Query psy15235
Match_columns 323
No_of_seqs 208 out of 1661
Neff 11.4
Searched_HMMs 29240
Date Sat Aug 17 00:46:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rik_A Titin; I-SET IG fold, p 100.0 2.4E-35 8.2E-40 241.2 31.8 259 24-306 8-284 (284)
2 1qz1_A Neural cell adhesion mo 100.0 1.8E-34 6.2E-39 236.7 28.0 262 26-306 7-290 (291)
3 3b43_A Titin; I-SET IG fold, e 100.0 2.6E-33 9E-38 250.6 30.6 259 28-310 204-480 (570)
4 3b43_A Titin; I-SET IG fold, e 100.0 2.1E-33 7E-38 251.3 29.3 252 31-305 301-569 (570)
5 2yd9_A Receptor-type tyrosine- 100.0 2.3E-33 7.8E-38 231.7 26.9 264 25-313 10-298 (304)
6 2wim_A N-CAM 2, NCAM2, neural 100.0 1.2E-33 4.2E-38 231.8 24.6 262 27-310 10-288 (291)
7 3kld_A Contactin 4, axcam, BIG 100.0 5.3E-33 1.8E-37 236.9 24.3 249 30-306 111-383 (384)
8 3laf_A Deleted in colorectal c 100.0 3.2E-33 1.1E-37 239.8 22.7 257 28-308 128-403 (403)
9 4fqp_A Poliovirus receptor; im 100.0 6.4E-33 2.2E-37 230.0 22.9 266 23-310 2-308 (313)
10 2y25_A Myomesin; structural pr 100.0 1.1E-32 3.8E-37 228.9 22.1 260 23-306 8-315 (317)
11 2y23_A Myomesin; structural pr 100.0 1.4E-31 4.8E-36 221.7 27.4 248 30-305 10-311 (312)
12 3laf_A Deleted in colorectal c 100.0 4.1E-32 1.4E-36 232.9 24.8 272 18-310 18-315 (403)
13 3rjd_A High affinity immunoglo 100.0 1.1E-31 3.8E-36 216.7 23.5 239 27-306 7-262 (262)
14 4fom_A Poliovirus receptor-rel 100.0 2.7E-33 9.2E-38 231.7 13.8 265 28-310 6-304 (308)
15 2o26_X MAST/stem cell growth f 100.0 6.8E-32 2.3E-36 221.3 21.7 250 28-308 19-290 (290)
16 1cs6_A Axonin-1; neural cell a 100.0 1.5E-31 5.3E-36 227.8 24.0 249 29-305 109-381 (382)
17 1ry7_B FGFR-3, fibroblast grow 100.0 3.7E-33 1.3E-37 233.5 13.4 272 22-311 9-332 (334)
18 4dep_C Interleukin-1 receptor 100.0 5.1E-33 1.7E-37 234.1 14.2 269 27-309 13-336 (349)
19 1itb_B Type 1 interleukin-1 re 100.0 3.2E-32 1.1E-36 225.9 17.9 263 29-306 13-314 (315)
20 3ejj_X Macrophage colony-stimu 100.0 4.6E-31 1.6E-35 216.2 24.3 254 29-309 12-284 (289)
21 3oq3_B IFN-alpha/beta binding 100.0 8.2E-31 2.8E-35 218.7 26.2 259 28-304 36-328 (329)
22 3qs7_E FL cytokine receptor; i 100.0 5.4E-31 1.8E-35 226.5 24.8 254 30-311 148-419 (423)
23 1bih_A Hemolin; insect immunit 100.0 1.4E-30 4.7E-35 222.9 27.2 254 29-305 108-395 (395)
24 3p3y_A Neurofascin; IG domains 100.0 3.3E-31 1.1E-35 227.3 22.6 253 29-306 124-403 (404)
25 3kld_A Contactin 4, axcam, BIG 100.0 7.7E-31 2.6E-35 223.6 24.2 261 26-310 10-298 (384)
26 2v5m_A Dscam; neurobiology SPL 100.0 7.9E-31 2.7E-35 223.8 23.9 248 29-304 111-387 (388)
27 2ec8_A MAST/stem cell growth f 100.0 2.7E-30 9.2E-35 229.1 26.7 269 27-311 120-416 (524)
28 3qs9_E FL cytokine receptor; i 100.0 1.6E-30 5.6E-35 229.2 22.9 252 30-310 148-418 (527)
29 1wio_A CD4, T-cell surface gly 100.0 5.6E-31 1.9E-35 222.8 17.7 253 30-305 3-292 (363)
30 3qs7_E FL cytokine receptor; i 100.0 5.2E-30 1.8E-34 220.4 23.8 259 26-309 53-326 (423)
31 1e07_A Carcinoembryonic antige 100.0 1.8E-29 6.3E-34 229.0 28.2 234 28-305 388-641 (642)
32 2ec8_A MAST/stem cell growth f 100.0 1.1E-30 3.8E-35 231.6 19.5 249 29-310 44-313 (524)
33 3u83_A Poliovirus receptor-rel 100.0 9.3E-30 3.2E-34 212.5 22.7 268 22-310 15-324 (331)
34 3p3y_A Neurofascin; IG domains 100.0 2.1E-30 7.2E-35 222.3 18.3 261 28-310 24-315 (404)
35 3vh8_G Killer cell immunoglobu 100.0 1.4E-29 4.8E-34 210.1 21.7 266 22-308 24-315 (316)
36 2wng_A Tyrosine-protein phosph 100.0 9.7E-30 3.3E-34 212.1 20.8 268 28-303 10-317 (327)
37 3mjg_X Beta-type platelet-deri 100.0 1.3E-28 4.3E-33 201.7 26.0 255 29-311 8-283 (289)
38 1e07_A Carcinoembryonic antige 100.0 1.3E-28 4.5E-33 223.4 28.5 250 29-309 297-560 (642)
39 3dmk_A DOWN syndrome cell adhe 100.0 5.9E-29 2E-33 231.6 25.9 256 30-309 257-529 (816)
40 1bih_A Hemolin; insect immunit 100.0 3.3E-29 1.1E-33 214.2 22.0 266 27-311 12-312 (395)
41 4dkd_C Macrophage colony-stimu 100.0 1.3E-29 4.5E-34 207.9 18.7 257 28-311 11-286 (292)
42 3o4o_C Interleukin-1 receptor 100.0 5.6E-31 1.9E-35 220.7 10.1 264 25-304 22-333 (339)
43 2oz4_A Intercellular adhesion 100.0 1.3E-28 4.6E-33 199.1 23.2 231 30-306 12-264 (265)
44 3dmk_A DOWN syndrome cell adhe 100.0 1.1E-28 3.7E-33 229.8 25.7 247 28-310 350-621 (816)
45 1cs6_A Axonin-1; neural cell a 100.0 2.6E-29 8.8E-34 214.0 18.9 259 27-310 10-297 (382)
46 2v5m_A Dscam; neurobiology SPL 100.0 4.4E-29 1.5E-33 213.0 18.3 263 30-310 13-310 (388)
47 2rcj_C Light chain; immunoglob 100.0 7.3E-28 2.5E-32 213.4 25.1 272 24-306 3-316 (523)
48 3qs9_E FL cytokine receptor; i 100.0 5.3E-28 1.8E-32 213.2 22.7 258 28-309 55-326 (527)
49 1wio_A CD4, T-cell surface gly 100.0 3.4E-28 1.2E-32 205.7 19.4 224 29-304 104-361 (363)
50 2ocw_A Polymeric-immunoglobuli 100.0 1.1E-26 3.6E-31 208.7 29.1 267 29-308 225-548 (585)
51 1qgc_4 Protein (immunoglobulin 100.0 1.1E-26 3.9E-31 201.3 28.3 252 27-290 7-321 (438)
52 2ocw_A Polymeric-immunoglobuli 100.0 1.5E-26 5.1E-31 207.8 28.5 275 28-311 119-446 (585)
53 2rcj_C Light chain; immunoglob 100.0 4.6E-27 1.6E-31 208.3 23.2 252 29-291 122-409 (523)
54 1z7z_I Intercellular adhesion 100.0 3.9E-26 1.3E-30 198.6 25.6 254 27-313 92-374 (450)
55 2wqr_A IG epsilon chain C regi 100.0 2.9E-27 9.9E-32 196.8 17.1 244 37-290 25-308 (323)
56 3v2a_R Vascular endothelial gr 99.9 6.8E-30 2.3E-34 236.6 0.0 265 32-312 434-762 (772)
57 1z7z_I Intercellular adhesion 99.9 4.6E-26 1.6E-30 198.2 23.7 246 27-309 5-285 (450)
58 1igt_B IGG2A intact antibody - 99.9 1.7E-26 5.8E-31 200.5 19.5 261 24-291 3-330 (444)
59 2yd1_A Tyrosine-protein phosph 99.9 9E-26 3.1E-30 176.2 21.5 184 107-310 6-204 (212)
60 1za6_B IGG heavy chain; immuno 99.9 1.9E-26 6.5E-31 193.5 17.3 262 24-290 3-329 (344)
61 2nzi_A Titin; IG-domain, FNIII 99.9 3.6E-25 1.2E-29 182.6 24.1 235 26-291 9-279 (305)
62 1qgc_4 Protein (immunoglobulin 99.9 2.6E-26 9E-31 199.0 17.9 250 34-291 129-428 (438)
63 2a38_A Titin; Z1Z2, structural 99.9 2.3E-25 7.9E-30 171.4 21.1 184 107-305 5-194 (194)
64 2wv3_A Neuroplastin; igcam, me 99.9 7.9E-25 2.7E-29 167.9 22.1 178 110-305 6-189 (190)
65 3lcy_A Titin; A-BAND, IG tande 99.9 8.1E-25 2.8E-29 168.6 21.9 182 107-307 7-197 (197)
66 2va4_A NCAM2, N-CAM 2, neural 99.9 4.1E-25 1.4E-29 169.6 19.9 172 116-305 13-192 (192)
67 2j8h_A Titin, connectin; cardi 99.9 4.1E-25 1.4E-29 170.4 19.8 182 107-306 4-197 (197)
68 2v5t_A NCAM2, N-CAM 2, neural 99.9 1.9E-25 6.6E-30 171.0 17.5 181 108-305 3-187 (189)
69 2jll_A NCAM2, neural cell adhe 99.9 7.2E-24 2.4E-28 180.8 29.0 252 23-291 2-277 (389)
70 2v44_A NCAM2, neural cell adhe 99.9 7.6E-25 2.6E-29 167.8 20.6 177 109-304 4-187 (189)
71 2yd6_A PTPRD protein; hydrolas 99.9 9.8E-25 3.3E-29 170.3 21.3 185 106-307 5-205 (212)
72 2iep_A Muscle-specific kinase 99.9 4.1E-25 1.4E-29 169.7 18.6 183 107-308 7-192 (192)
73 3v2a_R Vascular endothelial gr 99.9 6.4E-26 2.2E-30 210.0 15.5 262 28-310 133-423 (772)
74 3rbs_A Myomesin-1; immunoglobu 99.9 9.3E-25 3.2E-29 169.4 18.4 167 117-305 12-206 (207)
75 1igt_B IGG2A intact antibody - 99.9 4.2E-25 1.4E-29 191.7 18.2 251 33-289 135-432 (444)
76 1epf_A NCAM, protein (neural c 99.9 1E-24 3.5E-29 167.3 18.1 168 110-291 5-180 (191)
77 3sgj_C Human FCG3A receptor; r 99.9 9.5E-25 3.2E-29 169.1 17.6 170 108-310 8-178 (204)
78 2rik_A Titin; I-SET IG fold, p 99.9 6.9E-24 2.4E-28 173.1 23.3 186 107-311 5-196 (284)
79 1fnl_A Low affinity immunoglob 99.9 9.9E-25 3.4E-29 165.0 16.8 167 107-306 7-174 (175)
80 1f97_A Junction adhesion molec 99.9 1.3E-24 4.5E-29 169.5 17.9 185 110-306 4-207 (212)
81 1rhf_A Tyrosine-protein kinase 99.9 5E-24 1.7E-28 162.2 20.4 170 109-305 4-182 (182)
82 4fa8_A Secreted protein BARF1; 99.9 3.1E-25 1.1E-29 171.2 13.4 165 117-291 3-191 (203)
83 1hzh_H IGG, immunoglobulin hea 99.9 6.2E-25 2.1E-29 191.4 16.5 260 24-291 3-339 (457)
84 1f2q_A High affinity immunoglo 99.9 1E-24 3.5E-29 165.1 15.0 169 108-309 5-174 (176)
85 2c5d_C AXL oncogene, tyrosine- 99.9 3.2E-24 1.1E-28 165.1 18.0 175 109-304 4-191 (195)
86 2r15_A Myomesin-1; sarcomeric 99.9 1.1E-23 3.8E-28 164.3 21.2 176 114-306 9-210 (212)
87 1ugn_A LIR1, leukocyte immunog 99.9 1.8E-24 6.2E-29 167.0 15.7 188 108-306 6-198 (198)
88 3k0w_A Mucosa-associated lymph 99.9 5.4E-24 1.9E-28 166.8 18.3 172 107-309 18-205 (218)
89 2d3v_A Leukocyte immunoglobuli 99.9 1.2E-24 4.3E-29 167.6 14.1 172 108-290 6-180 (196)
90 2v9r_A Roundabout homolog 1; p 99.9 3.7E-24 1.3E-28 167.0 16.8 190 106-312 8-208 (212)
91 1igy_B IGG1 intact antibody MA 99.9 3.3E-26 1.1E-30 198.1 5.6 260 25-291 3-320 (434)
92 3ojm_B Fibroblast growth facto 99.9 1E-23 3.6E-28 166.6 18.5 187 115-311 27-226 (231)
93 2vr9_A Roundabout 1, ROBO; imm 99.9 3.3E-24 1.1E-28 167.9 15.4 173 107-291 9-195 (217)
94 3p2t_A Leukocyte immunoglobuli 99.9 4.7E-24 1.6E-28 164.3 16.0 184 108-306 6-196 (196)
95 3ry4_A Low affinity immunoglob 99.9 1.3E-23 4.4E-28 158.1 17.6 164 108-304 5-169 (170)
96 1uct_A Immunoglobulin alpha FC 99.9 3.4E-24 1.2E-28 167.6 14.9 185 107-309 9-201 (218)
97 1iga_A IGA1; immunoglobulin; N 99.9 3.8E-23 1.3E-27 180.9 23.2 259 25-291 5-334 (475)
98 1igy_B IGG1 intact antibody MA 99.9 2.1E-25 7.1E-30 193.1 8.8 254 32-290 130-423 (434)
99 1hzh_H IGG, immunoglobulin hea 99.9 5E-24 1.7E-28 185.6 17.5 246 31-289 142-441 (457)
100 3grw_A Fibroblast growth facto 99.9 1.4E-23 4.9E-28 167.0 18.6 191 114-314 22-226 (241)
101 1oll_A NK receptor; immune sys 99.9 1.4E-23 4.8E-28 160.5 17.0 181 108-306 5-188 (188)
102 2nzi_A Titin; IG-domain, FNIII 99.9 5.4E-23 1.9E-27 169.5 21.3 187 107-311 4-202 (305)
103 3b5h_A Cervical EMMPRIN, HAB18 99.9 9.1E-23 3.1E-27 155.5 20.6 167 118-306 9-183 (184)
104 1nbq_A JAM, junctional adhesio 99.9 1.3E-24 4.3E-29 169.2 10.3 189 111-305 8-208 (209)
105 2ifg_A High affinity nerve gro 99.9 2.8E-24 9.7E-29 180.4 12.6 204 90-308 137-347 (347)
106 3s97_C Contactin-1; carbonic a 99.9 1.4E-23 4.9E-28 162.2 15.0 175 113-305 14-200 (201)
107 3bp6_B Programmed cell death 1 99.9 2.4E-23 8.2E-28 161.2 15.7 180 113-310 8-197 (202)
108 2jll_A NCAM2, neural cell adhe 99.9 2.2E-22 7.6E-27 171.6 22.7 182 115-310 8-198 (389)
109 2yd9_A Receptor-type tyrosine- 99.9 8.1E-23 2.8E-27 168.4 19.2 180 107-305 6-202 (304)
110 2gi7_A GPVI protein; IG-like d 99.9 2.5E-23 8.6E-28 158.6 14.6 171 108-304 9-183 (184)
111 3jz7_A MCAR, CAR, coxsackievir 99.9 2E-23 7E-28 162.9 14.2 181 113-307 6-213 (214)
112 1qz1_A Neural cell adhesion mo 99.9 1.1E-22 3.9E-27 166.4 19.2 186 109-310 4-197 (291)
113 2ny1_B T-cell surface glycopro 99.9 7E-23 2.4E-27 156.1 16.7 163 116-310 4-183 (184)
114 3r4d_A CEA-related cell adhesi 99.9 4.5E-23 1.5E-27 160.3 15.7 178 115-309 7-203 (208)
115 1iga_A IGA1; immunoglobulin; N 99.9 2.2E-22 7.5E-27 176.1 21.4 248 33-290 138-442 (475)
116 2fbo_J V1V2;, variable region- 99.9 4.6E-23 1.6E-27 164.9 15.7 187 113-304 8-250 (250)
117 2x1w_L Vascular endothelial gr 99.9 6.2E-23 2.1E-27 160.2 16.1 184 113-310 13-211 (213)
118 1vca_A VCAM-D1,2, human vascul 99.9 2.5E-22 8.7E-27 155.2 18.1 182 117-309 11-200 (202)
119 1zvo_C Myeloma immunoglobulin 99.9 1.6E-21 5.4E-26 171.9 25.0 264 24-291 3-386 (512)
120 4f80_A Butyrophilin subfamily 99.9 5.6E-22 1.9E-26 156.2 19.9 182 113-306 10-213 (226)
121 3rjd_A High affinity immunoglo 99.9 3.2E-22 1.1E-26 161.2 18.4 165 108-307 2-168 (262)
122 1p6f_A NKP46, natural cytotoxi 99.9 5.9E-22 2E-26 157.2 17.9 185 107-309 7-194 (242)
123 2wim_A N-CAM 2, NCAM2, neural 99.9 5.3E-22 1.8E-26 162.4 18.3 185 107-310 4-195 (291)
124 4frw_A Poliovirus receptor-rel 99.9 1.7E-22 5.7E-27 158.0 14.6 185 114-306 6-213 (218)
125 3sbw_C Programmed cell death 1 99.9 3E-21 1E-25 151.5 21.4 190 113-313 7-218 (222)
126 3o4o_C Interleukin-1 receptor 99.9 1E-22 3.5E-27 170.5 13.4 191 106-308 17-222 (339)
127 2c1o_A IGK-C protein; FAB frag 99.9 4E-22 1.4E-26 160.0 16.3 205 85-291 11-244 (254)
128 1hng_A CD2; T lymphocyte adhes 99.9 1.1E-22 3.9E-27 153.6 12.0 161 117-304 6-174 (176)
129 4i0k_A CD276 antigen; immunogl 99.9 2.1E-22 7.2E-27 158.2 13.9 191 117-317 5-217 (222)
130 1sy6_A T-cell surface glycopro 99.9 1.4E-22 4.7E-27 156.9 12.0 156 119-305 15-203 (204)
131 1jbj_A CD3 epsilon and gamma e 99.9 1E-22 3.5E-27 155.4 10.3 146 114-291 6-178 (186)
132 1nkr_A P58-CL42 KIR; inhibitor 99.9 3.9E-21 1.3E-25 148.5 18.5 168 108-289 9-184 (201)
133 3rbs_A Myomesin-1; immunoglobu 99.9 8.8E-22 3E-26 152.6 14.5 152 27-190 8-194 (207)
134 1b6u_A KIR2DL3, P58 killer cel 99.9 4.4E-21 1.5E-25 153.3 17.6 190 108-311 8-206 (257)
135 3mj8_L Stimulatory hamster ant 99.9 1.4E-21 4.9E-26 152.4 14.3 172 116-291 9-202 (213)
136 1mq8_A ICAM-1, intercellular a 99.9 6.6E-22 2.2E-26 159.9 12.5 253 28-310 6-286 (291)
137 1zvo_C Myeloma immunoglobulin 99.9 6.1E-20 2.1E-24 161.8 25.8 179 120-306 310-505 (512)
138 3pv7_A B7-H6, IG-like domain-c 99.9 4.1E-21 1.4E-25 153.5 16.0 187 113-304 9-224 (248)
139 3mj6_A Junctional adhesion mol 99.9 2.4E-21 8.2E-26 156.6 13.9 185 112-310 10-241 (268)
140 3d9a_L Light chain of hyhel10 99.9 6.8E-21 2.3E-25 148.6 15.9 174 113-291 7-202 (213)
141 2a38_A Titin; Z1Z2, structural 99.9 2.3E-20 7.7E-25 143.3 18.4 164 27-203 11-193 (194)
142 2if7_A SLAM family member 6; N 99.9 1.7E-20 5.9E-25 143.8 17.2 157 113-291 4-181 (193)
143 2j8h_A Titin, connectin; cardi 99.9 2.7E-20 9.2E-25 143.3 18.3 165 26-203 9-195 (197)
144 3oq3_B IFN-alpha/beta binding 99.9 1.5E-21 5E-26 162.7 12.1 177 116-308 38-226 (329)
145 1dr9_A B7-1 (CD80), T lymphocy 99.9 9.4E-21 3.2E-25 146.4 15.5 173 117-302 4-197 (201)
146 2zg1_A Sialic acid-binding IG- 99.9 7.9E-21 2.7E-25 148.3 14.7 174 113-304 6-213 (214)
147 1ry7_B FGFR-3, fibroblast grow 99.9 2.9E-22 9.8E-27 167.3 6.6 178 113-308 14-218 (334)
148 3vh8_G Killer cell immunoglobu 99.9 2E-20 6.7E-25 155.0 17.2 185 107-306 24-215 (316)
149 2yd6_A PTPRD protein; hydrolas 99.9 9.8E-20 3.4E-24 141.9 19.6 172 26-207 11-206 (212)
150 4dep_C Interleukin-1 receptor 99.9 2E-20 6.9E-25 157.1 16.5 181 115-307 15-218 (349)
151 2iep_A Muscle-specific kinase 99.9 1.5E-20 5.1E-25 144.1 14.4 165 28-207 14-192 (192)
152 2y25_A Myomesin; structural pr 99.9 1.8E-21 6.3E-26 161.2 9.9 172 116-305 15-199 (317)
153 2yd1_A Tyrosine-protein phosph 99.9 1E-19 3.4E-24 141.8 19.2 171 25-206 10-201 (212)
154 1itb_B Type 1 interleukin-1 re 99.9 2.4E-21 8.3E-26 160.4 10.4 176 116-305 14-201 (315)
155 1lk3_L 9D7 light chain; antige 99.8 4.1E-20 1.4E-24 143.8 16.7 173 114-291 7-201 (210)
156 3lcy_A Titin; A-BAND, IG tande 99.8 1.3E-19 4.5E-24 139.3 19.3 163 27-204 13-195 (197)
157 4fa8_A Secreted protein BARF1; 99.8 1.8E-20 6.2E-25 144.4 14.2 158 30-191 2-190 (203)
158 3nl4_L Antigen binding fragmen 99.8 5E-20 1.7E-24 143.6 16.8 170 113-286 7-198 (213)
159 3s96_B 3B5H10 FAB light chain; 99.8 1.2E-20 4.2E-25 147.6 13.0 172 116-291 9-209 (218)
160 1nqb_A Single-chain antibody f 99.8 1.5E-19 5.1E-24 145.0 19.2 171 113-289 6-219 (256)
161 2v44_A NCAM2, neural cell adhe 99.8 1.2E-19 4.2E-24 138.7 17.8 166 27-203 8-187 (189)
162 2wv3_A Neuroplastin; igcam, me 99.8 1.9E-19 6.6E-24 137.7 18.8 163 23-203 4-188 (190)
163 1epf_A NCAM, protein (neural c 99.8 1.1E-19 3.7E-24 139.2 17.3 155 26-189 7-177 (191)
164 2y23_A Myomesin; structural pr 99.8 1.9E-19 6.3E-24 148.7 19.9 161 116-289 10-189 (312)
165 4fmk_A Poliovirus receptor-rel 99.8 2.6E-20 8.9E-25 146.2 14.1 186 116-307 10-220 (225)
166 2wng_A Tyrosine-protein phosph 99.8 2.6E-20 8.9E-25 155.0 14.8 176 112-291 8-205 (327)
167 3sgj_C Human FCG3A receptor; r 99.8 9.3E-20 3.2E-24 141.0 16.6 159 23-206 8-175 (204)
168 3tv3_L PGT128 light chain, IG 99.8 1.5E-20 5E-25 146.4 11.9 170 116-291 9-200 (211)
169 2ghw_B Anti-SARS SCFV antibody 99.8 1.2E-19 4.2E-24 144.8 17.4 169 115-289 10-228 (247)
170 1nfd_E H57 FAB; complex (immun 99.8 2.7E-21 9.4E-26 150.7 7.5 174 114-291 6-201 (212)
171 1hnf_A CD2; T lymphocyte adhes 99.8 4.9E-20 1.7E-24 139.3 14.0 159 115-304 7-179 (182)
172 1q0x_L FAB 9B1, light chain; a 99.8 6.2E-20 2.1E-24 143.0 15.0 175 114-290 7-203 (212)
173 4fom_A Poliovirus receptor-rel 99.8 2.1E-20 7.3E-25 154.2 13.0 183 118-310 10-214 (308)
174 3r06_A Anti-mouse CD3epsilon a 99.8 8.6E-20 2.9E-24 142.3 15.5 173 113-290 7-201 (213)
175 1fnl_A Low affinity immunoglob 99.8 1.2E-19 4E-24 137.0 15.7 156 22-204 7-173 (175)
176 1f2q_A High affinity immunoglo 99.8 5.3E-20 1.8E-24 139.1 13.4 157 27-208 10-174 (176)
177 2pet_A Lutheran blood group gl 99.8 3.1E-20 1.1E-24 146.6 12.6 172 113-288 6-211 (231)
178 2r15_A Myomesin-1; sarcomeric 99.8 2E-19 6.9E-24 140.0 17.0 156 34-204 15-209 (212)
179 3auv_A SC-DSFV derived from th 99.8 2.6E-19 8.8E-24 145.3 18.2 169 113-288 18-235 (276)
180 3s97_C Contactin-1; carbonic a 99.8 5.2E-20 1.8E-24 142.1 13.0 163 27-204 14-200 (201)
181 2xzc_L FAB A.17 light chain; i 99.8 1E-19 3.4E-24 142.2 14.7 176 114-291 7-204 (216)
182 4fqp_A Poliovirus receptor; im 99.8 1.2E-19 4E-24 150.1 15.5 190 113-309 6-218 (313)
183 1c1e_H Catalytic antibody 1E9 99.8 6.7E-20 2.3E-24 143.6 13.3 173 114-291 7-209 (219)
184 3sob_L Antibody light chain; b 99.8 2.5E-19 8.5E-24 142.0 16.6 174 113-291 30-225 (237)
185 3qib_D 2B4 beta chain; IG doma 99.8 8.1E-20 2.8E-24 147.8 13.6 199 88-291 6-244 (270)
186 1ccz_A Protein (CD58); LFA-3, 99.8 1.6E-19 5.5E-24 135.4 14.1 151 116-302 4-167 (171)
187 1f3r_B FV antibody fragment; I 99.8 9.9E-20 3.4E-24 146.2 13.8 168 116-289 9-232 (257)
188 2v5t_A NCAM2, N-CAM 2, neural 99.8 1E-19 3.5E-24 139.0 13.2 164 25-204 6-187 (189)
189 3ux9_B SCFV antibody; five hel 99.8 4.3E-19 1.5E-23 142.4 17.2 172 113-289 8-236 (256)
190 2p1y_A Bispecific alpha/beta T 99.8 3.4E-19 1.2E-23 141.4 16.3 170 113-289 6-222 (238)
191 2c5d_C AXL oncogene, tyrosine- 99.8 8.6E-19 2.9E-23 134.6 17.7 165 24-203 5-191 (195)
192 3esu_F Antibody 14B7* light ch 99.8 3.8E-19 1.3E-23 142.2 16.1 168 113-287 10-231 (250)
193 3k0w_A Mucosa-associated lymph 99.8 4.2E-19 1.4E-23 138.9 16.0 155 27-209 24-206 (218)
194 3eow_R Poliovirus receptor; im 99.8 2.6E-20 8.8E-25 146.2 9.0 183 115-305 7-211 (221)
195 2znx_A SCFV; fluorotryptohpan, 99.8 5.3E-19 1.8E-23 140.6 16.6 169 113-288 7-222 (242)
196 2ny1_B T-cell surface glycopro 99.8 1.6E-19 5.5E-24 137.4 13.0 161 30-207 4-181 (184)
197 3umt_A SCFV heavy chain and li 99.8 8.1E-19 2.8E-23 140.8 17.7 188 115-311 10-250 (256)
198 4dzb_B Vbeta2 (MAIT T cell rec 99.8 3.6E-19 1.2E-23 141.9 15.5 173 113-291 7-220 (246)
199 1qok_A MFE-23 recombinant anti 99.8 1.1E-18 3.9E-23 141.9 18.5 170 113-289 32-254 (282)
200 2v9r_A Roundabout homolog 1; p 99.8 1.4E-19 4.9E-24 140.8 12.6 175 27-210 15-207 (212)
201 2vol_A Murine IGG FC; FC, zinc 99.8 5.8E-20 2E-24 142.6 10.3 168 119-290 15-196 (207)
202 1uct_A Immunoglobulin alpha FC 99.8 4.2E-19 1.4E-23 138.7 15.1 172 21-205 8-198 (218)
203 2va4_A NCAM2, N-CAM 2, neural 99.8 6.6E-19 2.2E-23 134.8 15.9 162 29-203 12-191 (192)
204 3uzq_A Anti-dengue MAB 4E11; d 99.8 1.1E-18 3.8E-23 139.8 17.5 188 113-310 7-248 (253)
205 3juy_B 3B3 single chain varian 99.8 1.7E-18 5.9E-23 138.9 18.6 171 113-290 12-244 (256)
206 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 2.5E-18 8.5E-23 137.9 19.3 172 112-291 8-235 (256)
207 2j6e_L IGM, FAB light chain; a 99.8 6.7E-20 2.3E-24 145.0 9.7 175 114-291 26-224 (234)
208 1rhf_A Tyrosine-protein kinase 99.8 1.4E-18 4.8E-23 131.9 16.5 148 27-190 8-169 (182)
209 1moe_A Anti-CEA MAB T84.66; an 99.8 1.3E-18 4.4E-23 138.2 16.8 170 113-288 7-220 (240)
210 2o26_X MAST/stem cell growth f 99.8 6.3E-19 2.1E-23 144.1 15.2 167 107-305 12-182 (290)
211 3u83_A Poliovirus receptor-rel 99.8 1.2E-18 4E-23 145.2 17.1 188 113-309 20-233 (331)
212 4frw_A Poliovirus receptor-rel 99.8 6.3E-19 2.2E-23 137.5 14.5 173 24-204 2-212 (218)
213 1mju_H Immunoglobulin MS6-12; 99.8 3.3E-19 1.1E-23 140.3 12.9 189 113-312 6-223 (227)
214 3bkj_L WO2 IGG2A FAB fragment 99.8 5.5E-19 1.9E-23 141.4 14.3 184 1-189 13-237 (252)
215 2gi7_A GPVI protein; IG-like d 99.8 2.5E-18 8.6E-23 130.7 17.1 147 21-189 7-166 (184)
216 1vca_A VCAM-D1,2, human vascul 99.8 3.1E-18 1.1E-22 132.2 17.7 168 31-208 11-200 (202)
217 3ry4_A Low affinity immunoglob 99.8 1.7E-18 5.9E-23 129.9 15.7 139 28-190 11-157 (170)
218 3d9a_H Heavy chain of hyhel10 99.8 4.9E-19 1.7E-23 137.7 13.0 170 114-291 7-203 (210)
219 3gkz_A Anti-methamphetamine si 99.8 1.5E-18 5.1E-23 139.3 16.2 171 113-289 14-235 (257)
220 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 5.7E-19 2E-23 138.6 13.3 172 115-291 8-212 (222)
221 3grw_A Fibroblast growth facto 99.8 1E-18 3.5E-23 138.8 14.9 171 29-209 23-222 (241)
222 3p2t_A Leukocyte immunoglobuli 99.8 1.6E-18 5.6E-23 133.2 15.6 156 23-190 6-178 (196)
223 2vr9_A Roundabout 1, ROBO; imm 99.8 2.4E-19 8.2E-24 140.2 10.9 160 25-191 13-194 (217)
224 2rgs_A I, IG gamma-2B heavy ch 99.8 8.9E-20 3E-24 142.7 8.4 168 119-290 23-204 (218)
225 2dru_A Chimera of CD48 antigen 99.8 1.1E-18 3.7E-23 132.0 14.2 150 115-291 7-170 (180)
226 3bkj_L WO2 IGG2A FAB fragment 99.8 1.1E-18 3.9E-23 139.6 14.9 177 113-291 40-240 (252)
227 1b6u_A KIR2DL3, P58 killer cel 99.8 2.6E-18 9E-23 137.2 16.8 209 22-244 7-241 (257)
228 1oll_A NK receptor; immune sys 99.8 4.1E-18 1.4E-22 130.0 17.1 165 23-203 5-186 (188)
229 3ojm_B Fibroblast growth facto 99.8 1.1E-18 3.8E-23 137.6 14.3 169 29-207 27-223 (231)
230 3b5h_A Cervical EMMPRIN, HAB18 99.8 4.1E-18 1.4E-22 129.6 17.0 158 31-204 8-182 (184)
231 1dee_B IGM RF 2A2; FAB-IBP com 99.8 3.8E-18 1.3E-22 133.9 17.2 174 115-291 8-216 (223)
232 1pz5_B Heavy chain of FAB (SYA 99.8 1.3E-18 4.5E-23 136.3 14.5 172 114-291 7-210 (220)
233 3ejj_X Macrophage colony-stimu 99.8 6.5E-19 2.2E-23 143.8 12.9 173 109-306 6-181 (289)
234 1svz_A Immunoglobulin;, single 99.8 3.4E-18 1.2E-22 136.4 16.7 172 113-288 7-228 (247)
235 2fbj_H IGA-kappa J539 FAB (hea 99.8 1.3E-18 4.3E-23 136.4 13.9 173 115-291 8-210 (220)
236 3bqu_C 3H6 FAB light chain; be 99.8 1.9E-19 6.5E-24 142.4 9.2 174 113-291 29-224 (233)
237 4f80_A Butyrophilin subfamily 99.8 3.6E-18 1.2E-22 134.3 16.4 170 29-204 12-212 (226)
238 1p6f_A NKP46, natural cytotoxi 99.8 2.3E-18 7.7E-23 136.6 14.8 169 21-205 6-191 (242)
239 3bp6_B Programmed cell death 1 99.8 1.7E-18 5.9E-23 133.7 13.6 167 25-203 5-191 (202)
240 1f97_A Junction adhesion molec 99.8 2E-18 6.7E-23 134.3 13.9 168 28-204 8-206 (212)
241 1jbj_A CD3 epsilon and gamma e 99.8 3.9E-19 1.3E-23 135.4 9.5 130 32-189 10-175 (186)
242 1qok_A MFE-23 recombinant anti 99.8 1.1E-17 3.7E-22 136.2 18.6 184 1-189 5-253 (282)
243 1dn0_B IGM-kappa cold agglutin 99.8 1.2E-17 4.2E-22 131.8 18.3 185 115-306 8-227 (232)
244 3jz7_A MCAR, CAR, coxsackievir 99.8 1.8E-18 6.2E-23 134.7 13.2 168 28-205 7-212 (214)
