183 (323)
|++++|.|....... ...+.|+|... .+. . ...+.+|+. ....+|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~~--~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPEE--VLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCCe--eEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEE
Confidence 789999998765431 34799998432 111 0 112233332 356789999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEE
Q psy15235 184 RLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v 203 (323)
.+...+ .+.......|+|
T Consensus 79 ~~~~~p--~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFP--DGSKSGTMCLTV 96 (97)
T ss_pred EEEeCC--CCCeeeEEEEEE
Confidence 995454 333444555544
No 268
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.47 E-value=3e-06 Score=57.39 Aligned_cols=77 Identities=27% Similarity=0.339 Sum_probs=50.1
Q ss_pred eEEEEEEEecCC---CCcEEEEECCee-----ee--c----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235 222 KLRLECLVVGSP---PPTVEWRIGNDT-----YF--R----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281 (323)
Q Consensus 222 ~~~l~C~~~g~p---~~~~~W~~~~~~-----~~--~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 281 (323)
+++|.|.....+ ...+.|++.... +. . -.+|..+. .........|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~--~~~~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFE--TPNPIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEe--CCCCCCceEEEEecCccccceEE
Confidence 588999986443 237999983211 10 0 01233333 11122467899999999999999
Q ss_pred EEEEee-cccCCCCCceeEEEEEE
Q psy15235 282 YCHGNN-VATRNSQPNEAFVYVRV 304 (323)
Q Consensus 282 ~C~a~n-~~g~~~~~~~~~~~l~v 304 (323)
.|.+.+ +.|. .+..+.|.|
T Consensus 80 ~C~v~~~p~g~----~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGN----FEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCC----eeeEEEEEe
Confidence 999998 4543 578888876
No 269
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.47 E-value=9.2e-07 Score=61.20 Aligned_cols=73 Identities=22% Similarity=0.439 Sum_probs=52.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe---ec---cc----cccccCcEE------eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK---SI---TE----ATELSGRLT------QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~---~~---~~----~~~~~~~~~------~~~~~l~i~~~~~~ 176 (323)
.|....+.+|++++|.|.+.+.. ...+.||+... +. .. .....+|+. .....|.|.+++.+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 45566788999999999998765 67999998432 11 00 011244554 24678999999999
Q ss_pred CCeeEEEEEEcCC
Q psy15235 177 DAGQYSCRLIDPK 189 (323)
Q Consensus 177 d~G~y~C~~~~~~ 189 (323)
|+|.|.|.+ .+.
T Consensus 81 DsG~Y~C~~-~~~ 92 (109)
T cd04983 81 DSAVYFCAL-SES 92 (109)
T ss_pred HCEEEEEEE-ecC
Confidence 999999999 443
No 270
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.46 E-value=9e-07 Score=61.99 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=51.2
Q ss_pred eceeEEeeCCeEEEEEEEec--CCCCcEEEEECC--eeee------c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235 212 VETLTVIEGEKLRLECLVVG--SPPPTVEWRIGN--DTYF------R----------SQGRIKLSEHPEKGTANSVLQID 271 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~ 271 (323)
+....+.+|++++|.|.+.+ .+.+.+.|++.. .... . ...++.+.. ........|+|.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~ 82 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK--DVGKSTSTLTIQ 82 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE--ECCCCEEEEEEE
Confidence 34556788999999999976 567789999842 1110 0 123333331 111136789999
Q ss_pred ecCcCCCeEEEEEEeec
Q psy15235 272 EATMADRGNYYCHGNNV 288 (323)
Q Consensus 272 ~v~~~d~G~y~C~a~n~ 288 (323)
+++.+|+|.|.|.+...
T Consensus 83 ~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 83 NLEKEDSATYYCAYWES 99 (116)
T ss_pred ECCHHHCEEEEEEEecC
Confidence 99999999999999753
No 271
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.46 E-value=1.3e-06 Score=58.38 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=46.7
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
..++..|++|+|.|.... . ...+.|||+|...................+.|.+++.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~---~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-R---FDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-C---CCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 345678999999998766 3 458999998865432000000001345688999999999999999973
No 272
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.45 E-value=1.8e-06 Score=59.41 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=50.3
Q ss_pred cCCcEEEEEEeecCCC---CCCceEEEEECCe---e-----ccc------cccccCcEE-----eceeEEEEeeeecCCC
Q psy15235 121 YRVPFTLKCNVTSPPP---GDDYQIVWYKGNK---S-----ITE------ATELSGRLT-----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~---~~~~~i~W~~~~~---~-----~~~------~~~~~~~~~-----~~~~~l~i~~~~~~d~ 178 (323)
.|+.++|.|.....++ .....|.|+|... + +.. ...+.+|+. ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 4899999998866420 1146899998531 1 000 012334544 2246899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
|.|.|.+ .+. .......+.|.|
T Consensus 81 G~Y~C~v-~~~--~~~~~~~~~l~v 102 (106)
T cd05877 81 GRYRCEV-IDG--LEDESVVVALRL 102 (106)
T ss_pred EEEEEEE-Eec--ccceEEEEEEEE
Confidence 9999999 554 333444444444
No 273
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.45 E-value=5.5e-07 Score=57.49 Aligned_cols=56 Identities=30% Similarity=0.564 Sum_probs=40.0
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
++|.|.+.+.++ .+.++|+ +...... ............|.|.++..+|.|.|+|.|
T Consensus 18 ~~l~C~~~~~~~--~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 18 VTLTCSAEGGPP--PPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp EEEEEEESSEES--SEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred EEEEEEEccccC--CeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence 999999999876 6899999 1111111 001111156778999999999999999999
No 274
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.45 E-value=1.8e-06 Score=57.20 Aligned_cols=68 Identities=26% Similarity=0.524 Sum_probs=45.3
Q ss_pred CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|+.+.+.|.+ .++|++.+.|+.++..+.......... ...+ ...++|.+..-..++...++|.|.|..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSS--PDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEE--TTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeec--cCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 6799999988 678999999999998772111111111 1221 234678887655556668999999987
No 275
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.44 E-value=2.6e-06 Score=58.38 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=55.6
Q ss_pred CCeEEEEEEEecCC-------CCcEEEEECC-----eee--e-----------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235 220 GEKLRLECLVVGSP-------PPTVEWRIGN-----DTY--F-----------RSQGRIKLSEHPEKGTANSVLQIDEAT 274 (323)
Q Consensus 220 g~~~~l~C~~~g~p-------~~~~~W~~~~-----~~~--~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~ 274 (323)
|++++|.|...-.| .+.+.|.+.. ... . .-.+|..+...+ ......+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~-~~~~~asL~i~nv~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP-KNRYNASLVLSRLR 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC-CCCceEEEEECCCC
Confidence 78899999975332 3579999741 111 0 112344443211 11246899999999
Q ss_pred cCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 275 ~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.+|+|.|.|.+.... ...+..+.|.|.+
T Consensus 81 ~~D~G~Y~C~v~~g~----~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGI----NDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECC----cccEEEEEEEEEE
Confidence 999999999999955 4588899998875
No 276
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.44 E-value=1.8e-06 Score=59.39 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=51.6
Q ss_pred cCCcEEEEEEeecCCC---CCCceEEEEECC---e-e--cc--c------cccccCcEE-----eceeEEEEeeeecCCC
Q psy15235 121 YRVPFTLKCNVTSPPP---GDDYQIVWYKGN---K-S--IT--E------ATELSGRLT-----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~---~~~~~i~W~~~~---~-~--~~--~------~~~~~~~~~-----~~~~~l~i~~~~~~d~ 178 (323)
.|+.|+|.|.....++ .....|.|++.. . . +. . ...+..++. ....+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 4899999999876531 115799999862 1 1 10 0 011222322 3568899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
|.|.|.+ .+. .......+.|.|.
T Consensus 81 G~Y~C~v-~~~--~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEV-IDG--IEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEE-EcC--CCceEEEEEEEEE
Confidence 9999999 554 2334555555554
No 277
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.44 E-value=2.3e-06 Score=56.91 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=50.9
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECC----eeccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGN----KSITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
+.++|.|....... ..+|+|.|.. ..+.. ...+.+|.. ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~~vtL~C~~~~~~~--~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVNET--ITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCCCc--EEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEE
Confidence 46899999875443 5699998742 12211 112334444 3467899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEE
Q psy15235 185 LIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v 203 (323)
+...+ .+..++...|+|
T Consensus 79 v~tfP--~G~~~~~~~l~~ 95 (96)
T cd05887 79 AVTFP--LGNTQSSTTVTV 95 (96)
T ss_pred EEeCC--CCCeeEEEEEEE
Confidence 95555 344555656555
No 278
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.43 E-value=2.6e-06 Score=55.33 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=44.4
Q ss_pred EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
++|+|.+.| +|.+.++|++||..+..... .... .+.++ ...+.|.+.....++...|+|.|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~-~~~~-~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY-LKEE-DANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCcee-eEee-CCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999966 57778999999998753211 1111 11111 23567777765566667899999998744
No 279
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.41 E-value=3.6e-06 Score=54.68 Aligned_cols=63 Identities=22% Similarity=0.470 Sum_probs=39.7
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.+.|.|.+.+..| .+.|.|++++..+..... .++.+ .....|.+.....++.+.|+|.+ .+..
T Consensus 1 ~~~L~C~~~~~~P--~~~v~W~~~~~~l~~~~~~~~~~~~~~~-~~~s~l~~~~~~~d~g~~~~C~v-~h~~ 68 (82)
T cd05761 1 EVELTCTSSGSKP--AATIRWFKGDKELKGVKLKEEDENGKTF-TVTSSLRFQVDREDDGAPIICRV-DHPA 68 (82)
T ss_pred CEEEEEEecCcCc--CCeEEEEECCEEccCceeeEecCCCCEE-EEEEEEEEEcchhhCCCEEEEEE-eChh
Confidence 3689999988755 579999999988754110 00011 12334445444455667999999 6663
No 280
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.40 E-value=2.8e-06 Score=57.48 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=48.8
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCee----ccc---------cccccCcEE--e---ceeEEEEeeeecCCCeeEEEE
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKS----ITE---------ATELSGRLT--Q---SKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~----~~~---------~~~~~~~~~--~---~~~~l~i~~~~~~d~G~y~C~ 184 (323)
++|+|.|......+.....|.|+|.... +.. ...+..|.. . ....|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987654211458999995421 100 011233333 1 467899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEE
Q psy15235 185 LIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v 203 (323)
+.... .+.......|.|
T Consensus 81 v~~~~--~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFP--QGNRQKVTTLTV 97 (98)
T ss_pred EEeCC--CCcEEEEEEEEe
Confidence 94333 233444445444
No 281
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.39 E-value=3.6e-06 Score=61.81 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=58.3
Q ss_pred EEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccc--------cccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235 118 VFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITE--------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C 183 (323)
.+.+|++++|.|... +.. ..+++|+|....+.. ...+.+|+. .....|+|.+++.+|+|.|.|
T Consensus 26 ~V~ege~VtLsCs~t~s~~---~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFN---SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEcCCCCEEEEEecCCCCc---cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 367899999999975 434 578999996433221 223334553 356789999999999999999
Q ss_pred EEEcCCCCCC-CCceeeeeEEEec
Q psy15235 184 RLIDPKSTNT-TPLAQADFDVIMK 206 (323)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~l~v~~~ 206 (323)
..-.-+ .+ ..+....|+|...
T Consensus 103 ~F~tfp--~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 103 IFNTLL--SKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEecC--CCCCceeEEEEEEEch
Confidence 993332 33 5666777777653
No 282
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.39 E-value=9e-06 Score=55.88 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=34.1
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
...+|.|.+++.+|+|.|.|.+.+... .....+.|.|.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~----~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIE----DTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCc----ccEEEEEEEEEE
Confidence 468999999999999999999998873 488888888875
No 283
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.38 E-value=5.7e-06 Score=60.78 Aligned_cols=91 Identities=21% Similarity=0.375 Sum_probs=62.9
Q ss_pred eeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeee----------cc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235 214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYF----------RS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 281 (323)
...+.+|++++|.|... +...+.+.|++....+. .. .+|+...+ .....+.|+|.+++.+|+|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS---~s~~~StItIknVt~sDeGcY 100 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS---KSFNESTILIKNVSLKDNGCY 100 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec---cCCCcceEEEEeCChhhCeEE
Confidence 45678999999999984 55567899999643221 00 12333210 111468899999999999999
Q ss_pred EEEEeecccCCCC-CceeEEEEEEcceecC
Q psy15235 282 YCHGNNVATRNSQ-PNEAFVYVRVKGKSFG 310 (323)
Q Consensus 282 ~C~a~n~~g~~~~-~~~~~~~l~v~~~~~~ 310 (323)
.|...--. . | +.+..+.|.|......
T Consensus 101 ~C~F~tfp-~--G~~~~gt~CLtVt~~~~~ 127 (189)
T PHA02987 101 TCIFNTLL-S--KNNEKGVVCLNVTTDSYT 127 (189)
T ss_pred EEEEEecC-C--CCCceeEEEEEEEchhhc
Confidence 99988643 1 3 5788888888876443
No 284
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.37 E-value=2.2e-06 Score=57.93 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=47.5
Q ss_pred EEeeCCeEEEEEEEecC--CCCcEEEEECCe--ee---e--------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235 216 TVIEGEKLRLECLVVGS--PPPTVEWRIGND--TY---F--------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~--~~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 280 (323)
.+.+|++++|.|...+. ....+.|++... .. . ...+++... ... ....|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~--~~~--~~~~L~I~~~~~~Dsg~ 77 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS--KSG--NTASLTISGAQTEDEAD 77 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE--ccC--CEEEEEECCCChhhCEE
Confidence 46789999999999654 455799998432 11 0 011233332 111 45789999999999999
Q ss_pred EEEEEeec
Q psy15235 281 YYCHGNNV 288 (323)
Q Consensus 281 y~C~a~n~ 288 (323)
|.|.+.+.
T Consensus 78 Y~C~~~~~ 85 (98)
T cd04984 78 YYCQVWDS 85 (98)
T ss_pred EEEEEccC
Confidence 99999864
No 285
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.37 E-value=2e-06 Score=59.57 Aligned_cols=71 Identities=23% Similarity=0.489 Sum_probs=50.6
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe--eccc-----------c-ccccCcEE-----eceeEEEEeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITE-----------A-TELSGRLT-----QSKDSITIRKT 173 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~-----------~-~~~~~~~~-----~~~~~l~i~~~ 173 (323)
.|....+.+|++++|.|...+ . ...+.|||... .... . ....+++. .....|.|.++
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 456677889999999999987 4 57899998432 1110 0 11134443 23568999999
Q ss_pred ecCCCeeEEEEEEcC
Q psy15235 174 TVDDAGQYSCRLIDP 188 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~ 188 (323)
+.+|+|.|.|.+ ..
T Consensus 80 ~~~Dsg~Y~Ca~-~~ 93 (110)
T cd05899 80 EPEDSAVYLCAS-SL 93 (110)
T ss_pred ChhhCEEEEEEe-eC
Confidence 999999999999 44
No 286
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.36 E-value=7.2e-06 Score=55.27 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=51.0
Q ss_pred CCeEEEEEEEecCCCC-cEEEEECCee----ee---c---------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 220 GEKLRLECLVVGSPPP-TVEWRIGNDT----YF---R---------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~-~~~W~~~~~~----~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
|++++|.|........ .+.|++.... +. . -.++..... .......|+|.+++.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS---LGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC---CCCCccEEEEeCCceeeeEEEE
Confidence 7899999997544333 6999985321 10 0 011222211 1124688999999999999999
Q ss_pred EEEeecccCCCCCceeEEEEEE
Q psy15235 283 CHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|.+...- .++....+.|.|
T Consensus 78 C~~~~~p---~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFP---DGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCC---CCCeeeEEEEEE
Confidence 9987543 144777777776
No 287
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.33 E-value=1.1e-05 Score=52.50 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=39.8
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeecccccc-----cc-CcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LS-GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
++|.|.+.+..| ...|+|+++|..+..... .. ..+ .....|.+.....++...|+|.+ .+..
T Consensus 2 ~~LtC~a~g~~P--~~~ItW~k~g~~l~~~~~~~~~~~~~~t~-~~~s~l~~~~~~~d~g~~~tC~v-~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKP--AANIKWRKGDQELEGAPTSVLEDGNGKTF-TVSSSVEFQVTREDDGAEITCSV-GHES 69 (83)
T ss_pred EEEEEEecCccC--CCEeEEEECCEECCCcceeEEECCCCCEE-EEEEEEEEEecchhCCCEEEEEE-ECcc
Confidence 689999999766 569999999988754110 00 001 11234445444556667999999 6663
No 288
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.32 E-value=6.1e-06 Score=53.55 Aligned_cols=62 Identities=24% Similarity=0.504 Sum_probs=41.4
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
++|.|.+.++.| ...|+|+|+|..+..... .++.+ .....|.+..-..++...|+|++ .+..
T Consensus 2 ~~LtC~a~gf~P--~~~itW~kng~~l~~~~~~~~~~~~~~t~-~~~s~L~~~~~~~d~g~~ytC~v-~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKP--AADIRWFKNDKEIKDVKYLKEEDANRKTF-TVSSTLDFRVDRSDDGVAIICRV-DHES 69 (83)
T ss_pred EEEEEEeCCccC--CCEEEEEECCEECcCceeeEeeCCCCCEE-EEEEEEEEEcccccCCCEEEEEE-echh
Confidence 689999999776 589999999998754111 01111 23345666544455666999999 6663
No 289
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.29 E-value=1e-05 Score=54.08 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=49.9
Q ss_pred eeEEeeCCeEEEEEEEec-CCCCc--EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235 214 TLTVIEGEKLRLECLVVG-SPPPT--VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVA 289 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~ 289 (323)
...+.+|+.++|.|.+.| .|.+. +.||+++..+.... +... .........+|++.. ..+|.| .|+|.|.+..
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~--~~~~-~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP--FGDN-TKSPVNAPATITITV-DREDHGANFSCETELDL 85 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce--eccc-cCCCceeEEEEEEec-chhhCCcEEEEEEEecc
Confidence 345678999999999965 57775 79999999886421 1110 011112456777764 455555 8999999988
Q ss_pred cC
Q psy15235 290 TR 291 (323)
Q Consensus 290 g~ 291 (323)
+.
T Consensus 86 ~~ 87 (100)
T cd05755 86 RP 87 (100)
T ss_pred Cc
Confidence 65
No 290
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.29 E-value=8e-06 Score=56.86 Aligned_cols=88 Identities=25% Similarity=0.352 Sum_probs=56.5
Q ss_pred eceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCe-----eee-c------------cCCeeeeecCCCCCCcceeEEEee
Q psy15235 212 VETLTVIEGEKLRLECLVV-GSPPPTVEWRIGND-----TYF-R------------SQGRIKLSEHPEKGTANSVLQIDE 272 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~-----~~~-~------------~~~~~~~~~~~~~~~~~~~L~i~~ 272 (323)
+....+.+|+++.|.|... ......+.|++... .+. . ..++..+.. +......+|+|.+
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSG--NGSQNNFSLTIKN 85 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEE--ETTTTEEEEEESS
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeee--cccCCeEEEEECC
Confidence 4456788999999999998 44556799998332 111 0 011222221 1112357899999
Q ss_pred cCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 273 v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
++.+|+|.|.|.+..... ......+.|+|
T Consensus 86 l~~~DsG~Y~C~v~~~~~---~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNE---QSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSE---EEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCC---CEECCcEEEEC
Confidence 999999999999998731 23445555544
No 291
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.29 E-value=4.3e-06 Score=58.50 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=51.1
Q ss_pred eceeEEeeCCeEEEEEEEecC-CCCcEEEEECC--eeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235 212 VETLTVIEGEKLRLECLVVGS-PPPTVEWRIGN--DTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMAD 277 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 277 (323)
+....+..|++++|.|..... ....+.|++.. ..+. ...+|+.+.. ........|+|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF--QKAQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE--eccCCEEEEEECCCCHHH
Confidence 445668899999999998653 45579999832 1110 1124444431 111136789999999999
Q ss_pred CeEEEEEEeec
Q psy15235 278 RGNYYCHGNNV 288 (323)
Q Consensus 278 ~G~y~C~a~n~ 288 (323)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999964
No 292
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.29 E-value=3.1e-06 Score=57.22 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=49.8
Q ss_pred EEeeCCeEEEEEEEec-CCCCcEEEEECCee-----e-------eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 216 TVIEGEKLRLECLVVG-SPPPTVEWRIGNDT-----Y-------FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
.+.+|++++|.|.... .+...+.|++.... + ....+++.+.... ......|+|.+++.+|+|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEEE
Confidence 5778999999999864 34557999985421 1 0112344443111 124678999999999999999
Q ss_pred EEEeecc
Q psy15235 283 CHGNNVA 289 (323)
Q Consensus 283 C~a~n~~ 289 (323)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9998754
No 293
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.29 E-value=1.2e-05 Score=53.96 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=48.6
Q ss_pred cEEEEEEeecCCCC-CCceEEEEECC--e--eccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235 124 PFTLKCNVTSPPPG-DDYQIVWYKGN--K--SITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 124 ~v~l~C~~~~~~~~-~~~~i~W~~~~--~--~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.++|.|......|. ...+|+|.+.. . .+.. ...+.+|+. ....+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58899998753321 13379998731 1 1110 122345554 2357899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEE
Q psy15235 185 LIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v 203 (323)
+...+.+ ..+..+.|.|
T Consensus 82 v~t~P~g--~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTG--NRESQLNLTV 98 (99)
T ss_pred EEeCCCC--CeEEEEEEEE
Confidence 9432432 3555556555
No 294
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.28 E-value=5.7e-06 Score=56.69 Aligned_cols=80 Identities=23% Similarity=0.403 Sum_probs=52.0
Q ss_pred CCcEEEEEEeecCCC----CCCceEEEEECC-----eecc----------ccccccCcEE-------eceeEEEEeeeec
Q psy15235 122 RVPFTLKCNVTSPPP----GDDYQIVWYKGN-----KSIT----------EATELSGRLT-------QSKDSITIRKTTV 175 (323)
Q Consensus 122 g~~v~l~C~~~~~~~----~~~~~i~W~~~~-----~~~~----------~~~~~~~~~~-------~~~~~l~i~~~~~ 175 (323)
|++++|.|...-.+. ...+.|.|.+.. .... ....+.+|.. ....+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 788999999653221 014799998741 1110 1234455554 2467999999999
Q ss_pred CCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
+|+|.|.|.+ ... .......+.|.|.
T Consensus 82 ~D~G~Y~C~v-~~g--~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEV-VLG--INDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEE-EEC--CcccEEEEEEEEE
Confidence 9999999999 443 3445666666654
No 295
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.27 E-value=4.4e-06 Score=56.13 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=45.1
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|+.++|.|.+.++.|. ...|+|+++|..+........... .....|.+.....++.+.|+|.+ .+.
T Consensus 12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v-~h~ 84 (95)
T cd00098 12 LGGSVTLTCLATGFYPP-DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVV-THE 84 (95)
T ss_pred cCCCeEEEEEEeeEECC-CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEE-EeC
Confidence 58899999999998543 479999999988865211000111 22334555555556899999999 665
No 296
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=6.8e-06 Score=57.53 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=50.4
Q ss_pred CCceeEEecCCcEEEEEEeec--CCCCCCceEEEEEC--Ceec----cc---------cccccCcEE----e--ceeEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYKG--NKSI----TE---------ATELSGRLT----Q--SKDSIT 169 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~--~~~~~~~~i~W~~~--~~~~----~~---------~~~~~~~~~----~--~~~~l~ 169 (323)
.|....+.+|++++|.|.+.+ .+ ...+.|||. +... .. ......|+. . ....|+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~---~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 80 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFS---TTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT 80 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCcc---ccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence 355666888999999999877 44 579999984 2211 00 011234554 2 467899
Q ss_pred EeeeecCCCeeEEEEEE
Q psy15235 170 IRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~ 186 (323)
|.+++.+|+|.|.|.+.
T Consensus 81 I~~~~~~Dsg~Y~C~~~ 97 (116)
T cd04982 81 IQNLEKEDSATYYCAYW 97 (116)
T ss_pred EEECCHHHCEEEEEEEe
Confidence 99999999999999993
No 297
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.26 E-value=1.2e-05 Score=53.36 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=42.3
Q ss_pred EeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 217 VIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
...++..+|.|.+.|+ |. ..++|.+||..+.............++. ...+.|.+. .++...|+|.+.+..
T Consensus 12 ~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 12 VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 3446678999999885 54 3799999998864321111111111111 123455554 345568999999976
No 298
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.26 E-value=3.8e-06 Score=57.77 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=46.5
Q ss_pred EEeeCCeEEEEEEEecCC-CCcEEEEECCee---------ee-cc-----------CCeeeeecCCCCCCcceeEEEeec
Q psy15235 216 TVIEGEKLRLECLVVGSP-PPTVEWRIGNDT---------YF-RS-----------QGRIKLSEHPEKGTANSVLQIDEA 273 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~---------~~-~~-----------~~~~~~~~~~~~~~~~~~L~i~~v 273 (323)
.+.+|++++|.|.+.+.. ...+.|++.... +. .. ..++.... ........|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECCC
Confidence 467899999999996543 447999984321 00 00 12332211 11113567999999
Q ss_pred CcCCCeEEEEEEeec
Q psy15235 274 TMADRGNYYCHGNNV 288 (323)
Q Consensus 274 ~~~d~G~y~C~a~n~ 288 (323)
+.+|+|.|.|...+.
T Consensus 80 ~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 80 KPEDSGTYFCMTVGS 94 (107)
T ss_pred CHHHCEEEEEeEcCC
Confidence 999999999998743
No 299
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.25 E-value=2.1e-05 Score=52.35 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=50.4
Q ss_pred eEEEEEEEecCCC-CcEEEEECCe----eee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 222 KLRLECLVVGSPP-PTVEWRIGND----TYF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 222 ~~~l~C~~~g~p~-~~~~W~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+++|.|.....+. ..++|.+... .+. .-.+|..+.. ......+|.|.+++.+|.|.|+|.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~---~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN---YSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC---CCCCccEEEEeCCCccccEEEEEE
Confidence 6889999864433 3699987421 111 0112333321 112478999999999999999999
Q ss_pred EeecccCCCCCceeEEEEEE
Q psy15235 285 GNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v 304 (323)
+.+.- .|+.++++.|+|
T Consensus 79 v~tfP---~G~~~~~~~l~~ 95 (96)
T cd05887 79 AVTFP---LGNTQSSTTVTV 95 (96)
T ss_pred EEeCC---CCCeeEEEEEEE
Confidence 87643 145788888876
No 300
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.24 E-value=4.4e-06 Score=57.34 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=48.3
Q ss_pred EecCCcEEEEEEeecC-CCCCCceEEEEECCe--e---ccc--------cccccCcEE----e--ceeEEEEeeeecCCC
Q psy15235 119 FEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNK--S---ITE--------ATELSGRLT----Q--SKDSITIRKTTVDDA 178 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~--~---~~~--------~~~~~~~~~----~--~~~~l~i~~~~~~d~ 178 (323)
+.+|+.++|.|.+... . ...+.|++... . +.. .....+++. . ....|+|.+++.+|+
T Consensus 3 v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 3 VSEGESVTLSCTYSGSFS---SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred ecCCCCEEEEEEEeCCcC---cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 5689999999999876 4 67999998432 1 100 112344554 1 467899999999999
Q ss_pred eeEEEEEEcCC
Q psy15235 179 GQYSCRLIDPK 189 (323)
Q Consensus 179 G~y~C~~~~~~ 189 (323)
|.|.|.+ .+.
T Consensus 80 G~Y~C~v-~~~ 89 (105)
T cd00099 80 AVYYCAV-SLS 89 (105)
T ss_pred EEEEEEE-ecC
Confidence 9999999 544
No 301
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.24 E-value=2.5e-05 Score=52.52 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=31.6
Q ss_pred cceeEEEeecCcCCCeEEEEEEee-cccCCCCCceeEEEEEE
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNN-VATRNSQPNEAFVYVRV 304 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n-~~g~~~~~~~~~~~l~v 304 (323)
....|+|.+++.+|.|.|+|.+.+ +.| +.+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g----~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTG----NRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCC----CeEEEEEEEE
Confidence 458899999999999999999999 564 4778888776
No 302
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.24 E-value=1.4e-05 Score=52.91 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=41.8
Q ss_pred EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCC--cceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+..|+..+|.|.+.|+ |.. .++|.+||..+. ......... ..++. ..+.|. +..++...|+|.+.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p-~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSF-SKDWTFYLLKSTE---FTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEE-CCCCCEEEEEEEE---ECCCCCCeEEEEEEECC
Confidence 3456778999999885 543 699999998875 221111111 11111 123333 44566778999999965
No 303
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.22 E-value=6.1e-06 Score=57.48 Aligned_cols=71 Identities=28% Similarity=0.493 Sum_probs=49.6
Q ss_pred CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCe-----ecc-c---------cccccCcEE------eceeEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNK-----SIT-E---------ATELSGRLT------QSKDSITI 170 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~-----~~~-~---------~~~~~~~~~------~~~~~l~i 170 (323)
.|....+.+|+++.|.|... ... ...+.|++... .+. . ...+.+++. ....+|.|
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSN---QSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSS---GSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCC---cceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 35556688999999999998 333 67999998322 111 0 122233332 23568999
Q ss_pred eeeecCCCeeEEEEEE
Q psy15235 171 RKTTVDDAGQYSCRLI 186 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~ 186 (323)
.+++.+|+|.|.|.+.
T Consensus 84 ~~l~~~DsG~Y~C~v~ 99 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVS 99 (114)
T ss_dssp SSESGGGEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEE
Confidence 9999999999999994
No 304
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=6.5e-06 Score=56.54 Aligned_cols=71 Identities=18% Similarity=0.395 Sum_probs=48.8
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc-c----ccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE-A----TELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~-~----~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+... ...+.|||.. .. +.. . .....++. .....|.|.+++.+|+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 566677899999999999876432 3589999842 11 110 0 00123444 2446799999999999
Q ss_pred eeEEEEE
Q psy15235 179 GQYSCRL 185 (323)
Q Consensus 179 G~y~C~~ 185 (323)
|.|.|.+
T Consensus 84 g~Y~Ca~ 90 (106)
T cd04980 84 AVYYCQQ 90 (106)
T ss_pred EEEEEEE
Confidence 9999998
No 305
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.22 E-value=2.2e-05 Score=53.20 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=47.4
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCe-----eccc---------cccccCcEE------eceeEEEEeeeecCCCeeEEE
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE---------ATELSGRLT------QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~---------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C 183 (323)
+++|.|......+.....|.|+|... .+.. ...+.+|.. ....+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 58999988653321135899998321 1110 112234443 236789999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEE
Q psy15235 184 RLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v 203 (323)
.+...+.+. .+....|.|
T Consensus 82 ~v~~~p~g~--~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGN--FEAELVLTV 99 (100)
T ss_pred EEEeCCCCC--eeeEEEEEe
Confidence 994334332 355555544
No 306
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.21 E-value=1.4e-05 Score=53.30 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=40.3
Q ss_pred CCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 220 GEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 220 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
++.++|.|.+.|+ |+. .++|++++................++. ...+.|.+.. .+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence 6789999999886 554 799999986332111111111001111 1234455443 47789999999977
No 307
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.21 E-value=2.3e-05 Score=53.88 Aligned_cols=80 Identities=28% Similarity=0.437 Sum_probs=51.4
Q ss_pred CCcEEEEEEeecCCC--------CCCceEEEEEC-----Ce-----ec--------cccccccCcEE-------eceeEE
Q psy15235 122 RVPFTLKCNVTSPPP--------GDDYQIVWYKG-----NK-----SI--------TEATELSGRLT-------QSKDSI 168 (323)
Q Consensus 122 g~~v~l~C~~~~~~~--------~~~~~i~W~~~-----~~-----~~--------~~~~~~~~~~~-------~~~~~l 168 (323)
|.+++|.|...-.|. .+...|+|++- +. .+ .....+.+|.. ....+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999874331 12569999873 11 11 00133445554 246899
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.|.+++..|+|.|.|.+ ... .......+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V-~~g--~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEV-MHG--IEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEE-EEC--CcccEEEEEEEEE
Confidence 99999999999999999 444 3344555555553
No 308
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.21 E-value=1.7e-05 Score=54.51 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=44.8
Q ss_pred EEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC--CCcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235 216 TVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK--GTANSVLQIDEATMADRG-NYYCHGNNVA 289 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G-~y~C~a~n~~ 289 (323)
....|+.++|.|.+.|+ |. ..++|++||..+.......... .++ ....+.|.+.. ...|.| .|+|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~--~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPE--GDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeC--CCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 34568889999999775 64 4899999999875322211111 111 12345566664 334444 5999999976
No 309
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.20 E-value=1.3e-05 Score=51.12 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=42.9
Q ss_pred eEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 222 KLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 222 ~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.++|.|.+.|. |. ..+.|++||..+.............++ ....+.|.+.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999876 55 489999999864321111111100111 1235667776666677789999999876
No 310
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.19 E-value=1.1e-05 Score=56.43 Aligned_cols=72 Identities=26% Similarity=0.443 Sum_probs=50.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT------QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~ 176 (323)
.+....+..|++|+|.|....... ...+.|||. +..... ....++|+. .....|+|.+++.+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWT--NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCC--ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 455666889999999999876422 568999983 221100 112345554 23568999999999
Q ss_pred CCeeEEEEEE
Q psy15235 177 DAGQYSCRLI 186 (323)
Q Consensus 177 d~G~y~C~~~ 186 (323)
|+|.|.|.+.
T Consensus 83 Dsg~Y~C~~~ 92 (116)
T cd07706 83 DSAKYFCALS 92 (116)
T ss_pred HCEEEEEEEE
Confidence 9999999994
No 311
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.18 E-value=2.2e-05 Score=52.29 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=42.9
Q ss_pred EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+..|+.++|.|.+.|+ |.. .++|++||..+........... ..++ ...+.|.+. .++...|+|.+.+..
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~-~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~ 83 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIP-NGDWTYQILVMLETT---PSRGDTYTCVVEHSS 83 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEE-CCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence 4468899999999885 554 7999999988653211111110 1111 123444443 345668999999987
No 312
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.17 E-value=0.00079 Score=55.95 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=86.8
Q ss_pred EEEeeccc--CcceEEEeeccCCccc--eeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 82 YSIHEAIL--ESGYVQSSLFIPRMNA--ITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 82 l~i~~~~~--~G~Y~C~~~~~~~~~~--~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
|.|..++. +|.|+-...+..+... ..+.+.. .|.+.+ +-+|+...-.|.+..+.|.....+.||+|+.++
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V 263 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV 263 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 77777766 9999999765444221 1111111 333322 557999999999988665546799999999887
Q ss_pred cccccccCcEE-eceeEEEEeeeecCCC------eeEEEEEEcCCCCC--CCCceeeeeEEEecceeeeeceeEEeeCCe
Q psy15235 152 TEATELSGRLT-QSKDSITIRKTTVDDA------GQYSCRLIDPKSTN--TTPLAQADFDVIMKPTAKLVETLTVIEGEK 222 (323)
Q Consensus 152 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~------G~y~C~~~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~ 222 (323)
........... ....-..+.-++.++. -..+|.+.-+.... ....+...-.|..+|.+++. +..|
T Consensus 264 ~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~----F~dG-- 337 (466)
T PHA03270 264 FAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME----FGGD-- 337 (466)
T ss_pred cCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE----EeCC--
Confidence 53111111111 1111112222333322 26799996333222 22344444456666766532 2223
Q ss_pred EEEEEEEecCC-CCcEEEEECCeeeec
Q psy15235 223 LRLECLVVGSP-PPTVEWRIGNDTYFR 248 (323)
Q Consensus 223 ~~l~C~~~g~p-~~~~~W~~~~~~~~~ 248 (323)
...|.+.=-| ...+.|+.++.....