245 3pl6_D MBP peptide / T-cell re 99.8 3.8E-18 1.3E-22 137.8 15.3 174 113-291 32-241 (268)
246 2x1w_L Vascular endothelial gr 99.8 3.3E-18 1.1E-22 133.3 14.4 172 28-209 14-211 (213)
247 1ugn_A LIR1, leukocyte immunog 99.8 5E-18 1.7E-22 130.7 15.2 157 23-190 6-180 (198)
248 3m8o_H Immunoglobulin A1 heavy 99.8 7.3E-18 2.5E-22 132.1 16.4 175 114-291 7-212 (221)
249 2gjj_A A21 single-chain antibo 99.8 9.5E-18 3.3E-22 135.1 17.3 173 112-288 10-239 (264)
250 3bqu_C 3H6 FAB light chain; be 99.8 5.1E-19 1.8E-23 139.9 9.7 164 21-189 22-221 (233)
251 1hng_A CD2; T lymphocyte adhes 99.8 1.1E-18 3.7E-23 131.7 10.9 142 30-190 5-163 (176)
252 2oz4_A Intercellular adhesion 99.8 1.7E-17 5.9E-22 133.7 18.6 164 118-311 14-187 (265)
253 4ei6_B Vbeta16 XV19 type II na 99.8 7.6E-18 2.6E-22 134.2 16.3 172 113-291 8-219 (245)
254 3omz_A Human vdelta1 gamma del 99.8 9E-18 3.1E-22 134.9 16.8 173 110-288 5-231 (259)
255 1sy6_A T-cell surface glycopro 99.8 6.3E-18 2.1E-22 130.6 14.9 140 33-191 15-191 (204)
256 3nfj_J T cell receptor beta ch 99.8 1.2E-17 3.9E-22 133.1 16.9 175 113-291 7-219 (245)
257 1gsm_A Madcam-1, mucosal addre 99.8 9.1E-18 3.1E-22 128.4 15.4 159 117-289 17-192 (210)
258 4dkd_C Macrophage colony-stimu 99.8 5.8E-19 2E-23 144.3 9.4 174 107-306 4-181 (292)
259 3sob_L Antibody light chain; b 99.8 5.9E-18 2E-22 134.0 14.9 168 20-190 22-223 (237)
260 2d3v_A Leukocyte immunoglobuli 99.8 1.7E-18 5.8E-23 133.1 11.2 154 23-189 6-178 (196)
261 3q5y_A TCR N15 beta; IG, T cel 99.8 1.2E-17 4E-22 132.7 16.1 173 113-291 8-213 (240)
262 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 9.3E-18 3.2E-22 135.5 15.6 172 113-288 21-254 (268)
263 3fku_X Neutralizing antibody F 99.8 5.3E-18 1.8E-22 137.8 13.9 170 114-289 7-234 (280)
264 1op3_H FAB 2G12, heavy chain; 99.8 6.6E-18 2.2E-22 132.8 13.8 172 114-291 7-214 (225)
265 3nl4_H Antigen binding fragmen 99.8 2.4E-18 8.2E-23 134.3 11.2 176 114-303 6-211 (215)
266 3r4d_A CEA-related cell adhesi 99.8 2.7E-17 9.3E-22 127.5 17.0 167 27-207 5-202 (208)
267 1za6_B IGG heavy chain; immuno 99.8 6.8E-18 2.3E-22 141.4 14.6 172 114-291 7-206 (344)
268 2ifg_A High affinity nerve gro 99.8 3.3E-18 1.1E-22 143.5 12.4 169 26-207 163-347 (347)
269 1nbq_A JAM, junctional adhesio 99.8 2.4E-18 8.3E-23 133.4 10.8 170 28-203 11-207 (209)
270 3d9a_L Light chain of hyhel10 99.8 8.9E-18 3E-22 130.8 13.5 159 27-190 7-200 (213)
271 3bae_H WO2 IGG2A FAB fragment 99.8 3.7E-18 1.3E-22 134.4 11.4 173 114-291 7-215 (228)
272 4acp_A IG gamma-1 chain C regi 99.8 1.4E-18 4.8E-23 137.3 8.7 195 91-289 1-216 (240)
273 1nkr_A P58-CL42 KIR; inhibitor 99.8 1.2E-16 4.2E-21 123.2 19.6 153 22-186 8-181 (201)
274 2gki_A Nuclease; anti-DNA anti 99.8 1.5E-17 5E-22 136.0 15.0 170 114-289 29-258 (291)
275 2ghw_B Anti-SARS SCFV antibody 99.8 1E-16 3.5E-21 127.8 19.4 164 22-189 3-227 (247)
276 1lk3_L 9D7 light chain; antige 99.8 7.7E-17 2.6E-21 125.2 18.2 162 24-190 3-199 (210)
277 3liz_H 4C3 monoclonal antibody 99.8 1.8E-17 6.3E-22 132.6 14.8 183 114-305 7-219 (253)
278 3o3u_N Maltose-binding peripla 99.8 9.9E-18 3.4E-22 150.3 14.8 169 117-291 376-566 (581)
279 2j6e_L IGM, FAB light chain; a 99.8 6.7E-18 2.3E-22 133.5 12.1 183 1-189 1-221 (234)
280 1l6x_A Immunoglobulin gamma-1 99.8 2.1E-18 7.1E-23 133.8 8.8 168 120-290 16-196 (207)
281 2wbj_D OB TCR; transmembrane, 99.8 2.2E-17 7.6E-22 134.1 14.7 176 111-291 28-245 (279)
282 2zg1_A Sialic acid-binding IG- 99.8 1.8E-17 6.3E-22 129.1 13.7 169 24-202 3-212 (214)
283 1i1c_A IGG2A, IG gamma-2A chai 99.7 3.8E-18 1.3E-22 135.1 9.4 167 119-290 29-210 (239)
284 3mj8_L Stimulatory hamster ant 99.7 9.6E-17 3.3E-21 124.9 17.2 159 28-189 7-199 (213)
285 4fmk_A Poliovirus receptor-rel 99.7 1.3E-17 4.6E-22 130.6 12.3 179 23-205 3-219 (225)
286 2fbo_J V1V2;, variable region- 99.7 2.9E-17 1E-21 131.1 14.2 156 29-190 10-236 (250)
287 3mj6_A Junctional adhesion mol 99.7 1E-17 3.5E-22 135.3 11.2 173 27-205 11-237 (268)
288 3to4_D NKT vbeta2 (mouse varia 99.7 5.4E-17 1.8E-21 129.9 14.8 172 113-289 7-217 (253)
289 1hxm_B Gamma-delta T-cell rece 99.7 8.2E-17 2.8E-21 127.9 15.6 182 113-304 7-227 (242)
290 2w59_A IGY FCU3-4; immunoglobu 99.7 6.9E-18 2.4E-22 133.1 9.2 173 113-291 19-217 (231)
291 3umt_A SCFV heavy chain and li 99.7 3.6E-16 1.2E-20 125.3 19.1 178 23-205 4-245 (256)
292 2gki_A Nuclease; anti-DNA anti 99.7 1.4E-16 4.8E-21 130.1 17.0 166 20-189 21-257 (291)
293 1nqb_A Single-chain antibody f 99.7 5.2E-16 1.8E-20 124.3 19.6 163 24-189 3-218 (256)
294 2xqy_G A13-D6.3 monoclonal ant 99.7 6.4E-17 2.2E-21 129.8 14.0 172 113-290 12-213 (261)
295 1c5d_H Monoclonal antibody aga 99.7 8E-17 2.7E-21 125.6 14.2 171 114-291 7-205 (215)
296 3sbw_C Programmed cell death 1 99.7 2.8E-16 9.6E-21 123.0 17.4 169 29-208 9-214 (222)
297 1f3r_B FV antibody fragment; I 99.7 2.3E-16 7.8E-21 126.5 16.6 163 23-189 2-231 (257)
298 3tv3_L PGT128 light chain, IG 99.7 1.1E-16 3.8E-21 124.4 14.4 159 28-189 7-197 (211)
299 3uzq_A Anti-dengue MAB 4E11; d 99.7 5E-16 1.7E-20 124.2 18.2 176 25-205 5-244 (253)
300 3nl4_L Antigen binding fragmen 99.7 4.1E-16 1.4E-20 121.3 17.3 152 28-185 8-197 (213)
301 3bn9_D E2 FAB heavy chain; ant 99.7 4.8E-17 1.7E-21 130.0 12.1 171 115-290 8-218 (257)
302 2p1y_A Bispecific alpha/beta T 99.7 6.9E-16 2.4E-20 122.2 18.7 159 26-189 5-221 (238)
303 3qhz_H Human monoclonal antibo 99.7 1.2E-16 4E-21 126.2 14.1 182 116-304 9-227 (232)
304 3knb_B Obscurin-like protein 1 99.7 6.7E-17 2.3E-21 110.8 11.0 94 206-308 13-107 (107)
305 3knb_A Titin; IG-like, titin, 99.7 7.7E-17 2.6E-21 109.2 11.1 93 206-306 5-99 (100)
306 2xzc_L FAB A.17 light chain; i 99.7 7.7E-16 2.6E-20 120.1 18.4 161 27-190 6-202 (216)
307 1q0x_L FAB 9B1, light chain; a 99.7 1.9E-16 6.7E-21 123.1 14.9 162 24-189 3-201 (212)
308 3shs_A HOC head outer capsid p 99.7 3.4E-15 1.2E-19 115.3 21.1 230 28-289 9-281 (304)
309 2c1o_A IGK-C protein; FAB frag 99.7 2.9E-16 9.8E-21 125.7 15.7 161 25-190 42-242 (254)
310 4i0k_A CD276 antigen; immunogl 99.7 9.9E-17 3.4E-21 125.7 12.6 173 29-209 3-210 (222)
311 3tv3_H PGT128 heavy chain, IG 99.7 1.8E-16 6.1E-21 125.7 14.2 184 114-304 7-235 (239)
312 3r06_A Anti-mouse CD3epsilon a 99.7 1.7E-16 5.7E-21 123.6 13.7 159 28-189 8-199 (213)
313 3gkz_A Anti-methamphetamine si 99.7 1.1E-15 3.7E-20 122.6 18.8 165 21-189 8-234 (257)
314 2wqr_A IG epsilon chain C regi 99.7 3.3E-17 1.1E-21 136.0 10.1 161 123-290 25-202 (323)
315 1ccz_A Protein (CD58); LFA-3, 99.7 1.1E-16 3.9E-21 119.8 12.1 145 29-190 3-158 (171)
316 3mtr_A N-CAM-1, NCAM-1, neural 99.7 5.9E-16 2E-20 120.6 16.6 170 107-291 19-198 (215)
317 3pv7_A B7-H6, IG-like domain-c 99.7 5.1E-17 1.7E-21 129.6 10.7 171 28-203 10-224 (248)
318 3auv_A SC-DSFV derived from th 99.7 1.2E-15 4E-20 123.7 18.5 166 22-189 12-235 (276)
319 1nfd_E H57 FAB; complex (immun 99.7 4.6E-17 1.6E-21 126.6 9.6 161 25-190 3-199 (212)
320 2if7_A SLAM family member 6; N 99.7 3.8E-16 1.3E-20 119.6 14.5 146 28-190 5-179 (193)
321 1ypz_F T-cell receptor gamma c 99.7 3.8E-16 1.3E-20 123.0 14.9 172 113-291 7-216 (230)
322 3s96_B 3B5H10 FAB light chain; 99.7 5.9E-16 2E-20 120.9 15.4 159 25-189 4-206 (218)
323 1gsm_A Madcam-1, mucosal addre 99.7 1.9E-15 6.5E-20 115.6 17.2 156 22-189 7-191 (210)
324 1dr9_A B7-1 (CD80), T lymphocy 99.7 1.2E-15 4E-20 117.6 16.2 151 30-189 3-187 (201)
325 1bec_A 14.3.D T cell antigen r 99.7 4.1E-16 1.4E-20 123.6 13.7 172 113-290 5-211 (238)
326 1c1e_H Catalytic antibody 1E9 99.7 8.9E-16 3E-20 120.0 15.4 161 23-189 2-206 (219)
327 3m8o_H Immunoglobulin A1 heavy 99.7 5.4E-15 1.9E-19 115.7 19.9 165 23-189 2-209 (221)
328 3u2s_H PG9 heavy chain; greek 99.7 4.2E-16 1.4E-20 124.1 13.6 182 114-304 6-236 (248)
329 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 6.4E-16 2.2E-20 121.1 14.4 163 23-190 2-210 (222)
330 3shs_A HOC head outer capsid p 99.7 2.1E-15 7.3E-20 116.4 16.6 163 110-301 5-180 (304)
331 2pet_A Lutheran blood group gl 99.7 2E-16 6.9E-21 124.6 11.4 157 26-188 5-210 (231)
332 3juy_B 3B3 single chain varian 99.7 4.7E-15 1.6E-19 118.8 19.5 163 24-189 9-242 (256)
333 2vol_A Murine IGG FC; FC, zinc 99.7 2.6E-16 8.9E-21 121.9 11.8 163 25-189 6-194 (207)
334 2dru_A Chimera of CD48 antigen 99.7 3.5E-16 1.2E-20 118.2 11.8 144 29-190 7-168 (180)
335 1hnf_A CD2; T lymphocyte adhes 99.7 3.7E-16 1.3E-20 118.0 11.8 146 28-190 6-168 (182)
336 2aty_A Complement receptor chi 99.7 5E-16 1.7E-20 131.4 13.6 167 119-289 180-360 (376)
337 3d9a_H Heavy chain of hyhel10 99.7 1.3E-15 4.3E-20 118.3 14.4 162 23-189 2-200 (210)
338 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 1.8E-15 6.1E-20 121.2 15.6 157 28-189 10-232 (256)
339 1dee_B IGM RF 2A2; FAB-IBP com 99.7 1.1E-14 3.7E-19 114.1 19.4 164 23-190 2-214 (223)
340 3eow_R Poliovirus receptor; im 99.7 2.5E-16 8.5E-21 123.3 9.8 172 27-207 5-212 (221)
341 1oga_E TRBC1, T-cell receptor 99.7 6.3E-15 2.2E-19 117.7 18.1 174 113-291 9-218 (252)
342 2wbj_D OB TCR; transmembrane, 99.7 5.7E-16 1.9E-20 125.8 12.1 166 22-190 24-243 (279)
343 3esu_F Antibody 14B7* light ch 99.7 3.4E-15 1.2E-19 119.1 16.4 157 28-188 11-231 (250)
344 3n9g_H FAB fragment of MAB CR4 99.7 2.7E-15 9.3E-20 118.1 15.6 184 114-306 7-225 (230)
345 1moe_A Anti-CEA MAB T84.66; an 99.7 8.2E-15 2.8E-19 116.1 17.7 160 27-188 7-219 (240)
346 1dn0_B IGM-kappa cold agglutin 99.7 1.3E-14 4.4E-19 114.4 18.6 164 23-190 2-214 (232)
347 1pz5_B Heavy chain of FAB (SYA 99.6 5.8E-15 2E-19 115.4 15.9 163 23-190 2-208 (220)
348 3mjg_X Beta-type platelet-deri 99.6 1.6E-15 5.6E-20 123.6 12.9 157 31-207 105-280 (289)
349 2edj_A Roundabout homolog 2; K 99.6 1.2E-15 4.2E-20 103.5 10.1 92 206-308 8-100 (100)
350 1mju_H Immunoglobulin MS6-12; 99.6 1.9E-15 6.4E-20 118.8 12.5 162 23-189 2-203 (227)
351 4dzb_B Vbeta2 (MAIT T cell rec 99.6 1.5E-14 5.1E-19 115.1 17.8 160 27-190 7-218 (246)
352 3sob_H Antibody heavy chain, l 99.6 4.8E-15 1.6E-19 118.7 15.0 166 18-189 20-237 (256)
353 3ux9_B SCFV antibody; five hel 99.6 4.6E-15 1.6E-19 118.8 14.9 162 26-189 7-235 (256)
354 2fbj_H IGA-kappa J539 FAB (hea 99.6 2.4E-14 8E-19 111.9 18.5 163 23-189 2-207 (220)
355 3kvq_A Vascular endothelial gr 99.6 6.8E-16 2.3E-20 106.4 8.4 101 199-310 3-104 (108)
356 2znx_A SCFV; fluorotryptohpan, 99.6 1.3E-14 4.5E-19 115.1 17.1 160 26-189 6-222 (242)
357 1u2h_A APEG-1, aortic preferen 99.6 3.3E-15 1.1E-19 101.2 11.3 94 206-307 5-99 (99)
358 4ei6_B Vbeta16 XV19 type II na 99.6 2.1E-14 7.2E-19 114.1 17.8 162 26-190 7-217 (245)
359 1ow0_A IG alpha-1 chain C regi 99.6 4.7E-17 1.6E-21 126.8 1.9 171 114-290 11-199 (214)
360 1ypz_E T cell receptor delta, 99.6 1.2E-14 4.1E-19 112.4 15.4 165 113-291 7-198 (207)
361 3qib_D 2B4 beta chain; IG doma 99.6 1.2E-14 4E-19 117.4 15.9 161 27-190 33-242 (270)
362 3omz_A Human vdelta1 gamma del 99.6 1.3E-14 4.3E-19 116.5 15.9 158 27-186 8-229 (259)
363 1wwb_X Protein (brain derived 99.6 1.8E-15 6.2E-20 103.1 9.3 88 218-310 14-102 (103)
364 2rgs_A I, IG gamma-2B heavy ch 99.6 9.8E-16 3.4E-20 119.6 9.1 150 33-189 23-202 (218)
365 2cqv_A MLCK, myosin light chai 99.6 3.5E-15 1.2E-19 103.9 10.9 99 206-313 7-106 (114)
366 1l6x_A Immunoglobulin gamma-1 99.6 6E-15 2E-19 114.2 13.3 148 34-189 16-194 (207)
367 2kdg_A Myotilin; immonoglobuli 99.6 3.1E-15 1.1E-19 101.5 10.4 94 206-307 5-99 (100)
368 3sob_H Antibody heavy chain, l 99.6 7.4E-15 2.5E-19 117.6 14.2 181 116-305 32-250 (256)
369 3q5y_A TCR N15 beta; IG, T cel 99.6 4.3E-14 1.5E-18 112.0 18.5 161 27-190 8-211 (240)
370 1op3_H FAB 2G12, heavy chain; 99.6 1.1E-14 3.7E-19 114.3 14.7 162 23-189 2-211 (225)
371 1g1c_A Immunoglobulin-like dom 99.6 5.7E-15 2E-19 100.0 11.3 88 211-306 11-98 (99)
372 2kkq_A Myotilin; unknown funct 99.6 3.2E-15 1.1E-19 104.2 10.3 94 211-311 21-114 (116)
373 3nl4_H Antigen binding fragmen 99.6 3E-15 1E-19 116.6 11.2 160 24-189 2-200 (215)
374 3nfj_J T cell receptor beta ch 99.6 5.6E-14 1.9E-18 111.7 18.7 160 27-190 7-217 (245)
375 2e7c_A Myosin-binding protein 99.6 4.6E-15 1.6E-19 103.9 11.0 95 204-308 19-117 (118)
376 1svz_A Immunoglobulin;, single 99.6 2.4E-14 8.2E-19 114.0 16.3 158 27-188 7-227 (247)
377 3qp3_A Titin; I-SET IG-like, s 99.6 4.4E-15 1.5E-19 101.3 10.1 95 205-308 7-102 (103)
378 3fku_X Neutralizing antibody F 99.6 2.3E-14 7.8E-19 116.3 16.0 163 24-189 3-233 (280)
379 2gjj_A A21 single-chain antibo 99.6 1.4E-13 5E-18 110.5 20.4 163 23-189 6-239 (264)
380 2v5y_A Receptor-type tyrosine- 99.6 2E-13 6.8E-18 125.6 23.1 233 35-291 90-343 (731)
381 1wit_A Twitchin 18TH IGSF modu 99.6 3.6E-15 1.2E-19 99.7 8.6 83 212-305 9-93 (93)
382 3pl6_D MBP peptide / T-cell re 99.6 3.9E-14 1.3E-18 114.2 16.2 160 27-190 32-239 (268)
383 3iu4_H CHP3 FAB heavy chain; a 99.6 4.8E-15 1.6E-19 119.0 10.7 171 116-291 9-213 (263)
384 3bae_H WO2 IGG2A FAB fragment 99.6 2.7E-14 9.3E-19 112.3 14.0 162 23-189 2-212 (228)
385 1i1c_A IGG2A, IG gamma-2A chai 99.6 3.3E-15 1.1E-19 118.2 8.7 155 33-189 29-208 (239)
386 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 7E-14 2.4E-18 112.7 16.6 164 21-188 14-253 (268)
387 2yr3_A Myosin light chain kina 99.6 3.3E-15 1.1E-19 101.1 7.5 90 204-305 9-99 (99)
388 3mlr_H Human monoclonal anti-H 99.6 1.4E-14 4.7E-19 113.8 12.1 173 114-291 7-215 (226)
389 2eo9_A Roundabout homolog 1; b 99.6 3.1E-15 1.1E-19 104.8 7.5 94 206-310 8-102 (118)
390 3mtr_A N-CAM-1, NCAM-1, neural 99.6 1E-13 3.6E-18 107.8 17.0 166 23-196 20-202 (215)
391 2dm2_A Palladin; beta-sandwich 99.6 6.3E-15 2.2E-19 101.8 8.7 99 206-311 8-107 (110)
392 2cry_A KIN of IRRE-like protei 99.6 1.6E-16 5.4E-21 112.1 0.2 111 196-310 4-117 (122)
393 1he7_A High affinity nerve gro 99.6 2E-14 6.9E-19 100.1 10.7 89 219-311 14-104 (126)
394 2w59_A IGY FCU3-4; immunoglobu 99.6 2.1E-14 7.2E-19 113.1 12.1 158 24-189 16-214 (231)
395 3liz_H 4C3 monoclonal antibody 99.6 3.8E-14 1.3E-18 113.2 13.6 163 23-189 2-206 (253)
396 1iam_A ICAM-1, CD54, intercell 99.6 2.2E-13 7.6E-18 101.8 16.8 158 111-291 3-167 (185)
397 3knb_B Obscurin-like protein 1 99.6 2.1E-14 7.2E-19 98.3 10.4 92 106-207 12-107 (107)
398 1gxe_A Myosin binding protein 99.6 4.7E-15 1.6E-19 106.3 7.4 87 212-306 25-139 (139)
399 3irg_B Obscurin-like protein 1 99.6 2.3E-14 7.8E-19 98.5 10.6 94 206-308 13-107 (107)
400 3to4_D NKT vbeta2 (mouse varia 99.6 2E-13 6.7E-18 109.1 17.0 160 27-189 7-216 (253)
401 3irg_A Titin; IG-like, titin, 99.6 3.8E-14 1.3E-18 96.0 10.8 88 211-306 11-99 (100)
402 3u1s_H FAB PGT145 heavy chain; 99.6 1E-13 3.4E-18 111.6 15.0 165 19-189 21-251 (267)
403 1fhg_A Telokin; immunoglobulin 99.6 3.6E-14 1.2E-18 104.3 11.0 105 200-312 35-140 (154)
404 1c5d_H Monoclonal antibody aga 99.6 1.7E-13 5.9E-18 106.6 15.5 160 24-189 3-202 (215)
405 3puc_A Titin; I-SET IG-like do 99.6 5.3E-14 1.8E-18 95.1 10.9 92 206-306 6-98 (99)
406 2dm3_A KIAA0992 protein, palla 99.5 6.8E-15 2.3E-19 101.7 6.5 98 206-311 9-107 (110)
407 1ypz_F T-cell receptor gamma c 99.5 3.8E-13 1.3E-17 105.8 17.3 172 27-207 7-227 (230)
408 1wwc_A Protein (NT-3 growth fa 99.5 1.8E-14 6E-19 100.9 8.5 105 200-311 2-106 (118)
409 2bk8_A Connectin, M1, titin he 99.5 8E-14 2.7E-18 93.8 11.4 88 211-307 7-95 (97)
410 3qhz_H Human monoclonal antibo 99.5 1E-13 3.5E-18 109.3 13.3 163 23-189 2-215 (232)
411 3bn9_D E2 FAB heavy chain; ant 99.5 3E-14 1E-18 113.8 10.2 162 23-189 2-216 (257)
412 2xqy_G A13-D6.3 monoclonal ant 99.5 1.3E-13 4.5E-18 110.5 13.9 165 21-189 6-211 (261)
413 3tv3_H PGT128 heavy chain, IG 99.5 1.2E-13 4.1E-18 109.3 13.4 163 23-189 2-223 (239)
414 2lu7_A Obscurin-like protein 1 99.5 5.4E-14 1.9E-18 91.4 8.6 79 214-306 5-83 (84)
415 1hxm_B Gamma-delta T-cell rece 99.5 9.1E-13 3.1E-17 104.5 17.3 160 27-191 7-217 (242)
416 3n9g_H FAB fragment of MAB CR4 99.5 4.6E-13 1.6E-17 105.3 15.4 161 23-189 2-211 (230)
417 1bec_A 14.3.D T cell antigen r 99.5 4E-13 1.4E-17 106.3 15.0 161 26-189 4-209 (238)
418 2ckn_A Basic fibroblast growth 99.5 5.5E-14 1.9E-18 94.2 8.5 80 211-304 15-94 (95)
419 1iam_A ICAM-1, CD54, intercell 99.5 4E-13 1.4E-17 100.5 13.9 148 28-189 6-164 (185)
420 4acp_A IG gamma-1 chain C regi 99.5 1.2E-13 4.2E-18 108.9 11.8 164 23-189 25-215 (240)
421 1hxm_A Gamma-delta T-cell rece 99.5 8.8E-13 3E-17 103.3 16.5 168 113-291 7-199 (229)
422 1oga_E TRBC1, T-cell receptor 99.5 2.6E-13 8.9E-18 108.3 13.3 160 28-190 10-216 (252)
423 3u1s_H FAB PGT145 heavy chain; 99.5 1.3E-13 4.4E-18 111.0 11.1 171 116-291 32-254 (267)
424 3iu4_H CHP3 FAB heavy chain; a 99.5 7.1E-13 2.4E-17 106.3 15.4 160 24-189 3-210 (263)
425 2cr3_A Basic fibroblast growth 99.5 4.7E-14 1.6E-18 95.3 7.1 84 213-310 11-94 (99)
426 1nct_A Titin; cell adhesion, g 99.5 4.4E-14 1.5E-18 96.7 7.0 86 211-305 20-105 (106)
427 3knb_A Titin; IG-like, titin, 99.5 2.3E-13 7.8E-18 91.9 10.4 90 107-204 5-98 (100)
428 2aty_A Complement receptor chi 99.5 1.4E-13 4.8E-18 116.4 11.5 159 28-189 174-359 (376)
429 3f8u_B Tapasin; endoplasmic re 99.5 1.3E-12 4.6E-17 108.6 16.9 186 113-302 164-400 (401)
430 2yuz_A Myosin-binding protein 99.5 1.5E-13 5.3E-18 92.8 9.4 86 211-309 13-98 (100)
431 3cx2_A Myosin-binding protein 99.5 2.7E-13 9.4E-18 93.1 10.7 91 211-305 10-107 (108)
432 2v5y_A Receptor-type tyrosine- 99.5 3E-13 1E-17 124.4 14.2 167 122-310 91-264 (731)
433 3bfo_A Mucosa-associated lymph 99.5 1.4E-13 4.9E-18 91.4 8.6 77 213-306 11-87 (91)
434 3caf_A Fibroblast growth facto 99.5 1.6E-13 5.4E-18 93.0 9.0 81 214-304 17-99 (100)
435 3u2s_H PG9 heavy chain; greek 99.5 1.1E-12 3.6E-17 104.4 14.7 162 24-189 2-224 (248)
436 3mlr_H Human monoclonal anti-H 99.5 1.9E-12 6.4E-17 101.5 14.9 161 23-189 2-212 (226)
437 4hwu_A Fibroblast growth facto 99.5 3.3E-13 1.1E-17 90.4 9.1 84 212-310 8-91 (95)
438 2ens_A Advanced glycosylation 99.5 6E-14 2.1E-18 94.3 5.4 79 212-306 17-95 (96)
439 1mq8_A ICAM-1, intercellular a 99.5 8.8E-13 3E-17 106.5 13.1 175 112-310 4-190 (291)
440 2dav_A SLOW MYBP-C, myosin-bin 99.5 2.1E-13 7.3E-18 95.0 8.0 92 211-306 13-111 (126)
441 3bn3_B ICAM-5, intercellular a 99.5 2.7E-12 9.1E-17 96.7 14.3 163 111-291 6-175 (196)
442 2edn_A Myosin-binding protein 99.4 2.3E-13 7.8E-18 93.8 7.8 93 211-307 18-117 (118)
443 3s35_X Vascular endothelial gr 99.4 6.7E-13 2.3E-17 93.4 10.4 93 214-311 17-115 (122)
444 1waa_A Titin; metal binding pr 99.4 1E-12 3.4E-17 87.4 10.5 73 211-289 11-83 (93)
445 3o3u_N Maltose-binding peripla 99.4 1.4E-12 4.9E-17 116.8 14.9 150 29-190 374-564 (581)
446 2cr6_A KIAA1556 protein, obscu 99.4 2.1E-13 7.2E-18 94.9 7.2 103 199-313 5-109 (115)
447 3m45_A Cell adhesion molecule 99.4 1.1E-12 3.6E-17 90.1 10.1 93 208-308 9-108 (108)
448 1gl4_B Basement membrane-speci 99.4 8.1E-13 2.8E-17 89.0 9.1 79 213-305 18-97 (98)
449 1ypz_E T cell receptor delta, 99.4 4.1E-12 1.4E-16 98.1 14.2 155 27-189 7-195 (207)
450 2lvc_A Obscurin-like protein 1 99.4 3.5E-13 1.2E-17 89.1 6.9 68 216-289 17-84 (91)
451 1x44_A Myosin-binding protein 99.4 1.1E-12 3.8E-17 89.3 9.6 87 211-310 13-100 (103)
452 1ow0_A IG alpha-1 chain C regi 99.4 1.9E-13 6.6E-18 106.2 6.5 157 23-189 6-197 (214)
453 2cqv_A MLCK, myosin light chai 99.4 2E-12 6.8E-17 89.7 10.6 91 107-207 7-101 (114)
454 2yuz_A Myosin-binding protein 99.4 1.5E-12 5.3E-17 87.8 9.1 85 109-207 9-97 (100)
455 2v9t_A Roundabout homolog 1; s 99.4 4.8E-13 1.6E-17 93.4 6.6 96 205-305 8-108 (117)
456 2edh_A Obscurin; structural ge 99.4 3E-12 1E-16 88.7 10.5 102 195-311 7-110 (113)
457 3rbg_A Cytotoxic and regulator 99.4 2E-12 6.9E-17 91.1 9.8 91 212-310 8-105 (124)
458 2lu7_A Obscurin-like protein 1 99.4 1.3E-12 4.6E-17 84.8 8.0 74 117-205 6-83 (84)
459 1g1c_A Immunoglobulin-like dom 99.4 4E-12 1.4E-16 85.7 10.6 88 107-204 5-97 (99)
460 3irg_B Obscurin-like protein 1 99.4 4.5E-12 1.5E-16 86.8 10.4 92 106-207 12-107 (107)
461 3qp3_A Titin; I-SET IG-like, s 99.4 5.7E-12 1.9E-16 85.7 10.6 88 107-204 8-99 (103)
462 2edj_A Roundabout homolog 2; K 99.4 4.6E-12 1.6E-16 85.6 10.0 91 107-206 8-99 (100)
463 2edf_A Obscurin; beta-sandwich 99.4 1.8E-12 6.2E-17 88.2 8.0 87 211-311 14-100 (103)
464 2e6p_A Obscurin-like protein 1 99.4 3.1E-12 1.1E-16 87.2 9.1 82 215-310 20-101 (104)
465 2kdg_A Myotilin; immonoglobuli 99.4 4.7E-12 1.6E-16 85.6 9.7 91 107-205 5-98 (100)
466 1wit_A Twitchin 18TH IGSF modu 99.4 2.5E-12 8.5E-17 85.7 7.9 86 108-203 3-92 (93)
467 1waa_A Titin; metal binding pr 99.3 7.9E-12 2.7E-16 83.0 9.9 81 109-204 7-91 (93)
468 3bn3_B ICAM-5, intercellular a 99.3 2.4E-11 8.3E-16 91.5 13.7 150 28-189 9-172 (196)
469 2edk_A Myosin-binding protein 99.3 6.9E-13 2.4E-17 89.9 4.7 73 211-288 14-89 (101)
470 2yr3_A Myosin light chain kina 99.3 5.7E-12 1.9E-16 85.0 9.1 88 106-203 10-98 (99)
471 2cpc_A KIAA0657 protein; immun 99.3 1.3E-11 4.6E-16 85.3 11.2 84 215-312 23-106 (113)
472 2yuv_A Myosin-binding protein 99.3 1.6E-11 5.6E-16 82.9 11.3 81 215-309 18-98 (100)
473 3puc_A Titin; I-SET IG-like do 99.3 1.2E-11 4.2E-16 83.3 10.6 87 107-203 6-96 (99)
474 1hxm_A Gamma-delta T-cell rece 99.3 7.4E-11 2.5E-15 92.4 16.4 156 26-189 6-196 (229)
475 2kkq_A Myotilin; unknown funct 99.3 7.5E-12 2.6E-16 87.0 9.6 94 106-208 14-112 (116)
476 1pd6_A Cardiac MYBP-C;, myosin 99.3 7.2E-12 2.5E-16 85.2 9.2 71 214-289 25-95 (104)
477 1u2h_A APEG-1, aortic preferen 99.3 1.5E-11 5E-16 82.9 10.8 89 107-204 5-97 (99)
478 2dav_A SLOW MYBP-C, myosin-bin 99.3 7.8E-12 2.7E-16 87.1 9.4 91 108-205 8-111 (126)
479 4f9p_D 103.2 anti-BTN3A1 antib 99.3 3.4E-10 1.2E-14 86.3 18.9 167 115-289 8-230 (254)
480 2eny_A Obscurin; beta-sandwich 99.3 2.8E-12 9.7E-17 87.2 6.9 87 211-310 14-101 (104)
481 3so5_A LIG-3, leucine-rich rep 99.3 5.4E-12 1.9E-16 87.1 8.4 97 205-304 9-111 (112)
482 3bfo_A Mucosa-associated lymph 99.3 1.1E-11 3.9E-16 82.0 9.3 81 109-203 5-85 (91)
483 2dlt_A Myosin binding protein 99.3 3.7E-12 1.3E-16 87.1 6.7 73 211-289 14-86 (106)
484 3kvq_A Vascular endothelial gr 99.3 6.4E-12 2.2E-16 86.2 7.7 89 109-207 12-102 (108)
485 3qr2_A Basigin; CD147, EMMPRIN 99.3 3.8E-12 1.3E-16 91.4 6.8 86 205-291 20-115 (137)
486 2e7b_A Obscurin; IG-like domai 99.3 8.2E-12 2.8E-16 84.9 8.2 87 211-311 14-100 (103)
487 2eo9_A Roundabout homolog 1; b 99.3 8.2E-12 2.8E-16 87.2 8.3 92 107-207 8-100 (118)
488 1zxq_A ICAM-2, intercellular a 99.3 2.6E-10 9E-15 85.1 16.6 160 110-289 5-172 (192)
489 1nct_A Titin; cell adhesion, g 99.3 4.8E-12 1.7E-16 86.5 6.8 88 106-203 13-104 (106)
490 2ens_A Advanced glycosylation 99.3 2.6E-12 8.9E-17 86.1 5.3 83 108-203 11-93 (96)
491 2k1m_A Myosin-binding protein 99.3 2.7E-11 9.3E-16 80.9 10.3 80 212-305 15-94 (95)
492 2bk8_A Connectin, M1, titin he 99.3 3.6E-11 1.2E-15 80.7 10.9 81 113-203 7-92 (97)
493 4f9l_D 20.1 anti-BTN3A1 antibo 99.3 2E-10 7E-15 88.1 16.0 168 113-287 7-231 (259)
494 2xot_A Amphoterin-induced prot 99.3 5.1E-12 1.7E-16 106.2 8.0 108 114-238 253-360 (361)
495 2lvc_A Obscurin-like protein 1 99.3 6.3E-12 2.1E-16 83.0 6.8 62 119-189 18-83 (91)
496 2eny_A Obscurin; beta-sandwich 99.3 5E-12 1.7E-16 86.0 6.5 83 113-208 14-100 (104)
497 2dku_A KIAA1556 protein; beta- 99.3 2.2E-11 7.4E-16 82.7 9.7 86 211-310 14-99 (103)
498 1fhg_A Telokin; immunoglobulin 99.3 2.4E-11 8.4E-16 89.0 10.7 95 106-210 40-139 (154)
499 2dm3_A KIAA0992 protein, palla 99.3 6.2E-12 2.1E-16 86.6 7.0 92 106-207 8-104 (110)
500 2e6q_A Obscurin-like protein 1 99.3 2.5E-11 8.5E-16 83.0 9.6 87 211-310 14-109 (112)
No 1
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=2.4e-35 Score=241.18 Aligned_cols=259 Identities=17% Similarity=0.345 Sum_probs=195.9
Q ss_pred eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235 24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF 99 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~ 99 (323)
....+.++.+.+|++++|.|.+. +.+.++|+++|..+... .. +..........|.|.+++. +|.|+|.+.+
T Consensus 8 ~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GN--YKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp EEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSS---SS--EEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCC---Cc--EEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 33456678899999999999954 56799999999877653 11 2222334556777777654 9999999988
Q ss_pred cCCccceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ecee
Q psy15235 100 IPRMNAITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKD 166 (323)
Q Consensus 100 ~~~~~~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~ 166 (323)
..+.......+.+ .+....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. ..++. ....
T Consensus 83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~ 155 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP---EIKVLWYKDETEIQE----SSKFRMSFVESVA 155 (284)
T ss_dssp TTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSS---CCEEEEEETTEECCC----SSSEEEEEETTEE
T ss_pred CCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeC---CCEEEEEECCEECcC----CCcEEEEEcCCEE
Confidence 7665433333322 12233477899999999999887 789999999998876 33332 4567
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~ 245 (323)
.|.|.+++.+|+|.|+|.+ .+.. +.....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..
T Consensus 156 ~L~i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~ 232 (284)
T 2rik_A 156 VLEMYNLSVEDSGDYTCEA-HNAA--GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE 232 (284)
T ss_dssp EEEECSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEE
T ss_pred EEEECCCCcccCEEEEEEE-EcCC--CceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence 8999999999999999999 7763 345667788888888766 34456788999999999999999999999999998
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+... .++.+.. .+ ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|++
T Consensus 233 ~~~~-~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~ 284 (284)
T 2rik_A 233 LRSG-KKYKIMS--EN--FLTSIHILNVDSADIGEYQCKASNDVGS----YTCVGSITLKA 284 (284)
T ss_dssp ECBT-TTEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEECC
T ss_pred CcCC-CCEEEEE--cC--CEEEEEEcCCCcccCEEEEEEEEeCCCc----eeEEEEEEEcC
Confidence 8644 3333331 01 2478999999999999999999999966 77888888763
No 2
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=1.8e-34 Score=236.74 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=191.4
Q ss_pred EEeeceEEecCCcEEEEEEecc---CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235 26 TYFGDTEIMEGAPINISCILTI---FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF 99 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~~---~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~ 99 (323)
..+.+..+.+|++++|.|.+.+ .+.+.|++ +|..+... ...............|.|.+++. +|.|+|.+.+
T Consensus 7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 83 (291)
T 1qz1_A 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83 (291)
T ss_dssp EESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSS---CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccC---CceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEc
Confidence 3566788999999999999543 47999999 77666543 11222222334566777777654 9999999998
Q ss_pred cCCcc-ceeeee--------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235 100 IPRMN-AITGNY--------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT 169 (323)
Q Consensus 100 ~~~~~-~~~~~~--------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~ 169 (323)
..+.. .....+ ...+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.. ....++. .....|.
T Consensus 84 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~ 158 (291)
T 1qz1_A 84 EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVIL--KKDVRFIVLSNNYLQ 158 (291)
T ss_dssp TTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEETTSCSST--TCCTTEEECTTSCEE
T ss_pred CCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCC---CCEEEEEECCEEccc--CCCceEEEccCCcEE
Confidence 76432 111122 2244455578899999999999987 679999999987754 1123333 4456899
Q ss_pred EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee---ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeee
Q psy15235 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~ 246 (323)
|.++..+|+|.|+|.+ .+..+.......+.+.|..+|.+... ....+.+|+.+.|.|.+.|+|.|.+.|++++..+
T Consensus 159 i~~~~~~d~G~Y~C~a-~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~ 237 (291)
T 1qz1_A 159 IRGIKKTDEGTYRCEG-RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI 237 (291)
T ss_dssp ETTCCGGGCEEEEEEE-EEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred EccCccccCeEEEEEE-EecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEEC
Confidence 9999999999999999 65533333445667777777766532 2446778999999999999999999999999987
Q ss_pred eccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 247 FRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 247 ~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.... .++.... ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|.+
T Consensus 238 ~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~ 290 (291)
T 1qz1_A 238 ENEEEDDEKHIFSD------DSSELTIRNVDKNDEAEYVCIAENKAGE----QDASIHLKVFA 290 (291)
T ss_dssp CCC--CCSSEEECT------TSCEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred cCCCCCCcceEEcC------CCcEEEEEecChhcCEEEEEEEEeCCCc----eEEEEEEEEEc
Confidence 6543 2333331 3578999999999999999999999966 78888888865
No 3
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.6e-33 Score=250.58 Aligned_cols=259 Identities=17% Similarity=0.366 Sum_probs=196.1
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM 103 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~ 103 (323)
+....+.+|++++|.|.+ .|.+.++|+|+|..+... .. +..........|.|.++.. +|.|+|.+.|..+.
T Consensus 204 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~---~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 278 (570)
T 3b43_A 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GN--YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278 (570)
T ss_dssp CCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTT---SS--EEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEE
T ss_pred CceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCC---Cc--EEEEEECCEEEEEEcccCcccCEEEEEEEECCCCc
Confidence 345668899999999994 466799999999877543 11 1222234455677777654 99999999988776
Q ss_pred cceeeeeee--CC-------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEE
Q psy15235 104 NAITGNYDI--EP-------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITI 170 (323)
Q Consensus 104 ~~~~~~~~~--~~-------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i 170 (323)
......+.+ .| ....+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|
T Consensus 279 ~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P---~p~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~i 351 (570)
T 3b43_A 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP---EIKVLWYKDETEIQE----SSKFRMSFVESVAVLEM 351 (570)
T ss_dssp EEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSS---SCEEEEEETTEECCC----SSSEEEEEETTEEEEEE
T ss_pred EEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCC---CCEEEEeECCEECCC----CCcEEEEEECCEEEEEE
Confidence 544333333 11 122367899999999999988 789999999998876 33332 45578999
Q ss_pred eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 249 (323)
.+++.+|+|.|+|.| .|..+ .......|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus 352 ~~v~~~D~G~Y~C~a-~N~~g--~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~ 428 (570)
T 3b43_A 352 YNLSVEDSGDYTCEA-HNAAG--SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 428 (570)
T ss_dssp ESCCGGGCEEEEEEE-EBTTB--CCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSS
T ss_pred CCCCcccCEEEEEEE-EeCCC--EEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCC
Confidence 999999999999999 77743 45667788888888766 444566788999999999999999999999999988643
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.++.+.. .+ ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 429 -~~~~~~~--~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~~~l~v~~~P~~ 480 (570)
T 3b43_A 429 -KKYKIMS--EN--FLTSIHILNVDSADIGEYQCKASNDVGS----DTCVGSITLKAPPRF 480 (570)
T ss_dssp -SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEECCCCEE
T ss_pred -CCEEEEE--cC--CEEEEEECCCChhhCEEEEEEEEECCCe----EEEEEEEEeccCCcc
Confidence 3444331 01 2468999999999999999999999965 777888888776653
No 4
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.1e-33 Score=251.26 Aligned_cols=252 Identities=18% Similarity=0.300 Sum_probs=193.1
Q ss_pred eEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccce
Q psy15235 31 TEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~~ 106 (323)
..+.+|+.+.|.|.+ .|.+.+.|+|+|..+.... . +..........|.|.+++ |+|.|+|.+.|..+....
T Consensus 301 ~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~---~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~ 375 (570)
T 3b43_A 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---K--FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 375 (570)
T ss_dssp CCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSS---S--EEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE
T ss_pred cEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCC---c--EEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE
Confidence 457899999999994 5678999999998876641 1 122233445567777665 499999999998776543
Q ss_pred eeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeee
Q psy15235 107 TGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTT 174 (323)
Q Consensus 107 ~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~ 174 (323)
...+.+ .+....+.+|+.+.|.|.+.+.| .+.|.|++++..+.. +.++. .....|.|.++.
T Consensus 376 ~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~v~ 448 (570)
T 3b43_A 376 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP---PFQVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVD 448 (570)
T ss_dssp EEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSS---SCCCEEEETTEECCS----SSSEEEEEETTEEEEEECSCC
T ss_pred EEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCC---CCEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCC
Confidence 333332 34444567899999999999988 789999999998876 44443 234689999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~ 253 (323)
.+|+|.|+|.| .|..+ .......|.|..+|.+. .+....+..|+.+.|.|.+.|.|++.+.|++++..+.....++
T Consensus 449 ~~D~G~Y~C~A-~N~~G--~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~ 525 (570)
T 3b43_A 449 SADIGEYQCKA-SNDVG--SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNI 525 (570)
T ss_dssp GGGCEEEEEEE-ECSSC--EEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTE
T ss_pred hhhCEEEEEEE-EECCC--eEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeE
Confidence 99999999999 78744 34556778888888765 3445667889999999999999999999999987665444444
Q ss_pred eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 254 ~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.+.. .+ ...+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus 526 ~~~~--~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~a~L~V~ 569 (570)
T 3b43_A 526 WISY--SE--NIATLQFSRAEPANAGKYTCQIKNEAGT----QECFATLSVL 569 (570)
T ss_dssp EECC--CS--SEEEEEESSCCTTCCEEEEEEEECSSCE----EEEEEEECCB
T ss_pred EEEE--CC--CEEEEEECcCCHHHCEEEEEEEEECCcE----EEEEEEEEEe
Confidence 4431 11 3578999999999999999999999966 8888888775
No 5
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=231.71 Aligned_cols=264 Identities=21% Similarity=0.344 Sum_probs=174.5
Q ss_pred EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeec
Q psy15235 25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLF 99 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~ 99 (323)
+..+.+..+.+|++++|.|.+ .|.+.++|+++|..+... +.............|.|.++ .|+|.|+|.+.+
T Consensus 10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~----~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n 85 (304)
T 2yd9_A 10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85 (304)
T ss_dssp EECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT----TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEEC
T ss_pred eecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC----ceEEEEecCCCceEEEEecccccCCCeEEEEEEEC
Confidence 345677889999999999995 466799999999887543 22211112223366777766 459999999998
Q ss_pred cCCcccee---------------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e
Q psy15235 100 IPRMNAIT---------------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q 163 (323)
Q Consensus 100 ~~~~~~~~---------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~ 163 (323)
..+..... +.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++..+..... ..++. .
T Consensus 86 ~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p---~~~v~W~k~~~~~~~~~~-~~~~~~~ 161 (304)
T 2yd9_A 86 SVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPVDPSAS-NGRIKQL 161 (304)
T ss_dssp SSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSS---CCEEEEEETTEECCGGGG-TTSEEEC
T ss_pred CCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCC---CCeEEEEECCEECcCCCC-cceEEeC
Confidence 76653222 2222244445577899999999999988 689999999988765211 12332 4
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEW 239 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W 239 (323)
....|.|.+++.+|+|.|+|.+ .|..+... .....+.|. .+|.+. .+....+.+|+.+.|.|.+.|+|.|.+.|
T Consensus 162 ~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~-~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W 239 (304)
T 2yd9_A 162 RSGALQIESSEETDQGKYECVA-TNSAGVRY-SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239 (304)
T ss_dssp TTSCEEECSCCGGGCEEEEEEE-EETTEEEE-CCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEE
T ss_pred CCeEEEEccCCcccCEEEEEEE-EeCCCCEE-eccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEE
Confidence 4568999999999999999999 66633221 112344443 356555 33455688999999999999999999999
Q ss_pred EECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
++++..+..... .. .....|.|.++ +|+|.|+|.|.|..|. ....+.|.|.+.+....+
T Consensus 240 ~~~~~~l~~~~~-~~--------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~~~~ 298 (304)
T 2yd9_A 240 MQGAEDLTPEDD-MP--------VGRNVLELTDV--KDSANYTCVAMSSLGV----IEAVAQITVKSLPKAGTK 298 (304)
T ss_dssp EETTEECSCSSS-CC--------BSEEEEEECSC--CSCEEEEEEEEETTEE----EEEEEEEC----------
T ss_pred EECCEECCCccc-cc--------CCcEEEEEccc--ccCEEEEEEEEeCCCc----EEEEEEEEEecCcccccc
Confidence 999988754321 11 12445666665 6899999999999966 888999999888766543
No 6
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=231.82 Aligned_cols=262 Identities=18% Similarity=0.283 Sum_probs=185.1
Q ss_pred EeeceEEecCCcEEEEEEecc-CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCILTI-FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~ 102 (323)
.+.++.+.+|++++|.|.+.+ ++.+.|++ +|..+... ..+..........|.|.+++. +|.|+|.+.+..+
T Consensus 10 ~~~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g 84 (291)
T 2wim_A 10 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 84 (291)
T ss_dssp SCSEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCCCB-----TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred eccceEecCCCcEEEEEEEeCCCCceEEECCCCcCccCC-----CcEEEecCCCEEEEEEccCCcccCEEEEEEEecccC
Confidence 346678999999999999543 34899999 66655443 112223334456677776654 9999999988765
Q ss_pred ccc-eeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEee
Q psy15235 103 MNA-ITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRK 172 (323)
Q Consensus 103 ~~~-~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~ 172 (323)
... ....+.+ .+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.. ....++. .....|.|.+
T Consensus 85 ~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~ 159 (291)
T 2wim_A 85 QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTT--ISDNRFAMLANNNLQILN 159 (291)
T ss_dssp CEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSS---CCEEEEECC----CB--CCCSSEEECTTSCEEETT
T ss_pred ceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCC---CCEEEEEECCccccc--cCCceEEEccCCCEEEEe
Confidence 531 1112221 33445578899999999999887 689999999887653 1133443 4456799999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 249 (323)
+..+|+|.|+|.+ .+..+.......+.+.+..+|.+..+. ...+.+|+.+.|.|.+.|+|.+.+.|++++..+...
T Consensus 160 v~~~d~G~Y~C~~-~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~ 238 (291)
T 2wim_A 160 INKSDEGIYRCEG-RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238 (291)
T ss_dssp CCGGGCEEEEEEE-EETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred cchhhCEEEEEEE-EECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence 9999999999999 665433334455677777777665333 345678999999999999999999999999987644
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.++.+.. ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|.+.+..
T Consensus 239 -~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~~~~ 288 (291)
T 2wim_A 239 -EKYILKG------SNTELTVRNIINSDGGPYVCRATNKAGE----DEKQAFLQVFVQHHH 288 (291)
T ss_dssp -TTEEECS------TTCEEEEESCCSTTCEEEEEEEEETTEE----EEEEEEEEC------
T ss_pred -ccEEEcC------CccEEEEeeCCcccCEEEEEEEEECCCc----eeeeEEEEEEEeccc
Confidence 3333321 3578999999999999999999999966 888999988877654
No 7
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=5.3e-33 Score=236.90 Aligned_cols=249 Identities=19% Similarity=0.280 Sum_probs=183.1
Q ss_pred ceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccce
Q psy15235 30 DTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~ 106 (323)
.+.+.+|+.+.|.|.. .+.+.+.|++++..+... ...+ .....+.+.|......|+|.|+|.+.+..+....
T Consensus 111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~ 185 (384)
T 3kld_A 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD----NRRF-VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185 (384)
T ss_dssp CEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCS----SSEE-ECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEE
T ss_pred ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEee----ccEE-EEcCCCcEEEeecCHHHCceEEEEEeccccccee
Confidence 4678899999999973 356799999998765432 1111 1222344444444445599999999986543211
Q ss_pred ------------------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEEecee
Q psy15235 107 ------------------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLTQSKD 166 (323)
Q Consensus 107 ------------------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~ 166 (323)
.+.+.+ .+....+.+|+.+.|.|.+.+.| .+.+.|+++ +..+.. ..+......
T Consensus 186 ~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~~~~~~~~----~~~~~~~~~ 258 (384)
T 3kld_A 186 LGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP---VPTILWRRADGKPIAR----KARRHKSNG 258 (384)
T ss_dssp ECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES---CCEEEEEETTCCCCCT----TCEECTTSC
T ss_pred eCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC---CCcEEEEeCCCccccc----cceecCCCc
Confidence 112222 34445577899999999999988 789999995 445543 223334566
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~ 245 (323)
.|.|.+++.+|+|.|+|.| .|..+ .......|.|..+|.+. .+....+..|+.+.|.|.+.|.|.|.+.|+++|..
T Consensus 259 ~L~I~~v~~~D~G~Y~C~a-~N~~G--~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~ 335 (384)
T 3kld_A 259 ILEIPNFQQEDAGSYECVA-ENSRG--KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335 (384)
T ss_dssp EEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred EEEECCCChhhCEEEEEEE-EcCCC--eEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEE
Confidence 8999999999999999999 77733 34556677887777654 45567788999999999999999999999999998
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+.. ..++.+. ..+|.|.++..+|+|.|+|.|.|..|. ....+.|.|..
T Consensus 336 l~~-~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~a~L~V~~ 383 (384)
T 3kld_A 336 LLT-RDRIQIE--------QGTLNITIVNLSDAGMYQCVAENKHGV----IFSSAELSVIA 383 (384)
T ss_dssp CCC-BTTEEEE--------TTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred CCC-CccEEEe--------CCEEEEeecChhhCEEEEEEEEeCCce----EEeceEEEEec
Confidence 864 3444444 468999999999999999999999966 78888888764
No 8
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=3.2e-33 Score=239.84 Aligned_cols=257 Identities=22% Similarity=0.314 Sum_probs=189.3
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN- 104 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~- 104 (323)
+....+.+|+++.|.|.+ .+.+.+.|+++|..+.......... ....+.+.|......|+|.|+|.+.+..+..
T Consensus 128 ~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~ 204 (403)
T 3laf_A 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV---VLPSGALQISRLQPGDSGVYRCSARNPASTRT 204 (403)
T ss_dssp CCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE---ECTTSCEEECSCCGGGCEEEEEEEECSSCCCB
T ss_pred CCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE---EcCCceEEEcccccccCEEEEEEEEcCCCcee
Confidence 345678899999999994 4667999999998875431111111 1123334444344455999999998865442
Q ss_pred --ceeee------------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235 105 --AITGN------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT 169 (323)
Q Consensus 105 --~~~~~------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~ 169 (323)
..... +...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+... ..++. .....|.