T Consensus 338 -~AVCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 338 -EAVCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred -EEEEeccccCCCCEEEEEecCCCCCC
Confidence 3446663233 447999987765543
No 313
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.16 E-value=2.7e-05 Score=51.89 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=43.5
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCe----eccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNK----SITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
+.++|.|....... ..+++|.|... .+.. ...+.+|+. ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~~vtL~C~~~~~~~--~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKTGV--LIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCCCc--EEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEE
Confidence 46899998865332 57899988422 1211 122334444 2357899999999999999999
Q ss_pred EEcCC
Q psy15235 185 LIDPK 189 (323)
Q Consensus 185 ~~~~~ 189 (323)
+..-+
T Consensus 79 ~~t~P 83 (96)
T cd05889 79 LVTYP 83 (96)
T ss_pred EEeCC
Confidence 95444
No 314
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.14 E-value=2.2e-05 Score=55.11 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=49.4
Q ss_pred eeceeEEeeCCeEEEEEEEecCC------CCcEEEEECCee------ee-c---------cCCeeeeecCCCCCCcceeE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSP------PPTVEWRIGNDT------YF-R---------SQGRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~~~~~~------~~-~---------~~~~~~~~~~~~~~~~~~~L 268 (323)
.|....+.+|+.++|.|.....+ ...+.|++.... +. . ..+|+.... +.......|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~--~~~~~~~sL 82 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG--DLGKKNCSL 82 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec--CCCCCEEEE
Confidence 45566788999999999875221 235999985321 10 0 012333321 112246789
Q ss_pred EEeecCcCCCeEEEEEEeec
Q psy15235 269 QIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~ 288 (323)
+|.+++.+|+|.|.|.+...
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 83 LISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEccCChhhCeEEEEEEEcC
Confidence 99999999999999998764
No 315
>KOG1480|consensus
Probab=98.13 E-value=1.4e-06 Score=76.62 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=115.0
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCC-CceEEEEECCeecc--ccccccCcEEeceeEEEEeeeecCC---Ce
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDD---AG 179 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d---~G 179 (323)
.-+.+...|....+..+.++.|.|.+...+... .+.=.|..+..... ..+...++- -....+.|...+.++ ..
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~-~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG-VREVSIDISRQQVETSGGPE 101 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee-EEeeeeeeehhhhhcccCcc
Confidence 344555577777788899999999987655110 12233544332111 111111110 111122222222222 22
Q ss_pred eEEEEE--EcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeee
Q psy15235 180 QYSCRL--IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLS 256 (323)
Q Consensus 180 ~y~C~~--~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~ 256 (323)
.|.|+. +..........+.+.+.+..+-....+....|..+....+.|.. .+.|...++|++++..+.. .......
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~~ 180 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIRA 180 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchhh
Confidence 476655 22221111111111222222233334445667788889999988 6778889999999987765 3333222
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhh
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVE 315 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~ 315 (323)
....|++..+...|.|+|+|+|.|..+. ..+....+.+.|.+.-..+..+.
T Consensus 181 -------~d~~li~~~arlsd~~nytc~a~ni~~~-r~~~~~~v~vyv~ggwsswt~w~ 231 (909)
T KOG1480|consen 181 -------SDHNLIISQARLSDSGNYTCEATNIVAK-RKSDPATVQVYVNGGWSEWTEWS 231 (909)
T ss_pred -------hcCCccccchhhhhcccceeeeehhhcc-ccccceEEEEEEcCcccccccce
Confidence 3677999999999999999999999877 35677788888888877665544
No 316
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.13 E-value=1.2e-05 Score=54.28 Aligned_cols=64 Identities=19% Similarity=0.418 Sum_probs=44.9
Q ss_pred EecCCcEEEEEEeecC--CCCCCceEEEEECC--eec---cc-----cccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 119 FEYRVPFTLKCNVTSP--PPGDDYQIVWYKGN--KSI---TE-----ATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~--~~~~~~~i~W~~~~--~~~---~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
+.+|++++|.|...+. . ...+.||+.. ... .. .....+++. .....|+|.+++.+|+|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~---~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 3 VSPGETVTITCTGSSGNIS---GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred cCCCCCEEEEEEEcCCCcC---CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence 5679999999998764 3 4679999832 111 10 011233554 34567999999999999999
Q ss_pred EEE
Q psy15235 183 CRL 185 (323)
Q Consensus 183 C~~ 185 (323)
|.+
T Consensus 80 C~~ 82 (98)
T cd04984 80 CQV 82 (98)
T ss_pred EEE
Confidence 998
No 317
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.12 E-value=2e-05 Score=49.17 Aligned_cols=66 Identities=30% Similarity=0.583 Sum_probs=46.4
Q ss_pred EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+.|.|.+.+.+...+.|++++......... ..............|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999987777789999988765422111 000001122357889999999999999999999876
No 318
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.12 E-value=1.2e-05 Score=54.34 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=43.2
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
...++.++|.|.+.+..|. ...|+|++||..+........... .....|.+..-...+...|+|.+ .+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V-~H~ 88 (100)
T cd07699 14 LEKSGKATLVCLINDFYPG-FATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEV-THE 88 (100)
T ss_pred HccCCCcEEEEEEEeEECC-CCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEE-Eec
Confidence 3357789999999997765 579999999998754211111111 12233434333333456999999 665
No 319
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.10 E-value=9.5e-06 Score=54.83 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=45.0
Q ss_pred eCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 219 EGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.++.++|.|.+.|. | ...++|++||..+.............++ ....+.|.+..-..++...|+|.+.+..
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 46779999999875 5 4479999999987422111111110111 1234566666555555678999999976
No 320
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.08 E-value=3.7e-05 Score=48.96 Aligned_cols=63 Identities=21% Similarity=0.449 Sum_probs=39.8
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++|.|.+.++.|. ...+.|+|||.++...... ++.+ .....|.+.....++...|+|.+ .+.
T Consensus 1 ~~~L~C~a~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~-~~~s~L~v~~~~~~~~~~~tC~V-~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPP-DITVTWLRNGQEVTSGVSTTDPLKNSDGTY-FLSSYLTVSASTWESGDTYTCQV-THE 70 (75)
T ss_pred CeEEEEEEEeEeCC-CCEEEEEECCEECCCCEEECceEECCCCCE-EEEEEEEEccccCCCCCEEEEEE-EEc
Confidence 36899999998654 4799999999874431111 1111 22334555444556667999999 554
No 321
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.08 E-value=1.7e-05 Score=54.10 Aligned_cols=67 Identities=24% Similarity=0.431 Sum_probs=45.0
Q ss_pred EeeCCeEEEEEEEecCCCCcEEEEECCee-------ee---cc-----------CCeeeeecCCCCCCcceeEEEeecCc
Q psy15235 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDT-------YF---RS-----------QGRIKLSEHPEKGTANSVLQIDEATM 275 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-------~~---~~-----------~~~~~~~~~~~~~~~~~~L~i~~v~~ 275 (323)
+.+|++++|.|.........+.|++.... +. .. ..++... . ......|+|.+++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~--~~~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--R--SSNSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--e--cCCEEEEEECCCCH
Confidence 56899999999986544456999984421 10 00 1122221 1 11456799999999
Q ss_pred CCCeEEEEEEee
Q psy15235 276 ADRGNYYCHGNN 287 (323)
Q Consensus 276 ~d~G~y~C~a~n 287 (323)
+|+|.|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999999874
No 322
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.04 E-value=0.0014 Score=55.13 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=87.4
Q ss_pred EEEEEeeccc--CcceEEEeeccCCcc--ceeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235 80 FKYSIHEAIL--ESGYVQSSLFIPRMN--AITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK 149 (323)
Q Consensus 80 ~~l~i~~~~~--~G~Y~C~~~~~~~~~--~~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~ 149 (323)
+.|.|..++. +|.|+-...+..+.. .....+.. .|.+.+ +-+|+...-.|.+..+.|.....+.|++||.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 6678887766 999997765443321 11111111 233222 5579999999999886655467999999999
Q ss_pred eccccccccCcEE-------eceeEEEEeeeec-CCCeeEEEEEEcCCCCCCCC--ceeeeeEEEecceeeeeceeEEee
Q psy15235 150 SITEATELSGRLT-------QSKDSITIRKTTV-DDAGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTAKLVETLTVIE 219 (323)
Q Consensus 150 ~~~~~~~~~~~~~-------~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~ 219 (323)
++.....-.+... ...+.|++..... +..-..+|.+.-+....... .+...-.|..+|.+++. ...
T Consensus 278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~----F~~ 353 (486)
T PHA03273 278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT----VED 353 (486)
T ss_pred eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE----EeC
Confidence 8872111011111 2223344433221 22336899996444222222 23444456667766532 223
Q ss_pred CCeEEEEEEEecCCC--CcEEEEECCe
Q psy15235 220 GEKLRLECLVVGSPP--PTVEWRIGND 244 (323)
Q Consensus 220 g~~~~l~C~~~g~p~--~~~~W~~~~~ 244 (323)
| ...|.+.=-|. ..+.|+.++.
T Consensus 354 G---~AVCtA~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 354 G---DAVCTAKCVPSTGVFVSWSVNDH 377 (486)
T ss_pred C---EEEEecccccCCCeeEEEEccCC
Confidence 3 34577643443 6899998773
No 323
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.04 E-value=4.1e-05 Score=53.72 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred eEEEeeceEEecCCcEEEEEEec-c-------CceEEEEEcCc-----ccee-ec--------cCcceEEEeeeeCCeEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILT-I-------FEQVKWQLNGR-----NINQ-SS--------VDSGFAATANLTEDNFK 81 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~-~-------~~~v~W~~~g~-----~~~~-~~--------~~~~~~~~~~~~~~~~~ 81 (323)
.++.|..+.+.+|++|+|.|... + ...+.|++... .+.. .. ...+.....+...+++.
T Consensus 2 ~vq~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 2 GLWMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred cccCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 45667778999999999999843 2 24689999431 1111 10 11111222244566777
Q ss_pred EEEeeccc--CcceEEEeecc
Q psy15235 82 YSIHEAIL--ESGYVQSSLFI 100 (323)
Q Consensus 82 l~i~~~~~--~G~Y~C~~~~~ 100 (323)
|.|.+++. +|.|.|.+...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 88877655 99999998653
No 324
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.02 E-value=2.6e-05 Score=54.46 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=47.6
Q ss_pred eceeEEeeCCeEEEEEEEecCC--CCcEEEEECC--ee---ee---c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235 212 VETLTVIEGEKLRLECLVVGSP--PPTVEWRIGN--DT---YF---R----------SQGRIKLSEHPEKGTANSVLQID 271 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~---~~---~----------~~~~~~~~~~~~~~~~~~~L~i~ 271 (323)
+....+.+|++++|.|...+.. ...+.||+.. +. +. . ..+++.... ........|+|.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~ 81 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--DTSKSTVYLQLN 81 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--EccCCEEEEEEC
Confidence 4456788999999999986432 3469999832 11 10 0 012232221 011123579999
Q ss_pred ecCcCCCeEEEEEEee
Q psy15235 272 EATMADRGNYYCHGNN 287 (323)
Q Consensus 272 ~v~~~d~G~y~C~a~n 287 (323)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999999875
No 325
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.01 E-value=0.00011 Score=49.00 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=46.9
Q ss_pred CeEEEEEEEecC-CCCcEEEEECCe----eee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 221 EKLRLECLVVGS-PPPTVEWRIGND----TYF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 221 ~~~~l~C~~~g~-p~~~~~W~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
+.++|.|..... ....+.|.+... .+- .-.+|....... ....+|+|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~---~~d~sI~i~nvt~~D~G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST---REDMSLSFNNATEEDVGLYCC 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC---CCccEEEEcCCCcccCEEEEE
Confidence 468899998532 234689988432 110 001233332111 146899999999999999999
Q ss_pred EEeecccCCCCCceeEEEE
Q psy15235 284 HGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l 302 (323)
.+...- .|+.++.+.|
T Consensus 78 ~~~t~P---~g~~~~~i~~ 93 (96)
T cd05889 78 SLVTYP---QGSWEKVIEV 93 (96)
T ss_pred EEEeCC---CCCeEEEEEE
Confidence 998753 1335555554
No 326
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.98 E-value=6e-05 Score=48.28 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=45.0
Q ss_pred EEecCCcEEEEEEeecCC-CCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 118 VFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+-.|++++|+|.....+ | .+.|+|...+...-. .......+|.+.++...|+|.++|.++
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p--~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLP--AFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred eeecCCcEEEEEecCCCCCC--CccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEE
Confidence 455799999999996643 1 349999876544221 001356789999999999999999994
No 327
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.96 E-value=8.8e-05 Score=49.57 Aligned_cols=71 Identities=15% Similarity=0.342 Sum_probs=42.1
Q ss_pred EeeCCeEEEEEEEecC--CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 217 VIEGEKLRLECLVVGS--PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+..|+.++|+|.+.|. |+. .++|.+|++......... .. ...++ ...+.|.+..-..++.-.|+|.+.+..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~-~~-~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQP-PE-SHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecc-cc-cCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4458899999999887 443 699999875432111110 01 01111 123555555444334457999999987
No 328
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.95 E-value=6.5e-05 Score=50.73 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=46.3
Q ss_pred eEEecCCcEEEEEEec---cCceEEEEEcCccc--ee--------eccCcceEEEeeeeCCeEEEEEeeccc--CcceEE
Q psy15235 31 TEIMEGAPINISCILT---IFEQVKWQLNGRNI--NQ--------SSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQ 95 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~--~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C 95 (323)
+.+.+|++|+|.|... ....+.|+|....- .. .....+..+..+...+.+.|.|.+++. +|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 4688999999999944 34679999953211 00 011222233333446778888888865 999999
Q ss_pred EeeccC
Q psy15235 96 SSLFIP 101 (323)
Q Consensus 96 ~~~~~~ 101 (323)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997544
No 329
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.92 E-value=0.00014 Score=48.18 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=46.3
Q ss_pred eeEEeeCCeEEE-EEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 214 TLTVIEGEKLRL-ECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 214 ~~~~~~g~~~~l-~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
...+.+|+.+.+ .|.+ .|.|.+.|+|+.+...... .......++ ....+.+.+.....+|.-.++|.+.+..
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~----~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE----SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc----eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 345678899999 9999 6779999999976322110 001100111 1234677776666666668999999986
No 330
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.91 E-value=0.00013 Score=50.18 Aligned_cols=66 Identities=15% Similarity=0.364 Sum_probs=41.3
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-----cc-CcEEeceeEEEEeeeecCCCe-eEEEEEEcCC
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LS-GRLTQSKDSITIRKTTVDDAG-QYSCRLIDPK 189 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~-~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~ 189 (323)
..|+.++|.|.+.++.|. ...++|+|||..+..... .+ ..| .....|.+.. ...|.| .|+|.+ .+.
T Consensus 19 ~~g~~~tL~C~a~gF~P~-~i~v~W~kng~~~~~~~~~~~p~~d~~ty-~~~S~L~~~~-~~~d~~~~ytC~V-~H~ 91 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPR-DITVKWLKNGNELSAEQPNITPEGDSVSY-NVTSTVQVKL-TEDDVHSQVTCEV-QHR 91 (111)
T ss_pred CCCCCEEEEEEEeeEeCC-CCEEEEEECCEECcccccceeeCCCCCcE-EEEEEEEEEC-ccccccCceEEEE-EeC
Confidence 357889999999998764 479999999998754100 01 011 1233344443 233434 599999 665
No 331
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.91 E-value=6.9e-05 Score=49.84 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=43.6
Q ss_pred eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..+.++|.|.+.|. |. ..++|++||..+........... +.++ ...+.|.+..-...+...|+|.+.+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~-~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQK-EEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEE-CCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 35668999999885 54 47999999987632111110110 1111 234566666554456678999999977
No 332
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.89 E-value=0.00019 Score=47.83 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=41.1
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEE---EeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT---IRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|+.++|.|.+.++.|. ...++|++||..+...............++. .-.+...+...|+|.+ .+.
T Consensus 13 ~~~~~~L~C~~~gFyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V-~H~ 82 (94)
T cd05766 13 LSHPHLLVCHVWGFYPP-EITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVV-EHS 82 (94)
T ss_pred CCCCeEEEEEEeeecCC-CCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEE-EeC
Confidence 57889999999997765 5799999999887552111111111111111 1123344566899999 565
No 333
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.88 E-value=5.1e-05 Score=51.38 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.0
Q ss_pred eeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe-eeeecCCC-CC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 218 IEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR-IKLSEHPE-KG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~-~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..+..++|.|.+.|+ |.. .++|++||..+...... .......+ ++ ...+.|.+..-...+...|+|.+.+..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 346789999999886 443 68999999886532100 00010010 11 234566665444445568999999976
No 334
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.88 E-value=0.00013 Score=48.63 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=46.4
Q ss_pred CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235 220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297 (323)
Q Consensus 220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~ 297 (323)
.....+.|.+ .|.|.+.|.|+++.... .........++ ....++|.+.....+|.-.|+|.+.|..-. ....
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~--~~~~ 88 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGE----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ--EPQR 88 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCc----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC--CCeE
Confidence 3467899999 67899999999971110 01111110111 123567777655555556899999998744 2344
Q ss_pred eEEEEE
Q psy15235 298 AFVYVR 303 (323)
Q Consensus 298 ~~~~l~ 303 (323)
..+.|.