T Consensus 205 ~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~---~~~~~~~~~~~L~ 278 (403)
T 3laf_A 205 GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP---PPSFTWLRGEEVIQLR---SKKYSLLGGSNLL 278 (403)
T ss_dssp CCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEES---CCEEEEEETTEECCCS---SSSEEEETTTEEE
T ss_pred ccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCC---CCeEEEEECCeeccCC---CceEEECCccEEE
Confidence 11111 11133344577899999999999987 6799999999887641 22232 4556899
Q ss_pred EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec
Q psy15235 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR 248 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~ 248 (323)
|.++..+|+|.|+|.+ .|.. +.....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..
T Consensus 279 i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~ 355 (403)
T 3laf_A 279 ISNVTDDDSGTYTCVV-TYKN--ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP 355 (403)
T ss_dssp ECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred EeCCCHHHCEEEEEEE-EcCC--CceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCC
Confidence 9999999999999999 6663 345677788888888665 44456678899999999999999999999999988764
Q ss_pred cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
. .+..+. ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|.++|
T Consensus 356 ~-~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~P~ 403 (403)
T 3laf_A 356 S-DYFQIV-------GGSNLRILGVVKSDEGFYQCVAENEAGN----AQSSAQLIVPKPA 403 (403)
T ss_dssp S-SSEEEE-------TTTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEECCCC-
T ss_pred C-CcEEEe-------cCccEEEeccccccCEEEEEEEEcCCce----EEEEEEEEEeCCC
Confidence 4 333333 3678999999999999999999999966 8888999888754
No 9
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=100.00 E-value=6.4e-33 Score=229.98 Aligned_cols=266 Identities=14% Similarity=0.185 Sum_probs=181.6
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc--Cc-----eEEEEEcCccceeec----------cCcceEEEee---eeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI--FE-----QVKWQLNGRNINQSS----------VDSGFAATAN---LTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~~-----~v~W~~~g~~~~~~~----------~~~~~~~~~~---~~~~~~~l 82 (323)
..+..|..+.+..|++|+|.|.+.. .+ .++|+|+|....... ...+..+... ....+.+|
T Consensus 2 Vvv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL 81 (313)
T 4fqp_A 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81 (313)
T ss_dssp CEEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCE
T ss_pred eEEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEE
Confidence 3456677888999999999999542 22 589999876432210 0011111100 11233456
Q ss_pred EEeecc--cCcceEEEeecc-CCccceeeeeee--CCcee------EEecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 83 SIHEAI--LESGYVQSSLFI-PRMNAITGNYDI--EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 83 ~i~~~~--~~G~Y~C~~~~~-~~~~~~~~~~~~--~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
.|.+++ |+|.|+|.+.+. .+.......+.+ .|... .+..++.+.+.|.+.+..| .+.+.|++++..+
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P--~~~i~W~~~~~~~ 159 (313)
T 4fqp_A 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRP--PAQITWHSDLGGM 159 (313)
T ss_dssp EECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBS--CCEEEEEETTCCE
T ss_pred EECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccC--CcEEEeecCCccc
Confidence 666655 599999988543 233222222222 22222 2445788889998764433 6899999998876
Q ss_pred cccccccCcEE-------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCCe
Q psy15235 152 TEATELSGRLT-------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGEK 222 (323)
Q Consensus 152 ~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~~ 222 (323)
.. ..+.. .....|.|.+...+|+|.|+|.+ .|..+.......+.|.|..+|.+.+ .....+.+|+.
T Consensus 160 ~~----~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~ 234 (313)
T 4fqp_A 160 PN----TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV-EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234 (313)
T ss_dssp EE----EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEE-ECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCC
T ss_pred cc----cceeeeecccccccceeeeecccccccCeeEEEEE-EccCcCccceeeeecccccCCccccccccceeecCCCe
Confidence 54 11111 22346888889999999999999 7776565666777788888887653 33445667899
Q ss_pred EEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 223 LRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 223 ~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
++|.|.+.|+|.| .+.|++++..+... ... .+.+|.|.+++.+|+|.|+|.|.|..|. ....+.
T Consensus 235 v~l~C~~~g~P~p~~v~W~~~~~~l~~~---~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~ 299 (313)
T 4fqp_A 235 ATLTCDARSNPEPTGYNWSTTMGPLPPF---AVA--------QGAQLLIRPVDKPINTTLICNVTNALGA----RQAELT 299 (313)
T ss_dssp EEEEEEEEEESCCCEEEEEETTBSCCTT---EEE--------ETTEEEECCCSSCCEEEEEEEEECSSCE----EEEEEE
T ss_pred EEEEEEecCCCCCcEEEEEECCEECCCc---eEE--------eCCEEEECcCChhhCEEEEEEEEeCCCc----EEEEEE
Confidence 9999999999998 69999999877432 111 2578999999999999999999999965 888899
Q ss_pred EEEcceecC
Q psy15235 302 VRVKGKSFG 310 (323)
Q Consensus 302 l~v~~~~~~ 310 (323)
|.|.++|+.
T Consensus 300 l~V~~~PP~ 308 (313)
T 4fqp_A 300 VQVKEGPPH 308 (313)
T ss_dssp EEEECCC--
T ss_pred EEEEeCCCC
Confidence 999887764
No 10
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=228.86 Aligned_cols=260 Identities=18% Similarity=0.200 Sum_probs=178.2
Q ss_pred ceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEe
Q psy15235 23 GKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSS 97 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~ 97 (323)
+.+..+.+..+.+|++++|.|.+. +.+.+.|+++|..+.... . + ....+...|.|.+++. +|.|+|.+
T Consensus 8 P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---~--~--~~~~~~~~L~i~~~~~~d~G~Y~C~~ 80 (317)
T 2y25_A 8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE---K--H--DFKDGICTLLITEFSKKDAGIYEVIL 80 (317)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC---C---------CCEEEEETTCCSTTCSCEEEEE
T ss_pred CcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC---c--E--EEECCeEEEEEccCCcccCeEEEEEE
Confidence 344455568899999999999943 457999999998876531 1 1 1124456777776655 99999999
Q ss_pred eccCCccceeeeeeeC--------CceeEEecCCcEEEEEEeec---------CCCCCCceEEEEECCeeccccccccCc
Q psy15235 98 LFIPRMNAITGNYDIE--------PKYKVFEYRVPFTLKCNVTS---------PPPGDDYQIVWYKGNKSITEATELSGR 160 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~--------~~~~~~~~g~~v~l~C~~~~---------~~~~~~~~i~W~~~~~~~~~~~~~~~~ 160 (323)
.+..+.......+.+. +....+..|+.+.|.|.+.+ ..| .+.+.|++++..+.. ..+
T Consensus 81 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p--~~~i~W~~~~~~~~~----~~~ 154 (317)
T 2y25_A 81 KDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVE--DLKVNWSHNGSAIRY----SDR 154 (317)
T ss_dssp ESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCS--SCEEEEEESSSBCCC----CSS
T ss_pred ECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCC--CcEEEEEECCEECCC----CCC
Confidence 8877654333333221 01111234555555555544 333 689999999998876 444
Q ss_pred EE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe--------------------cceee--eece
Q psy15235 161 LT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM--------------------KPTAK--LVET 214 (323)
Q Consensus 161 ~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--------------------~p~~~--~~~~ 214 (323)
+. .....|.|.+++.+|+|.|+|.+ .|..+ .....+.+.+.. +|.+. .+..
T Consensus 155 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 231 (317)
T 2y25_A 155 VKTGVTGEQIWLQINEPTPNDKGKYVMEL-FDGKT--GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 231 (317)
T ss_dssp EEEEECSSEEEEEEESCCGGGCEEEEEEE-ECSSC--EEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSE
T ss_pred eEEeccCCEEEEEECcCCcccCeeEEEEE-EeCCc--eEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCcc
Confidence 43 34456999999999999999999 67632 233344443321 12222 2335
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~ 294 (323)
..+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+.. .. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 232 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~--~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~--- 304 (317)
T 2y25_A 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKF--EA-GRTAYFTINGVSTADSGKYGLVVKNKYGS--- 304 (317)
T ss_dssp EEEETTSBBCEEEEEECSSCCEEEEEESSSEECCC-SSEEECC--BT-TTEEEEEEBSCCSTTCEEEEEEEEETTEE---
T ss_pred EEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC-CcEEEEE--cC-CCEEEEEECCCCHHHCEEEEEEEEeCCCe---
Confidence 67889999999999999999999999999888643 3444431 11 12469999999999999999999999976
Q ss_pred CceeEEEEEEcc
Q psy15235 295 PNEAFVYVRVKG 306 (323)
Q Consensus 295 ~~~~~~~l~v~~ 306 (323)
....+.|.|..
T Consensus 305 -~~~~~~l~V~~ 315 (317)
T 2y25_A 305 -ETSDFTVSVFI 315 (317)
T ss_dssp -EEEEEEEEEEC
T ss_pred -EEEEEEEEEEc
Confidence 77788887764
No 11
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=221.71 Aligned_cols=248 Identities=10% Similarity=0.089 Sum_probs=178.2
Q ss_pred ceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCcc
Q psy15235 30 DTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMN 104 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~ 104 (323)
.+.+.+|+.+.|.|.. .|.+.++|+|+|..+... .+ +..........|.|.+++. +|.|+|.+.+..+..
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~---~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~ 84 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDS---PR--LEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA 84 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTC---TT--EEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCC---CC--EEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence 4668899999999983 477899999999887643 11 2223345556788877655 999999998865543
Q ss_pred c-e------------------eeeeeeCC-ceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCcEE-
Q psy15235 105 A-I------------------TGNYDIEP-KYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLT- 162 (323)
Q Consensus 105 ~-~------------------~~~~~~~~-~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~- 162 (323)
. . .|.+...+ ....+.+|+.+.|.|.+. +.+ .+.+.|++++..+.. ..++.
T Consensus 85 ~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~i~~----~~~~~~ 157 (312)
T 2y23_A 85 SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSG---NAKVNYIFNEKEIFE----GPKYKM 157 (312)
T ss_dssp EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCS---SCEEEEEETTEEECS----SSSCEE
T ss_pred EEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCC---CCEEEEEECCEECee----CCcEEE
Confidence 2 1 11111211 144577899999999998 666 789999999998876 34333
Q ss_pred -----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE---------------------ecceeeeeceeE
Q psy15235 163 -----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI---------------------MKPTAKLVETLT 216 (323)
Q Consensus 163 -----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~ 216 (323)
.....|.|.+++.+|+|.|+|.+ .+. .......+.+. .+|.+..+....
T Consensus 158 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 232 (312)
T 2y23_A 158 HIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDG----KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 232 (312)
T ss_dssp EEETTTTEEEEEESCCCGGGCEEEEEEE-ESS----SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEE
T ss_pred EEccCCCEEEEEEccCCcccCEeEEEEE-EeC----CceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEE
Confidence 23355999999999999999999 543 12333333331 124443333467
Q ss_pred EeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235 217 VIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 295 (323)
+.+|+.+.|.|.+.+.|++ .+.|++++..+... .++.+.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 233 v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~-~~~~~~~------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~---- 301 (312)
T 2y23_A 233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD------GICTLLITEFSKKDAGIYEVILKDDRGK---- 301 (312)
T ss_dssp EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEE-CCC----------CEEEEEECSCSGGGCEEEEEEEESTTCC----
T ss_pred EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCC-CcEEEEC------CEEEEEECcCCHHHCEEEEEEEEcCCCc----
Confidence 8899999999999999988 99999999988643 3333221 3579999999999999999999999966
Q ss_pred ceeEEEEEEc
Q psy15235 296 NEAFVYVRVK 305 (323)
Q Consensus 296 ~~~~~~l~v~ 305 (323)
....+.|.++
T Consensus 302 ~~~~~~l~i~ 311 (312)
T 2y23_A 302 DKSRLKLVDE 311 (312)
T ss_dssp EEEEEEECSC
T ss_pred eeeeeEEEec
Confidence 7777777654
No 12
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=4.1e-32 Score=232.91 Aligned_cols=272 Identities=19% Similarity=0.255 Sum_probs=191.0
Q ss_pred hccCCceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe-----eccc
Q psy15235 18 SISADGKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH-----EAIL 89 (323)
Q Consensus 18 ~~~~~~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~-----~~~~ 89 (323)
.......+..|.++.+.+|++++|.|.+. +.+.+.|+|+|..+.... ...... ..++.+.+... ...|
T Consensus 18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-~~~~~~---~~~~~l~i~~~~~~~~~~~D 93 (403)
T 3laf_A 18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGM-DDRKQQ---LPNGSLLIQNILHSRHHKPD 93 (403)
T ss_dssp -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTS-CTTEEE---CTTSCEEECSCCCBTTBCSS
T ss_pred CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCC-cccEEE---ecCCcEEEeeeeccCCCCCc
Confidence 34455555677888999999999999953 457899999998876431 111111 11333322221 2336
Q ss_pred CcceEEEeeccCCcc----cee------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235 90 ESGYVQSSLFIPRMN----AIT------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG 159 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~----~~~------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~ 159 (323)
+|.|+|.+.+..... ... +.+...+....+.+|+++.|.|.+.+.+ .+.+.|++++..+..... ..
T Consensus 94 ~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~-~~ 169 (403)
T 3laf_A 94 EGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDP---MPTIHWQKNQQDLNPIPG-DS 169 (403)
T ss_dssp CEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSS---CCEEEEEESSSBCCCCTT-CC
T ss_pred ceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccC---CCeEEEEECCEeccccCC-ce
Confidence 999999998543221 111 1111234445678899999999998887 679999999987753111 22
Q ss_pred cEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee-------eeeceeEEeeCCeEEEEEEEec
Q psy15235 160 RLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA-------KLVETLTVIEGEKLRLECLVVG 231 (323)
Q Consensus 160 ~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~-------~~~~~~~~~~g~~~~l~C~~~g 231 (323)
+.. .....|.|.++..+|+|.|+|.+ .+..+. .......+.|...|.+ ..+....+.+|+.+.|.|.+.+
T Consensus 170 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 247 (403)
T 3laf_A 170 RVVVLPSGALQISRLQPGDSGVYRCSA-RNPAST-RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247 (403)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEE-ECSSCC-CBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEE
T ss_pred EEEEcCCceEEEcccccccCEEEEEEE-EcCCCc-eeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCC
Confidence 222 45668999999999999999999 665332 2334566777665432 1334566789999999999999
Q ss_pred CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 232 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
+|.+.+.|++++..+.....++... ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 248 ~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~ 315 (403)
T 3laf_A 248 YPPPSFTWLRGEEVIQLRSKKYSLL-------GGSNLLISNVTDDDSGTYTCVVTYKNEN----ISASAELTVLVPPWF 315 (403)
T ss_dssp ESCCEEEEEETTEECCCSSSSEEEE-------TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred CCCCeEEEEECCeeccCCCceEEEC-------CccEEEEeCCCHHHCEEEEEEEEcCCCc----eEEEEEEEEECCCcE
Confidence 9999999999999887655555554 3678999999999999999999999865 677778888766543
No 13
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=216.73 Aligned_cols=239 Identities=19% Similarity=0.278 Sum_probs=174.3
Q ss_pred EeeceEEecCCcEEEEEEec--cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM 103 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~ 103 (323)
.+....+.+|+.+.|.|.+. +.+ .++|+++|..+... ...+.|......|+|.|+|.+.+....
T Consensus 7 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------------~~~l~i~~~~~~d~G~Y~C~~~~~~~s 73 (262)
T 3rjd_A 7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------------TPSYRITSASVNDSGEYRCQRGLSGRS 73 (262)
T ss_dssp SSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------------SSEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred CCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------------CCeEEEecCCcccCeEEEEEEecCCcc
Confidence 34557899999999999953 445 89999999877653 333333334445599999999876655
Q ss_pred cceeeeeee-----CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235 104 NAITGNYDI-----EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD 177 (323)
Q Consensus 104 ~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 177 (323)
......+.. .+....+.+|+.+.|.|.+ .+.+ .+.+.|++++..+.. ......|.|.+++.+|
T Consensus 74 ~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p---~~~v~W~~~g~~~~~--------~~~~~~l~i~~~~~~d 142 (262)
T 3rjd_A 74 DPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL---VYNVLYYRNGKAFKF--------FHWNSNLTILKTNISH 142 (262)
T ss_dssp CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCC---CEEEEEEETTEEEEE--------EEECCCEEESSCCGGG
T ss_pred ccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCC---CceEEEEECCccccc--------cCCCCeEEEEECChhh
Confidence 433322221 2333446789999999999 4555 789999999988754 1235679999999999
Q ss_pred CeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCC-Cc----EEEEECCeeeecc
Q psy15235 178 AGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPP-PT----VEWRIGNDTYFRS 249 (323)
Q Consensus 178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~----~~W~~~~~~~~~~ 249 (323)
+|.|+|.+ .+.. ......+.|.|.. +|.+.......+.+|+.+.|.|.+.+.|. +. +.|++++..+...
T Consensus 143 ~G~Y~C~~-~n~~--~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~ 219 (262)
T 3rjd_A 143 NGTYHCSG-MGKH--RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219 (262)
T ss_dssp CEEEEEEE-ESSS--EEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE
T ss_pred CEEEEEEE-eCCC--CccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc
Confidence 99999999 6763 3455566777764 55666555667889999999999999875 43 7899999877532
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
. ....|+|.++..+|+|.|+|.|.|..|.. ...+..+.|.|++
T Consensus 220 ~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~-~~~s~~~~l~V~G 262 (262)
T 3rjd_A 220 N-------------TSSEYQILTARREDSGLYWCEAATEDGNV-LKRSPELELQVLG 262 (262)
T ss_dssp E-------------SCCEEEESSCCGGGCEEEEEEEEETTSSC-EEECCCEEECEEC
T ss_pred C-------------CCceEEEEEechhhCeEEEEEEEcccCce-EEecCCeEEEEeC
Confidence 1 35789999999999999999999999751 1234556666543
No 14
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=231.71 Aligned_cols=265 Identities=12% Similarity=0.190 Sum_probs=179.7
Q ss_pred eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec-------------cCcceEEEeeeeCCeEEEEEeecc--c
Q psy15235 28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS-------------VDSGFAATANLTEDNFKYSIHEAI--L 89 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~--~ 89 (323)
+..+.+.+|++++|.|.+. +.+.++|+|++....... ...++....+...+...|.|.+++ |
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD 85 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence 4467899999999999843 335799999765433210 001111111222334556676665 4
Q ss_pred CcceEEEeeccCCc-cceeeeee--e--------CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccc
Q psy15235 90 ESGYVQSSLFIPRM-NAITGNYD--I--------EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL 157 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~-~~~~~~~~--~--------~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~ 157 (323)
+|.|+|.+.+.... ......+. . .+.......|+.+.|.|.+. +.| .+.|.|++++..+......
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P---~~~i~W~~~~~~~~~~~~~ 162 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKP---VAHIDWEGDLGEMESTTTS 162 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBS---CCEEEECCCSSBCCEEEEE
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcC---CceEEEEECCcccccccce
Confidence 99999999775332 21111111 1 22222344688999999864 556 7899999999877541110
Q ss_pred -cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCCeEEEEEEEecCCC
Q psy15235 158 -SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGEKLRLECLVVGSPP 234 (323)
Q Consensus 158 -~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~ 234 (323)
..........|.|..+..+|+|.|+|.+ .|..+.......+.|.|..+|.+.. .....+..|+.++|.|.+.|+|+
T Consensus 163 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~ 241 (308)
T 4fom_A 163 FPNETATIISQYKLFPTRFARGRRITCVV-KHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP 241 (308)
T ss_dssp CTTSCEEEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred eeeecccccccceEEeeeecCCccEEEEE-EccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence 0111133457899999999999999999 7776555566677777887776652 23455667899999999999998
Q ss_pred C-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 235 P-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 235 ~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
| .+.|++++..+... .... ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.++|..
T Consensus 242 p~~v~W~k~~~~~~~~---~~~~-------~~~~l~i~~v~~~d~G~Y~C~A~N~~G~----~~~~~~l~V~~~P~~ 304 (308)
T 4fom_A 242 PFKSVWSRLDGQWPDG---LLAS-------DNTLHFVHPLTFNYSGVYICKVTNSLGQ----RSDQKVIYISDPPHH 304 (308)
T ss_dssp EEEEECCBSSSCCCSS---CBCS-------TTEEECCSCCCSCCCSEEEEEEEETTEE----EEEEEECCEECCC--
T ss_pred CcEEEEEECCeECCCc---EEEc-------CCeEEEECCCChhhCEEEEEEEEeCCCc----EEEEEEEEEEcCCCC
Confidence 8 69999998876422 1111 3566778999999999999999999976 888899999888753
No 15
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=100.00 E-value=6.8e-32 Score=221.34 Aligned_cols=250 Identities=14% Similarity=0.139 Sum_probs=174.7
Q ss_pred eeceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccc
Q psy15235 28 FGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNA 105 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~ 105 (323)
+....+.+|++++|.|.+.+ .++|++++..+... .... ..|.|.+++ |+|.|+|.+.+ .....
T Consensus 19 ~~~~~v~~G~~v~l~C~~~~--~i~W~~~~~~~~~~----------~~~~--~~L~i~~~~~~d~G~Y~C~~~n-g~~~~ 83 (290)
T 2o26_X 19 QSELIVEAGDTLSLTCIDPD--FVRWTFKTYFNEMV----------ENKK--NEWIQEKAEATRTGTYTCSNSN-GLTSS 83 (290)
T ss_dssp SSEEEEETTSCEEEEEECTT--EEEEEEECSSSCEE----------EECS--SEEEETTCCGGGCEEEEEEESS-SCEEE
T ss_pred CCeEEEcCCCcEEEEECCCC--cEEEecCCcceeee----------cCCC--ceEEEeccCHHhCeEEEEEeeC-CccEE
Confidence 45677999999999999776 99999999877211 1112 455565554 59999999988 22222
Q ss_pred eeeeee------eCCceeEEecCCcEEEEEEeecCCCCCC-ceEEEE-ECCeeccccccccCcEE-eceeEEEEeeeecC
Q psy15235 106 ITGNYD------IEPKYKVFEYRVPFTLKCNVTSPPPGDD-YQIVWY-KGNKSITEATELSGRLT-QSKDSITIRKTTVD 176 (323)
Q Consensus 106 ~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~~~~~~-~~i~W~-~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~ 176 (323)
....+. ..+....+.+|+.+.|.|.+.+ + . +.+.|+ ++|..+.. ..++. .....|.|.++..+
T Consensus 84 ~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p---~~~~v~W~~~~g~~l~~----~~~~~~~~~~~L~i~~v~~~ 155 (290)
T 2o26_X 84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-P---QVSQYSLIECDGKSLPT----DLTFVPNPKAGITIKNVKRA 155 (290)
T ss_dssp EEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-C---SCEEEEEEETTSCCCCT----TCEEEEETTTEEEEESCCGG
T ss_pred EEEEEeCCCcccccccceEEecCCeEEEeCcCCC-C---CCceEEEEeCCCcCCCC----CCceeeCCCCCEEEecccHH
Confidence 222111 1233345678999999999985 5 5 899995 57777765 44544 44568999999999
Q ss_pred CCe-eEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeee---
Q psy15235 177 DAG-QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTY--- 246 (323)
Q Consensus 177 d~G-~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~--- 246 (323)
|+| .|+|.+ .|.. ....+..+.|.|. .+|.+. .+....+.+|+.+.|.|.+.|.|.|. +.|++++..+
T Consensus 156 d~G~~Y~C~a-~n~~-~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~ 233 (290)
T 2o26_X 156 YHRLCVRCAA-QRDG-TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233 (290)
T ss_dssp GTTCEEEEEE-EETT-EEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEEC
T ss_pred HCCCEEEEEE-EECC-ceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccc
Confidence 999 999999 6652 2223345667766 466665 33455788999999999999999996 9999998773
Q ss_pred -eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 247 -FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.......... .......+.|+|.+++.+|+|.|+|.|.|..|. ....+.|.|.++|
T Consensus 234 ~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~P 290 (290)
T 2o26_X 234 AQVKHNSWHRG--DFNYERQETLTISSARVDDSGVFMCYANNTFGS----ANVTTTLKVVEKG 290 (290)
T ss_dssp CCEECCEEEEE--TTEEEEEEEEEESSCCSSSCEEEEEEEECSSCE----EEEEEEECC----
T ss_pred eeecccccccC--ceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCc----EEEEEEEEEEeCC
Confidence 2111111100 000113678999999999999999999999966 7888888887765
No 16
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.5e-31 Score=227.77 Aligned_cols=249 Identities=21% Similarity=0.258 Sum_probs=183.4
Q ss_pred eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-
Q psy15235 29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN- 104 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~- 104 (323)
.+..+.+|++++|.|.. .+.+.+.|++++..+... .. .... .....+.+.|......|+|.|+|.+.+..+..
T Consensus 109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~-~~-~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 185 (382)
T 1cs6_A 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP-AD-GRRF-VSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185 (382)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-CC-SSEE-ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccc-cC-ceEE-EecCceEEEEEeeCcccCeeEEEEEEEcccccc
Confidence 35678999999999983 466899999998775432 11 1111 11223344443334455999999998765211
Q ss_pred --------ce----------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235 105 --------AI----------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK 165 (323)
Q Consensus 105 --------~~----------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+ .|.+.. .+....+..|+.++|.|.+.+.+ .+.+.|++++..+.. ++....
T Consensus 186 ~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~~~------~~~~~~ 256 (382)
T 1cs6_A 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP---VPQIKWRKLDGSQTS------KWLSSE 256 (382)
T ss_dssp EEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEES---CCEEEEEECCSCCSC------CCSBSS
T ss_pred ceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCC---CCEEEEEECCccccc------EEecCC
Confidence 01 222222 34455678899999999999987 689999998876542 122456
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~ 244 (323)
..|.|.++..+|+|.|+|.+ .|.. +.......|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|+++|.
T Consensus 257 ~~L~i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~ 333 (382)
T 1cs6_A 257 PLLHIQNVDFEDEGTYECEA-ENIK--GRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333 (382)
T ss_dssp SEEEECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTE
T ss_pred cEEEEccCChhhCEEEEEEE-EcCC--CeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCE
Confidence 78999999999999999999 6663 335667778888777655 4446678899999999999999999999999999
Q ss_pred eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.+... .++.+. ...|+|.++..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 334 ~~~~~-~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~ 381 (382)
T 1cs6_A 334 PLASQ-NRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGT----VYASAELTVQ 381 (382)
T ss_dssp ECCCC-SSEEEE--------TTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred ECCCC-ceEEEE--------CCEEEECcCCcccCEEEEEEEEeCCCe----EEEEEEEEEe
Confidence 88643 444444 468999999999999999999999966 7788888775
No 17
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.7e-33 Score=233.47 Aligned_cols=272 Identities=15% Similarity=0.248 Sum_probs=135.2
Q ss_pred CceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEee
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSL 98 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~ 98 (323)
.+.+..+.+..+.+|++++|.|.+. |.+.+.|+++|..+... .. + ....+.+.|......|+|.|+|.+.
T Consensus 9 ~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~----~~-~--~~~~~~L~i~~v~~~D~G~Y~C~a~ 81 (334)
T 1ry7_B 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS----ER-V--LVGPQRLQVLNASHEDSGAYSCRQR 81 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCc----cc-E--EeccceEEEeecccccCEEEEEEEE
Confidence 3445557778899999999999954 34799999999877653 11 1 1123334444444455999999998
Q ss_pred ccCCccceeeeeee----------------------------------CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235 99 FIPRMNAITGNYDI----------------------------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW 144 (323)
Q Consensus 99 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W 144 (323)
+. +.......+.+ .+....+.+|+.++|.|.+.+.+ .+.+.|
T Consensus 82 n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p---~~~v~W 157 (334)
T 1ry7_B 82 LT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP---TPSISW 157 (334)
T ss_dssp --------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSS---CCEEEC
T ss_pred eC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCC---CCeEEE
Confidence 76 33211111111 11224577899999999999887 689999
Q ss_pred EECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec----ceee--eeceeEE
Q psy15235 145 YKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK----PTAK--LVETLTV 217 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~----p~~~--~~~~~~~ 217 (323)
++++..+........ ........|.|.+++.+|+|.|+|.+ .|..+ .....+.|.|... |.+. .+....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~ 234 (334)
T 1ry7_B 158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKFG--SIRQTYTLDVLERSPHRPILQAGLPANQTA 234 (334)
T ss_dssp CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEE-EETTE--EEEEEEEEEEECCCCSSCBCCTTCSCCEEE
T ss_pred EECCEECcccccccceecccceEEEEECCCCcccCEEEEEEE-EeCCC--CEEEEEEEEEecCCCCCCceEecCCCceEE
Confidence 999988765211111 11145568999999999999999999 66633 3455666777652 3333 3456778
Q ss_pred eeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCe-eeeecCCC---CCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 218 IEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGR-IKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~-~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+|+.+.|.|.+.|+|.+.+.|++ +|..+...... ..+..... .......|.|.+++.+|+|.|+|.|.|..