T Consensus 89 ~~~~L~ 94 (95)
T cd05719 89 FSVTLN 94 (95)
T ss_pred EEEEee
Confidence 555544
No 335
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.86 E-value=5.6e-05 Score=51.59 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=44.2
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECC----eec---c-c-c---c------cccCcEE----eceeEEEEeeeecC
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGN----KSI---T-E-A---T------ELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~---~-~-~---~------~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
+..|++|+|.|...... ...+.||+.. ... . . . . ....++. .....|+|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 3 AELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred ccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 56899999999886554 4679999832 111 1 0 0 0 0123443 34567999999999
Q ss_pred CCeeEEEEE
Q psy15235 177 DAGQYSCRL 185 (323)
Q Consensus 177 d~G~y~C~~ 185 (323)
|+|.|.|.+
T Consensus 80 DsgtY~Ca~ 88 (104)
T cd05720 80 NEGYYFCSV 88 (104)
T ss_pred HCEEEEEEE
Confidence 999999998
No 336
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.86 E-value=8.7e-05 Score=48.32 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=44.0
Q ss_pred eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.++.+.|.|.+.|+ |.. .+.|++++..+.............++ ....+.|.+. ..+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999875 644 69999999887532211111100111 1234556666 5556689999999873
No 337
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.86 E-value=0.00027 Score=46.95 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=40.4
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++..+|.|.+.++.|. ...++|.+||..+........... .....|.+ .+.+...|+|.+ .+.
T Consensus 14 ~~~~~tL~C~a~gFyP~-~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V-~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPP-VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIV-EHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECC-cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEE-EeC
Confidence 35668999999997765 579999999988754211111111 11223333 345566999999 555
No 338
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.85 E-value=0.00012 Score=44.02 Aligned_cols=51 Identities=20% Similarity=0.469 Sum_probs=36.2
Q ss_pred eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
..|.+|+|+|...+. .+.|.+|+..+... ...+.+.+-. +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC---------------CceEEeeccC-CCCceEEEEeCC
Confidence 458999999986522 39999998655432 2334444555 889999999964
No 339
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.85 E-value=9.2e-05 Score=50.87 Aligned_cols=66 Identities=17% Similarity=0.398 Sum_probs=43.8
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCee---------ccc--------cccc-cCcEE------eceeEEEEeee
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS---------ITE--------ATEL-SGRLT------QSKDSITIRKT 173 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~---------~~~--------~~~~-~~~~~------~~~~~l~i~~~ 173 (323)
.+.+|++++|.|...+... ...+.|||.... +.. .... ..++. .....|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 3678999999999866331 358999983211 000 0001 23343 22457999999
Q ss_pred ecCCCeeEEEEE
Q psy15235 174 TVDDAGQYSCRL 185 (323)
Q Consensus 174 ~~~d~G~y~C~~ 185 (323)
+.+|+|.|.|..
T Consensus 80 ~~~Dsg~YyCa~ 91 (107)
T cd07700 80 KPEDSGTYFCMT 91 (107)
T ss_pred CHHHCEEEEEeE
Confidence 999999999998
No 340
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.84 E-value=0.0001 Score=50.88 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=46.3
Q ss_pred eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCC--CCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPE--KGTANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
.++.++|.|.+.|+ |.. .++|++|+..+............+. .....+.|.+...+..+ ...|+|.+.+....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 46779999999876 553 7999999988653211110110011 11245677777666555 45799999998743
No 341
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.84 E-value=0.0073 Score=51.23 Aligned_cols=202 Identities=17% Similarity=0.246 Sum_probs=105.7
Q ss_pred eeeCCeEEEEEeeccc--CcceEEEeeccCCc---cceeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceE
Q psy15235 74 NLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM---NAITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQI 142 (323)
Q Consensus 74 ~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~---~~~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i 142 (323)
....+.+.|.|.+++. +|.|+-.+.+.... ....+.+.. .|.+.+ +-+|+...-.|.+..+.|.....+
T Consensus 283 ~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 283 RKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEE
Confidence 3346677788888776 99998776532221 111122221 333222 557999999999988765546799
Q ss_pred EEEECCeeccccccccCcEE-------eceeEEEEeeeecCC--CeeEEEEEEcCCCCCCCC--ceeeeeEEEecceeee
Q psy15235 143 VWYKGNKSITEATELSGRLT-------QSKDSITIRKTTVDD--AGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTAKL 211 (323)
Q Consensus 143 ~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d--~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~~~ 211 (323)
+||+|+.++.... -...+. ...+.|++......| .-..+|.+.-........ .+...-.|..+|.+++
T Consensus 363 rWf~ng~~V~~~~-it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm 441 (566)
T PHA03269 363 KWTSNFGNIGKNF-ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI 441 (566)
T ss_pred EEEeCCcccCccc-cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE
Confidence 9999988876410 011111 222333332211111 235699996444322222 3444455666776653
Q ss_pred eceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEee---cCcCCC-eEEEEEE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE---ATMADR-GNYYCHG 285 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---v~~~d~-G~y~C~a 285 (323)
. ...| ...|.+.=-| ...+.|+.++....+. ....... -....+...|.. +..+|. -+|+|.+
T Consensus 442 ~----FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~-~t~itG~---C~ehPGLVNLRS~~pLS~~dgpveYTCrL 510 (566)
T PHA03269 442 E----IIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHE-NSEILGV---CDNNKRFVNLQSSCDTSELDGPITYSCHL 510 (566)
T ss_pred E----EeCC---EEEEecccccCCCceEEEEecCCCCCCc-cceeecc---CCCCCCceeecccccccccCCceeEEEEE
Confidence 2 2233 3456664333 3479999877663322 1111110 001233344444 333332 4799998
Q ss_pred ee
Q psy15235 286 NN 287 (323)
Q Consensus 286 ~n 287 (323)
..
T Consensus 511 ~G 512 (566)
T PHA03269 511 DG 512 (566)
T ss_pred ee
Confidence 75
No 342
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.84 E-value=0.00013 Score=48.42 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=44.9
Q ss_pred CeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 221 EKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 221 ~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
....+.|.+ .|.|.+.|+|+++..... .. ......++. ...+.|.+.....+|...|+|.+.|..-+ .....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~---~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~--~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA---NT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ--EPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe---eE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC--CCeEE
Confidence 457899988 567999999998721110 00 111001111 23567777666666666899999998744 22444
Q ss_pred EEEE
Q psy15235 299 FVYV 302 (323)
Q Consensus 299 ~~~l 302 (323)
.+.|
T Consensus 90 ~~~l 93 (95)
T cd07703 90 PVTL 93 (95)
T ss_pred EEEE
Confidence 4444
No 343
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.81 E-value=0.00028 Score=47.01 Aligned_cols=66 Identities=21% Similarity=0.456 Sum_probs=39.4
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEE---EEeeeecCCCeeEEEEEEcCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI---TIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++.++|.|.+.++.|. ...++|+++|................+..+ ..-.+...+.+.|+|.+ .+.
T Consensus 14 ~~~~~L~C~a~gF~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V-~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPR-DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRV-EHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCC-CcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEE-EeC
Confidence 6789999999997653 469999999864322111111111111111 12233445778999999 565
No 344
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.80 E-value=0.0003 Score=46.56 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=41.6
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE---eeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI---RKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~ 189 (323)
.|+..+|.|.+.++.|. ...++|.|||..+. ...........+.++.+ -.+...+...|+|.+ .+.
T Consensus 14 ~g~~~~L~C~a~gFyP~-~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V-~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPP-DIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRV-RHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCC-CCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEE-EEC
Confidence 46667999999997665 57999999999875 22222222111222222 123456667899999 554
No 345
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.79 E-value=0.00013 Score=48.58 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=39.6
Q ss_pred eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.++.++|.|.+.|. |.. .++|.+||..+.......... +++. ...+.|++..-. ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~--~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKD--KDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEe--cCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 46779999999885 544 699999998764221111111 1111 123455555332 2335999999955
No 346
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.78 E-value=0.00015 Score=48.19 Aligned_cols=67 Identities=12% Similarity=0.350 Sum_probs=41.0
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+.++|.|.+.++.|. ...|+|++||..+........... .....|.+..-...+...|+|.+ .+.
T Consensus 13 ~~~~~~L~C~a~gFyP~-~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V-~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPG-TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKV-THQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECC-CCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEE-EEC
Confidence 45679999999997765 579999999988633111111111 22233444433223556899999 555
No 347
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.75 E-value=0.00012 Score=47.35 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=39.8
Q ss_pred eEEEEEEEecCCCC--cEEEEECCe--e---ee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 222 KLRLECLVVGSPPP--TVEWRIGND--T---YF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 222 ~~~l~C~~~g~p~~--~~~W~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
+++|.|.+.....+ .+.|++... . +. ...+|+...... ......|.|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence 37899998655443 799988442 1 11 012344433211 124688999999999999999
Q ss_pred EEE
Q psy15235 283 CHG 285 (323)
Q Consensus 283 C~a 285 (323)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 348
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.69 E-value=0.022 Score=47.43 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=86.4
Q ss_pred EeeeeCCeEEEEEeeccc--CcceEEEeeccCCccc--eeeeeee---CCceeE----EecCCcEEEEEEeecCCCCCCc
Q psy15235 72 TANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNA--ITGNYDI---EPKYKV----FEYRVPFTLKCNVTSPPPGDDY 140 (323)
Q Consensus 72 ~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~--~~~~~~~---~~~~~~----~~~g~~v~l~C~~~~~~~~~~~ 140 (323)
-.+....+..+.|.++.. +|.|+-...+...... ......+ .|.+.+ +-.|+...-.|.+..+.|....
T Consensus 199 ~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~Sv 278 (490)
T PHA03271 199 WINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSV 278 (490)
T ss_pred eeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCce
Confidence 334446667777877755 8866444433222211 1111111 332222 4579999999999886654467
Q ss_pred eEEEEECCeeccccccccCcE--E------eceeEEEEeeeecCCCeeEEEEEEcCCCC-CCCCceeeeeEEEecceeee
Q psy15235 141 QIVWYKGNKSITEATELSGRL--T------QSKDSITIRKTTVDDAGQYSCRLIDPKST-NTTPLAQADFDVIMKPTAKL 211 (323)
Q Consensus 141 ~i~W~~~~~~~~~~~~~~~~~--~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~p~~~~ 211 (323)
.++|++||.++......+... . ....++.+.+...+..-..+|.+.-.... .....++..-.|..+|.+++
T Consensus 279 rlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv 358 (490)
T PHA03271 279 YVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL 358 (490)
T ss_pred EEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE
Confidence 999999998775422212221 0 11223333332222233789999633321 11123333334555665543
Q ss_pred eceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeee
Q psy15235 212 VETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTY 246 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~ 246 (323)
. ...| .-.|.+.=-| ...+.|+.++...
T Consensus 359 ~----FedG---~AVCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 359 A----FKDG---YAICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred E----EeCC---EEEEeccccCCCcEEEEEecCCCC
Confidence 2 3333 3346653222 4589999877654
No 349
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.68 E-value=0.00022 Score=47.13 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=41.5
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccc-----cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|+.+.|.|.+.+..| .+.|+|+.++..+.. ..............|.+..-..++...++|.+ .+.
T Consensus 14 ~~~~~~~C~s~~~~P--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~-~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYP--PPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA-SHP 83 (89)
T ss_dssp TEEEEEEEEEEEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE-EET
T ss_pred ceEEEEEEEeCCeEC--CeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE-ECC
Confidence 689999998877655 789999999877721 00001111133456666655455677999999 555
No 350
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.66 E-value=0.00028 Score=45.92 Aligned_cols=63 Identities=30% Similarity=0.554 Sum_probs=41.2
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++.++|.|.+.++.|. ...|.|+++|..+...... ++.| .....|.+. ..+...|+|.+ .+.
T Consensus 7 ~~~~~~L~C~v~~f~P~-~i~v~W~~~~~~~~~~~~~~~~~~~~dgty-~~~s~l~v~---~~~~~~ysC~V-~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPK-DITVTWLKNGKEVTEGVETTPPPPNSDGTY-SVTSSLTVT---WNSGDEYSCRV-THE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSS-TEEEEEEETTEEETTTEEEEEEEEETTSEE-EEEEEEEEE---TTTTGGEEEEE-EET
T ss_pred CCCCEEEEEEEEEEECC-CcEEEEEeccceeeeeeeecccccccccce-eeeEEEEec---CCCCCEEEEEE-EEC
Confidence 47899999999997765 5799999999887541111 1111 122233333 45566899999 554
No 351
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.65 E-value=0.00025 Score=43.97 Aligned_cols=61 Identities=28% Similarity=0.566 Sum_probs=43.7
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.|.|.+.+.+ ...+.|++++........ ...........|.+.++...|.|.|.|.+ .+.
T Consensus 1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~~~ 65 (74)
T cd00096 1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA-SNS 65 (74)
T ss_pred CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEE-ecC
Confidence 46899998844 689999998876544110 01111256678999999999999999999 554
No 352
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.64 E-value=0.00043 Score=46.13 Aligned_cols=77 Identities=8% Similarity=0.109 Sum_probs=43.0
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeec-cc-cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceee
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TE-ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQA 199 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 199 (323)
.....+.|.+.+..| .++|+|+++.... .. ..............|.+.....+|...|+|++ .+.........++
T Consensus 15 ~~~~va~C~s~~gkP--~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v-~h~~l~~~~~~~~ 91 (95)
T cd05719 15 EPVTVATCVSANGKP--PATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVV-SHPTLQEPQRFSV 91 (95)
T ss_pred CccEEEEEECCCCcC--CCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEE-eCcccCCCeEEEE
Confidence 445677999976555 7899999972111 11 00001111123445666555556666999999 7774444444444
Q ss_pred ee
Q psy15235 200 DF 201 (323)
Q Consensus 200 ~l 201 (323)
.|
T Consensus 92 ~L 93 (95)
T cd05719 92 TL 93 (95)
T ss_pred Ee
Confidence 43
No 353
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.63 E-value=0.00027 Score=42.75 Aligned_cols=62 Identities=29% Similarity=0.426 Sum_probs=42.5
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceee
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQA 199 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 199 (323)
+..++|.|+|.+ . .+|.|++ |..+.. ..+.++.+.....+-.|.|.|.+ ++. ....
T Consensus 4 e~~~~V~L~C~~--~-----tsi~W~k-G~~~~~---------~~~~tlnLGs~~~DPRG~Y~C~~-s~~------~~~~ 59 (69)
T cd07691 4 ESEGKVFLKCNG--A-----TNITWKK-GKEILE---------VSNTLLDLGSRINDPRGTYSCKE-SEP------NKEK 59 (69)
T ss_pred ecCceEEEEecC--C-----CcEEEec-Cccccc---------ccccEEeccCcccCCCcceEecC-ccC------CCcE
Confidence 446789999955 2 3699999 555544 23567778888888899999999 552 2344
Q ss_pred eeEEEe
Q psy15235 200 DFDVIM 205 (323)
Q Consensus 200 ~l~v~~ 205 (323)
.|+|.+
T Consensus 60 ~LQVyY 65 (69)
T cd07691 60 TLQVYY 65 (69)
T ss_pred EEEEEE
Confidence 555554
No 354
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.62 E-value=0.00027 Score=47.25 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=25.1
Q ss_pred EecCCcEEEEEEeecC-CCCCCceEEEEECCee
Q psy15235 119 FEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKS 150 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~ 150 (323)
+..++.++|.|.+.+. .|. ...++|.|+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~-~i~v~W~r~~~~ 42 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPE-GVNVTWTRGSGE 42 (96)
T ss_pred hccCCCeEEEEEEeCCCCCC-CcEEEEEECCeE
Confidence 4558999999999998 554 579999998743
No 355
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.61 E-value=0.00055 Score=47.80 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=43.2
Q ss_pred EeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e-c---c---C--cceEEEeeee--CCeEEEEEee
Q psy15235 27 YFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S-S---V---D--SGFAATANLT--EDNFKYSIHE 86 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~-~---~---~--~~~~~~~~~~--~~~~~l~i~~ 86 (323)
++....+.+|++|+|.|.... ...+.|||. |+.... . . . . ....+..... ...+.|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 456678999999999998432 356999993 322211 0 0 0 0 0011222222 3445677776
Q ss_pred cc--cCcceEEEeec
Q psy15235 87 AI--LESGYVQSSLF 99 (323)
Q Consensus 87 ~~--~~G~Y~C~~~~ 99 (323)
+. |+|.|.|....
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 65 49999999864
No 356
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.60 E-value=0.00042 Score=46.21 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=41.5
Q ss_pred eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.++.++|.|.+.|+ |.. .++|.+||.. .............++ ....+.|++..-.......|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999886 544 6999999987 321111101100111 1234556666544333557999999976
No 357
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.60 E-value=0.0002 Score=46.26 Aligned_cols=61 Identities=26% Similarity=0.539 Sum_probs=39.2
Q ss_pred cEEEEEEeecCCCCCCceEEEEECCe--e---ccc---------cccccCcEE------eceeEEEEeeeecCCCeeEEE
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKGNK--S---ITE---------ATELSGRLT------QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~~~--~---~~~---------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C 183 (323)
+++|.|........ ...+.|++... . +.. .....+|+. .....|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 47899988765521 24899988431 1 110 002234554 234679999999999999999
Q ss_pred EE
Q psy15235 184 RL 185 (323)
Q Consensus 184 ~~ 185 (323)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 64
No 358
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.58 E-value=0.00026 Score=47.94 Aligned_cols=67 Identities=13% Similarity=0.307 Sum_probs=41.1
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc------c----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE------L----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~------~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+..++|.|.+.++.|. ...++|++||.++..... . ++.| .....|.+..-...+...|+|.+ .+.
T Consensus 14 ~~~~~~tL~C~a~gFyP~-~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy-~~~s~L~v~~~~w~~~~~ytC~V-~H~ 90 (102)
T cd05768 14 SLQETATLTCLVKGFSPS-DIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESY-FLYSKLTVSAEDWNAGDVFTCVV-GHE 90 (102)
T ss_pred CcCCceEEEEEEeeEeCC-CCEEEEEECCEECCcccccccCcccccCCCCeE-EEEEEEEEcHHHhcCCCcEEEEe-EeC
Confidence 347889999999998765 578999999988753100 0 0111 11223444222223455899999 555
No 359
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.56 E-value=0.001 Score=44.14 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=48.1
Q ss_pred eEEecCCcEEE-EEEeecCCCCCCceEEEEECCeeccc---cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 117 KVFEYRVPFTL-KCNVTSPPPGDDYQIVWYKGNKSITE---ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 117 ~~~~~g~~v~l-~C~~~~~~~~~~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
..+.+|+.+.+ .|.+.+..| ..+|+|+.+...... ....++.+ .-...+.+.....+|...++|.+ .+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkP--aa~IsW~~~~~G~~~~~~~~~~ngT~-TV~S~~~l~p~r~d~G~~vtC~V-~H~al~ 86 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRP--AADVTWETNVYGTSESHSQEHPNGTT-TVTSEYIWVPSRHANGHPLTCVV-SHPALQ 86 (97)
T ss_pred eEeecCcceeEEEEEccCCcc--CCEeEEeCCCCCccceeeecCCCCCE-EEEEEEEEEeCHHHCCcEEEEEE-eCcccC
Confidence 44667888888 998877666 689999986332221 00011222 33445666555566667999999 666433
Q ss_pred CCCceeeee
Q psy15235 193 TTPLAQADF 201 (323)
Q Consensus 193 ~~~~~~~~l 201 (323)
......+.|
T Consensus 87 ~~~~~~~~L 95 (97)
T cd07704 87 QDFRITHIL 95 (97)
T ss_pred CCceeeEEe
Confidence 333333333
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.56 E-value=0.00034 Score=46.61 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=28.2
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcCcccee
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNGRNINQ 62 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g~~~~~ 62 (323)
.+..+++..+..++.++|.|.+.+ ...++|.+||..+..
T Consensus 4 ~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 4 TIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred eEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 444555555666788999999543 358999999987654
No 361
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.52 E-value=0.00047 Score=41.76 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=36.7
Q ss_pred CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
..+|.|+|.+ ...|.|++ |..+... ...+|.+..+..+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc--------------cccEEeccCcccCCCcceEecCcc
Confidence 4579999966 24599999 5544321 246788888888899999999887
No 362
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.50 E-value=0.00044 Score=47.74 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=41.3
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc--------CcEEeceeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--------GRLTQSKDSITIRKTTVDD-AGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~ 189 (323)
.++.++|.|.+.++.|. ...++|++||..+....... +.| .....|.+......+ ...|+|.+ .+.
T Consensus 17 ~~~~~tL~Cla~gFyP~-~I~V~W~kng~~l~~g~~~~~~~~~~~~gTY-s~~S~L~v~~~~w~~~~~~ytC~V-~H~ 91 (115)
T cd05769 17 NKRKATLVCLATGFYPD-HVSLSWKVNGKEVTDGVATDPQALRENTSTY-SISSRLRVSATEWFNPRNTFTCIV-QFY 91 (115)
T ss_pred cCCCcEEEEEEEeEeCC-CcEEEEEECCEECCCCcccccceecCCCCeE-EEEEEEEEChHHhccCCCeEEEEE-EEe
Confidence 46779999999998765 47999999998775411100 111 223344444333223 45899999 555
No 363
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.50 E-value=0.001 Score=44.22 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=41.3
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCeecccc---ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA---TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
..+.+.|.+.+..| ..+|+|+++....... ...++.+ .....|.+.....+|...|+|++ .+.........+
T Consensus 16 ~~~va~C~s~~gkP--aa~IsW~~~~~g~~~~~~~~~~~gt~-tv~S~l~~~P~~~d~Gk~ltC~v-~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSANGRP--PARISWSSTLGGNANTTSKENGDGTV-TVTSEYSLVPTPEANGKEVTCKV-EHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCCCCC--CcEEEEEcCCCCCeeEEEEeCCCCCE-EEEEEEEEecCHHHCCCEEEEEE-eCcccCCCeEEE
Confidence 44678998887666 7899999973211110 0001111 22345666555556666999999 776433333333
No 364
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.0031 Score=52.62 Aligned_cols=124 Identities=18% Similarity=0.278 Sum_probs=81.1
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEEE
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEWR 240 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~ 240 (323)
....|.|..++...+|.|+-.. .+..+.......+++....+|.+.+.. ..+.+|+.+.-.|.+..+ |+- .+.|+
T Consensus 180 p~~~L~I~slt~aTeGvY~Wr~-~~~~~~~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 180 PTQRLVIQELTLATQGMYYWAR-GPADRPHRYGTWTRVRMFRRPSLSIRP-HAVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred CcceEEEEEcccccceEEEEEE-ecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeeeecCCCceEEEEE
Confidence 4567999999999999999887 555444445556666666678776442 456789999999999655 443 59999
Q ss_pred ECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCC-eEEEEEEeecc
Q psy15235 241 IGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADR-GNYYCHGNNVA 289 (323)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~y~C~a~n~~ 289 (323)
.|+..+.... .+.......++-...++|++........ =+.+|.+.-..
T Consensus 258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r 308 (466)
T PHA03270 258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR 308 (466)
T ss_pred eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence 9999874311 1111221122224556676665443322 27899987654
No 365
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.46 E-value=0.0024 Score=54.02 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=79.9
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEW 239 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W 239 (323)
.....|.|.+++..++|.|.-++.....+.......+.+.+..+|.+.+. ...+.+|+.+.-.|.+..+ |+- .+.|
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~-p~PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI-GDPVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc-CCccccCCCceEEEEeeeecCCCceEEEE
Confidence 34567999999999999998776223323334556666776678876643 2457789999999999655 433 5999
Q ss_pred EECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCC--CeEEEEEEeecc
Q psy15235 240 RIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMAD--RGNYYCHGNNVA 289 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d--~G~y~C~a~n~~ 289 (323)
+.|+..+....-+.......++ ....++|++......| -=+.+|.+.--.
T Consensus 365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R 417 (566)
T PHA03269 365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR 417 (566)
T ss_pred EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence 9998887632211111211222 1345667764433333 346799987654
No 366
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.45 E-value=0.00038 Score=41.84 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=32.6
Q ss_pred ecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeec
Q psy15235 34 MEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLF 99 (323)
Q Consensus 34 ~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~ 99 (323)
..|.+|+|+|...... +.|.++++.+... ...+.+.-.. ...|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~~-i~W~~n~~~~~g~-------------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGDD-IKWKKNDQVSQGS-------------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCCC-ceEEeCCccCCCC-------------CceEEeeccC-CCCceEEEEeCC
Confidence 4799999999854333 9999998655543 1111111111 349999999853
No 367
>PHA02982 hypothetical protein; Provisional
Probab=97.44 E-value=0.0083 Score=44.96 Aligned_cols=119 Identities=8% Similarity=0.073 Sum_probs=68.7
Q ss_pred eceEEecCCcEEEEEEecc---CceEEEEEcCc-cceeec-------------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 29 GDTEIMEGAPINISCILTI---FEQVKWQLNGR-NINQSS-------------VDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~---~~~v~W~~~g~-~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
-++....|++|.|.|.... -...+|..+.. .+.... -+....+..+.+....+|+|.++..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3466778999999999332 24688998542 233110 0112334555666677788877766
Q ss_pred CcceEEEeeccCCccce-eeeeee-CCceeE-EecCCc-EEEEEEeecCCCCCCceEEEEECCee
Q psy15235 90 ESGYVQSSLFIPRMNAI-TGNYDI-EPKYKV-FEYRVP-FTLKCNVTSPPPGDDYQIVWYKGNKS 150 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~~~-~~~~~~-~~~~~~-~~~g~~-v~l~C~~~~~~~~~~~~i~W~~~~~~ 150 (323)
.|-|+|.+....+.... .--+.+ ..++.. ..+++. -.+.|-+-+.. ..-..|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e~nNeT~V~CyVgS~~---~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVEEHNNETIITCFVGSKH---GDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEEEEecCCeEEEEEEEEecc---CCCccEEEeeEE
Confidence 88999999865433321 222333 222222 233444 45689886654 222389877764
No 368
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.00057 Score=45.60 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=42.4
Q ss_pred EeeCCeEEEEEEEecC--CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 217 VIEGEKLRLECLVVGS--PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~--p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
...+..++|.|.+.|. |. ..++|.++|.. . ..........++ ...+.|++..-..+....|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~---~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E---AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C---cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3357889999999874 43 36999999875 1 111111001111 2346676664444444569999999874
No 369
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.36 E-value=0.0057 Score=51.61 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=78.7
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEEEEC
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEWRIG 242 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~ 242 (323)
..|.|..++...+|.|+-.. .+..+.......+.+....+|.+.+. ...+.+|+.+.-.|.+..+ |+- .+.|+.|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~-~~~n~t~~~~~~VtV~~yr~Psvsv~-~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSL-YAKNGTLVNSTSVTVSTYNAPLVDLS-VHPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEE-ecCCCceeeeeEEEEEEecCCccccc-CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 55999999999999998766 45433333445555555667877644 2457789999999999655 433 5999999
Q ss_pred Ceeeec-cCCeeeeecCCCCC-CcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235 243 NDTYFR-SQGRIKLSEHPEKG-TANSVLQIDEATMAD-RGNYYCHGNNVA 289 (323)
Q Consensus 243 ~~~~~~-~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d-~G~y~C~a~n~~ 289 (323)
+..+.. ..-+.......++. ...++|++......+ -=+.+|.+.--.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 998762 21111111112222 346777777654433 347899987654
No 370
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.33 E-value=0.0012 Score=43.56 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=43.9
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEeeeecCCCe-eEEEEEE
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIRKTTVDDAG-QYSCRLI 186 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G-~y~C~~~ 186 (323)
...|..+++.|.+.+..|.+...+.|+++...+... .+.+.. ......+++... ++|.| .|+|+|.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~-~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK-SFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceeccc-ccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEE
Confidence 357999999999998777556899999876665441 111111 123345566554 56666 9999994
No 371
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.28 E-value=0.0016 Score=43.43 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=39.2
Q ss_pred cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++.++|.|.+.++.|. ...++|++||.. ...... ++.| .....|++..-.-.....|+|.+ .+.
T Consensus 15 ~~~~~~L~C~a~gFyP~-~i~vtW~k~g~~-~~~~~~~~~~~~~dgty-~~~s~L~v~~~~w~~~~~ytC~V-~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPE-PVTFTWNSGSNS-TSGVKTYPAVLQSGGLY-TASSQLTVPASEWKGKESFYCKV-EHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECC-CcEEEEeECCEE-CCCcEECCCEeCCCCCE-EEEEEEEEeHHHcCCCCcEEEEE-EeC
Confidence 36679999999998766 579999999987 331111 1112 11223333332111245799999 555
No 372
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.26 E-value=0.013 Score=48.71 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=75.7
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe-cceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVE 238 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~ 238 (323)
..+..+.|.++...++|.|+... .+.....-......+.+.. +|.+.+. ...+..|+...-.|.+..+ |+- .+.
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~-~d~~N~~i~e~~~~~~v~~RPPsVsV~-a~PVL~Ge~YkAtC~vAnYYPP~Svrlr 281 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIM-RDPFNRPLLDKHIYIRVCQRPASVDVL-APPVLSGENYKASCIVRHFYPPGSVYVS 281 (490)
T ss_pred cceeeEEEEEeecccceEEEEEe-cCCCCCccccceEEEEEEecCCCcccc-CCccccCCCceEEEEeeeecCCCceEEE
Confidence 45678999999999999775544 4433333344455555555 4445533 2456789999999999665 433 599
Q ss_pred EEECCeeeeccCCeeeee---cCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 239 WRIGNDTYFRSQGRIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|++||..+.....+-... .........++|++.+...+.-=+.+|.+.-..+
T Consensus 282 Wf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 282 WRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred EEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 999998775332211111 1111112345666655433333479999886553
No 373
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.22 E-value=0.0025 Score=43.49 Aligned_cols=73 Identities=11% Similarity=0.214 Sum_probs=48.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-eccc----------cccccCcEE------eceeEEEEeeeec
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-SITE----------ATELSGRLT------QSKDSITIRKTTV 175 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-~~~~----------~~~~~~~~~------~~~~~l~i~~~~~ 175 (323)
++...++..|..++|.|.+.+..-..+..+.|+|... .+.. ......++. .....|.+.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 3445567788999999999774322136899998321 2110 011233332 4567899999999
Q ss_pred CCCeeEEEEE
Q psy15235 176 DDAGQYSCRL 185 (323)
Q Consensus 176 ~d~G~y~C~~ 185 (323)
+|++.|.|..
T Consensus 84 ~DTa~Y~Ca~ 93 (115)
T cd05721 84 NQTDIYFCKI 93 (115)
T ss_pred HHCeEEEEEe
Confidence 9999999977
No 374
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.20 E-value=0.0034 Score=42.84 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=47.8
Q ss_pred eeEEeeCCeEEEEEEEecCC--C-CcEEEEECCe-eee-------------ccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235 214 TLTVIEGEKLRLECLVVGSP--P-PTVEWRIGND-TYF-------------RSQGRIKLSEHPEKGTANSVLQIDEATMA 276 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p--~-~~~~W~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 276 (323)
...+..|..++|+|.+.|.- . -.+.|.|.-. .+. ....++..+. +.....-.|+|.+++.+
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~--~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG--TLGNEQVNFTLQNLRAN 84 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE--eCCCCEEEEEEcCCCHH
Confidence 45577889999999997753 2 4689987321 211 1223333331 12224678999999999
Q ss_pred CCeEEEEEEeec
Q psy15235 277 DRGNYYCHGNNV 288 (323)
Q Consensus 277 d~G~y~C~a~n~ 288 (323)
|.+.|.|....-
T Consensus 85 DTa~Y~Ca~e~m 96 (115)
T cd05721 85 QTDIYFCKIELM 96 (115)
T ss_pred HCeEEEEEeeec
Confidence 999999976543
No 375
>PHA02633 hypothetical protein; Provisional
Probab=97.20 E-value=0.0009 Score=39.45 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=35.0
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
....|.|-++..+|+|.|.|..+|.. .....++.|.|..+..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t----~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNET----YSDMMKFDLCICLRIE 57 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCC----eeEEEEEEEEEeeccc
Confidence 46779999999999999999999887 4477888888876654
No 376
>KOG1480|consensus
Probab=97.14 E-value=0.00063 Score=60.62 Aligned_cols=154 Identities=17% Similarity=0.306 Sum_probs=92.0
Q ss_pred EEeeceEEecCCcEEEEEEeccCceEEEEEcCccceee------c--cCcceEEEeeeeCCeEEEEEeeccc---CcceE
Q psy15235 26 TYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQS------S--VDSGFAATANLTEDNFKYSIHEAIL---ESGYV 94 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~---~G~Y~ 94 (323)
..+.+..+..|.++.|.|.+++.+++...-++.-+... . ...+... ......+....+.+ -..|.
T Consensus 29 ~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~----~~~si~Isr~~v~~~~~~~d~~ 104 (909)
T KOG1480|consen 29 TEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV----REVSIDISRQQVETSGGPEDYW 104 (909)
T ss_pred ecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE----EeeeeeeehhhhhcccCcccee
Confidence 45677889999999999998887766544443333222 0 0011110 01111222223333 45677
Q ss_pred EEeec--cCCcc----------ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 95 QSSLF--IPRMN----------AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 95 C~~~~--~~~~~----------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
|+-.. ..+.. .+...+.-.+.-..+..+..+.+.|...-..| ...++|++++..+.+ ...+.
T Consensus 105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~p--aae~~w~k~e~~~~p----d~n~~ 178 (909)
T KOG1480|consen 105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDP--KAEVEWLKNEVVIDP----DANVI 178 (909)
T ss_pred eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccch--hhhhhccccCCCCCc----cccch
Confidence 76532 22211 01111222455555777888889987654443 679999999988766 33332
Q ss_pred -eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 163 -QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 163 -~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.....+.+..+...|.|+|+|++ .|..
T Consensus 179 ~~~d~~li~~~arlsd~~nytc~a-~ni~ 206 (909)
T KOG1480|consen 179 RASDHNLIISQARLSDSGNYTCEA-TNIV 206 (909)
T ss_pred hhhcCCccccchhhhhcccceeee-ehhh
Confidence 56678899999999999999999 6663
No 377
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.08 E-value=0.0022 Score=42.81 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=24.4
Q ss_pred cCCcEEEEEEeecCC-CCCCceEEEEECCee
Q psy15235 121 YRVPFTLKCNVTSPP-PGDDYQIVWYKGNKS 150 (323)
Q Consensus 121 ~g~~v~l~C~~~~~~-~~~~~~i~W~~~~~~ 150 (323)
.+..++|.|.+.++. |. ...|+|.++|..
T Consensus 18 ~~~~atLtClV~~f~~P~-~i~V~W~~~g~~ 47 (99)
T cd04986 18 LGSSASLTCTLSGLRDPE-GAVFTWTPSGGK 47 (99)
T ss_pred cCCccEEEEEEeccCCCC-CeEEEEEECCcc
Confidence 578899999999976 65 579999999865
No 378
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.05 E-value=0.0022 Score=44.79 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=41.5
Q ss_pred EecCCcEEEEEEecc-------CceEEEEEcCccceeeccCcc---------eEEEeeeeCCeEEEEEeeccc-CcceEE
Q psy15235 33 IMEGAPINISCILTI-------FEQVKWQLNGRNINQSSVDSG---------FAATANLTEDNFKYSIHEAIL-ESGYVQ 95 (323)
Q Consensus 33 v~~G~~v~L~C~~~~-------~~~v~W~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~l~i~~~~~-~G~Y~C 95 (323)
..=+++|.|+|.+.+ ...+.|.++|+.+....-... ..+ .....|+..|.+..... .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAVEGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH-EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhccccceEE
Confidence 345899999999654 346999998877655421111 112 22337777788887555 999999
Q ss_pred EeeccCCcc
Q psy15235 96 SSLFIPRMN 104 (323)
Q Consensus 96 ~~~~~~~~~ 104 (323)
.+....+..