T Consensus 235 ~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 314 (334)
T 1ry7_B 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314 (334)
T ss_dssp ESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESS
T ss_pred eCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCC
Confidence 899999999999999999999999 66665433221 11110000 00123589999999999999999999999
Q ss_pred cCCCCCceeEEEEEEcceecCc
Q psy15235 290 TRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
|. ....+.|.|.+.++++
T Consensus 315 G~----~~~~~~l~V~~~~~~~ 332 (334)
T 1ry7_B 315 GF----SHHSAWLVVLPAEEEL 332 (334)
T ss_dssp CC----EEEEEEEEEECSCCC-
T ss_pred Ce----EEEEEEEEEEECCCCc
Confidence 65 8889999998877654
No 18
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=100.00 E-value=5.1e-33 Score=234.09 Aligned_cols=269 Identities=16% Similarity=0.196 Sum_probs=154.0
Q ss_pred EeeceEEecCCcEEEEEEecc-------------CceEEEEEcCcccee--ecc--CcceEEEeeeeCCeEEEEEeeccc
Q psy15235 27 YFGDTEIMEGAPINISCILTI-------------FEQVKWQLNGRNINQ--SSV--DSGFAATANLTEDNFKYSIHEAIL 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~-------------~~~v~W~~~g~~~~~--~~~--~~~~~~~~~~~~~~~~l~i~~~~~ 89 (323)
....+.+.+|+++.|.|.+.+ .+.++|++++..... ... ..... .....+.+.|......|
T Consensus 13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D 90 (349)
T 4dep_C 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENR--ISKEKDVLWFRPTLLND 90 (349)
T ss_dssp CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGC--EEEETTEEEESSCCGGG
T ss_pred eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCce--EeecCCEEEEccCChhh
Confidence 346688999999999999543 389999998853221 100 01111 12234444444444456
Q ss_pred CcceEEEeeccCCccceeeeeee--C----------CceeEEecCCcEEEEEEe-----ecCCCCCCceEEEEECCeecc
Q psy15235 90 ESGYVQSSLFIPRMNAITGNYDI--E----------PKYKVFEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~~~--~----------~~~~~~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~ 152 (323)
+|.|+|.+.+..+.......+.+ . +....+..|+.+.|.|.+ .+.+ .+.+.|++++..+.
T Consensus 91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p---~~~v~W~k~~~~l~ 167 (349)
T 4dep_C 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV---KPTITWYMGCYKIQ 167 (349)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTS---CCEEEEEETTEECC
T ss_pred CEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCC---CceEEEeeCCEECC
Confidence 99999999987665543333333 1 223456789999999975 5556 78999999999886
Q ss_pred ccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEe------cceeeeecee---EEeeCC
Q psy15235 153 EATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIM------KPTAKLVETL---TVIEGE 221 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~------~p~~~~~~~~---~~~~g~ 221 (323)
. ..++......|.|.+++.+|+|.|+|.+ .+..+... ....+.|.|.. +|.+..+... .+.+|+
T Consensus 168 ~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~ 242 (349)
T 4dep_C 168 N----FNNVIPEGMNLSFLIALISNNGNYTCVV-TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGE 242 (349)
T ss_dssp S----CSSEEEETTEEEEESCCGGGCEEEEEEE-EEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------
T ss_pred C----ccceeecCCEEEEeeeeecCCcEEEEEE-EEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCC
Confidence 5 4555545578999999999999999999 66532222 24555666655 4555543322 678899
Q ss_pred eEEEEEEEe----cCCCCcEEEEECCeeeeccCCeeeeec-----CCCCCCcceeEEEeecCcCCC-eEEEEEEeecccC
Q psy15235 222 KLRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSE-----HPEKGTANSVLQIDEATMADR-GNYYCHGNNVATR 291 (323)
Q Consensus 222 ~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~ 291 (323)
.+.|.|.+. |.|.+.+.|++++..+.....++.+.. ...+.....+|+|.++..+|. |.|+|.|.|..|.
T Consensus 243 ~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~ 322 (349)
T 4dep_C 243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE 322 (349)
T ss_dssp --CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCE
T ss_pred cEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCc
Confidence 999999998 568899999999988765223332210 001111356699999999999 9999999999965
Q ss_pred CCCCceeEEEEEEcceec
Q psy15235 292 NSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 292 ~~~~~~~~~~l~v~~~~~ 309 (323)
....+.|.|...++
T Consensus 323 ----~~~~~~l~v~~~~p 336 (349)
T 4dep_C 323 ----VAKAAKVKQKVPAP 336 (349)
T ss_dssp ----EEEECC--------
T ss_pred ----EEEEEEEeeecCCC
Confidence 77888888866433
No 19
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=100.00 E-value=3.2e-32 Score=225.91 Aligned_cols=263 Identities=15% Similarity=0.150 Sum_probs=179.7
Q ss_pred eceEEecCCcEEEEEEec--c-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235 29 GDTEIMEGAPINISCILT--I-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM 103 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~--~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~ 103 (323)
..+.+.+|+++.|.|.+. + .+.++|+|+|..+.......... ....+ .|.|.++ .|+|.|+|.+.+..+.
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~---~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI---HQHKE--KLWFVPAKVEDSGHYYCVVRNSSYC 87 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSS---EECSS--BEECTTCCGGGCSCCEECCCSSSCC
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcE---eccCC--eEEECCCChhhCEEEEEEEeCCceE
Confidence 357789999999999843 3 56999999987544321111111 11233 4555554 4599999999987665
Q ss_pred cceeeeeee---CCc---------eeEEecCCcEEEEEEe------ecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235 104 NAITGNYDI---EPK---------YKVFEYRVPFTLKCNV------TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK 165 (323)
Q Consensus 104 ~~~~~~~~~---~~~---------~~~~~~g~~v~l~C~~------~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 165 (323)
......+.+ .|. ...+..|+.+.|.|.+ .+.| .+.+.|++++..+... ..++....
T Consensus 88 ~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p---~~~i~W~k~~~~l~~~---~~~~~~~~ 161 (315)
T 1itb_B 88 LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLLD---NIHFSGVK 161 (315)
T ss_dssp CCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTC---CCCCEEEETTEECCCC---SSSEEEET
T ss_pred EEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCC---CCEEEEEECCEECCCc---cceEeecC
Confidence 433333221 221 1347789999999998 6666 6899999999988641 23444556
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCC-CceeeeeEEE-----ecceeeeece--eEEeeCCeEEEEEEEecCCCCcE
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTT-PLAQADFDVI-----MKPTAKLVET--LTVIEGEKLRLECLVVGSPPPTV 237 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~-----~~p~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~ 237 (323)
..|.|.++..+|+|.|+|.+..+..+... ....+.+.+. .+|.+..+.. ..+.+|+.+.|.|.+.|.|.|.+
T Consensus 162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 68999999999999999999314432211 1233333333 3566654333 46789999999999999999999
Q ss_pred EEEECCeeeeccCC-----eeeeecCCCC--CCcceeEEEeecCcCC-CeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 238 EWRIGNDTYFRSQG-----RIKLSEHPEK--GTANSVLQIDEATMAD-RGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 238 ~W~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.|+++|..+..... +......... ....+.|.|.++..+| +|.|+|.|.|..|. ....+.|.|+.
T Consensus 242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~----~~~~~~l~v~~ 314 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI----DAAYIQLIYPV 314 (315)
T ss_dssp EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCC----EEEEEEEECCC
T ss_pred EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCc----eeEEEEEEecC
Confidence 99999998865432 1111100000 0124589999999999 99999999999966 88888888764
No 20
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=100.00 E-value=4.6e-31 Score=216.23 Aligned_cols=254 Identities=16% Similarity=0.178 Sum_probs=175.9
Q ss_pred eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccce
Q psy15235 29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~~ 106 (323)
..+.+.+|++++|.|.+.+ .+.|++++...... ........|.|.+++ |+|.|+|.+.+..+....
T Consensus 12 ~~~~v~~G~~v~L~C~~~~--~v~W~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 79 (289)
T 3ejj_X 12 PELVVEPGETVTLRCVSNG--SVEWDGPISPYWTL----------DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST 79 (289)
T ss_dssp SEEEECTTCCEEEEEECSS--CCEEECSCSSSSEE----------CCCSSCCEEEESSCCGGGCEEEEEECCC-----CE
T ss_pred ceEEECCCCCEEEEEEeCC--cEEEccCCCceEEE----------eccCCccEEEEeeeccccCEEEEEEEeccCCccee
Confidence 5577899999999999765 59999876543221 112333456666554 599999999876554433
Q ss_pred eeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeec
Q psy15235 107 TGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTV 175 (323)
Q Consensus 107 ~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~ 175 (323)
...+.+ .+....+.+|+.+.|.|.+.+.++ ...+.|++ ++..+.. ..++. .....|.|.++..
T Consensus 80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~ 153 (289)
T 3ejj_X 80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL--KDSVSLMREGGRQVLR----KTVYFFSPWRGFIIRKAKV 153 (289)
T ss_dssp EEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGG--GGSEEEEEGGGEECCT----TCCEEEETTTEEEESSCCG
T ss_pred EEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCc--ceEEEEEecCCeecCC----CccEEECCCCCEEEeeccc
Confidence 323222 334455788999999999998662 33599987 6666654 44544 4556799999999
Q ss_pred CCCeeEEEEEEcCCCCCCCCceeeeeEEE----ecceeeee-ceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeecc
Q psy15235 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVI----MKPTAKLV-ETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRS 249 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~-~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~ 249 (323)
+|+|.|+|.+..+. .......+.|.|. .+|.+... ....+.+|+.+.|.|.+.+ .|.+.+.|++++..+...
T Consensus 154 ~d~G~Y~C~a~~~~--~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~ 231 (289)
T 3ejj_X 154 LDSNTYVCKTMVNG--RESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231 (289)
T ss_dssp GGCEEEEEEEEETT--EEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC
T ss_pred ccCEEEEEEEEeCC--CccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc
Confidence 99999999993243 3345566777777 46666643 3445578999999999988 788999999999877532
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
.... .. .........|.|.+++.+|+|.|+|.|.|..|. ...++.|.+.+++.
T Consensus 232 ~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 232 LNSD-FQ--DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT----RTATMNFQVVESHH 284 (289)
T ss_dssp EEEE-EC--SSSEEEEEEEEESSCCSSSCEEEEEEEECSSCE----EEEEEEEECC----
T ss_pred CCcc-cc--cceEEeeEEEEEEeecccCCEEEEEEEEcCCCC----ccccEEEEEEeccc
Confidence 1111 00 111113688999999999999999999999965 88999998887764
No 21
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=100.00 E-value=8.2e-31 Score=218.75 Aligned_cols=259 Identities=16% Similarity=0.203 Sum_probs=178.4
Q ss_pred eeceEEecCCcEEEEEEec-----------cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCc-ceEE
Q psy15235 28 FGDTEIMEGAPINISCILT-----------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILES-GYVQ 95 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-----------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G-~Y~C 95 (323)
...+.+.+|+++.|.|.+. +.+.++|+|++..+.... .. ...+.+.|.-....|+| .|+|
T Consensus 36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~---~~-----~~~~~L~i~~v~~~D~Gs~Y~C 107 (329)
T 3oq3_B 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN---RR-----VKNGDLWIANYTSNDSHRRYLC 107 (329)
T ss_dssp EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS---TT-----EETTEEEESSCCGGGGGCCEEE
T ss_pred cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC---ce-----eecceEEEcCCChHhCCCcEEE
Confidence 3567799999999999932 446899999998776531 11 12444444444445699 9999
Q ss_pred EeeccCCccceeee-eee--CCcee------EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEecee
Q psy15235 96 SSLFIPRMNAITGN-YDI--EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166 (323)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~--~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+.+..+....... ..+ .+... .+.+|+.+.|.|.+.+.|+ .+.+.|++++..+.. ...++...+.
T Consensus 108 ~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~--~~~i~W~k~~~~l~~---~~~~~~~~~~ 182 (329)
T 3oq3_B 108 TVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH--YNNITWYKNNQELII---DGTKYSQSGQ 182 (329)
T ss_dssp EEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCC--CCEEEEEETTEECCC---SSSSEEEETT
T ss_pred EEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCC--CceEEEEECCccCCC---CCceEecCCC
Confidence 99987654221111 111 22211 1445999999999998763 379999999998853 1345544468
Q ss_pred EEEEeeeecCCCeeEEEEEEcCC--CCCCCCc--eeeeeEEEecc----eeeeeceeEEeeCCeEEEEEEEecCC---CC
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPK--STNTTPL--AQADFDVIMKP----TAKLVETLTVIEGEKLRLECLVVGSP---PP 235 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~--~~~~l~v~~~p----~~~~~~~~~~~~g~~~~l~C~~~g~p---~~ 235 (323)
.|.|.++..+|+|.|+|.+ .|. .+..... ..+.|.|..+| .+..+....+.+|+.+.|.|.+.|.| .+
T Consensus 183 ~L~I~~v~~~D~G~Y~C~a-~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~ 261 (329)
T 3oq3_B 183 NLIIHNPELEDSGRYDCYV-HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261 (329)
T ss_dssp EEEECSCCGGGCEEEEEEE-EECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred EEEEeecChhhCEEEEEEE-EecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence 8999999999999999999 654 3232222 23567776654 22255567888999999999999998 67
Q ss_pred -cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeecccCCCCCceeEEEEEE
Q psy15235 236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 236 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.+.|++++..+...+.+...............|+|.+++.+|.| .|+|.|.|..|. ....+.|.|
T Consensus 262 i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~----~~~~~~l~v 328 (329)
T 3oq3_B 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD----KTLTTTVVL 328 (329)
T ss_dssp CEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE----EEEEEEEEE
T ss_pred cEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc----eEEEEEEEe
Confidence 88999999875333222111100111124688999999999999 999999999965 777777765
No 22
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-31 Score=226.47 Aligned_cols=254 Identities=12% Similarity=0.143 Sum_probs=167.9
Q ss_pred ceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcccee
Q psy15235 30 DTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAIT 107 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~ 107 (323)
+..+..|+.+.|.|. +.|.|.++|++++..+......... ... .....+ ...++|.|+|.+.|..+.....
T Consensus 148 p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~--~~~--~~~~~l---~~~d~G~Y~C~A~N~~G~~~~~ 220 (423)
T 3qs7_E 148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA--VVK--KEEKVL---HELFGTDIRCCARNELGRECTR 220 (423)
T ss_dssp EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------CEE--ECCSEE---CCCCSSCEEEEEECSSCEEEEE
T ss_pred CcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccc--ccc--ccceEE---ecccCeEEEEEEEcCCCCccee
Confidence 344567999999999 5678999999988754321000000 000 111111 3456999999999887654321
Q ss_pred -eeeee------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeeee
Q psy15235 108 -GNYDI------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTT 174 (323)
Q Consensus 108 -~~~~~------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~ 174 (323)
..+.+ .+....+.+|+.+.|.|.+.+.+| .+.|.|++++..+.....+ ..+.......|.|.++.
T Consensus 221 ~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p--~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 298 (423)
T 3qs7_E 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298 (423)
T ss_dssp CEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSS--CCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred eEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCC--CcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence 22222 333456788999999999998443 6899999999877541111 11112334579999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee---ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~ 251 (323)
.+|+|.|+|.| .|. ....+.|.|..+|.+... ....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....
T Consensus 299 ~~D~G~Y~C~A-~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~ 372 (423)
T 3qs7_E 299 RNDTGYYTCSS-SKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372 (423)
T ss_dssp TTTCEEEEEEE-TTE-----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCC
T ss_pred HHHCEEEEEEE-ecC-----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccc
Confidence 99999999999 765 567778888888876532 245677899999999999999999999999998864421
Q ss_pred eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
.. . ....+.+.....+|+|.|+|.|.|..|. ...++.|.|.++|.+.
T Consensus 373 ~~--~-------~~~~~~~~~~~~~D~G~YtC~A~N~~G~----~~~s~~L~v~~~p~~~ 419 (423)
T 3qs7_E 373 GL--D-------NGYSISKFCNHKHQPGEYIFHAENDDAQ----FTKMFTLNIRSGTKHH 419 (423)
T ss_dssp BC--S-------SSSEEEEECCCTTCCSCEEEEEEETTEE----EEEEEEEC--------
T ss_pred cc--c-------CCcEEEEEecccccCEEEEEEEEcCCce----EEEEEEEEEecCCccc
Confidence 00 0 1122323556778999999999999966 8999999999988764
No 23
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.4e-30 Score=222.85 Aligned_cols=254 Identities=20% Similarity=0.283 Sum_probs=183.2
Q ss_pred eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeec---cCcceEEEeeeeCCeEEEEEeecccCc---ceEEEeec
Q psy15235 29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSS---VDSGFAATANLTEDNFKYSIHEAILES---GYVQSSLF 99 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~G---~Y~C~~~~ 99 (323)
.+..+.+|+.+.|.|.+ .|.+.+.|++++....... ..... +.. ...+.+.+......|.| .|+|.+.+
T Consensus 108 ~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~-~~~~~L~i~~v~~~d~G~~~~Y~C~a~n 185 (395)
T 1bih_A 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR-ITA-GPDGNLYFTIVTKEDVSDIYKYVCTAKN 185 (395)
T ss_dssp EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT-EEE-CTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc-EEE-cCCCcEEEEEEeeccCCCceEEEEEEEe
Confidence 35667899999999993 4678999999862111110 00111 111 12445555555556689 99999998
Q ss_pred cCCccceeeee---ee----------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc
Q psy15235 100 IPRMNAITGNY---DI----------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR 160 (323)
Q Consensus 100 ~~~~~~~~~~~---~~----------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~ 160 (323)
..+........ .. .+....+.+|+.+.|.|.+.+.+ .+.+.|+++|..+... ...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p---~~~i~W~~~g~~~~~~--~~~~ 260 (395)
T 1bih_A 186 AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP---MGYPNYFKNGKDVNGN--PEDR 260 (395)
T ss_dssp TTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSS---CCCCEEEETTEECCCC--TTSS
T ss_pred cccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCC---CCeEEEEECCEEcCCC--Ccee
Confidence 77663221110 00 12334577899999999999888 6789999999887641 1223
Q ss_pred EE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-e-eEEeeCCeEEEEEEEecCCC
Q psy15235 161 LT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-T-LTVIEGEKLRLECLVVGSPP 234 (323)
Q Consensus 161 ~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~-~~~~~g~~~~l~C~~~g~p~ 234 (323)
+. .....|.|.++..+|+|.|+|.+ .|..+. .....+.|.|..+|.+...+ . ..+.+|+.+.|.|.+.|+|.
T Consensus 261 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~-~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 338 (395)
T 1bih_A 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEV-DNGVGK-PQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA 338 (395)
T ss_dssp EESCSSSTTSEEEESSCCGGGCEEEEEEE-CCSSSS-CEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESC
T ss_pred EEEEecCCCceEEEccCChhhCEEEEEEE-EeCCCC-ceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccC
Confidence 32 23347999999999999999999 776433 12337788888888777433 3 67889999999999999999
Q ss_pred CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 235 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
|.+.|++++..+.. .++.+. ...|+|.++..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 339 p~v~W~~~g~~~~~--~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~ 395 (395)
T 1bih_A 339 PNVVWSHNAKPLSG--GRATVT--------DSGLVIKGVKNGDKGYYGCRATNEHGD----KYFETLVQVN 395 (395)
T ss_dssp CCCEEEETTEECCS--SSEEEE--------TTEEEESSCCSTTCEEEEEEEEETTEE----EEEEEEEEEC
T ss_pred CeeEEEECCEECCC--CceEEE--------CCEEEEeeCCcccCEEEEEEEEccCCC----ceEEEEEEEC
Confidence 99999999998753 355544 348999999999999999999999966 7778888763
No 24
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=3.3e-31 Score=227.33 Aligned_cols=253 Identities=18% Similarity=0.270 Sum_probs=182.2
Q ss_pred eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcc
Q psy15235 29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMN 104 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~ 104 (323)
.+..+.+|+.++|.|.+ .+.+.+.|++++...... ...... ...+.+.+......| +|.|+|.+.+..+..
T Consensus 124 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~----~~~~~~-~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~ 198 (404)
T 3p3y_A 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ----DKRVSQ-GHNGDLYFSNVMLQDMQTDYSCNARFHFTHT 198 (404)
T ss_dssp CCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCC----CSSEEE-CTTSCEEESSCCSGGGSSCBEEEEECTTTCC
T ss_pred CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCC----CCcEEE-cCCCcEEEEeeeeccCCcceEEEEEeccccc
Confidence 34678899999999984 466799999987544332 111111 123344333333445 599999998765432
Q ss_pred c-----eeeeeee-------C---------CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEE
Q psy15235 105 A-----ITGNYDI-------E---------PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLT 162 (323)
Q Consensus 105 ~-----~~~~~~~-------~---------~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~ 162 (323)
. +...+.. . +....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. .. ++.
T Consensus 199 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~ 271 (404)
T 3p3y_A 199 IQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP---TPDIAWYKKGGDLPS----DKAKFE 271 (404)
T ss_dssp EEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSS---CCEEEEEETTBCCCT----TTEEEE
T ss_pred eeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCC---CCcEEEEECCEECCC----Cccccc
Confidence 1 1111110 1 1224477899999999999987 679999999988765 22 333
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 241 (323)
.....|.|.++..+|+|.|+|.+ .|..+ .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++
T Consensus 272 ~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~ 348 (404)
T 3p3y_A 272 NFNKALRITNVSEEDSGEYFCLA-SNKMG--SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348 (404)
T ss_dssp GGGTEEEESSCCGGGCEEEEEEE-ECSSC--EEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred ccCceEEEccCCHhHCEEEEEEE-EeCCC--cEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEE
Confidence 55678999999999999999999 77743 35667788888888665 4445778899999999999999999999999
Q ss_pred CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+|..+.......... ..+..|.|.++..+|+|.|+|.|.|..|. ....+.|.|.+
T Consensus 349 ~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~d 403 (404)
T 3p3y_A 349 NGEPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEHGY----LLANAFVSVLD 403 (404)
T ss_dssp TTEEGGGSCCCTTEE------EETTEEEESSCCSSCCCEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred CCEecCCCCCCceEE------ecCCEEEEeecCHHHCEEEEEEEEeCCCc----EEEEEEEEEEe
Confidence 999886543211111 02568999999999999999999999966 77888887754
No 25
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.98 E-value=7.7e-31 Score=223.55 Aligned_cols=261 Identities=18% Similarity=0.272 Sum_probs=172.9
Q ss_pred EEeeceEE---ecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe-ecccCcceEEEeec
Q psy15235 26 TYFGDTEI---MEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH-EAILESGYVQSSLF 99 (323)
Q Consensus 26 ~~~~~~~v---~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~G~Y~C~~~~ 99 (323)
..|.+..+ .+|+++.|.|. +.|.+.++|+|+|..+.... . ......++.+.+... ...|+|.|+|.+.|
T Consensus 10 ~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~---~--~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N 84 (384)
T 3kld_A 10 QEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM---D--FRYSVVDGSLLINNPNKTQDAGTYQCIATN 84 (384)
T ss_dssp ECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC---------CEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred eCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCC---C--ccEEEECCEEEEcCCCCcccCEEEEEEEEc
Confidence 34444444 58999999999 46788999999998886531 1 112223454433322 33569999999998
Q ss_pred cCCcc-----ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc-EE-eceeE
Q psy15235 100 IPRMN-----AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-LT-QSKDS 167 (323)
Q Consensus 100 ~~~~~-----~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~-~~~~~ 167 (323)
..+.. .+...+.. ......+.+|+.+.|.|......| .+.+.|++++.++.. ..+ +. .....
T Consensus 85 ~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~----~~~~~~~~~~~~ 158 (384)
T 3kld_A 85 SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG--ELSYAWIFNEYPSYQ----DNRRFVSQETGN 158 (384)
T ss_dssp TTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEES--CEEEEEEETTEECCC----SSSEEECTTTCC
T ss_pred CcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCC--CeEEEEEECCCCCEe----eccEEEEcCCCc
Confidence 76542 12111111 122345778999999997654333 679999999987654 333 22 44567
Q ss_pred EEEeeeecCCCeeEEEEEEcCCCCCCC-CceeeeeEEE-------ecceee--eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPKSTNTT-PLAQADFDVI-------MKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTV 237 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~-------~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~ 237 (323)
|.|.++..+|+|.|+|.+ .|..+... ......+.+. ..|.+. .+....+.+|+.+.|.|.+.|+|.|.+
T Consensus 159 L~I~~v~~~D~G~Y~C~a-~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i 237 (384)
T 3kld_A 159 LYIAKVEKSDVGNYTCVV-TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI 237 (384)
T ss_dssp EEESSCCGGGCEEEEEEE-EETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred EEEeecCHHHCceEEEEE-ecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence 999999999999999999 66533211 0111122221 123322 344566888999999999999999999
Q ss_pred EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.|++++........+.. . ....|.|.+++.+|+|.|+|.|.|..|. ......|.|...|..
T Consensus 238 ~W~k~~~~~~~~~~~~~-~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~ 298 (384)
T 3kld_A 238 LWRRADGKPIARKARRH-K-------SNGILEIPNFQQEDAGSYECVAENSRGK----NVAKGQLTFYAQPNW 298 (384)
T ss_dssp EEEETTCCCCCTTCEEC-T-------TSCEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred EEEeCCCccccccceec-C-------CCcEEEECCCChhhCEEEEEEEEcCCCe----EEEEEEEEEecCCcc
Confidence 99996543222222211 1 3578999999999999999999999976 667777777766643
No 26
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.98 E-value=7.9e-31 Score=223.84 Aligned_cols=248 Identities=21% Similarity=0.283 Sum_probs=177.2
Q ss_pred eceEEecCCcEEEEEEecc-----CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccC-cceEEEeecc
Q psy15235 29 GDTEIMEGAPINISCILTI-----FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILE-SGYVQSSLFI 100 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~-----~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~-G~Y~C~~~~~ 100 (323)
.+..+.+|+.++|.|.+.. .+.+.|++++..+.............. ..+ .|.|.++ .|+ |.|+|.+.+.
T Consensus 111 ~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~~G~Y~C~~~n~ 187 (388)
T 2v5m_A 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PSG--ELHIREVGPEDGYKSYQCRTKHR 187 (388)
T ss_dssp CCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-TTS--CEEESSCCGGGGGCCEEEEEEET
T ss_pred cceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-cCC--cEEEecCCccccCeeEEEEeccC
Confidence 4567889999999999542 278999999887654311111111111 133 3555554 457 9999999876
Q ss_pred CCcc--------ceeee---------ee-eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--cccccCc
Q psy15235 101 PRMN--------AITGN---------YD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--ATELSGR 160 (323)
Q Consensus 101 ~~~~--------~~~~~---------~~-~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~ 160 (323)
.+.. .+... +. .......+.+|+.++|.|.+.+.| .+.|.|++++..+.. ......+
T Consensus 188 ~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~ 264 (388)
T 2v5m_A 188 LTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP---APSFRWYKFIEGTTRKQAVVLNDR 264 (388)
T ss_dssp TTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES---CCEEEEEEECTTSSCEEECCCSSS
T ss_pred CCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC---CCEEEEEecCCCCcccccccccCc
Confidence 4221 11111 00 012233467899999999999887 689999997543321 1112344
Q ss_pred EEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEW 239 (323)
Q Consensus 161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W 239 (323)
+......|.|.++..+|+|.|+|.+ .|..+ .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|
T Consensus 265 ~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W 341 (388)
T 2v5m_A 265 VKQVSGTLIIKDAVVEDSGKYLCVV-NNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341 (388)
T ss_dssp EEEETTEEEESSCCGGGCEEEEEEE-ECSSC--EEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEE
T ss_pred eecccCEEEECcCCHHHCeEEEEEE-ecCCC--ceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEE
Confidence 4445678999999999999999999 77743 35667778888877665 44466788999999999999999999999
Q ss_pred EECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
+++|..+... .+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|
T Consensus 342 ~~~g~~i~~~---------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V 387 (388)
T 2v5m_A 342 MKDGKAIGHS---------------ESVLRIESVKKEDKGMYQCFVRNDRES----AEASAELKL 387 (388)
T ss_dssp EETTEECSCC---------------SSEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEE
T ss_pred EECCEECccC---------------CCEEEEecCChhhCEEEEEEEEcCCCc----EEEEEEEEe
Confidence 9999887422 468999999999999999999999965 778888776
No 27
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.98 E-value=2.7e-30 Score=229.07 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=189.2
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeecccCc-ceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAILES-GYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G-~Y~C~~~~~~~ 102 (323)
.+.+..+.+|++++|.|.+. +.+.++|++ +|..+... ..+... ..+.+.+......|+| .|+|.+.+..+
T Consensus 120 ~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~-----~~~~~~-~~~~L~i~~~~~~d~G~~Y~C~a~n~~~ 193 (524)
T 2ec8_A 120 VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD-----LRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGK 193 (524)
T ss_dssp CCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSS-----CEEEEE-TTTEEEEESCCGGGTTCEEEEEEC----
T ss_pred cccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCC-----CceeEC-CCccEEEeccchhhCCceEEEEEEECCc
Confidence 34557789999999999954 337999998 77666543 112222 1344444444455599 99999987644
Q ss_pred cc---c----------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeec--cccc--cccCc-EEe
Q psy15235 103 MN---A----------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSI--TEAT--ELSGR-LTQ 163 (323)
Q Consensus 103 ~~---~----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~--~~~~--~~~~~-~~~ 163 (323)
.. . ..|.+...+....+.+|+.++|.|.+.+.+ .+ .+.|++++..+ .... ..... ...
T Consensus 194 ~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 270 (524)
T 2ec8_A 194 SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS---SSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270 (524)
T ss_dssp CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESS---TTCEEEEEETTCSCCCCEEEEEEECSSSCEE
T ss_pred eEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCC---CcEEEEEEeCCCCCccccccccccccCCccc
Confidence 32 1 112333344555688999999999999877 45 49999999873 2200 00000 114
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec----eeEEeeCCeEEEEEEEecCCCCc-EE
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE----TLTVIEGEKLRLECLVVGSPPPT-VE 238 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~----~~~~~~g~~~~l~C~~~g~p~~~-~~ 238 (323)
....|.|.++..+|+|.|+|.+ .|..+ .....+.|.|..+|.+...+ ...+.+|+.+.|.|.+.|+|.|. +.
T Consensus 271 ~~~~L~I~~~~~~D~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~ 347 (524)
T 2ec8_A 271 RQATLTISSARVNDSGVFMCYA-NNTFG--SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347 (524)
T ss_dssp EEEEEEESSCCTTTCEEEEEEE-ECSSC--EEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEE
T ss_pred eEEEEEECCCCHHHCEEEEEEE-EecCC--ceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEE
Confidence 4678999999999999999999 77633 34557788888888776432 57788999999999999999998 99
Q ss_pred EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
|++++..+.....++..............|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|...
T Consensus 348 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~P~i~ 416 (524)
T 2ec8_A 348 WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN----AAIAFNVYVNTKPEIL 416 (524)
T ss_dssp EESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEECEEEEEE
T ss_pred EEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce----EEEEEEEEEecCCeEe
Confidence 99999888655434333311111123578999999999999999999999965 7888899998777544
No 28
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=229.17 Aligned_cols=252 Identities=12% Similarity=0.121 Sum_probs=173.0
Q ss_pred ceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcccee
Q psy15235 30 DTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAIT 107 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~ 107 (323)
+.....|+.+.|.|. +.|.|.++|++++..+..... ......... .......|+|.|+|.+.|..+.....
T Consensus 148 p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~d~G~Y~C~A~N~~G~~~~~ 220 (527)
T 3qs9_E 148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE--ESPAVVKKE-----EKVLHELFGTDIRCCARNELGRECTR 220 (527)
T ss_dssp EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------CEEEC-----CSEECCCCSSCEEEEEECSSCEEEEE
T ss_pred CcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc--cCCcEEEEe-----eeeccccCCEEEEEEEEeCCCcccce
Confidence 334567888999999 567899999998766532200 000000000 11122456999999999877665332
Q ss_pred -eeeee------CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeee
Q psy15235 108 -GNYDI------EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKT 173 (323)
Q Consensus 108 -~~~~~------~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~ 173 (323)
..+.+ .+....+.+|+.+.|.|.+. +.+ .+.|+|++++..+...... ..+.......|.|.++
T Consensus 221 ~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v 297 (527)
T 3qs9_E 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH---GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297 (527)
T ss_dssp CEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSS---CCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSC
T ss_pred EEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCC---CeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccC
Confidence 22222 34455688899999999997 766 7899999999877551111 0111133456999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~ 250 (323)
+.+|+|.|+|.| .|. ....+.|.|..+|.+.... ...+.+|+.+.|.|.+.|+|.|.+.|+++|..+....
T Consensus 298 ~~~DsG~Y~C~a-~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~ 371 (527)
T 3qs9_E 298 ARNDTGYYTCSS-SKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371 (527)
T ss_dssp CGGGCEEEEEEE-TTE-----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC
T ss_pred CcccCeEEEEEE-EeC-----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc
Confidence 999999999999 765 5667788888877665322 3567789999999999999999999999999886443
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
. ... ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 372 ~-~~~--------~~~~L~I~~v~~~D~G~YtC~A~N~~g~----~~~~~~L~V~~~P~i 418 (527)
T 3qs9_E 372 K-GLD--------NGYSISKFCNHKHQPGEYIFHAENDDAQ----FTKMFTLNIRRKPQV 418 (527)
T ss_dssp C-BCS--------SSSEEEEECCCTTCCSCEEEEEEETTEE----EEEEEEEC--CCCEE
T ss_pred c-ccc--------CCcEEEEecCCcccCEEEEEEEEeCCCc----EEEEEEEEEecCCeE
Confidence 2 111 3578999999999999999999999966 777888888866643
No 29
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=5.6e-31 Score=222.79 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=174.1
Q ss_pred ceEEecCCcEEEEEEe--ccCceEEEEEcCccceeecc---------CcceEEEeee---eCCeEEEEEeecc--cCcce
Q psy15235 30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSV---------DSGFAATANL---TEDNFKYSIHEAI--LESGY 93 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~---------~~~~~~~~~~---~~~~~~l~i~~~~--~~G~Y 93 (323)
.+.+.+|++++|.|.+ .+.+.+.|+|++..+..... .....+.... ..+...|.|.+++ |+|.|
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 3678999999999995 46689999999865332100 0001111111 2345556666655 49999
Q ss_pred EEEeeccCCccceeee-eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235 94 VQSSLFIPRMNAITGN-YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172 (323)
Q Consensus 94 ~C~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 172 (323)
+|.+.+..+...+.+. +.+.+. ..+.+|++++|.|.+.+.+ .+.+.|++++..+. .....|.|.+
T Consensus 83 ~C~~~n~~~~~~l~V~~~~~~~~-~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~----------~~~~~L~i~~ 148 (363)
T 1wio_A 83 ICEVEDQKEEVQLLVFGLTANSD-THLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNI----------QGGKTLSVSQ 148 (363)
T ss_dssp EEEETTEEEEEEEEEEEEEESSC-SSEESBSCEEEEEECCTTC---CCCEEEECSSSCEE----------EESSEEEECS
T ss_pred EEEEEECCCcEEEEEEeCCCCCc-eEEecCCCEEEEEEcCCCC---CCeEEEEcCCCccc----------ccceEEEEee
Confidence 9999877544333322 222333 3467899999999998876 78999999876553 3567899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeee
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYF 247 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~ 247 (323)
+..+|+|.|+|.+ .+. .......+.+.|..+|... ....+.+|+.+.|.|.+.+ +|.|.+.|+++|..+.
T Consensus 149 v~~~d~G~Y~C~a-~~~--~~~~~~~~~l~v~~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~ 223 (363)
T 1wio_A 149 LELQDSGTWTCTV-LQN--QKKVEFKIDIVVLAFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223 (363)
T ss_dssp BCGGGCEECEEEE-EET--TEEEEECCEECEECCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCC
T ss_pred CChhcCCEEEEEE-ecC--CCeEEEEEEEEEecCCCCC--CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCcc
Confidence 9999999999999 555 2233444555665544432 4556788999999998877 7788999999998765
Q ss_pred cc-------CCeeeeecCCC------CCCcceeEEEeecCcCCCeEEEEEEeec--ccCCCCCceeEEEEEEc
Q psy15235 248 RS-------QGRIKLSEHPE------KGTANSVLQIDEATMADRGNYYCHGNNV--ATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 248 ~~-------~~~~~~~~~~~------~~~~~~~L~i~~v~~~d~G~y~C~a~n~--~g~~~~~~~~~~~l~v~ 305 (323)
.. +.++.+..... .......|+|.++..+|+|.|+|.|.|. .|. ....+.|.|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~----~~~~~~l~V~ 292 (363)
T 1wio_A 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK----LHQEVNLVVM 292 (363)
T ss_dssp CCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC----EEEEEEEEEE
T ss_pred ceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe----EEEEEeEEEE
Confidence 42 34443321000 0112458999999999999999999999 865 6666666665
No 30
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=220.35 Aligned_cols=259 Identities=13% Similarity=0.109 Sum_probs=162.9
Q ss_pred EEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235 26 TYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP 101 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~ 101 (323)
..+.++.|.+|+++.|.|. +.|.+.+.|++++..+...... .........|.|.+++. +|.|+|.+.+..
T Consensus 53 ~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~------~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 126 (423)
T 3qs7_E 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF------DLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126 (423)
T ss_dssp ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred eccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCcccee------ccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence 3445788999999999999 4567899999988766542110 01112334577777654 999999999987
Q ss_pred CccceeeeeeeC-------CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-ccCcEEeceeEEEEeee
Q psy15235 102 RMNAITGNYDIE-------PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-LSGRLTQSKDSITIRKT 173 (323)
Q Consensus 102 ~~~~~~~~~~~~-------~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~ 173 (323)
+.......+.+. ........|+.+.|.|.+.|.| .+.|+|++++..+..... ........... +
T Consensus 127 g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P---~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~-----l 198 (423)
T 3qs7_E 127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP---EPIVEWVLCDSQGESCKEESPAVVKKEEKV-----L 198 (423)
T ss_dssp CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESS---CCEEEEEEC-------------CEEECCSE-----E
T ss_pred CcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeec---CCeEEEEECCCCCccccccccccccccceE-----E
Confidence 765444444442 2223355688889999999988 789999998875432000 00011111111 1
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCe
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGR 252 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~ 252 (323)
...|+|.|+|.| .|..+... ...+.|.|..+|.. .+....+.+|+.+.|.|.+.| .|.+.+.|++++..+.... .
T Consensus 199 ~~~d~G~Y~C~A-~N~~G~~~-~~~~~l~V~~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~-~ 274 (423)
T 3qs7_E 199 HELFGTDIRCCA-RNELGREC-TRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN-Y 274 (423)
T ss_dssp CCCCSSCEEEEE-ECSSCEEE-EECEEEESSSCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGG-E
T ss_pred ecccCeEEEEEE-EcCCCCcc-eeeEEEEEecCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccc-e
Confidence 568999999999 77743321 23455666555544 233667889999999999998 6779999999998775321 1
Q ss_pred eeeecC-CC-CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 253 IKLSEH-PE-KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 253 ~~~~~~-~~-~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
+..... .. ......+|.|.+++.+|+|.|+|.|.|. ....+.|.|..+|.
T Consensus 275 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-------~~~~~~L~V~~~p~ 326 (423)
T 3qs7_E 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-------PSQSALVTIVEKGF 326 (423)
T ss_dssp EEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-------EEEEEEEEEESSCE
T ss_pred eecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-------CCceEEEEEEeCCc
Confidence 100000 00 0113467999999999999999999987 23566666665543
No 31
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.97 E-value=1.8e-29 Score=229.05 Aligned_cols=234 Identities=21% Similarity=0.320 Sum_probs=173.7
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM 103 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~ 103 (323)
+....+.+|+.+.|.|.+ .|.+.++|+++|..+... . .|.|.++ .|+|.|+|.+.+..+.
T Consensus 388 ~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~--------------~--~L~i~~~~~~d~G~Y~C~a~n~~g~ 451 (642)
T 1e07_A 388 PSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------------Q--ELFISNITEKNSGLYTCQANNSASG 451 (642)
T ss_pred CCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC--------------c--eEEEccCChhhCeEEEEEEEcCCCC
Confidence 345678899999999994 567899999998766542 1 2444444 4599999999987654
Q ss_pred cc----eeeeeee---C-----CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEE
Q psy15235 104 NA----ITGNYDI---E-----PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSIT 169 (323)
Q Consensus 104 ~~----~~~~~~~---~-----~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~ 169 (323)
.. +...+.. . .....+.+|+.++|.|.+.+ + .+.+.|+++|..+.. ..++. .....|.
T Consensus 452 ~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~---~~~i~W~~~g~~l~~----~~~~~~~~~~~~L~ 523 (642)
T 1e07_A 452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-Q---NTTYLWWVNGQSLPV----SPRLQLSNGNRTLT 523 (642)
T ss_pred CcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-C---CcEEEEEECCEeCCC----CCcEEEcCCCcEEE
Confidence 32 1111111 1 11233668999999999984 4 679999999998876 45554 3456899
Q ss_pred EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-ee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
|.++..+|+|.|+|.+ .|..+. ..+..+.|.|..+|. +. .+....+.+|+.+.|.|.+.|.|++.+.|+++|..+.
T Consensus 524 i~~v~~~d~G~Y~C~a-~n~~g~-~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~ 601 (642)
T 1e07_A 524 LFNVTRNDARAYVCGI-QNSVSA-NRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ 601 (642)
T ss_pred EeecChhcCceEEEEe-EcCCCC-ccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECc
Confidence 9999999999999999 676433 233457788876543 32 3456778899999999999999999999999998764
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
. ...|.|.++..+|+|.|+|.|.|..|. .+.+..+.|.|.
T Consensus 602 ~----------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~--~~~s~~l~V~v~ 641 (642)
T 1e07_A 602 H----------------TQVLFIAKITPNNNGTYACFVSNLATG--RNNSIVKSITVS 641 (642)
T ss_pred c----------------CceEEECcccccCCeEEEEEEEecccC--cceeEEEEEEEc
Confidence 2 357999999999999999999999977 334444444443
No 32
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.97 E-value=1.1e-30 Score=231.56 Aligned_cols=249 Identities=15% Similarity=0.177 Sum_probs=177.9
Q ss_pred eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCccce
Q psy15235 29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~~~~ 106 (323)
....+.+|++++|.|.+.+ .++|++++..+. . . .....|.|.++ .|+|.|+|.+.+ +. ..
T Consensus 44 ~~~~v~~G~~v~l~C~~~~--~v~W~~~~~~~~-~----------~--~~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~ 105 (524)
T 2ec8_A 44 SDLIVRVGDEIRLLCTDPG--FVKWTFEILDET-N----------E--NKQNEWITEKAEATNTGKYTCTNKH--GL-SN 105 (524)
T ss_dssp SEEECCTTSCEEEEEECTT--EEEEEEESSSCC-E----------E--ECSSEEEESSCCSTTCEEEEEEETT--SC-EE
T ss_pred ceEEEeCCCeEEEEEeCCc--eEEEcCCCcccc-c----------c--CccceEEEcccchhhCEEEEEeecC--Cc-ce
Confidence 4567899999999999776 999999998662 1 1 22344555555 459999999988 21 22
Q ss_pred eeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeecC
Q psy15235 107 TGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTVD 176 (323)
Q Consensus 107 ~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~ 176 (323)
...+.+ .+....+.+|+.++|.|.+.+.+ .+.+.|++ +|..+.. ..++. .....|.|.+++.+
T Consensus 106 ~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~---~~~v~W~~~~g~~l~~----~~~~~~~~~~~L~i~~~~~~ 178 (524)
T 2ec8_A 106 SIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQGKPLPK----DLRFIPDPKAGIMIKSVKRA 178 (524)
T ss_dssp EEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCC---CSCEEEECSSSCCCCS----SCEEEEETTTEEEEESCCGG
T ss_pred EEEEEECCCCcccccccceEEEcCCeEEEECcCCCCc---cceEEEEccCCcCcCC----CCceeECCCccEEEeccchh
Confidence 222222 23334477899999999998855 58999998 7877765 45554 45668999999999
Q ss_pred CCe-eEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeee--e
Q psy15235 177 DAG-QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTY--F 247 (323)
Q Consensus 177 d~G-~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~--~ 247 (323)
|+| .|+|.+ .+..+. ..+..+.|.|. .+|.+. .+....+.+|+.+.|.|.+.|.|.+. +.|++++..+ .
T Consensus 179 d~G~~Y~C~a-~n~~~~-~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~ 256 (524)
T 2ec8_A 179 YHRLCLHCSV-DQEGKS-VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256 (524)
T ss_dssp GTTCEEEEEE-C----C-CCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCC
T ss_pred hCCceEEEEE-EECCce-EEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccc
Confidence 999 999999 666322 23446777776 466665 34456789999999999999998886 9999999873 2
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.. .+..+.. .........|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 257 ~~-~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~ 313 (524)
T 2ec8_A 257 EK-YNSWHHG-DFNYERQATLTISSARVNDSGVFMCYANNTFGS----ANVTTTLEVVDKGFI 313 (524)
T ss_dssp EE-EEEEECS-SSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE----EEEEEEEEEESSCEE
T ss_pred cc-ccccccc-CCccceEEEEEECCCCHHHCEEEEEEEEecCCc----eEEEEEEEEeccCce
Confidence 11 1111110 001124689999999999999999999999865 667888888766544
No 33
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.97 E-value=9.3e-30 Score=212.54 Aligned_cols=268 Identities=12% Similarity=0.139 Sum_probs=173.4
Q ss_pred CceEEEeeceEEecCCcEEEEEEecc------CceEEEEEcCccceee----c---------cCcceEEEeeeeCCeEEE
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILTI------FEQVKWQLNGRNINQS----S---------VDSGFAATANLTEDNFKY 82 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~----~---------~~~~~~~~~~~~~~~~~l 82 (323)
...+..+.++.+.+|++++|.|.+.. .+.+.|++++...... . ...++....+.......|
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 33455667788999999999999432 3479999965321110 0 011111111222334456
Q ss_pred EEeecc--cCcceEEEeec-cCCccceeeeeee----------CCceeEEecC---CcEEEEEE-eecCCCCCCceEEEE
Q psy15235 83 SIHEAI--LESGYVQSSLF-IPRMNAITGNYDI----------EPKYKVFEYR---VPFTLKCN-VTSPPPGDDYQIVWY 145 (323)
Q Consensus 83 ~i~~~~--~~G~Y~C~~~~-~~~~~~~~~~~~~----------~~~~~~~~~g---~~v~l~C~-~~~~~~~~~~~i~W~ 145 (323)
.|.+++ |+|.|+|.+.. ..+.......+.+ .+....+.+| +.++|.|. ..+.| .+.+.|+
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p---~~~i~W~ 171 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP---PSVVSWE 171 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS---CCEEEEE
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcC---CceEEEE
Confidence 666654 49999999543 3333222222222 2222335567 77999998 67777 7899999
Q ss_pred ECCeeccc--cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCC
Q psy15235 146 KGNKSITE--ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGE 221 (323)
Q Consensus 146 ~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~ 221 (323)
+++..... ..............|.|.++..+|+|.|+|.+ .+.. ......+.|.|..+|.+.. +....+.+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~--~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~ 248 (331)
T 3u83_A 172 TRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV-NYHM--DRFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248 (331)
T ss_dssp ESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEE-EETT--EEEEEEEECCEEEEEEEEEECCCSCCBTTCC
T ss_pred cCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEE-ecCC--CcceeeEEEEEecCCeEEEecCCCceEeCCC
Confidence 96332211 00001111123456888888999999999999 6663 3356777888888786653 2234577899
Q ss_pred eEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEe-ecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235 222 KLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID-EATMADRGNYYCHGNNVATRNSQPNEAF 299 (323)
Q Consensus 222 ~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~v~~~d~G~y~C~a~n~~g~~~~~~~~~ 299 (323)
.+.|.|.+.|+|.|. +.|++++..+... ... ...+|.|. ++..+|+|.|+|.|.|..|. ....
T Consensus 249 ~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~~~--------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~----~~~~ 313 (331)
T 3u83_A 249 DVKLTCKADANPPATEYHWTTLNGSLPKG---VEA--------QNRTLFFKGPINYSLAGTYICEATNPIGT----RSGQ 313 (331)
T ss_dssp CEEEEEEEEEESCCCEEEEEETTBSCCTT---EEE--------ETTEEEECSCCCGGGCEEEEEEEEETTEE----EEEE
T ss_pred eEEEEEeCcCCCCCCEEEEEECCCccccc---cee--------cCcEEEEeCCCccccCeEEEEEEEecccc----ceEE
Confidence 999999999999998 9999999877432 112 25789999 99999999999999999966 7889
Q ss_pred EEEEEcceecC
Q psy15235 300 VYVRVKGKSFG 310 (323)
Q Consensus 300 ~~l~v~~~~~~ 310 (323)
+.|.|.+++..
T Consensus 314 ~~l~V~~~~~~ 324 (331)
T 3u83_A 314 VEVNITEAAAL 324 (331)
T ss_dssp EEECCBC----
T ss_pred EEEEEeccchh
Confidence 99999887654
No 34
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.97 E-value=2.1e-30 Score=222.32 Aligned_cols=261 Identities=19% Similarity=0.286 Sum_probs=180.6
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe--ec--ccCcceEEEeeccC
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH--EA--ILESGYVQSSLFIP 101 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~--~~--~~~G~Y~C~~~~~~ 101 (323)
+.+..+.+|++++|.|.+ .|.+.++|+|+|..+...... ........+.+.+.+. ++ .|+|.|+|.+.+..
T Consensus 24 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~ 100 (404)
T 3p3y_A 24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP---RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKF 100 (404)
T ss_dssp CTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCS---SCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSS
T ss_pred CccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCC---cceEecCCceEEEEeccCCCCccCCEEEEEEEEcCC
Confidence 566789999999999994 466799999999877543111 1111122343433321 33 45999999999876
Q ss_pred Cccc-eeeeeee---------CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235 102 RMNA-ITGNYDI---------EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT 169 (323)
Q Consensus 102 ~~~~-~~~~~~~---------~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~ 169 (323)
+... ....+.+ ......+.+|+.++|.|.+ .+.+ .+.+.|++++..... ...++. .....|.
T Consensus 101 g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~~~~---~~~~~~~~~~~~l~ 174 (404)
T 3p3y_A 101 GTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLP---SPVIFWMSSSMEPIT---QDKRVSQGHNGDLY 174 (404)
T ss_dssp CEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSS---CCEEEEECTTSCBCC---CCSSEEECTTSCEE
T ss_pred CeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCC---CCeEEEeCCCccccC---CCCcEEEcCCCcEE
Confidence 5542 2222222 1223457789999999998 5555 689999998754332 133443 4566899
Q ss_pred EeeeecCC-CeeEEEEEEcCCCCCC-CCceeeeeEEEec-------ceeee----eceeEEeeCCeEEEEEEEecCCCCc
Q psy15235 170 IRKTTVDD-AGQYSCRLIDPKSTNT-TPLAQADFDVIMK-------PTAKL----VETLTVIEGEKLRLECLVVGSPPPT 236 (323)
Q Consensus 170 i~~~~~~d-~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~-------p~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~ 236 (323)
|.++..+| +|.|+|.+ .+..+.. .....+.+.+... |.+.. +....+.+|+.+.|.|.+.|+|.+.
T Consensus 175 i~~v~~~d~~G~Y~C~a-~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~ 253 (404)
T 3p3y_A 175 FSNVMLQDMQTDYSCNA-RFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD 253 (404)
T ss_dssp ESSCCSGGGSSCBEEEE-ECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCE
T ss_pred EEeeeeccCCcceEEEE-EeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCc
Confidence 99999999 59999999 6653321 2233455555432 22221 1245688899999999999999999
Q ss_pred EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 237 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
+.|++++..+......+.. ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 254 v~W~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~ 315 (404)
T 3p3y_A 254 IAWYKKGGDLPSDKAKFEN--------FNKALRITNVSEEDSGEYFCLASNKMGS----IRHTISVRVKAAPYW 315 (404)
T ss_dssp EEEEETTBCCCTTTEEEEG--------GGTEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEEEEEE
T ss_pred EEEEECCEECCCCcccccc--------cCceEEEccCCHhHCEEEEEEEEeCCCc----EEEEEEEEEeCCCee
Confidence 9999999887644333222 3678999999999999999999999965 778888888877643
No 35
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.97 E-value=1.4e-29 Score=210.13 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=165.5
Q ss_pred CceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeecc
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFI 100 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~ 100 (323)
.+.+.......+.+|++++|.|.+.+ .+.+.|+|+|..+.... ........+.|.-....|+|.|+|.+.+.
T Consensus 24 ~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 96 (316)
T 3vh8_G 24 KPFLSAWPSAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIF-------HGRIFQESFNMSPVTTAHAGNYTCRGSHP 96 (316)
T ss_dssp CCEEEEESCSEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHH-------HHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred CCEeeccCCCccCCCCCEEEEEEccCCCceEEEEeCCCccceee-------cCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence 44454444467889999999999543 57899999998754420 00112344444444455699999998753
Q ss_pred CCc-------cceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--
Q psy15235 101 PRM-------NAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-- 162 (323)
Q Consensus 101 ~~~-------~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-- 162 (323)
... ..+.. .+...+... +.+|+.++|.|.+.+ + .+.+.|++++..+..... .....
T Consensus 97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~~~ 170 (316)
T 3vh8_G 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-M---FEHFFLHKEGISKDPSRL-VGQIHDG 170 (316)
T ss_dssp SSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-C---CSEEEEEETTCCSCCEEE-ECEEETT
T ss_pred CCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-C---CcEEEEEECCCcccccee-eeeecCC
Confidence 211 11111 111222222 678999999999954 3 468999999987643100 11111
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCc
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 236 (323)
.....|.|.+++.+|+|.|+|.+ .|..+. ...+..+.|.|.. +|.+...+...+.+|+.++|.|.+. .|.+.
T Consensus 171 ~~~~~L~i~~v~~~D~G~Y~C~a-~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~~~ 248 (316)
T 3vh8_G 171 VSKANFSIGPMMLALAGTYRCYG-SVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDM 248 (316)
T ss_dssp EEEEEEEECSCCGGGCEEEEEEE-ECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCCSE
T ss_pred CceEEEEECCCChhhCceEEEEE-ecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCCcE
Confidence 35678999999999999999999 666432 1224556666653 4566655555678999999999997 47789
Q ss_pred EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEccee
Q psy15235 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKS 308 (323)
Q Consensus 237 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~ 308 (323)
+.|+++|..+........ ...+.....|.|.+++ |+|.|+|.|.|..+.. ....+..+.|.|.++|
T Consensus 249 ~~W~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 249 YHLSREGGAHERRLPAVR----KVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp EEEEETTSSCCEEEECEE----CTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred EEEEECCCcCCCceecee----ccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 999999976642211111 1111134789999999 9999999999977531 2346778888888876
No 36
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.97 E-value=9.7e-30 Score=212.13 Aligned_cols=268 Identities=12% Similarity=0.158 Sum_probs=160.3
Q ss_pred eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec--cC----cceEEEeee---eCCeEEEEEeecc--cCcce
Q psy15235 28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS--VD----SGFAATANL---TEDNFKYSIHEAI--LESGY 93 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~--~~----~~~~~~~~~---~~~~~~l~i~~~~--~~G~Y 93 (323)
+.++.+.+|++++|.|.+. |.+.++|+|++....... .. .+.....+. ......|.|.+++ |+|.|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 89 (327)
T 2wng_A 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY 89 (327)
T ss_dssp CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence 5678899999999999954 457899999886543210 00 011111110 0334456666665 59999
Q ss_pred EEEeeccCCcc-------ceeeeeeeCCce-------eEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc---
Q psy15235 94 VQSSLFIPRMN-------AITGNYDIEPKY-------KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--- 156 (323)
Q Consensus 94 ~C~~~~~~~~~-------~~~~~~~~~~~~-------~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~--- 156 (323)
+|.+.+..+.. .....+...+.. ..+.+|+.+.|.|.+.+.+|. ...+.|+++|..+.....
T Consensus 90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~-~~~v~W~k~g~~l~~~~~~~~ 168 (327)
T 2wng_A 90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPR-DITLKWFKNGNELSDFQTNVD 168 (327)
T ss_dssp EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSS-CCEEEEEETTEECCCEEEEEE
T ss_pred EEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCC-CcEEEEEECCEEccccccccc
Confidence 99998865431 111111111111 225679999999999987741 139999999988865110
Q ss_pred ---ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC-CCceeeee--EEEecceeeeeceeEEeeCCeEEEEEEEe
Q psy15235 157 ---LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-TPLAQADF--DVIMKPTAKLVETLTVIEGEKLRLECLVV 230 (323)
Q Consensus 157 ---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~g~~~~l~C~~~ 230 (323)
....+ .....|.|.....+|.|.|+|.+ .|..+.. .......+ .+..+|.+...... +.+|+.+.|.|.+.
T Consensus 169 ~~~~~~~~-~~~s~L~i~~~~~d~~g~Y~C~a-~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~~ 245 (327)
T 2wng_A 169 PVGESVSY-SIHSTAKVVLTREDVHSQVICEV-AHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQVR 245 (327)
T ss_dssp CSSCCSCE-EEEEEEEEECCTTGGGCEEEEEE-ECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEEE
T ss_pred cccCCCce-EEEEEEEEechhcCcCceEEEEE-eccccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEEc
Confidence 00111 22345777777677789999999 6764331 12223333 45567776644333 77899999999999
Q ss_pred cC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEE
Q psy15235 231 GS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303 (323)
Q Consensus 231 g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~ 303 (323)
|. |++ .+.|++||..+.......... ..++ ....+.|.|.++..+|.|.|+|.|.|..|. .....+.+.
T Consensus 246 g~~p~~~~v~W~k~g~~l~~~~~~~~~~-~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~---~~s~~~~~~ 317 (327)
T 2wng_A 246 KFYPQRLQLTWLENGNVSRTETASTVTE-NKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP---AVSKSHDLK 317 (327)
T ss_dssp EEBSSCEEEEEEETTEEEEEEECCSCEE-CTTSCEEEEEEEEC-------CCEEEEEEEETTCC---CEEEEEECC
T ss_pred cccCCCcEEEEEECCeEccCcccCceEE-CCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCC---CchhheEEE
Confidence 85 444 799999999876431111111 0111 112367999999999999999999999965 244444443
No 37
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=201.74 Aligned_cols=255 Identities=13% Similarity=0.135 Sum_probs=161.6
Q ss_pred eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeee-CCeEEEEEeecc--cCcceEEEeeccCCc--
Q psy15235 29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLT-EDNFKYSIHEAI--LESGYVQSSLFIPRM-- 103 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~--~~G~Y~C~~~~~~~~-- 103 (323)
..+.+.+|++++|.|.+.+. ++|++++..+... ...... .....|.|.+++ |+|.|+|.+.+..+.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~ 78 (289)
T 3mjg_X 8 PELVLNVSSTFVLTCSGSAP--VVWERMSQEPPQE-------MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET 78 (289)
T ss_dssp SEEECCTTCCEEEEEEESSC--CEEEBTTBCCSEE-------EEECTTSCEEEEEEECSCCGGGCEEEEEECCC------
T ss_pred CeEEEeCCCcEEEEEeccce--EEEECCCCCcccc-------eeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCc
Confidence 34678999999999997765 9999999887432 111111 113456666655 499999999886644
Q ss_pred -cceeeeeeeC-Cc--------e---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235 104 -NAITGNYDIE-PK--------Y---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170 (323)
Q Consensus 104 -~~~~~~~~~~-~~--------~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 170 (323)
......+.+. +. . ..+.+|+.+.|.|.+. .+ .+.+.|++++..... ...+... ..+.
T Consensus 79 ~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p---~~~v~w~~~~~~~~~----~~~~~~~-~~~~- 148 (289)
T 3mjg_X 79 DERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DP---QLVVTLHEKKGDVAL----PVPYDHQ-RGFS- 148 (289)
T ss_dssp CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CT---TSCEEEEESSCCSCC----CCCEETT-TEEE-
T ss_pred CcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CC---CceEEEEeCCCCCcc----ceeecCC-cCee-
Confidence 1222222221 11 1 4477899999999998 45 568888886522221 1111111 1111
Q ss_pred eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe--cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM--KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
...|+|.|+|.+ .+..+. .....+.+.|.. +|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++....
T Consensus 149 ---~~~d~G~Y~C~a-~n~~~~-~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~ 223 (289)
T 3mjg_X 149 ---GIFEDRSYICKT-TIGDRE-VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESG 223 (289)
T ss_dssp ---ECCCSSEEEEEE-EETTEE-EECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSS
T ss_pred ---eeccCcEEEEEE-EeCCce-eeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCC
Confidence 357999999999 544221 223334566654 45444 3345678899999999999999999999998776543
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
....................|.|.++..+|+|.|+|.|.|..|. ....+.|.|.+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND----HQDEKAINITVVESGH 283 (289)
T ss_dssp CCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT----EEEEEEEEEEEEC---
T ss_pred CcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC----ceeEEEEEEEEEecCc
Confidence 21111111100101224689999999999999999999999966 7888888887776553
No 38
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.97 E-value=1.3e-28 Score=223.41 Aligned_cols=250 Identities=16% Similarity=0.228 Sum_probs=179.9
Q ss_pred eceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc-e
Q psy15235 29 GDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA-I 106 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~-~ 106 (323)
....+..|+++.|.|.+.+ ++.+.|+++|..+... ..+......+.+.|.-....|+|.|+|.+.+..+... .