T Consensus 103 eVt~~~~eg 111 (130)
T PF08204_consen 103 EVTELSREG 111 (130)
T ss_dssp EEEETTEEE
T ss_pred EEEecCCCc
Confidence 997665543
No 379
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.93 E-value=0.0077 Score=39.84 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred EEeeCCeEEEEEEEec-CCC--CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeeccc
Q psy15235 216 TVIEGEKLRLECLVVG-SPP--PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVAT 290 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g-~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g 290 (323)
.+..|..+++.|.+.+ .|. ..+.|++....+.+..-...... .........+++... .+|.| +|.|.|.=..+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~-ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDK-KSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceeccccccccccc-CCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 3478999999999954 565 47999987766643211100000 000113466777664 66666 89999986653
No 380
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.82 E-value=0.0022 Score=49.95 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 233 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
..|.+.|..++......+.+.+++ ..+.|.+.+..+.++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT-------~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT-------ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc-------cCceEEeeccccccCCceEEEEEEEe
Confidence 478999998776665566777877 47889999999999999999999765
No 381
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.75 E-value=0.0028 Score=44.24 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=44.7
Q ss_pred eCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCC---ee--------eeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 219 EGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQG---RI--------KLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
-.+++.|.|.+... +...++|.+++..+..-++ +. .+.+.. ...+.|.+...+.- .|+|+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~---kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELL---KGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGG---GTB--EEEEHHHHH--EEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhh---CCCEEEEEcchhcc-ccceE
Confidence 47899999999642 2235999999887642211 11 111000 13466888875554 89999
Q ss_pred EEEeecccCCCCCceeEEEEEE
Q psy15235 283 CHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|.+...... .+..+.|+.
T Consensus 102 CeVt~~~~e----ge~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSRE----GETTIELKY 119 (130)
T ss_dssp EEEEETTEE----EEEEEEEEE
T ss_pred EEEEecCCC----ceEEEEEEE
Confidence 999988733 666666665
No 382
>PHA02982 hypothetical protein; Provisional
Probab=96.63 E-value=0.052 Score=40.89 Aligned_cols=118 Identities=10% Similarity=0.210 Sum_probs=68.6
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCe-eccc----------ccc----ccCcEE----eceeEEEEeeeecCCCe
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-SITE----------ATE----LSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-~~~~----------~~~----~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
+..+++|.|+|..+.... ..+..|+++.. .+.. ... .+..+. ...++|+|.++..+..|
T Consensus 36 a~vd~~V~L~C~~~~~~~--i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADE--ISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred ccCCCcEEEEecCCCcch--hhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 556899999998655442 45788988543 2221 000 011111 66789999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEee-CCeEEEEEEEecCCCCcEEEEECCee
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIE-GEKLRLECLVVGSPPPTVEWRIGNDT 245 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~-g~~~~l~C~~~g~p~~~~~W~~~~~~ 245 (323)
-|+|++.+.. .........+.|+....+ ..+.+ ...-.+.|-+.....+...|..+|-.
T Consensus 114 CYtc~~ks~~--~k~E~c~kCl~V~~~~V~-----~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 114 CFTCEAKDAE--GKEETCEKCLEIQKEDIL-----YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred ceEEEEecCC--CchheeheeeeEecceEE-----EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999994333 222333444555321111 11122 33456888885443333489887764
No 383
>PHA03042 CD47-like protein; Provisional
Probab=96.36 E-value=0.028 Score=44.13 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=47.6
Q ss_pred eCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 219 EGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 219 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
-.+++.+.|.++.- ....++|..++..+...++. +.+.|.++.. ..-.|+|+|+|.+...+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~-~~l~GNYTCEv~~l~n~-- 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFS-KNLSGNYTCEAINKFNK-- 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEecc-ccCCCceeEEEeecccC--
Confidence 47889999999632 24469999999877533222 2456766643 34489999999987733
Q ss_pred CCceeEEEEEEc
Q psy15235 294 QPNEAFVYVRVK 305 (323)
Q Consensus 294 ~~~~~~~~l~v~ 305 (323)
....+.|+..
T Consensus 96 --gk~~IeLk~~ 105 (286)
T PHA03042 96 --IKNTIELQYV 105 (286)
T ss_pred --ccEEEEEEEE
Confidence 4455555544
No 384
>PHA02633 hypothetical protein; Provisional
Probab=96.20 E-value=0.014 Score=34.57 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=28.8
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK 206 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~ 206 (323)
....|.|-++..+|+|.|.|.. .|. ......++.++|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~-rn~--t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCIT-KNE--TYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEE-cCC--CeeEEEEEEEEEeec
Confidence 4567899999999999999999 666 333444555555543
No 385
>PHA03042 CD47-like protein; Provisional
Probab=95.74 E-value=0.073 Score=41.95 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.3
Q ss_pred EecCCcEEEEEEecc-------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCC
Q psy15235 33 IMEGAPINISCILTI-------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPR 102 (323)
Q Consensus 33 v~~G~~v~L~C~~~~-------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~ 102 (323)
-.=++++.++|..+. ...+.|.++++.+...+-. ...+|....... .|.|+|++.+..+
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSKNLSGNYTCEAINKFN 94 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccccCCCceeEEEeeccc
Confidence 345899999999543 3469999999887765111 113455555445 9999999976443
No 386
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.85 E-value=0.043 Score=43.07 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=34.9
Q ss_pred CceEEEEECC-eeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 139 DYQIVWYKGN-KSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 139 ~~~i~W~~~~-~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+.|..++ ..+.. ..++. ..++.|.+.+....++|.|+|..+
T Consensus 12 DP~y~W~GP~g~~l~g----n~~~nIT~TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSG----NSYVNITETGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CCceEEECCCCcccCC----CCeEEEccCceEEeeccccccCCceEEEEE
Confidence 5799999854 45544 44555 677889999999999999999994
No 387
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.73 E-value=0.11 Score=34.78 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=28.8
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.+.+|.|+.++..|+|.|.-++.+..|.. ....+.|.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V---~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKV---CTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCE---EEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcE---EEEEEEEEe
Confidence 47889999999999999999999999762 445555554
No 388
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.43 E-value=1.7 Score=33.39 Aligned_cols=101 Identities=15% Similarity=0.263 Sum_probs=50.6
Q ss_pred CceEEEEECCeeccccccccCcEE------eceeEEEEee-eecCCCeeEEEEEEcCCCCCCCC--ceeeeeEEEeccee
Q psy15235 139 DYQIVWYKGNKSITEATELSGRLT------QSKDSITIRK-TTVDDAGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTA 209 (323)
Q Consensus 139 ~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~ 209 (323)
...++|+.||.++........... .....|++.. ...+..-..+|.+.-........ .+...-.|..+|.+
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v 85 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV 85 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE
Confidence 578999999997764111111111 1223344422 12223346899986333211111 22333334456655
Q ss_pred eeeceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeee
Q psy15235 210 KLVETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTY 246 (323)
Q Consensus 210 ~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~ 246 (323)
++ .. ..-...|.+.--| ...+.|.-++...
T Consensus 86 sv----~F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 86 SV----RF---EDGYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EE----Ee---cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence 53 12 2234567774444 3689999887654
No 389
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.14 E-value=0.3 Score=32.73 Aligned_cols=46 Identities=13% Similarity=0.379 Sum_probs=29.8
Q ss_pred EEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 142 IVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 142 i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++|..+...... ..++.++. ..+..|.|..++..|+|.|.-++ ++.
T Consensus 46 ltW~n~~~~~~~-~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEv-T~~ 93 (108)
T PF11465_consen 46 LTWKNDSTPSYN-SSFNNRFNFTSENLALLIKAAQPQDSGLYCLEV-TNE 93 (108)
T ss_dssp EEEETTEEEESS-TTHHHHEEEETTTTEEEESS-SGGG-EEEEEEE-EET
T ss_pred EEEcCCCccccc-ccccceEeeeccCceEEEeecCcccCceEEEEE-EcC
Confidence 455444333322 23455655 67789999999999999999999 554
No 390
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.84 E-value=0.37 Score=31.57 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=44.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
.|+..++..|.++++.|.....-+ .....|.|..++..++. .++. .....+++.+.....+-.|.|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-----~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-----SQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-----GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-----hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 345566789999999999865422 11568999999887664 3333 44577888887766666788875
No 391
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.71 E-value=0.31 Score=40.25 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.3
Q ss_pred eEEEEEEEecC-CCC-cEEEEEC
Q psy15235 222 KLRLECLVVGS-PPP-TVEWRIG 242 (323)
Q Consensus 222 ~~~l~C~~~g~-p~~-~~~W~~~ 242 (323)
.++|.|.+.|. |.. .++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999886 543 6999999
No 392
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.62 E-value=0.65 Score=29.71 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=19.2
Q ss_pred ceeEEEeecCcCCCeEEEEEEe-ecc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGN-NVA 289 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~-n~~ 289 (323)
...+.......+|+|.+.|.|+ +..
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTT
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCce
Confidence 4556677788899999999994 443
No 393
>KOG4597|consensus
Probab=93.31 E-value=0.13 Score=43.88 Aligned_cols=85 Identities=19% Similarity=0.051 Sum_probs=58.5
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEE---CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.-.+..+++..++|-+.|.|.+.|.|.+ |...+... +.-... .--......|.|-+....|.|-|+|.+.|..|
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e--~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVE--NPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccC--CcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 3446679999999999999999999975 33322211 111100 00112467899999999999999999999996
Q ss_pred CCCCCceeEEEEEEc
Q psy15235 291 RNSQPNEAFVYVRVK 305 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~ 305 (323)
- ..+.+.+.+.
T Consensus 282 ~----~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 F----LRRDVPCSSV 292 (560)
T ss_pred e----eeccceeeee
Confidence 5 5666655543
No 394
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.86 E-value=0.81 Score=29.97 Aligned_cols=68 Identities=9% Similarity=0.252 Sum_probs=40.3
Q ss_pred eeceeEEeeCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 285 (323)
.++...+..|++++..|..... ....+.|..|+..+.. .++.... + ..+.+++.+......-.|.|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~--~qy~~in--~---~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG--SQYRVIN--D---TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC--GCEEEES--T---TEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh--hHcceeC--C---eEEEEEEccCCCCCceEEEEEE
Confidence 3445677899999999999422 3447999998885543 2332221 0 2477777776655444566653
No 395
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.79 E-value=0.74 Score=30.18 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=42.4
Q ss_pred eEEEEEEE-ecCCCCcEEEEEC--CeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235 222 KLRLECLV-VGSPPPTVEWRIG--NDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297 (323)
Q Consensus 222 ~~~l~C~~-~g~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~ 297 (323)
.+.-.|.+ .|.|++.|+|.-+ |.. ..+......+. ...+.+.+-.....|.-+.+|.+.+.. .+-.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~----~~~~ 91 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN----DRFT 91 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc----cccc
Confidence 35567886 8889999999742 211 11111111111 134666666777777889999999975 2244
Q ss_pred eEEEEE
Q psy15235 298 AFVYVR 303 (323)
Q Consensus 298 ~~~~l~ 303 (323)
..+.|.
T Consensus 92 ~~~~L~ 97 (98)
T cd05890 92 DSVTLN 97 (98)
T ss_pred ccEEec
Confidence 455543
No 396
>KOG0613|consensus
Probab=92.64 E-value=0.25 Score=47.56 Aligned_cols=163 Identities=11% Similarity=0.048 Sum_probs=92.6
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 196 (323)
...+..+++.|...+... .-.+.|+++.............+. .....+.+..+...+.+.|.|.+ .|..+.....
T Consensus 346 a~d~~~v~m~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a-~n~~g~~~~~ 422 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQK--PDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPA-VNKGGTEQTI 422 (1205)
T ss_pred cccCcceeecccccCCcC--CchheeecccccccccccccccccccccCcchhhhhcCcccccccccce-eccCCccccc
Confidence 445677899999988773 235999987665544110011111 44567788888899999999999 6775443332
Q ss_pred eeeeeEEEe----cceeeeeceeEEeeC--CeEEEEEEEecCCCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235 197 AQADFDVIM----KPTAKLVETLTVIEG--EKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 197 ~~~~l~v~~----~p~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 268 (323)
....+.... ++.+..........+ +.+.+.|...+++-+ .++|++++............. .-.+|
T Consensus 423 ~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~-------~~tsl 495 (1205)
T KOG0613|consen 423 AESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRD-------VLTSL 495 (1205)
T ss_pred chhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccccccccc-------chhhh
Confidence 222222211 222222223333334 778889988777644 466666554433211111111 24567
Q ss_pred EEeecCcCCCeEEEEEEeecccC
Q psy15235 269 QIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.+.-....|.+.|.-......|.
T Consensus 496 Llk~~~~~~~A~~~~a~~~~~~k 518 (1205)
T KOG0613|consen 496 LLKVASLSDGAQYTRALRTLQGK 518 (1205)
T ss_pred eeeccCCCccchhhhhhhccCCC
Confidence 77777778888885444444433
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.52 E-value=0.61 Score=38.62 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.2
Q ss_pred cEEEEEEeecCCCCCCceEEEEEC
Q psy15235 124 PFTLKCNVTSPPPGDDYQIVWYKG 147 (323)
Q Consensus 124 ~v~l~C~~~~~~~~~~~~i~W~~~ 147 (323)
.++|+|.+.|+.|. ...+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~-~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPS-SVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCC-ccEEEEEec
Confidence 57999999998776 579999999
No 398
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=92.52 E-value=3.9 Score=31.53 Aligned_cols=98 Identities=10% Similarity=0.140 Sum_probs=51.2
Q ss_pred ceEEEEEcCccceeeccCcceEEEeeeeC---CeEEEEEe-eccc--CcceEEEeeccCC-c------cceeeeeeeCCc
Q psy15235 49 EQVKWQLNGRNINQSSVDSGFAATANLTE---DNFKYSIH-EAIL--ESGYVQSSLFIPR-M------NAITGNYDIEPK 115 (323)
Q Consensus 49 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~l~i~-~~~~--~G~Y~C~~~~~~~-~------~~~~~~~~~~~~ 115 (323)
..++|+.||..+.......... ...++ ....|.+. ...+ .=..+|++.=... . ....|.+-.+|.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~--~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~ 84 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQ--VWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPR 84 (211)
T ss_pred EEEEEEECCEeCCccceeeEEE--EecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCE
Confidence 4799999998777542222221 11211 12233331 1122 5667998752211 1 123344444677
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
+.+..++. ...|.+.--|.. ...+.|.-++...
T Consensus 85 vsv~F~~g--~AVC~A~CVP~~-~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVRFEDG--YAVCTARCVPRG-NVTLRWSVGDDPS 117 (211)
T ss_pred EEEEecCC--EEEEEcceeeCC-CeEEEEEECCccC
Confidence 66644433 455777655432 3689999877653
No 399
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.25 E-value=6.4 Score=33.36 Aligned_cols=122 Identities=12% Similarity=0.203 Sum_probs=66.1
Q ss_pred ceEEecCCcEEEEEEec-----cCceEEEEEcCccceee------------c--cCcceEEE------eeeeCCeEEEEE
Q psy15235 30 DTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS------------S--VDSGFAAT------ANLTEDNFKYSI 84 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~------------~--~~~~~~~~------~~~~~~~~~l~i 84 (323)
...+..|..|.|.|... .-....|+..|-++.+- . .++...+. .+...+.+++..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 45677799999999932 23578999866444321 0 11111111 112234444444
Q ss_pred eecccCcceEEEeeccCCccceeeeeeeCCceeE--EecCCcE-EEEEEeecCCCCCCceEEEEECCeecc
Q psy15235 85 HEAILESGYVQSSLFIPRMNAITGNYDIEPKYKV--FEYRVPF-TLKCNVTSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 85 ~~~~~~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~v-~l~C~~~~~~~~~~~~i~W~~~~~~~~ 152 (323)
..+...|-|.|++........-..-+.+..++.. ..+|+.. ...|-+-+.... ++++.|..+|....
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~~n~T~V~Cyv~sy~~k-p~si~wkvnGV~~~ 422 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEGDNETKVACYAAQYDMQ-PFSILWKSNGVSFG 422 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEeccCceEEEEEEEEecccC-CceeEEEEccEEec
Confidence 4444599999999765433322222223223333 2234444 457887665211 56899998886654
No 400
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.24 E-value=11 Score=32.14 Aligned_cols=159 Identities=15% Similarity=0.205 Sum_probs=89.1
Q ss_pred EecCCcEEEEEEeec--CCCCCCceEEEEECCeeccc------------cc-cccCcEE----------eceeEEEEeee
Q psy15235 119 FEYRVPFTLKCNVTS--PPPGDDYQIVWYKGNKSITE------------AT-ELSGRLT----------QSKDSITIRKT 173 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~--~~~~~~~~i~W~~~~~~~~~------------~~-~~~~~~~----------~~~~~l~i~~~ 173 (323)
++.|..|.|.|...- +.. ...+.|+--|-++.+ .. ..++.+. ....+|+|.++
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~--i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNEN--ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eccCcEEEEEEEEeecCCcc--cccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 556999999998754 222 568899876654432 00 0011111 34578999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeC-CeEEEEEEEecC--CCCcEEEEECCeeeeccC
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEG-EKLRLECLVVGS--PPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g-~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~ 250 (323)
..+.+|-|.|++. .. .........|.|....... -..+| ..-.+.|-+... .++.+.|..+|-.....
T Consensus 354 ~I~N~GCY~~~a~-~g--~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~- 424 (500)
T PHA02914 354 HINNAGCYEAQAF-MG--KFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE- 424 (500)
T ss_pred EEEcCCceEEEEe-cC--cchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccCCceeEEEEccEEecCe-
Confidence 9999999999994 33 2223333334443222111 01122 344578888443 45579999988765421
Q ss_pred Ceeeeec-C---CCCCCcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235 251 GRIKLSE-H---PEKGTANSVLQIDEATMAD-RGNYYCHGNNVA 289 (323)
Q Consensus 251 ~~~~~~~-~---~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~ 289 (323)
.+.-.. . --.+.....+.|.+-...| --.-.|...-..
T Consensus 425 -~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~ 467 (500)
T PHA02914 425 -IADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQ 467 (500)
T ss_pred -ecCcccccccccccccceEEEEEecccCccccccceEEEecCC
Confidence 110000 0 0012235667777766666 345678877655
No 401
>KOG0613|consensus
Probab=90.08 E-value=0.69 Score=44.79 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=54.8
Q ss_pred eeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+..+..+++.|...+.+.+. +.|++++.....+.+- ... +.+......+.|..+...+.+.|.|.|.|..|.
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~ 418 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA-LPC--PVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGT 418 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccc-ccc--ccccccCcchhhhhcCcccccccccceeccCCc
Confidence 44566688899999999998775 9999977654432211 111 222234677889999999999999999999986
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=89.81 E-value=1.1 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.5
Q ss_pred eeceEEecCCcEEEEEEec-----cCceEEEEEcCccceee
Q psy15235 28 FGDTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS 63 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~ 63 (323)
|..+.+..|..++|.|.+. ..+.+.|.-|+..+...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 4567788999999999932 24689999988777443
No 403
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=87.19 E-value=2.3 Score=25.52 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=38.0
Q ss_pred EEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 126 ~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
+|+|.....- -+.||-+|..+.. ....++++..+ .++|+|+- ... ...++-++-..
T Consensus 2 tltC~s~~sL-----PiswYcN~TRLlR---------lt~~Tlt~~~l----tcNFtCV~-qSG-----h~hSiWItW~~ 57 (71)
T PF11049_consen 2 TLTCPSNASL-----PISWYCNGTRLLR---------LTQQTLTVVTL----TCNFTCVG-QSG-----HRHSIWITWYA 57 (71)
T ss_pred ceecCCCCCC-----cccEEECCceeee---------ecCCeEeeeee----eEEeeecC-CCC-----CCceEEEEEcC
Confidence 5778665544 5799999876654 34456666554 57899976 222 34556666655
Q ss_pred cceee
Q psy15235 206 KPTAK 210 (323)
Q Consensus 206 ~p~~~ 210 (323)
.|+++
T Consensus 58 qPVLQ 62 (71)
T PF11049_consen 58 QPVLQ 62 (71)
T ss_pred chhhh
Confidence 66554
No 404
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.24 E-value=57 Score=35.79 Aligned_cols=197 Identities=9% Similarity=0.057 Sum_probs=99.1
Q ss_pred ceEEecCCcEEEEEEecc--CceEEEEEcCcc-ceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCcc
Q psy15235 30 DTEIMEGAPINISCILTI--FEQVKWQLNGRN-INQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMN 104 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~~--~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~ 104 (323)
...+..|+.++|.+...+ ...+.|..++.. .... ........-...+.+.+.+..-.. .+.|.+.+.-
T Consensus 1876 ~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t--~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~V----- 1948 (2740)
T TIGR00864 1876 KKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ--PGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEV----- 1948 (2740)
T ss_pred cccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec--CCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEE-----
Confidence 345678999999998443 467888885432 2211 011111111113333333322222 3333333310
Q ss_pred ceee--eeeeCCc-eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235 105 AITG--NYDIEPK-YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 105 ~~~~--~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 181 (323)
+.+ .+.+... ...+..|+..++.-.+.... ...+.|+.+-..+.. +..+......++.. ....|.|
T Consensus 1949 -le~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~---~V~f~W~f~~~~~~g----~~~~~~~G~~vty~---~~~~G~~ 2017 (2740)
T TIGR00864 1949 -LEAVRGLQIPDCCAAGIATGEEKNFTANVQRGK---PVAFAWTFDLHHLHG----DSLVIHMGKDVSYT---AEAAGLL 2017 (2740)
T ss_pred -EEeccceEecCCcccceecCceEEEEEEEecCC---ceEEEEEeeecccCC----CcceeecCCceEEc---cCCCcEE
Confidence 111 1111111 11256788999998887766 578999865333322 11111111222222 2467888
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceee-ee-ceeEEeeCCeEEEEEEEecCC-CCcEEEEECCee
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LV-ETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDT 245 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~-~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~ 245 (323)
...+ ...+.......+..+.|+.+.... +. .......+..+.|.|.....+ ...+.|-+++..
T Consensus 2018 ~I~v-~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt 2083 (2740)
T TIGR00864 2018 EIQL-GAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGS 2083 (2740)
T ss_pred EEEE-EEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCC
Confidence 8766 333223334556666666644222 11 123355688999999996544 357999886544
No 405
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=85.82 E-value=7.1 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=25.6
Q ss_pred CceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 139 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+.+.|+..+..... .............|+|.+.|.|+
T Consensus 26 ~~~~~l~~~~~k~~~----------~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE----------TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEE----------ESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccccc----------cceEEEEecCCCCCCEEEEEEEc
Confidence 457777776655543 23345555666789999999994
No 406
>PHA03052 Hypothetical protein; Provisional
Probab=84.30 E-value=7.2 Score=23.75 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=29.9
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE 153 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~ 153 (323)
....+..|..++|.|.+.-.++.....+.|..++..+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 445677899999999997666554668889888877744
No 407
>PHA03189 UL14 tegument protein; Provisional
Probab=83.83 E-value=11 Score=30.70 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.0
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+..+|++. +..+-+|.|.|+..|..
T Consensus 132 q~ltLtF~-v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 132 QRLTLTFR-VSTSTAGMYECVLRNET 156 (348)
T ss_pred eEEEEEEE-EEecccceEEEEecccc
Confidence 34555554 55567899999999975
No 408
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=83.79 E-value=74 Score=35.03 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=67.7
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
+..|.++.+.-.+.... ...+.|..++..-.. ..... .+..++|.|+..+ ...+.......+
T Consensus 1797 ~~ag~~v~F~a~vstGs---nVsw~W~f~~g~s~~---------gk~v~-----~Tf~~aG~ytV~L-~AsN~vs~~~~s 1858 (2740)
T TIGR00864 1797 FAADSSVCFQGELATGT---NVSWCWAIDGGSSKM---------GKHAC-----MTFPDAGTFAIRL-NASNAVSGKSAS 1858 (2740)
T ss_pred eecCcEEEEEEEccCCC---eeEEEEEeCCCCccc---------cceeE-----EecCCCeEEEEEE-EEEcccCcceee
Confidence 34466677766654444 467888776543221 11111 3346789998777 333335566778
Q ss_pred eeeEEEecc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235 199 ADFDVIMKP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244 (323)
Q Consensus 199 ~~l~v~~~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~ 244 (323)
..+.|+.+. .+. ......+..|+.++|.+.+...+...+.|...+.
T Consensus 1859 ~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdg 1906 (2740)
T TIGR00864 1859 REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGA 1906 (2740)
T ss_pred eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCC
Confidence 888888765 222 2223456789999999999666678899988654
No 409
>PHA03189 UL14 tegument protein; Provisional
Probab=83.73 E-value=6.4 Score=31.97 Aligned_cols=29 Identities=3% Similarity=-0.152 Sum_probs=20.8
Q ss_pred CCeEEEEEeeccc-CcceEEEeeccCCccc
Q psy15235 77 EDNFKYSIHEAIL-ESGYVQSSLFIPRMNA 105 (323)
Q Consensus 77 ~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~ 105 (323)
...++|++.-.+. +|.|.|...|......
T Consensus 131 aq~ltLtF~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 131 AQRLTLTFRVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred eeEEEEEEEEEecccceEEEEeccccceee
Confidence 4455677766666 9999999987765543
No 410
>KOG4597|consensus
Probab=78.47 E-value=4.4 Score=35.08 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=53.0
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEE---CCeec--cccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYK---GNKSI--TEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~---~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
.+..+++..++|.+.|.+ .+.|.|.+ ++..+ ................|.|-+....|+|-|+|.+ .+..+.
T Consensus 207 ~vg~wetcS~tCg~~G~q---~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~-rcg~g~ 282 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQ---YRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA-RCGAGF 282 (560)
T ss_pred hcccchhhcccccccCCc---CceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc-ccccce
Confidence 366789999999999988 68999965 33222 1100011111267788999999999999999999 666433
Q ss_pred CCCceeeeeEE
Q psy15235 193 TTPLAQADFDV 203 (323)
Q Consensus 193 ~~~~~~~~l~v 203 (323)
....+.+.+
T Consensus 283 --~~rdv~c~s 291 (560)
T KOG4597|consen 283 --LRRDVPCSS 291 (560)
T ss_pred --eeccceeee
Confidence 334444433
No 411
>PHA03112 IL-18 binding protein; Provisional
Probab=74.42 E-value=24 Score=25.35 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=44.2
Q ss_pred eeCCeEEEEEEEecC-CC-CcEEEEECC-eeeec------cCCeeeeecC--CCCCCcceeEEEeecCcC-CCeEEEEEE
Q psy15235 218 IEGEKLRLECLVVGS-PP-PTVEWRIGN-DTYFR------SQGRIKLSEH--PEKGTANSVLQIDEATMA-DRGNYYCHG 285 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~-p~-~~~~W~~~~-~~~~~------~~~~~~~~~~--~~~~~~~~~L~i~~v~~~-d~G~y~C~a 285 (323)
.+++.+.|.|.+-++ |. ..+.|..++ +.... -.++...... ...+.....|.+.+++.+ +..+++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458999999999755 55 359999765 22211 1111111110 111234677888888865 445899998
Q ss_pred eecccC
Q psy15235 286 NNVATR 291 (323)
Q Consensus 286 ~n~~g~ 291 (323)
-...|.
T Consensus 116 ~D~~~~ 121 (141)
T PHA03112 116 MDLDGP 121 (141)
T ss_pred ecCCch
Confidence 877643
No 412
>KOG1026|consensus
Probab=74.19 E-value=7.1 Score=36.50 Aligned_cols=147 Identities=13% Similarity=0.179 Sum_probs=76.1
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
+..|..+++.|...+.+ .+.+.|+..+..... .......-........ .+.|.+ .+..+. ....
T Consensus 204 v~~~~~~~~~c~~~~~~---vp~~~~~~~~~~~~~----~~~~~~~c~~~~~~~~------~~~c~~-E~~~~~--~~~~ 267 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIP---VPCHYWFPNCLASSN----TNQTSSLCRSECEVLE------NDLCIA-ENAVAR--SNPS 267 (774)
T ss_pred hcccchheeeeecccCC---CcceeeecccccccC----CCcccccccccceeee------chhhHH-HHhhhh--cCce
Confidence 56789999999999988 789999887655443 1110000001111111 178888 666322 3333
Q ss_pred eeeEEEecceeeeeceeEEeeCCeEEEEEEEe---cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVV---GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275 (323)
Q Consensus 199 ~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~---g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 275 (323)
+.+.+..++....+... .+-.-.|... ++|.+...|..++..+...+ ....+.... ...+......-
T Consensus 268 v~~~~~~p~~~~~~~~~-----~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~t~s~~----~~C~~~~~~~h 337 (774)
T KOG1026|consen 268 ILLVVDLPKAEVLLCSP-----LSDHHNCIPIGITANPGPALHWCYNGSGLNYRG-TVCVTKSGK----EQCLPWNDPPH 337 (774)
T ss_pred eeeEEecccccccCCCC-----ccccCceeeeeccCCCCCceeeeecCccceEec-ccccccccC----cCCcccCcCcc
Confidence 34443333222111100 0002334442 45677899999887654321 111110000 02233333356
Q ss_pred CCCeEEEEEEeecccC
Q psy15235 276 ADRGNYYCHGNNVATR 291 (323)
Q Consensus 276 ~d~G~y~C~a~n~~g~ 291 (323)
.+.|+|+|++.+..|.
T Consensus 338 ~~~~~~~~~~e~~~g~ 353 (774)
T KOG1026|consen 338 SHNGNYTLFPELPGGK 353 (774)
T ss_pred cccCcceeeecccCcc
Confidence 6789999999999876
No 413
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.15 E-value=27 Score=23.14 Aligned_cols=61 Identities=10% Similarity=0.267 Sum_probs=32.1
Q ss_pred EEEEEEeecCCCCCCceEEEEEC--Cee-ccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKG--NKS-ITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~--~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.-.|.+.+..| +..|.|.-+ |.. .......++.+ .-...+.+......|.-..+|.+ .+.
T Consensus 23 ~VA~CiSa~GrP--pa~ItW~t~l~G~~etq~~~~~~GT~-TV~S~y~lVPs~~~~gk~lTCvV-~h~ 86 (98)
T cd05890 23 LVATCVSANGKP--PSVVRWDTRLKGEAEFQEIRNQNGTV-TVISRYRLVPSREAHKQKLTCIV-NYR 86 (98)
T ss_pred EEEEEEcCCCcC--CcEeEEEccCCCceeeeeeCCCCCCE-EEEEEEEEeECHHHcCCEeEEEE-Eec
Confidence 445798544443 679999742 321 11100111111 22344555555566777999999 554
No 414
>PHA03282 envelope glycoprotein E; Provisional
Probab=66.28 E-value=18 Score=31.54 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=30.6
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
+.+|.|.+++.+|+|.|+-.+...... ..+...+.|.|...+
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~--~~~~~~v~l~V~p~~ 164 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNS--TAARAVVFLVVGPRP 164 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCc--hhheEEEEEEecCCC
Confidence 677999999999999999987544322 235566777776653
No 415
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=64.66 E-value=36 Score=22.09 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=33.5
Q ss_pred eEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 222 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...|...+.+. ...+.|+.||..+..... ...+.+. ....|.|+-.+....|+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-------------~~~~~~~---~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-------------GHQLFWQ---PDRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-------------CCeEEeC---CCCCeeEEEEEEcCCCC
Confidence 44555555544 449999999998832221 2223232 34579999999888866
No 416
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=64.38 E-value=32 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.4
Q ss_pred CCcEEEEEEeccCceEEEEEcCcccee
Q psy15235 36 GAPINISCILTIFEQVKWQLNGRNINQ 62 (323)
Q Consensus 36 G~~v~L~C~~~~~~~v~W~~~g~~~~~ 62 (323)
...+.|.+... ...+.|+.||..+..
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~ 56 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGT 56 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEccc
Confidence 56677777654 459999999998844
No 417
>PHA03240 envelope glycoprotein M; Provisional
Probab=61.88 E-value=35 Score=26.31 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=20.9
Q ss_pred ceEEecCCcEEEEEE-e-ccCceEEEEE
Q psy15235 30 DTEIMEGAPINISCI-L-TIFEQVKWQL 55 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~-~-~~~~~v~W~~ 55 (323)
++.+.+|++|+|.-. + .+...+.|++
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 467889999999876 3 3567899999
No 418
>PHA03240 envelope glycoprotein M; Provisional
Probab=58.57 E-value=70 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.2
Q ss_pred eceeEEEEeeeecCCCeeEEEEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
..+.+|.|.++..+|+|+|.-.-
T Consensus 102 C~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 102 CHNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred eccceEEEEEEeecCcchhhhcc
Confidence 66789999999999999996444
No 419
>PHA03112 IL-18 binding protein; Provisional
Probab=54.54 E-value=77 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.8
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~ 148 (323)
.+++++.|+|.+-+..|. ..-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~-fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPK-FSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCC-ceEEEEEcCC
Confidence 358999999999876542 3578898655
No 420
>PHA03283 envelope glycoprotein E; Provisional
Probab=53.35 E-value=37 Score=30.25 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=33.8
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.+.|+|.+++.+++|.|+-..++..+ +....+.|.|++++
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~----~~~~vflvtVk~~~ 172 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM----MKHSVFFVTVKKPP 172 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc----eEEEEEEEEecCCC
Confidence 57799999999999999999998663 47888889998843
No 421
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=52.73 E-value=65 Score=21.25 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=46.9
Q ss_pred eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--CeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+.|+..++..|+++.+.|...-..| ..+.|.-. ...+.. + ..=..+.+.+++. | ....|.+.-+
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p---~~~GLET~L~k~~~~~----g----~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQP---EKIGLETSLSKTELDS----G----PQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS----SEEEEESSSEEEEEEE----E----TTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred EEECCccEECCCCCEEEEEcCCCCCC---CcceEEEecCCcccCC----C----CcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 44678888999999999999865442 24444211 111111 0 1234567778875 3 5778988322
Q ss_pred CCCCCCCceeeeeEEEecc
Q psy15235 189 KSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p 207 (323)
..+...+..|+|..+|
T Consensus 74 ---g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 74 ---GEQSSASANITVYKPP 89 (91)
T ss_dssp ---TEEEEEEEEEEEEB--
T ss_pred ---CeEEEeEEeeEEeCCC
Confidence 2356677788877665
No 422
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=52.42 E-value=2.1e+02 Score=26.99 Aligned_cols=249 Identities=10% Similarity=0.077 Sum_probs=121.8
Q ss_pred EecCCcEEEEEEeccCce--EEEEEcCccceeeccCcceEEEeeee-CCeEEEEEee--cccCcceEEEeeccCC-----
Q psy15235 33 IMEGAPINISCILTIFEQ--VKWQLNGRNINQSSVDSGFAATANLT-EDNFKYSIHE--AILESGYVQSSLFIPR----- 102 (323)
Q Consensus 33 v~~G~~v~L~C~~~~~~~--v~W~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~--~~~~G~Y~C~~~~~~~----- 102 (323)
...|+.+.|...+.+... +.....|..+..........+.+.+. .|.+.+.+.- ....+.|-+.-.-...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~ 381 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS 381 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccC
Confidence 468999999999765543 33333565554432333333333332 3333222221 1113444433210000
Q ss_pred ccceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEE--EEECCeeccccccccCcEEeceeEEEEeeeecCCCee
Q psy15235 103 MNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIV--WYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQ 180 (323)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~--W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 180 (323)
.........+-+.......|+++.+.|.+.+.. ...++ -.++|..+.. ..+ .....+.+. +.-+|.