T Consensus 297 ~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~ 371 (642)
T 1e07_A 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVS-----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD 371 (642)
T ss_pred CceeEecCCcEEEEEECCCCCccEEEEECCccCCCc-----CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee
Confidence 3344566888999999543 3689999999887553 1122222234444444444559999999998766431 1
Q ss_pred eeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235 107 TGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD 177 (323)
Q Consensus 107 ~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 177 (323)
...+.+ .+....+..|+.++|.|.+.+.| .+.+.|+++|..+.. ...|.|.++..+|
T Consensus 372 ~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~i~W~~~g~~~~~-----------~~~L~i~~~~~~d 437 (642)
T 1e07_A 372 PVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP---PAQYSWLIDGNIQQH-----------TQELFISNITEKN 437 (642)
T ss_pred eEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccC---CCeEEEEECCEEcCC-----------CceEEEccCChhh
Confidence 111111 23334567899999999999988 689999999988754 3569999999999
Q ss_pred CeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeee
Q psy15235 178 AGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254 (323)
Q Consensus 178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 254 (323)
+|.|+|.| .|..+....+..+.+.|.. +|.+.......+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.
T Consensus 438 ~G~Y~C~a-~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~-~~~~ 514 (642)
T 1e07_A 438 SGLYTCQA-NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVS-PRLQ 514 (642)
T ss_pred CeEEEEEE-EcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCC-CcEE
Confidence 99999999 7876555555556666654 4566555566788999999999998 478899999999988643 4444
Q ss_pred eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
+.. ....|+|.++..+|+|.|+|.|.|..|. .....+.|.|...|.
T Consensus 515 ~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~~p~ 560 (642)
T 1e07_A 515 LSN------GNRTLTLFNVTRNDARAYVCGIQNSVSA---NRSDPVTLDVLYGPD 560 (642)
T ss_pred EcC------CCcEEEEeecChhcCceEEEEeEcCCCC---ccCCCEEEEEEeCCC
Confidence 431 2568999999999999999999999965 123356777765544
No 39
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.97 E-value=5.9e-29 Score=231.63 Aligned_cols=256 Identities=17% Similarity=0.280 Sum_probs=181.9
Q ss_pred ceEEecCCcEEEEEEe--ccCceEEEEEcCcccee--eccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc
Q psy15235 30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQ--SSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA 105 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~ 105 (323)
...+.+|+++.|.|.+ .|.+.+.|+|++..... ....... .....+.+.|.-....|+|.|+|.+.+..+...
T Consensus 257 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 333 (816)
T 3dmk_A 257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDR---VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333 (816)
T ss_dssp EEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSS---EEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred ceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCc---eEeccceEEECCCCHhHCEEEEEEEEcCCCceE
Confidence 4567899999999994 46789999996543322 1111111 112244444444444559999999998776543
Q ss_pred eeeeee--------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235 106 ITGNYD--------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD 177 (323)
Q Consensus 106 ~~~~~~--------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 177 (323)
....+. ..+....+..|++++|.|.+.+.+ .+.+.|+++|..+.. ....|.|.+++.+|
T Consensus 334 ~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~g~~~~~----------~~~~L~i~~v~~~d 400 (816)
T 3dmk_A 334 VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP---IKTVSWMKDGKAIGH----------SESVLRIESVKKED 400 (816)
T ss_dssp EEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEEC---CCEEEEEETTEECSC----------CSSEEEESSCCGGG
T ss_pred EEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccC---CCEEEEEECCEECCC----------CCCEEEEcCCCHHH
Confidence 222222 244455577899999999999887 789999999998865 34679999999999
Q ss_pred CeeEEEEEEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee
Q psy15235 178 AGQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253 (323)
Q Consensus 178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~ 253 (323)
+|.|+|.+ .+..+ .......+.|. .+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++
T Consensus 401 ~G~Y~C~a-~n~~g--~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~-~~~ 476 (816)
T 3dmk_A 401 KGMYQCFV-RNDRE--SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRY 476 (816)
T ss_dssp CEEEEEEE-ECSSC--EEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC-TTE
T ss_pred CEEEEEEE-ECCCC--cEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC-CCc
Confidence 99999999 67633 23344445543 355555 344567889999999999999999999999999887643 233
Q ss_pred eeec-CCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 254 KLSE-HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 254 ~~~~-~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
.... ....+...+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|.+.|.
T Consensus 477 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~ 529 (816)
T 3dmk_A 477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV----AEHSAKLNVYGLPY 529 (816)
T ss_dssp EEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEE----EEEEEEEEECSSCE
T ss_pred ccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCe----EEEEEEEEEecCCe
Confidence 2211 0112223567999999999999999999999966 77888888887663
No 40
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.97 E-value=3.3e-29 Score=214.24 Aligned_cols=266 Identities=16% Similarity=0.222 Sum_probs=176.7
Q ss_pred EeeceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccC
Q psy15235 27 YFGDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIP 101 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~ 101 (323)
.+.++.+.+|+.++|.|.+ .+.+.++|+|+|..+..... ........+ .|.|.++ .|+|.|+|.+.+..
T Consensus 12 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~----~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~ 85 (395)
T 1bih_A 12 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH----NAALRKDEG--SLVFLRPQASDEGHYQCFAETPA 85 (395)
T ss_dssp CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT----TEEECTTSC--CEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc----eEEEecCCc--eEEEecCCCCCCcEEEEEEEeCC
Confidence 3566789999999999994 35689999999988766411 111122233 4555554 45999999998865
Q ss_pred Cccc-----eeeeeeeCC----ceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECC---eeccccccccCcEE-eceeE
Q psy15235 102 RMNA-----ITGNYDIEP----KYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGN---KSITEATELSGRLT-QSKDS 167 (323)
Q Consensus 102 ~~~~-----~~~~~~~~~----~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~---~~~~~~~~~~~~~~-~~~~~ 167 (323)
+... +...+...+ ....+.+|+.+.|.|.+ .+.+ .+.+.|++++ .+.........++. .....
T Consensus 86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (395)
T 1bih_A 86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP---KPLITWKKRLSGADPNADVTDFDRRITAGPDGN 162 (395)
T ss_dssp EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEES---CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSC
T ss_pred CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCC---CCeEEEEecCCCcCcccccccccccEEEcCCCc
Confidence 4431 111111122 22335689999999996 6666 6899999986 22211111133443 44568
Q ss_pred EEEeeeecCCCe---eEEEEEEcCCCCCCCCceee-eeEEEe----------cceeeeeceeEEeeCCeEEEEEEEecCC
Q psy15235 168 ITIRKTTVDDAG---QYSCRLIDPKSTNTTPLAQA-DFDVIM----------KPTAKLVETLTVIEGEKLRLECLVVGSP 233 (323)
Q Consensus 168 l~i~~~~~~d~G---~y~C~~~~~~~~~~~~~~~~-~l~v~~----------~p~~~~~~~~~~~~g~~~~l~C~~~g~p 233 (323)
|.|.++..+|+| .|+|.+ .+..+........ .+.+.. .|.+ .+....+.+|+.+.|.|.+.|+|
T Consensus 163 L~i~~v~~~d~G~~~~Y~C~a-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p 240 (395)
T 1bih_A 163 LYFTIVTKEDVSDIYKYVCTA-KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNP 240 (395)
T ss_dssp EEEEEECGGGCCSSEEEEEEE-ECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSS
T ss_pred EEEEEEeeccCCCceEEEEEE-EecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCC
Confidence 999999999999 999999 6764332111111 111111 2222 23456788999999999999999
Q ss_pred CCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee-EEEEEEcceecCc
Q psy15235 234 PPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA-FVYVRVKGKSFGY 311 (323)
Q Consensus 234 ~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~-~~~l~v~~~~~~~ 311 (323)
.+.+.|++++..+.... .++... .......|.|.++..+|+|.|+|.|.|..|. ... .+.|.|..+|...
T Consensus 241 ~~~i~W~~~g~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~~l~V~~~P~~~ 312 (395)
T 1bih_A 241 MGYPNYFKNGKDVNGNPEDRITRH----NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK----PQKHSLKLTVVSAPKYE 312 (395)
T ss_dssp CCCCEEEETTEECCCCTTSSEESC----SSSTTSEEEESSCCGGGCEEEEEEECCSSSS----CEEEEEEEEEEEEEEEE
T ss_pred CCeEEEEECCEEcCCCCceeEEEE----ecCCCceEEEccCChhhCEEEEEEEEeCCCC----ceEEEEEEEEEcCCccc
Confidence 99999999998875432 222211 1113458999999999999999999999865 444 7888887776543
No 41
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=207.87 Aligned_cols=257 Identities=16% Similarity=0.165 Sum_probs=172.0
Q ss_pred eeceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCccc
Q psy15235 28 FGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNA 105 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~ 105 (323)
+..+.+.+|++++|.|.+.+. +.|++++...... ........|.|.+++. +|.|+|.+.+..+...
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~ 78 (292)
T 4dkd_C 11 VPELVVKPGATVTLRCVGNGS--VEWDGPPSPHWTL----------YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS 78 (292)
T ss_dssp CSSCEECTTCCEEEEEECSSC--CCBCCCCCSSCEE----------CCBTTEEEEEESSCCGGGCSCEEECCCC----CC
T ss_pred CCeEEEcCCCcEEEEEcCCCc--eEEccCCCCceEE----------eccCceEEEEEcccccccCEEEEEEEccCCCCcc
Confidence 356789999999999997664 9999765432211 1223345677776654 9999999987654433
Q ss_pred eeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE-eceeEEEEeeee
Q psy15235 106 ITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT-QSKDSITIRKTT 174 (323)
Q Consensus 106 ~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~-~~~~~l~i~~~~ 174 (323)
....+.+ .+....+.+|+.+.|.|.+.+..+ .+.+.|+++ +..+.. ..++. .....|.|.++.
T Consensus 79 ~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~ 152 (292)
T 4dkd_C 79 AAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL--EAGVSLVRVRGRPLMR----HTNYSFSPWHGFTIHRAK 152 (292)
T ss_dssp EEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGG--GSSEEEEEGGGCCCCS----SCCEECCSSSCCEETTCC
T ss_pred eEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCc--ceeEEEEecCCCcccc----CCcccccCCceEEECCCC
Confidence 2222222 333445778999999999987331 268999997 555544 34443 334559999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceeeee-ceeEEeeCCeEEEEEEEecCCC-CcEEEEECCeeeec
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAKLV-ETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFR 248 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~~~-~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~ 248 (323)
.+|+|.|+|.+ .+..+. ..+..+.|.|.. +|.+... ....+.+|+.+.|.|.+.+.|+ +.+.|++++..+..
T Consensus 153 ~~d~G~Y~C~a-~n~~~~-~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~ 230 (292)
T 4dkd_C 153 FIQSQDYQCSA-LMGGRK-VMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI 230 (292)
T ss_dssp GGGCSEEEEEE-CSTTSC-EECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCC
T ss_pred HHHCeEEEEEE-EeCCCc-eeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCccccc
Confidence 99999999999 665322 234567788876 6766643 3445578999999999988765 46889888876543
Q ss_pred cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
... .... .......+.|+|.++..+|+|.|+|.|.|..|. ....+.|.|.++....
T Consensus 231 ~~~-~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 231 PQQ-SDFH--NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK----HSTSMFFRVVESAGNS 286 (292)
T ss_dssp CBE-EEEE--TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE----EEEEEEECC-------
T ss_pred Ccc-ceec--cceeeeEEEEEECccChhcCeEEEEEEecCCCC----ceeEEEEEEeeCCCcc
Confidence 221 1111 000113468999999999999999999999965 8888999888876554
No 42
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.97 E-value=5.6e-31 Score=220.71 Aligned_cols=264 Identities=15% Similarity=0.231 Sum_probs=179.1
Q ss_pred EEEeeceEEecCCcEEEEEEec---------cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEE
Q psy15235 25 ITYFGDTEIMEGAPINISCILT---------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQ 95 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~---------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C 95 (323)
...+..+.+.+|++++|.|.+. +.+.+.|+++|..+.......... ....+.+.|......|+|.|+|
T Consensus 22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C 98 (339)
T 3o4o_C 22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM---WAQDGALWLLPALQEDSGTYVC 98 (339)
T ss_dssp EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---EEETTEEEESSBCTTCCEEEEC
T ss_pred CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---EeeCCeEEECCCCcccCEEEEE
Confidence 3445678899999999999964 346899999998753321111111 1234444444444455999999
Q ss_pred EeeccCCccceeeeeee--CC--------ceeEEecCCcEEEEEE-----eecCCCCCCceEEEEECCeeccccccccCc
Q psy15235 96 SSLFIPRMNAITGNYDI--EP--------KYKVFEYRVPFTLKCN-----VTSPPPGDDYQIVWYKGNKSITEATELSGR 160 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--~~--------~~~~~~~g~~v~l~C~-----~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~ 160 (323)
.+.+..+.......+.+ .+ ....+..|+.+.|.|. +.+.+ .+.+.|++++..+... ..+
T Consensus 99 ~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p---~~~v~W~k~g~~~~~~---~~~ 172 (339)
T 3o4o_C 99 TTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT---DVKIQWYKDSLLLDKD---NEK 172 (339)
T ss_dssp CEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSS---CCCBCCEESSCBCCTT---CSS
T ss_pred EEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCC---CceEEEecCCeeCCCC---Cce
Confidence 99987665443333333 11 1235778999999999 67766 6899999999888651 234
Q ss_pred EE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEe-----cceee-eeceeEEeeCCeEEEEEEE-
Q psy15235 161 LT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIM-----KPTAK-LVETLTVIEGEKLRLECLV- 229 (323)
Q Consensus 161 ~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~-----~p~~~-~~~~~~~~~g~~~~l~C~~- 229 (323)
+. .....|.|.++..+|+|.|+|.+ .|..+... ....+.|.|.. +|.+. .+....+.+|+.+.|.|.+
T Consensus 173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~ 251 (339)
T 3o4o_C 173 FLSVRGTTHLLVHDVALEDAGYYRCVL-TFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVF 251 (339)
T ss_dssp EEECTTSSEEEESSCCGGGCEEEEEEE-ECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEE
T ss_pred eEEcCCcceEEEcccCHhhCeEEEEEE-EECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEE
Confidence 44 33458999999999999999999 67643322 34456666653 34444 3334567889999999999
Q ss_pred --ecCC-CCcEEEEECCeeeeccC--------CeeeeecCCCC-CCcceeEEEeecCcCCC-eEEEEEEeecccCCCCCc
Q psy15235 230 --VGSP-PPTVEWRIGNDTYFRSQ--------GRIKLSEHPEK-GTANSVLQIDEATMADR-GNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 230 --~g~p-~~~~~W~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~~~~~~ 296 (323)
.|+| .+.+.|++++..+.... .++... ..+ ....+.|.|.+++.+|. |.|+|.|.|..|. .
T Consensus 252 ~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~----~ 325 (339)
T 3o4o_C 252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS--ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF----Q 325 (339)
T ss_dssp ESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECC--CSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEE----E
T ss_pred CCCCCCCCceEEEEECCeecccccccccceecceEEec--ccCceEEEEEEEEEEechhhcCccEEEEEEeccCc----e
Confidence 8998 78999999987754221 111111 111 01123899999999997 9999999999976 5
Q ss_pred eeEEEEEE
Q psy15235 297 EAFVYVRV 304 (323)
Q Consensus 297 ~~~~~l~v 304 (323)
...+.+.+
T Consensus 326 ~~~~~~~~ 333 (339)
T 3o4o_C 326 TLRTTVKE 333 (339)
T ss_dssp CCBCCCCC
T ss_pred EEEEEhhH
Confidence 55554443
No 43
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.97 E-value=1.3e-28 Score=199.07 Aligned_cols=231 Identities=15% Similarity=0.174 Sum_probs=162.8
Q ss_pred ceEEecCCcEEEEEEec---cCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe---ecccCc--ceEEEeec
Q psy15235 30 DTEIMEGAPINISCILT---IFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH---EAILES--GYVQSSLF 99 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~---~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~G--~Y~C~~~~ 99 (323)
+..+.+|++++|.|.+. |.+ .++|+++|..+... .......+.+... ...|+| .|+|.+.+
T Consensus 12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~---------~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n 82 (265)
T 2oz4_A 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT---------VTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL 82 (265)
T ss_dssp CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE---------EEECSSEEEEEEEEEECGGGCEEEEEEEEEEE
T ss_pred CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce---------EeeCCCeEEEEeecccccccCCcceEEEEEec
Confidence 34789999999999954 334 99999999877652 1122333333333 446666 59999998
Q ss_pred cCCccceeeeeee--CC------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEe
Q psy15235 100 IPRMNAITGNYDI--EP------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171 (323)
Q Consensus 100 ~~~~~~~~~~~~~--~~------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 171 (323)
..+.......+.+ .+ ....+.+|+.++|.|.+. + .+.+.| +|..+.. . .....|.|.
T Consensus 83 ~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p---~~~i~W--~g~~~~~----~----~~~~~l~i~ 147 (265)
T 2oz4_A 83 GNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--P---RAKVTL--NGVPAQP----L----GPRAQLLLK 147 (265)
T ss_dssp TTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--T---TSEEEE--SSCSSSC----C----SSEECCEEE
T ss_pred CCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--C---CCEEEE--CCEEccC----C----CCcEEEEEc
Confidence 7665433333333 11 122366799999999998 4 689999 7777643 1 234568888
Q ss_pred eeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEecceeee---eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIMKPTAKL---VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~p~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
.+..+|+|.|+|.+..+..+.. .....+.|.|..+|.+.. +....+.+|+.+.|.|.+.|+|.|.+.|++++..+.
T Consensus 148 ~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~ 227 (265)
T 2oz4_A 148 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227 (265)
T ss_dssp CCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC
T ss_pred cccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC
Confidence 8999999999999932331221 123667788888876652 335678999999999999999999999999987322
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
. ...+ ..++.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus 228 ~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~ 264 (265)
T 2oz4_A 228 P----------------IGES--VTVTRDLEGTYLCRARSTQGE----VTREVTVNVLS 264 (265)
T ss_dssp C----------------TTSC--EECCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred C----------------CCcE--EEeehhhCeEEEEEEECCCCc----EEEEEEEEEec
Confidence 1 1122 247889999999999999966 78888888864
No 44
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.97 E-value=1.1e-28 Score=229.83 Aligned_cols=247 Identities=20% Similarity=0.288 Sum_probs=186.3
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM 103 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~ 103 (323)
+....+.+|++++|.|.+ .|.+.++|+++|..+... .. .|.|.++ .|+|.|+|.+.+..+.
T Consensus 350 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------------~~--~L~i~~v~~~d~G~Y~C~a~n~~g~ 414 (816)
T 3dmk_A 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------ES--VLRIESVKKEDKGMYQCFVRNDRES 414 (816)
T ss_dssp SSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------------SS--EEEESSCCGGGCEEEEEEEECSSCE
T ss_pred CCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------------CC--EEEEcCCCHHHCEEEEEEEECCCCc
Confidence 345678899999999994 567899999999877553 22 3555554 4599999999987665
Q ss_pred cceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---------e
Q psy15235 104 NAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---------Q 163 (323)
Q Consensus 104 ~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---------~ 163 (323)
......+.+ .+....+.+|+.+.|.|.+.+.| .+.+.|+++|..+.. ..++. .
T Consensus 415 ~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~v~W~~~g~~l~~----~~~~~~~~~~~~~~~ 487 (816)
T 3dmk_A 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNP---TPEISWELDGKKIAN----NDRYQVGQYVTVNGD 487 (816)
T ss_dssp EEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSS---CCEEEEEETTEECCS----CTTEEEEEEECTTSC
T ss_pred EEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCC---CCEEEEEECCEECCC----CCCcccccEEecCCC
Confidence 432222221 22334467899999999999988 789999999998866 33332 1
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECC
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 243 (323)
....|.|.++..+|+|.|+|.+ .|.. +.......|.|..+|.+.......+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus 488 ~~~~L~i~~v~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~ 564 (816)
T 3dmk_A 488 VVSYLNITSVHANDGGLYKCIA-KSKV--GVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564 (816)
T ss_dssp EEEEEEESSCCTTTCEEEEEEE-EETT--EEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETT
T ss_pred cEEEEEEeeccccCCEEEEEEE-EECC--CeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECC
Confidence 2346999999999999999999 6763 335667788888888777666778889999999999999998899999999
Q ss_pred eeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
..+... .+.... ...+|.|.++. .+|+|.|+|.|.|..|. .....+.|.|...|..
T Consensus 565 ~~l~~~-~~~~~~-------~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~---~~~~~~~v~v~~~p~~ 621 (816)
T 3dmk_A 565 RALPIN-RKQKVF-------PNGTLIIENVERNSDQATYTCVAKNQEGY---SARGSLEVQVMVLPRI 621 (816)
T ss_dssp EESCCS-TTEEEC-------TTSEEEESSCCHHHHCEEEEEEEEESSSC---EEEEEEEEEEECCCCC
T ss_pred eEcccC-CceEEe-------cCCeEEEEecCccccCEEEEEEEEECCCc---eeeeeEEEEEecCCcc
Confidence 887543 333333 35689999998 68999999999999864 2455667777665544
No 45
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.97 E-value=2.6e-29 Score=214.04 Aligned_cols=259 Identities=17% Similarity=0.275 Sum_probs=176.0
Q ss_pred EeeceEE---ecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec-ccCcceEEEeecc
Q psy15235 27 YFGDTEI---MEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA-ILESGYVQSSLFI 100 (323)
Q Consensus 27 ~~~~~~v---~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~G~Y~C~~~~~ 100 (323)
.|.+..+ .+|+.++|.|.+ .|.+.+.|+|+|..+.... ... + ....+.+.+..... .|+|.|+|.+.+.
T Consensus 10 ~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~-~~~--~--~~~~~~L~i~~~~~~~D~G~Y~C~a~n~ 84 (382)
T 1cs6_A 10 QPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP-DSR--Y--RLVAGDLVISNPVKAKDAGSYQCVATNA 84 (382)
T ss_dssp CCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCST-TSS--E--EEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred CCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCC-Ccc--E--EeeCCeEEEecccccccCEEEEEEEEcC
Confidence 3444554 689999999994 4678999999998876531 111 1 12244444433332 5699999999986
Q ss_pred CCcc-----ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-E-eceeEE
Q psy15235 101 PRMN-----AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-T-QSKDSI 168 (323)
Q Consensus 101 ~~~~-----~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~-~~~~~l 168 (323)
.+.. .+.+.... .+....+.+|+.++|.|.+....| .+.+.|++++..+... .+.+. . .....|
T Consensus 85 ~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p--~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L 160 (382)
T 1cs6_A 85 RGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP--ALSYRWLLNEFPNFIP--ADGRRFVSQTTGNL 160 (382)
T ss_dssp TEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEES--CCEEEEEESSTTCBCC--CCSSEEECTTTCCE
T ss_pred CcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCC--CcEEEEEECCCccccc--cCceEEEecCceEE
Confidence 5532 11111111 233455788999999998654333 6799999998765321 12222 2 345689
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCCCCC---ceeeeeEEE------ecceee--eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTNTTP---LAQADFDVI------MKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTV 237 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~---~~~~~l~v~------~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~ 237 (323)
.|.+++.+|+|.|+|.+ .+..+.... .....+.+. .+|.+. .+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 161 ~i~~~~~~d~G~Y~C~~-~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i 239 (382)
T 1cs6_A 161 YIAKTEASDLGNYSCFA-TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239 (382)
T ss_dssp EESSCCGGGCEEEEEEE-EEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEE
T ss_pred EEEeeCcccCeeEEEEE-EEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEE
Confidence 99999999999999999 555321111 222334432 244443 244667889999999999999999999
Q ss_pred EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.|++++..+.. ... .....|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 240 ~W~~~~~~~~~---~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~ 297 (382)
T 1cs6_A 240 KWRKLDGSQTS---KWL--------SSEPLLHIQNVDFEDEGTYECEAENIKGR----DTYQGRIIIHAQPDW 297 (382)
T ss_dssp EEEECCSCCSC---CCS--------BSSSEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred EEEECCccccc---EEe--------cCCcEEEEccCChhhCEEEEEEEEcCCCe----EEEEEEEEEecCCCc
Confidence 99998876532 111 13678999999999999999999999966 677788888776654
No 46
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.96 E-value=4.4e-29 Score=213.03 Aligned_cols=263 Identities=15% Similarity=0.210 Sum_probs=175.0
Q ss_pred ceEEecCCcEEEEEEe--ccCceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc------CcceEEEeecc
Q psy15235 30 DTEIMEGAPINISCIL--TIFEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL------ESGYVQSSLFI 100 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~------~G~Y~C~~~~~ 100 (323)
.+.+.+|+.++|.|.+ .|.+.++|++ +|..+.... .... ...++.+.|......| +|.|+|.+.+.
T Consensus 13 ~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~--~~~~---~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~ 87 (388)
T 2v5m_A 13 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP--GLRQ---ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ 87 (388)
T ss_dssp EEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT--TTBE---ECSTTEEEECCCCGGGCCHHHHEEEEEEEEEET
T ss_pred eEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCC--CceE---EcCCceEEecccChhhccccccCceEEEEEEcc
Confidence 3568899999999994 5678999999 777765431 1111 1234444433333344 89999999987
Q ss_pred CCcc---ceeeeee------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-cccccCcEE-eceeEEE
Q psy15235 101 PRMN---AITGNYD------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-ATELSGRLT-QSKDSIT 169 (323)
Q Consensus 101 ~~~~---~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~ 169 (323)
.+.. .+..... ..+....+.+|+.++|.|.+.+.++...+.+.|++++..+.. ......++. .....|.
T Consensus 88 ~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~ 167 (388)
T 2v5m_A 88 FGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167 (388)
T ss_dssp TEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEE
T ss_pred CCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEE
Confidence 6542 1111111 133445578899999999998865311379999999876533 112233443 4456899
Q ss_pred EeeeecCCC-eeEEEEEEcCCCCCCC--CceeeeeEEEec-----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235 170 IRKTTVDDA-GQYSCRLIDPKSTNTT--PLAQADFDVIMK-----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEW 239 (323)
Q Consensus 170 i~~~~~~d~-G~y~C~~~~~~~~~~~--~~~~~~l~v~~~-----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W 239 (323)
|.+++.+|+ |.|+|.+ .+..+... ......+.|..+ |... ......+.+|+.+.|.|.+.|+|.+.+.|
T Consensus 168 i~~v~~~d~~G~Y~C~~-~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W 246 (388)
T 2v5m_A 168 IREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRW 246 (388)
T ss_dssp ESSCCGGGGGCCEEEEE-EETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEE
T ss_pred EecCCccccCeeEEEEe-ccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEE
Confidence 999999999 9999999 55422211 111234555543 2111 12235578899999999999999999999
Q ss_pred EECCeeee-----ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 240 RIGNDTYF-----RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 240 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
++++.... ....++.. ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~ 310 (388)
T 2v5m_A 247 YKFIEGTTRKQAVVLNDRVKQ--------VSGTLIIKDAVVEDSGKYLCVVNNSVGG----ESVETVLTVTAPLSA 310 (388)
T ss_dssp EEECTTSSCEEECCCSSSEEE--------ETTEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEEEEEE
T ss_pred EecCCCCcccccccccCceec--------ccCEEEECcCCHHHCeEEEEEEecCCCc----eeEEEEEEEeCCCcc
Confidence 99754321 11122222 2578999999999999999999999965 677788888776553
No 47
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=213.40 Aligned_cols=272 Identities=17% Similarity=0.179 Sum_probs=172.0
Q ss_pred eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--C
Q psy15235 24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--E 90 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~ 90 (323)
.+..+..+.+.+|++++|.|.+. +.+.+.|+|++ ..+..... .....+..........|.|.+++. +
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 34556778899999999999954 56899999964 22221100 001112233345566788887765 9
Q ss_pred cceEEEeeccCCcc-------cee--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc
Q psy15235 91 SGYVQSSLFIPRMN-------AIT--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT 155 (323)
Q Consensus 91 G~Y~C~~~~~~~~~-------~~~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~ 155 (323)
|.|+|.+.+..+.. .+. |.+.+.+....+.+|+.++|.|.+.+.+|. .+.|+|+++|..+....
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~ 161 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPG-AVTVAWKADGSPVKAGV 161 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCC-ceEEEEecCCCCCCCce
Confidence 99999998864321 111 112222222234568999999999988742 24999999998876411
Q ss_pred cccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE----EEecceee-eeceeEEeeCCeEE
Q psy15235 156 ELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAK-LVETLTVIEGEKLR 224 (323)
Q Consensus 156 ~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~----v~~~p~~~-~~~~~~~~~g~~~~ 224 (323)
....... .....|.|.++..+|+|.|+|.+ .|..+.. ...+.+. +..+|.+. ..+...+.+|+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a-~n~~~~~--~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~ 238 (523)
T 2rcj_C 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV-THEGSTV--EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAA 238 (523)
T ss_pred EeccccccCCCCEEEEEEEEEechhcCCCceEEEEE-EecCccc--ccceeeeecCCCCcCCEEEecCCCcccccCCceE
Confidence 1100000 12346999999999999999999 6764332 2222221 12345444 33344567899999
Q ss_pred EEEEEecC-CCC-cEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 225 LECLVVGS-PPP-TVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 225 l~C~~~g~-p~~-~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
|.|.+.|. |.| .+.|++++..+.... .+.... .......+.|.|.++..+| |.|+|.|.|..|. ....+.
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~----~~~~~~ 311 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQS--SGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKR 311 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEecC--CCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC----cceEEe
Confidence 99999886 877 899999997653211 111100 0011134689999999999 9999999999966 444555
Q ss_pred EEEcc
Q psy15235 302 VRVKG 306 (323)
Q Consensus 302 l~v~~ 306 (323)
|.|..