T Consensus 382 ~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~---~~lY~f~ik~ng~~ve~-----~~Y-~~~~~~~f~---P~~~G~ 449 (667)
T PRK14081 382 KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGT---NLRYSFIIKKDGKEEEK-----IDY-GKNNWVNFI---PEEKGN 449 (667)
T ss_pred CCCeEEEEEEECCCCceEeCCeEEEEEEecCCC---eEEEEEEEEECCEEEEE-----eec-ccccEEEEE---ECCCee
Confidence 000000000111112244599999999998876 34444 3457776643 111 223334333 467899
Q ss_pred EEEEEEc-CCCCCC--CCceeeeeEEEe-cce-ee---eeceeEEeeCCeEEEEEEEecCCCCcEEE--EECCeeeeccC
Q psy15235 181 YSCRLID-PKSTNT--TPLAQADFDVIM-KPT-AK---LVETLTVIEGEKLRLECLVVGSPPPTVEW--RIGNDTYFRSQ 250 (323)
Q Consensus 181 y~C~~~~-~~~~~~--~~~~~~~l~v~~-~p~-~~---~~~~~~~~~g~~~~l~C~~~g~p~~~~~W--~~~~~~~~~~~ 250 (323)
|+-.+.. +..... .....+.+.|.. .|. +. .+.......|+.+++.|.+.+.....+.. ..||..+...+
T Consensus 450 Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~ 529 (667)
T PRK14081 450 YELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETD 529 (667)
T ss_pred EEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEee
Confidence 9988741 111111 124455666664 443 22 34345567899999999997754444333 34665542110
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC--CCCCceeEEEEEEcce
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR--NSQPNEAFVYVRVKGK 307 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~--~~~~~~~~~~l~v~~~ 307 (323)
+ .....+++. +.-+|.|+-.+.-..+. ..--....+.+.|.+.
T Consensus 530 --Y---------s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~ 574 (667)
T PRK14081 530 --Y---------IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA 574 (667)
T ss_pred --c---------cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC
Confidence 0 023334444 33478887776544332 2233456667777755
No 423
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.49 E-value=63 Score=19.59 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=15.1
Q ss_pred EecCCcEEEEEEeccCceEEEEE
Q psy15235 33 IMEGAPINISCILTIFEQVKWQL 55 (323)
Q Consensus 33 v~~G~~v~L~C~~~~~~~v~W~~ 55 (323)
|..|+.++|. +.+...++|++
T Consensus 2 v~~G~N~TL~--Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV--GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe--CCCCCceEEEE
Confidence 5678888876 44556799994
No 424
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=44.74 E-value=24 Score=31.16 Aligned_cols=143 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe--cceeeee--c--eeEEeeCCeEEEEEEEecC----C
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM--KPTAKLV--E--TLTVIEGEKLRLECLVVGS----P 233 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--~p~~~~~--~--~~~~~~g~~~~l~C~~~g~----p 233 (323)
....+.|......-...|...++-.............+.+.. +|.+.+. . ...+..++.+.|.-.+.+. .
T Consensus 146 ~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~ 225 (440)
T PF02010_consen 146 SSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSS 225 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCC
Confidence 344566644333222236655521221121334444444443 3433321 1 2236677777776666532 2
Q ss_pred CCcEEEEECCee-eeccCCeee-eecCCCCCCcceeEEEeecCcCCCeEEEEE--EeecccCCCCCceeEEEEEEcceec
Q psy15235 234 PPTVEWRIGNDT-YFRSQGRIK-LSEHPEKGTANSVLQIDEATMADRGNYYCH--GNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 234 ~~~~~W~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~--a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
...+.|...... .......+. .......+.....|.|..-..+..+.|... +.+..+. ...+.+.+.+..+|.
T Consensus 226 ~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~---~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 226 NVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGS---SGSASISFTVNAPPS 302 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 346999870000 000000000 000011112456677776656666666654 4444432 125566666655553
No 425
>PF15240 Pro-rich: Proline-rich
Probab=43.79 E-value=21 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHhhhccCCceEEE
Q psy15235 3 MIHLCLSLLAIFVHQSISADGKITY 27 (323)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~i~~ 27 (323)
||++||++.||.+..+-..+..+..
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~ 25 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQ 25 (179)
T ss_pred ChhHHHHHHHHHhhhcccccccccc
Confidence 4555555555555545444444433
No 426
>PHA03283 envelope glycoprotein E; Provisional
Probab=38.03 E-value=2.4e+02 Score=25.50 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=47.2
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec--------ceee-e-e------------ceeEEeeCC
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK--------PTAK-L-V------------ETLTVIEGE 221 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--------p~~~-~-~------------~~~~~~~g~ 221 (323)
....|.|.+++.+++|.|+--. .+.. ......+.++|..+ |... + + .......|+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~-r~d~--~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GD 208 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHV-SSDG--MMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGD 208 (542)
T ss_pred CCCeeEEEecccccCeEEEEEe-cCCC--ceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCC
Confidence 4567999999999999999888 5542 23444455555441 1110 0 0 134467799
Q ss_pred eEEEEEEEecC---C--CCcEEEEE
Q psy15235 222 KLRLECLVVGS---P--PPTVEWRI 241 (323)
Q Consensus 222 ~~~l~C~~~g~---p--~~~~~W~~ 241 (323)
++.+.-..... + ..++.|++
T Consensus 209 tf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 209 SFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred ceeEeEEEeeccCCCCceEEEEEEE
Confidence 99997777432 2 23699986
No 427
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=37.81 E-value=1.8e+02 Score=21.95 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=40.2
Q ss_pred EEEEEec-CCCCcEEEEECCeeeeccCCeeee---ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 225 LECLVVG-SPPPTVEWRIGNDTYFRSQGRIKL---SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 225 l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
-.|..+. ..+|.++|......+.+.. ..+. .+.-.-+...+.+.|...+-.|+-.|.|.+.-..
T Consensus 112 AvCitseL~s~PtitWsVgs~rl~n~g-ftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 112 AVCITSELVSQPTITWSVGSDRLRNDG-FTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEEeeccccCCCeEEEEeccceeecCC-ccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 3466643 3578999998777765432 1111 2111123456777888888788888999988655
No 428
>PHA03282 envelope glycoprotein E; Provisional
Probab=32.88 E-value=1.2e+02 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=28.7
Q ss_pred cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 160 RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 160 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
++.-.+.+|.|.+++.+|+|.|+-.+ ............+.+.|.
T Consensus 118 rvs~~n~tl~l~~a~~~DsG~Y~L~~-~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 118 RVAVVNGTLVLREARETDSGMYVLSV-SRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ceeEecceEEEeeccccCCceEEEEe-cCCCCchhheEEEEEEec
Confidence 33334667999999999999999887 443223233444555554
No 429
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=32.15 E-value=1.5e+02 Score=19.55 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=42.2
Q ss_pred eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|....+..|+++.++|+.. -|.| .+.|.-.-. +..+.. +..=..+.+.+++. | ....|.+.-..
T Consensus 10 P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~-------k~~~~~----g~~W~~f~LsnV~~-d-s~~~C~~~C~g- 74 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLS-------KTELDS----GPQWKAFQLSNVTE-D-SSPLCFFNCSG- 74 (91)
T ss_dssp SSEEEEETTEEEEEEEEES-SSS-SEEEEESSSE-------EEEEEE----ETTEEEEEEEEE-S-C-EEEEEEEEETT-
T ss_pred CCccEECCCCCEEEEEcCC-CCCCCcceEEEecC-------CcccCC----CCcEEEEEEEcccc-C-CeEEEEEEcCC-
Confidence 4456678899999999984 3334 345532111 111110 00234566778885 4 56779988643
Q ss_pred CCCCCceeEEEEEEccee
Q psy15235 291 RNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~ 308 (323)
. .....+.|.|-..|
T Consensus 75 ~---Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 75 E---QSSASANITVYKPP 89 (91)
T ss_dssp E---EEEEEEEEEEEB--
T ss_pred e---EEEeEEeeEEeCCC
Confidence 2 24556666665544
No 430
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=31.67 E-value=1.5e+02 Score=19.35 Aligned_cols=66 Identities=11% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCeEEEEEEEecCCCC-cEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeecCcC-CCeEEEEEEe
Q psy15235 220 GEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGN 286 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~y~C~a~ 286 (323)
.....|.|.+.+-... .+.--++-..+.+... .....++... ......+...-+.. -.|.|+|...
T Consensus 15 ~~etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R-~~ak~vvwkrekas~~~GayyCegk 83 (96)
T PF10430_consen 15 NSETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETR-PHAKKVVWKREKASEAIGAYYCEGK 83 (96)
T ss_dssp SS-EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTS-SSEEEEEE-TTT-SS--EEEEEEEE
T ss_pred cCceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCC-cccceEEEEeeccccccceEEEEEE
Confidence 3445899999764333 3555554433322111 1111111111 12334444444433 3599999998
No 431
>KOG0200|consensus
Probab=31.47 E-value=4.4e+02 Score=24.73 Aligned_cols=117 Identities=15% Similarity=0.267 Sum_probs=60.8
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec-ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEE
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK-PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWR 240 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 240 (323)
....+.+..+...+.|.|+|.+ .+. ....... ..... +.+. .+.......+....+ +...+.+.+.|.
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~-~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLV-SNI----NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWG 81 (609)
T ss_pred ccceEEEEEEEecCCccEEEEE-ecC----ceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceee
Confidence 3456777788889999999999 551 1111111 11111 1111 222333444555555 333346677787
Q ss_pred ECCeee-----ecc---CCe-e-eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 241 IGNDTY-----FRS---QGR-I-KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 241 ~~~~~~-----~~~---~~~-~-~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
...... ... ... . ..............+.+.++...+.|.|.|...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 140 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTV 140 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcc
Confidence 644211 000 000 0 000000001246778899999999999999998744
No 432
>PHA03286 envelope glycoprotein E; Provisional
Probab=29.93 E-value=1.3e+02 Score=26.53 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=32.6
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
.+.|+|.+.+.+.+|.|+-...|..|. +....+.|.|.++
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~---~~~~vflVtV~~~ 165 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRT---AVMDVLVVWVSGH 165 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCc---EEEEEEEEEEecC
Confidence 578999999999999999999987644 4667777788644
No 433
>KOG1026|consensus
Probab=29.61 E-value=35 Score=32.23 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=29.0
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
...+..+..+++.|.+.+.|.|.+.|+.++....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~ 234 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASS 234 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeeccccccc
Confidence 4567789999999999999999999998776654
No 434
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=26.78 E-value=1.6e+02 Score=17.99 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=29.2
Q ss_pred cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 236 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...|++++..+..- .+.+. ++ .-.+-.-+...+...|.++..+....|.
T Consensus 8 ~H~W~~~g~~~~~i--~l~i~----g~-r~Rt~S~k~~~~~~~G~WrV~V~~~~G~ 56 (66)
T PF11141_consen 8 YHRWYKNGKLVARI--PLPIS----GG-RWRTWSSKQNFPDQPGDWRVEVVDEDGQ 56 (66)
T ss_pred EEEEEECCEEEEEE--EEecc----CC-CEEEEEEeecCCCCCcCEEEEEEcCCCC
Confidence 58899999875311 11111 00 1233333444557889999999988866
No 435
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.33 E-value=3.3e+02 Score=20.46 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=33.5
Q ss_pred CCcEEEEEEe-ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEE---eecccCcceEEEeeccCCc
Q psy15235 36 GAPINISCIL-TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI---HEAILESGYVQSSLFIPRM 103 (323)
Q Consensus 36 G~~v~L~C~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~G~Y~C~~~~~~~~ 103 (323)
--..+|.|.. .....+.+..+|+.++-...... +.+++.. .+...+|.|.-...++.+.
T Consensus 44 i~EFsl~C~n~~~~~~LyAeV~Gk~~PVar~~~~---------nkYQVSW~~e~k~a~sG~y~V~~fDEegy 106 (167)
T PF05404_consen 44 IAEFSLKCSNGAKNISLYAEVNGKILPVARSGDT---------NKYQVSWTEEHKKASSGTYEVKFFDEEGY 106 (167)
T ss_pred EEEEEEEeCCCCcCccEEEEECCEEEEEEEcCCC---------CceEEEEEechhhccCCceEEEEeChHHH
Confidence 3456889983 34567888888887776522221 2222222 1222288998888655443
No 436
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.14 E-value=2.2e+02 Score=21.19 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+--|.|.+.+.+|+|.|.-.++=...
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCC
Confidence 56699999999999999999986653
No 437
>PHA03281 envelope glycoprotein E; Provisional
Probab=22.60 E-value=2.2e+02 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=32.4
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.+.|+|.+.+..++|.|+-..+...|. +....+.|.|+++.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~---s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGE---NMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCc---ceeEEEEEEecCCc
Confidence 568999999999999999888866654 34557788887755
No 438
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.18 E-value=1.5e+02 Score=19.00 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=14.6
Q ss_pred CcchhHHHHHHHHHHhhhccC
Q psy15235 1 MSMIHLCLSLLAIFVHQSISA 21 (323)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (323)
|+...++|++|++-+..++.+
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 666677788887776665544
No 439
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.66 E-value=1.8e+02 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.8
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
...-|+|.+.+.+|+|.|.-+++-+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEEC
Confidence 4556899999999999999999544
No 440
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.13 E-value=32 Score=30.37 Aligned_cols=41 Identities=32% Similarity=0.350 Sum_probs=0.0
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.+.|.|.+++.+|+|.|+-...+..+. .....+.|.|.++.
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~---~~~~~~~v~v~~~~ 128 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGW---AHQSVVFVTVKGPA 128 (439)
T ss_dssp --------------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCc---eEEEEEEEEEcCCC
Confidence 577999999999999999999877754 34555777777643
No 441
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=20.76 E-value=1.2e+02 Score=26.76 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=24.5
Q ss_pred EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
+.+.|.... ...+.|................ ......|.|+..... ....|...++..............|+|
T Consensus 3 ~~~~C~~~~-----~~~y~W~~~~~~~~~~~~~~~~-~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V 76 (440)
T PF02010_consen 3 VSLNCNDAS-----TVTYNWTVFSGPSNSIVQDMDN-SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTV 76 (440)
T ss_dssp ------------------BEEEEES-TT-EEESTTT---SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEE
T ss_pred ccccccccc-----ceEEEEEEEecCCcCccccccc-cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEE
Confidence 567883322 4588997632221110000000 123457777776552 223556666312222333455566666
Q ss_pred Eecceee-ee--ceeEEeeCCeEEEEEEEecCC-------CCcEEEEECCe
Q psy15235 204 IMKPTAK-LV--ETLTVIEGEKLRLECLVVGSP-------PPTVEWRIGND 244 (323)
Q Consensus 204 ~~~p~~~-~~--~~~~~~~g~~~~l~C~~~g~p-------~~~~~W~~~~~ 244 (323)
...|... +. ....+..++.+.|.....-+| ...+.|.....
T Consensus 77 ~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~ 127 (440)
T PF02010_consen 77 EPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDL 127 (440)
T ss_dssp E--------------------------------------------------
T ss_pred eeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCC
Confidence 6544222 21 122233345677776554333 13688886543
No 442
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=20.75 E-value=7.4e+02 Score=23.60 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=95.5
Q ss_pred ceEEecCCcEEEEEEeccCce--EE-E-EEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-
Q psy15235 30 DTEIMEGAPINISCILTIFEQ--VK-W-QLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN- 104 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~~~~~--v~-W-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~- 104 (323)
......|+++.+.|.+.+... +. | .++|..+..........+.+.+ ..+|.|+-.+.-.....
T Consensus 395 ~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~f~P------------~~~G~Y~IeV~vKdk~S~ 462 (667)
T PRK14081 395 GKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVNFIP------------EEKGNYELEVRVKDKYSD 462 (667)
T ss_pred CCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEEEEE------------CCCeeEEEEEEEecccCc
Confidence 345678999999999655432 22 2 3366666554222222222222 12677776664322110
Q ss_pred -----ceeeeeee------------CCceeEEecCCcEEEEEEeecCCCCCCceEEE--EECCeeccccccccCcEEece
Q psy15235 105 -----AITGNYDI------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW--YKGNKSITEATELSGRLTQSK 165 (323)
Q Consensus 105 -----~~~~~~~~------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W--~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.....+.+ .+.-.....|+.+++.|.+.+.. ...++. +.+|..+.. ..+ ...
T Consensus 463 ~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k---~v~y~y~~~~NG~~v~~-----t~Y-s~~ 533 (667)
T PRK14081 463 KEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTK---DVLIKYILKINGHKVEE-----TDY-IKN 533 (667)
T ss_pred hhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCC---eEEEEEEEEECCEEEEE-----eec-ccc
Confidence 11122222 12122245799999999998866 444443 446665533 111 122
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCC-CCCC--CCceeeeeEEEecceee----eeceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPK-STNT--TPLAQADFDVIMKPTAK----LVETLTVIEGEKLRLECLVVGSPPPTVE 238 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~-~~~~--~~~~~~~l~v~~~p~~~----~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 238 (323)
..+.+. +--+|.|+-.+..-. .... .....+.+.|..+..+. .........++.+++.-.+.|-....++
T Consensus 534 ~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v~Ye 610 (667)
T PRK14081 534 KKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDVCYE 610 (667)
T ss_pred ceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcEEEE
Confidence 334443 446788987773111 1111 12344555565542222 2234456778888888888655455544
Q ss_pred EE
Q psy15235 239 WR 240 (323)
Q Consensus 239 W~ 240 (323)
++
T Consensus 611 f~ 612 (667)
T PRK14081 611 FY 612 (667)
T ss_pred EE
Confidence 44
No 443
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=20.31 E-value=1.1e+02 Score=21.79 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=11.6
Q ss_pred ceEEecCCcEEEEEEec
Q psy15235 30 DTEIMEGAPINISCILT 46 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~ 46 (323)
+-.+..|++|.++|...
T Consensus 41 pk~I~~GeTvEIR~~l~ 57 (137)
T PF12988_consen 41 PKKIKKGETVEIRCELK 57 (137)
T ss_dssp -SS--TTEEEEEEEEEE
T ss_pred ccccCCCCEEEEEEEEe
Confidence 34578899999999943
Done!