T Consensus 312 l~v~~ 316 (523)
T 2rcj_C 312 VEPLS 316 (523)
T ss_pred cCCCc
Confidence 54443
No 48
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=213.18 Aligned_cols=258 Identities=13% Similarity=0.101 Sum_probs=163.3
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM 103 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~ 103 (323)
+.++.|.+|++++|.|.+ .+...+.|++++..+..... +. ....+...|.|.+++. +|.|+|.+.+..+.
T Consensus 55 ~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~-----~~-~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~ 128 (527)
T 3qs9_E 55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-----FD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATN 128 (527)
T ss_dssp -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-----C------CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred eeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccc-----cC-CCcceEEEEEECcCChhhCeeEEEEEEecccc
Confidence 346889999999999995 34568999999876544210 00 1113445677877665 99999999987766
Q ss_pred cceeeeeeeCC-------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC
Q psy15235 104 NAITGNYDIEP-------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD 176 (323)
Q Consensus 104 ~~~~~~~~~~~-------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 176 (323)
......+.+.+ .......++.+.|.|.+.|.| .+.|.|++++..+.. ...............+..+
T Consensus 129 ~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P---~P~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 201 (527)
T 3qs9_E 129 YTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP---EPIVEWVLCDSQGES----CKEESPAVVKKEEKVLHEL 201 (527)
T ss_dssp EEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESS---CCEEEEEEC-----------------CEEECCSEECCC
T ss_pred EEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceec---CCeEEEEECCCCCcc----ccccCCcEEEEeeeecccc
Confidence 54433333321 122345578889999999998 799999998876532 1111111112223334578
Q ss_pred CCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeee
Q psy15235 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
|+|.|+|.| .|..+... ...+.|.|..+|.. .+....+.+|+.+.|.|.+. |.|.+.+.|++++..+.... .+..
T Consensus 202 d~G~Y~C~A-~N~~G~~~-~~~~~l~V~~~p~~-~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~-~~~~ 277 (527)
T 3qs9_E 202 FGTDIRCCA-RNELGREC-TRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN-YFEM 277 (527)
T ss_dssp CSSCEEEEE-ECSSCEEE-EECEEEESSSCCCC-SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG-EEEE
T ss_pred CCEEEEEEE-EeCCCccc-ceEEEEEEeccCcc-CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc-eeee
Confidence 999999999 77643322 23356666666655 34467788999999999996 89999999999998765331 1111
Q ss_pred ecCCCC--CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 256 SEHPEK--GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 256 ~~~~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
...... .....+|.|.+++.+|+|.|+|.|.|. ....+.|.|..+|.
T Consensus 278 ~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-------~~~~~~L~V~~~p~ 326 (527)
T 3qs9_E 278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-------PSQSALVTIVEKGF 326 (527)
T ss_dssp EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-------EEEEEEEEEC--CE
T ss_pred eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-------CCceEEEEEEccCc
Confidence 100000 113467999999999999999999987 23566677766543
No 49
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.96 E-value=3.4e-28 Score=205.70 Aligned_cols=224 Identities=11% Similarity=0.067 Sum_probs=157.5
Q ss_pred eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccce
Q psy15235 29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~ 106 (323)
....+.+|++++|.|.+ .|.+.++|+++|..+... ...+.|......|+|.|+|.+.+..+....
T Consensus 104 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~ 170 (363)
T 1wio_A 104 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEF 170 (363)
T ss_dssp SCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEE-------------SSEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred CceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccccc-------------ceEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence 33468899999999994 466899999988655322 333444444445699999999876554433
Q ss_pred eeeeee-----CCceeEEecCCcEEEEEEeec-----CCCCCCceEEEEECCeeccccc----cccCcEE----------
Q psy15235 107 TGNYDI-----EPKYKVFEYRVPFTLKCNVTS-----PPPGDDYQIVWYKGNKSITEAT----ELSGRLT---------- 162 (323)
Q Consensus 107 ~~~~~~-----~~~~~~~~~g~~v~l~C~~~~-----~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~---------- 162 (323)
...+.+ .+....+.+|+.+.|.|.+.+ .| .+.+.|+++|..+.... ....++.
T Consensus 171 ~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P---~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (363)
T 1wio_A 171 KIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG---SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247 (363)
T ss_dssp CCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCE---EEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCC
T ss_pred EEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCC---ceeEEEecCCCCccceEEEEEecCCeeeccccccchhh
Confidence 333332 223345778999999998877 55 68999999998765310 0012221
Q ss_pred ----eceeEEEEeeeecCCCeeEEEEEEcCC--CCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCc
Q psy15235 163 ----QSKDSITIRKTTVDDAGQYSCRLIDPK--STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236 (323)
Q Consensus 163 ----~~~~~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 236 (323)
.....|.|.++..+|+|.|+|.| .|. .+ .....+.|.|.. ..|+.+.|.|.+.|.|+|.
T Consensus 248 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~~~g--~~~~~~~l~V~~------------v~g~~~~l~C~~~g~p~p~ 312 (363)
T 1wio_A 248 QMGKKLPLHLTLPQALPQYAGSGNLTL-ALEAKTG--KLHQEVNLVVMR------------ATQLQKNLTCEVWGPTSPK 312 (363)
T ss_dssp BCCSSSSCEEEESSBCGGGCEEEEEEE-CBTTTTC--CEEEEEEEEEEE------------ECCCSSSEEEEEESSCCTT
T ss_pred hcccCCceEEEEccCCcCcCcEEEEEE-EEhhhcC--eEEEEEeEEEEE------------ecCCCeeEEEEEccccCCC
Confidence 11448999999999999999999 676 43 344455555541 1289999999999998887
Q ss_pred --EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 237 --VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 237 --~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
+.|++++..+.. ...|.|.++..+|+|.|+|.|.|.. . ......|.|
T Consensus 313 ~~i~W~~~~~~~~~----------------~~~l~i~~v~~~d~G~Y~C~a~~~~-~----~~~~~~~~V 361 (363)
T 1wio_A 313 LMLSLKLENKEAKV----------------SKREKAVWVLNPEAGMWQCLLSDSG-Q----VLLESNIKV 361 (363)
T ss_dssp CCEEEECSSSSCSE----------------EESSSEEEESSCCSEEEEEEECSSS-S----CCEEEEEEE
T ss_pred ccEEEEeCCCceee----------------eeeeeeeeeccccceeEEEEEecCC-e----EEEecceEe
Confidence 999999976642 3557789999999999999999644 2 445555544
No 50
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.96 E-value=1.1e-26 Score=208.74 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=177.5
Q ss_pred eceEEecCCcEEEEEEe-ccC---ceEEEE-EcCccce---eec------cCcceEEEeeeeCCeEEEEEeeccc--Ccc
Q psy15235 29 GDTEIMEGAPINISCIL-TIF---EQVKWQ-LNGRNIN---QSS------VDSGFAATANLTEDNFKYSIHEAIL--ESG 92 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~-~~~---~~v~W~-~~g~~~~---~~~------~~~~~~~~~~~~~~~~~l~i~~~~~--~G~ 92 (323)
..+.+.+|+.+.|.|.+ .+. +.+.|+ ++|.... ... ...+..+......+.+.|.|.+++. +|.
T Consensus 225 ~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~ 304 (585)
T 2ocw_A 225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR 304 (585)
T ss_pred ceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEE
Confidence 34567899999999994 333 678897 7774322 110 0111111111225555677777654 999
Q ss_pred eEEEeeccCCccc----eeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceE----EEEE--CCe--ecc
Q psy15235 93 YVQSSLFIPRMNA----ITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQI----VWYK--GNK--SIT 152 (323)
Q Consensus 93 Y~C~~~~~~~~~~----~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i----~W~~--~~~--~~~ 152 (323)
|+|.+.+...... ....+.+ .+....+.+|+.+.|.|.+.+.+ .+.+ +|++ +|. .+.
T Consensus 305 Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p---~p~i~~w~~W~~~~~g~~~~l~ 381 (585)
T 2ocw_A 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE---SKSIKYWCLWEGAQNGRCPLLV 381 (585)
T ss_pred EEEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCC---CccEEEEEEEEccCCCCCceee
Confidence 9999998533221 2222222 33444577899999999999887 5655 8999 876 443
Q ss_pred cc-----ccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe-cceeeeeceeEEeeC
Q psy15235 153 EA-----TELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEG 220 (323)
Q Consensus 153 ~~-----~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~g 220 (323)
.. .....++. .....|.|.+++.+|+|.|+|.+ +.. ......+.|.|.. +|.+..+....+.+|
T Consensus 382 ~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~---g~~~~~~~l~V~~~~p~~~~~~~~~v~~G 457 (585)
T 2ocw_A 382 DSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGD---TLWRTTVEIKIIEGEPNLKVPGNVTAVLG 457 (585)
T ss_pred eecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCC---CccceeEEEEEecCccccccCCceeEecC
Confidence 21 11123332 12245999999999999999988 433 3346677777766 455556667789999
Q ss_pred CeEEEEEEEe----cCCCCcEEEEECCeeeeccCCe-----eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 221 EKLRLECLVV----GSPPPTVEWRIGNDTYFRSQGR-----IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 221 ~~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.+.|.|.+. +.|.+.+.|+++|..+...... +... ........|+|.++..+|+|.|+|.|.|..|.
T Consensus 458 ~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 534 (585)
T 2ocw_A 458 ETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC---DENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534 (585)
T ss_pred CcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEe---cCcccEEEEEECCCCcccCeEEEEEeEeCCCc
Confidence 9999999996 6677899999999876533211 1111 01113479999999999999999999999965
Q ss_pred CCCCceeEEEEEEccee
Q psy15235 292 NSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 292 ~~~~~~~~~~l~v~~~~ 308 (323)
.....+.|.|.++|
T Consensus 535 ---~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 535 ---GETAAVYVAVEERK 548 (585)
T ss_pred ---cEEEEEEEEEEeee
Confidence 13355889998887
No 51
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.96 E-value=1.1e-26 Score=201.27 Aligned_cols=252 Identities=14% Similarity=0.185 Sum_probs=163.5
Q ss_pred EeeceEEecCCcEEEEEEeccC------ceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc
Q psy15235 27 YFGDTEIMEGAPINISCILTIF------EQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~~------~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~ 89 (323)
.+..+.+.+|++++|.|.+.+. +.+.|+|++ ..+... ....+ +......+...|.|.+++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~ 84 (438)
T 1qgc_4 7 SPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDR--FSGSGSRTDFTLTIDPVEA 84 (438)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTT--EEEEEETTEEEEEESSCCG
T ss_pred cCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCc--EEEEccCCcEEEEeCCCcC
Confidence 3677889999999999995533 379999963 332210 01111 2223345667788887754
Q ss_pred --CcceEEEeeccCCcc---ceeeeeee---CCceeEE------ecCCcEEEEEEeecCCCCCCc-eEEEEECCeecccc
Q psy15235 90 --ESGYVQSSLFIPRMN---AITGNYDI---EPKYKVF------EYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEA 154 (323)
Q Consensus 90 --~G~Y~C~~~~~~~~~---~~~~~~~~---~~~~~~~------~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~ 154 (323)
+|.|+|.+.+..+.. .....+.. .|.+... .+|+.++|.|.+.+.+| .+ .|.|+++|..+...
T Consensus 85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p--~~~~v~W~k~g~~~~~~ 162 (438)
T 1qgc_4 85 DDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP--KDINVKWKIDGSERQNG 162 (438)
T ss_dssp GGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS--SCEEEEEEETTEEECTT
T ss_pred cCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccC--CCcEEEEEECCEEcCCC
Confidence 999999998865421 11111111 2332221 24789999999988443 45 99999999887652
Q ss_pred cc--------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeE
Q psy15235 155 TE--------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKL 223 (323)
Q Consensus 155 ~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~ 223 (323)
.. .+..+ .....|.|.++..+|+|.|+|.+ .|..+.. .+.+.+.. .+.+..+....+.+|+.+
T Consensus 163 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~G~~v 236 (438)
T 1qgc_4 163 VLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKTSTS----PIVKSFNRNECEVMLVESGGGLVKPGGSL 236 (438)
T ss_dssp EEEEEECCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-EETTCSS----CEEEEEETTC-CCEEEEECCEEECTTCCE
T ss_pred ceeccccccCCCCcE-EEEEEEEEeCcccCCCCeEEEEE-EecccCC----ceecccccccceeEEecCCceEEecCCcE
Confidence 00 01111 22457999999999999999999 6663321 23333332 233444556778899999
Q ss_pred EEEEEEecCC--CCcEEEEEC--Ceeeec----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 224 RLECLVVGSP--PPTVEWRIG--NDTYFR----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 224 ~l~C~~~g~p--~~~~~W~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
.|.|.+.|.| .+.+.|+++ +..+.. ...++.+.. ........|.|.+++.+|+|.|+|
T Consensus 237 ~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C 314 (438)
T 1qgc_4 237 KLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISR--DNAKNTLYLQMSSLRSADTAMYYC 314 (438)
T ss_dssp EEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCCEEEE
T ss_pred EEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEe--ecCCCeEEEEECCCChhhCEEEEE
Confidence 9999999988 678999996 443320 123444431 111135689999999999999999
Q ss_pred EEeeccc
Q psy15235 284 HGNNVAT 290 (323)
Q Consensus 284 ~a~n~~g 290 (323)
.|.|..|
T Consensus 315 ~a~n~~~ 321 (438)
T 1qgc_4 315 VRREDGG 321 (438)
T ss_dssp EECCSSS
T ss_pred EEEccCC
Confidence 9999554
No 52
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.96 E-value=1.5e-26 Score=207.78 Aligned_cols=275 Identities=15% Similarity=0.202 Sum_probs=182.4
Q ss_pred eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec----------cCcceEEEe-eeeCCeEEEEEeeccc--Cc
Q psy15235 28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS----------VDSGFAATA-NLTEDNFKYSIHEAIL--ES 91 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~----------~~~~~~~~~-~~~~~~~~l~i~~~~~--~G 91 (323)
+....+.+|+.++|.|.+. +.+.+.|+|++....... ...+..+.. ....+.+.|.|.+++. +|
T Consensus 119 ~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G 198 (585)
T 2ocw_A 119 TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG 198 (585)
T ss_pred CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCe
Confidence 4567789999999999954 346799999876532210 011111111 1123445677777654 99
Q ss_pred ceEEEeeccCCccceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEE-ECCee---cccc-----ccccC
Q psy15235 92 GYVQSSLFIPRMNAITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWY-KGNKS---ITEA-----TELSG 159 (323)
Q Consensus 92 ~Y~C~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~-~~~~~---~~~~-----~~~~~ 159 (323)
.|+|.+.+..+.......+.+ .|....+.+|+.++|.|.+.+.+|. .+.+.|+ ++|.. +... .....
T Consensus 199 ~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~~~~~-~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~ 277 (585)
T 2ocw_A 199 QYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVAN-VAKFLCRQSSGENCDVVVNTLGKRAPAFEG 277 (585)
T ss_pred EEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCCCCCC-ceEEEEEeCCCCCcceEEeCCCcCCcccCC
Confidence 999999987766544444444 4555567889999999997443321 2789997 77732 1110 01133
Q ss_pred cEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEe
Q psy15235 160 RLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVV 230 (323)
Q Consensus 160 ~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~ 230 (323)
++. .....|.|.+++.+|+|.|+|.+ .|...... ....+.|.|..+|.+. .+....+.+|+.+.|.|.+.
T Consensus 278 ~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a-~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~ 356 (585)
T 2ocw_A 278 RILLNPQDKDGSFSVVITGLRKEDAGRYLCGA-HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYN 356 (585)
T ss_pred ceEeeccCCCcEEEEEEccCChhhCEEEEEEE-EcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecC
Confidence 332 12237999999999999999999 66522211 1267778888877665 44466788999999999999
Q ss_pred cCCCCcE----EEEE--CCe--eeecc--------CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235 231 GSPPPTV----EWRI--GND--TYFRS--------QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294 (323)
Q Consensus 231 g~p~~~~----~W~~--~~~--~~~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~ 294 (323)
+.|.+.+ .|++ ++. .+... ..++.+.....+ ...+|+|.+++.+|+|.|+|.| |..|.
T Consensus 357 ~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~--g~~~L~I~~v~~~D~G~Y~C~a-n~~g~--- 430 (585)
T 2ocw_A 357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN--GTFTVILNQLTSRDAGFYWCLT-NGDTL--- 430 (585)
T ss_pred CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCC--cEEEEEECCCChhhCEEEEEcc-cCCCc---
Confidence 9998876 7999 886 44322 233433311111 2346999999999999999999 87755
Q ss_pred CceeEEEEEEcceecCc
Q psy15235 295 PNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 295 ~~~~~~~l~v~~~~~~~ 311 (323)
....+.|.|...++.+
T Consensus 431 -~~~~~~l~V~~~~p~~ 446 (585)
T 2ocw_A 431 -WRTTVEIKIIEGEPNL 446 (585)
T ss_pred -cceeEEEEEecCcccc
Confidence 6777888887654443
No 53
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.96 E-value=4.6e-27 Score=208.29 Aligned_cols=252 Identities=14% Similarity=0.195 Sum_probs=161.4
Q ss_pred eceEEecCCcEEEEEEecc--C--ceEEEEEcCccceeeccCcceEEEeeeeCCe----EEEEEeecc--cCcceEEEee
Q psy15235 29 GDTEIMEGAPINISCILTI--F--EQVKWQLNGRNINQSSVDSGFAATANLTEDN----FKYSIHEAI--LESGYVQSSL 98 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~--~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~--~~G~Y~C~~~ 98 (323)
....+.+|+.++|.|.+.+ . +.++|+|+|..+....... ......++. ..|.|.++. |+|.|+|.+.
T Consensus 122 ~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~ 198 (523)
T 2rcj_C 122 PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT---KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT 198 (523)
T ss_pred CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec---cccccCCCCEEEEEEEEEechhcCCCceEEEEEE
Confidence 3345678999999999543 2 3899999998876531100 000011221 246666654 5999999999
Q ss_pred ccCCccceeee------------eeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeecccccc-----ccCc
Q psy15235 99 FIPRMNAITGN------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATE-----LSGR 160 (323)
Q Consensus 99 ~~~~~~~~~~~------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~-----~~~~ 160 (323)
+..+....... +...+....+.+|+.+.|.|.+.+..| .+ .|.|++++..+..... .++.
T Consensus 199 n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P--~p~~v~W~k~g~~~~~~~~~~~~~~~g~ 276 (523)
T 2rcj_C 199 HEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP--QPVTVSWNSGALTSGVHTFPAVLQSSGL 276 (523)
T ss_pred ecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeC--CCeEEEEecCCcccceEeCCcEecCCCc
Confidence 87655322211 111111122467999999999988733 45 8999999977542100 0111
Q ss_pred EEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eec-ee-EEeeCCeEEEEEEEecCCC---
Q psy15235 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVE-TL-TVIEGEKLRLECLVVGSPP--- 234 (323)
Q Consensus 161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~-~~-~~~~g~~~~l~C~~~g~p~--- 234 (323)
+ .....|.|.++..+| |.|+|.| .|..+. ......+.+...|.+. .++ .. .+.+|+.+.|.|.+.|.|+
T Consensus 277 ~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~g~--~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~ 351 (523)
T 2rcj_C 277 Y-SLSSVVTVPSSSLGT-QTYICNV-NHKPSN--TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP 351 (523)
T ss_pred E-EEEEEEEechhhcCC-ceEEEEE-EeCCCC--cceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCC
Confidence 1 224589999999999 9999999 777443 3344455554455443 222 22 2678999999999998753
Q ss_pred -CcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 235 -PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 235 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.+.|+++|..+........... ..+. ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 352 ~~~v~W~k~g~~l~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 409 (523)
T 2rcj_C 352 QVKFNWYVDGVQVHNAKTKPREQQ-YNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALP 409 (523)
T ss_pred ceEEEEEECCeEccCCccCCceec-CCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCC
Confidence 48999999998764432111110 1111 13467999999999999999999998765
No 54
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.95 E-value=3.9e-26 Score=198.60 Aligned_cols=254 Identities=12% Similarity=0.116 Sum_probs=159.8
Q ss_pred EeeceEEecCCcEEEEEEec--cCc---eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeec
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFE---QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLF 99 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~---~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~ 99 (323)
.+.+..+.+|++++|.|.+. +.+ .++|+|+|..+....... ......|.|..+ .|+|.|+|.+.+
T Consensus 92 ~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~n 163 (450)
T 1z7z_I 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--------EPAEVTTTVLVRRDHHGANFSCRTEL 163 (450)
T ss_dssp CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--------TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred cCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc--------cccceEEEEEeeccccCceEEEEEEc
Confidence 34557789999999999954 445 899999998887642110 122234555544 449999999998
Q ss_pred cCCccc--------eeeeeee------CCce---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 100 IPRMNA--------ITGNYDI------EPKY---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 100 ~~~~~~--------~~~~~~~------~~~~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
..+... ....+.+ .|.. ..+.+|+.++|.|.+.+.+|...+.+.|++++..+.. .....
T Consensus 164 ~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~----~~~~~ 239 (450)
T 1z7z_I 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYG 239 (450)
T ss_dssp ECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC----EEEEE
T ss_pred ccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc----eEEec
Confidence 754321 1111111 2333 5578899999999999984321369999999988764 11111
Q ss_pred eceeEEE-EeeeecCCCe--eEEEEEEcCCCCCCCCceeeeeEEEe--cceeeeeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235 163 QSKDSIT-IRKTTVDDAG--QYSCRLIDPKSTNTTPLAQADFDVIM--KPTAKLVETLTVIEGEKLRLECLVVGSPPPTV 237 (323)
Q Consensus 163 ~~~~~l~-i~~~~~~d~G--~y~C~~~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 237 (323)
.....+. ..++..+|+| .|+|.+ .|.. ........|.|.. +|.+... ...+.+|+.++|.|.+. |.+.+
T Consensus 240 ~~~~~~~~~~~v~~~d~G~~~Y~C~a-~n~~--g~~~~~~~l~V~~~~~p~i~~~-~~~v~~G~~v~l~C~~~--p~p~i 313 (450)
T 1z7z_I 240 NDSFSAKASVSVTAEDEGTQRLTCAV-ILGN--QSQETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAH--PRAKV 313 (450)
T ss_dssp TTEEEEEEEEECCGGGCEEEEEEEEE-EETT--EEEEEEEEEEEECCCCCEEEES-CSEEETTCEEEEEEEC--------
T ss_pred CCceeEEEEEEeEhhhCCcEEEEEEE-ccCC--ccEEEEEEEEEecCCCCeEecC-CeeEeCCCcEEEEEecC--CCCEe
Confidence 1111111 2267899999 999999 6663 3344566677766 5555533 45788999999999997 88899
Q ss_pred EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
.| +|..+...+ ....|.|.++..+|+|.|+|.|.|..|.........+.|.|..+|.....
T Consensus 314 ~W--~g~~~~~~~-------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~ 374 (450)
T 1z7z_I 314 TL--NGVPAQPLG-------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER 374 (450)
T ss_dssp ------------C-------------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCST
T ss_pred EE--CCEEcCCCC-------------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeec
Confidence 99 676652111 24579999999999999999999876421112457788888877765543
No 55
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.95 E-value=2.9e-27 Score=196.76 Aligned_cols=244 Identities=14% Similarity=0.220 Sum_probs=149.5
Q ss_pred CcEEEEEEec---c-CceEEEEEcCccceeeccCcceEEEeeeeCCeE----EEEEeecc--cCcceEEEeeccCCccce
Q psy15235 37 APINISCILT---I-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNF----KYSIHEAI--LESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 37 ~~v~L~C~~~---~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~--~~G~Y~C~~~~~~~~~~~ 106 (323)
+++.|.|.+. | .+.|+|+|+|..+...... .... ..++.+ .|.+.... |+|.|+|.+.+..+....
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~--~~~~--~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~ 100 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLST--ASTT--QEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED 100 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEE--EEEE--EETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceec--CCcC--ccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcce
Confidence 6999999953 2 3689999999887643100 0001 112222 34455443 589999999986544322
Q ss_pred e-----------eeeee-CCceeEEecCCcEEEEEEeecCCCCCCc---eEEEEECC-eeccccc-----cccCcEEece
Q psy15235 107 T-----------GNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDY---QIVWYKGN-KSITEAT-----ELSGRLTQSK 165 (323)
Q Consensus 107 ~-----------~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~---~i~W~~~~-~~~~~~~-----~~~~~~~~~~ 165 (323)
. +.+.+ .|....+..|++++|.|.+.+.+| .+ .|.|++++ ..+.... ..+.++ ...
T Consensus 101 ~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P--~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~-~~~ 177 (323)
T 2wqr_A 101 STKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP--SKGTVQLTWSRASGKPVNHSTRKEEKQRNGTL-TVT 177 (323)
T ss_dssp EECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECC--CSSCCEEEEEETTCCCCCCCCCEEEECTTSCE-EEE
T ss_pred eeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCC--CCCceEEEEEECCCcccccccCCCccCCCCCE-EEE
Confidence 1 11111 222223557999999999988654 34 99999975 4332200 111222 234
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE----Eecceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEE
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV----IMKPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVE 238 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v----~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~ 238 (323)
..|.|.++..+|+|.|+|.+ .|.... ......+.+ ..+|.+.+ +.......|+.++|.|.+.|. |++ .+.
T Consensus 178 ~~L~I~~~~~~D~G~Y~C~a-~n~~~~--~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~ 254 (323)
T 2wqr_A 178 STLPVGTRDWIEGETYQCRV-THPHLP--RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQ 254 (323)
T ss_dssp EEEECCHHHHHTTCCEEEEE-ECTTSS--SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEE
T ss_pred EEEEECHHHccCCCCEEEEE-ECCCCC--CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEE
Confidence 57999999999999999999 666321 222223221 24555542 222122239999999999884 544 799
Q ss_pred EEECCeeeeccCCeeee-ecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 239 WRIGNDTYFRSQGRIKL-SEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|+++|..+......... ....++ ....+.|.|..+..+|+|.|+|.|.|..+
T Consensus 255 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 308 (323)
T 2wqr_A 255 WLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA 308 (323)
T ss_dssp EEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTS
T ss_pred EEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCC
Confidence 99999987543111100 000111 12346899999999999999999999884
No 56
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.95 E-value=6.8e-30 Score=236.61 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEecCCcEEEEEEe--ccCce-EEEEEcCccceeec------------------------------cCcceEEEeeeeCC
Q psy15235 32 EIMEGAPINISCIL--TIFEQ-VKWQLNGRNINQSS------------------------------VDSGFAATANLTED 78 (323)
Q Consensus 32 ~v~~G~~v~L~C~~--~~~~~-v~W~~~g~~~~~~~------------------------------~~~~~~~~~~~~~~ 78 (323)
.+.+|+.++|.|.+ .|.+. ++|++++....... ..............
T Consensus 434 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 513 (772)
T 3v2a_R 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceE
Confidence 37899999999994 45565 99999743211000 00000011111123
Q ss_pred eEEEEEeecccCcceEEEeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235 79 NFKYSIHEAILESGYVQSSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150 (323)
Q Consensus 79 ~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~ 150 (323)
...|.+.++.++|.|+|.+.|..+.......+.+ .+. ..+.+|+.+.|.|.+.+.+ .+.+.|++++..
T Consensus 514 ~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p---~~~v~W~k~~~~ 589 (772)
T 3v2a_R 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRST---FENLTWYKLGPQ 589 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCC---CCCcEEEEcCCc
Confidence 3577777787899999999987665432222222 222 2356799999999999887 689999998876
Q ss_pred ccccccccC-----------------cE-E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE--Eecce
Q psy15235 151 ITEATELSG-----------------RL-T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV--IMKPT 208 (323)
Q Consensus 151 ~~~~~~~~~-----------------~~-~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v--~~~p~ 208 (323)
+........ .+ . .....|.|.++..+|+|.|+|.| .|..+.........+.| ..+|.
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~~~s~~~~l~v~~~~~P~ 668 (772)
T 3v2a_R 590 PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA-QDRKTKKRHCVVRQLTVLERVAPT 668 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEE-EeCCCCeEEEEEEeecccccCCCE
Confidence 543100000 00 0 12345999999999999999999 77533333223334444 55676
Q ss_pred ee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 209 AK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 209 ~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
+. .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ++.+.. ..++|+|.++..+|+|.|+|.|.|
T Consensus 669 ~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~-~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N 741 (772)
T 3v2a_R 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKD------GNRNLTIRRVRKEDEGLYTCQACS 741 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCC-CeEEcC------CCcEEEECcCCHHHCEEEEEEEEe
Confidence 65 3445668899999999999999999999999998886443 332221 357899999999999999999999
Q ss_pred cccCCCCCceeEEEEEEcceecCcC
Q psy15235 288 VATRNSQPNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 288 ~~g~~~~~~~~~~~l~v~~~~~~~~ 312 (323)
..|. ....+.|.|.++|...-
T Consensus 742 ~~G~----~~~~~~l~V~~~p~~~~ 762 (772)
T 3v2a_R 742 VLGC----AKVEAFFIIEGAQEKTN 762 (772)
T ss_dssp -------------------------
T ss_pred CCcc----eeEEEEEEEECCCCccc
Confidence 9966 77889999998877653
No 57
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.95 E-value=4.6e-26 Score=198.16 Aligned_cols=246 Identities=12% Similarity=0.131 Sum_probs=165.0
Q ss_pred EeeceEEecCCcEEEEEEec-cCceE-----EEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeec
Q psy15235 27 YFGDTEIMEGAPINISCILT-IFEQV-----KWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLF 99 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~-~~~~v-----~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~ 99 (323)
.|....+.+|++++|.|.+. +.+.+ .|+|++..+... ....|.|.++++ +| |+|.+.+
T Consensus 5 ~P~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~~~~--------------~~~~l~i~~v~~d~g-Y~C~a~~ 69 (450)
T 1z7z_I 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN--------------NRKVYELSNVQEDSQ-PMCYSNC 69 (450)
T ss_dssp ESSEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCSSTT--------------TEEEEEEEEECSCBC-CEEEEEE
T ss_pred CCCceEEecCCcEEEEEEccCCCcccccccceeeecceEecCC--------------CceEEEEEecccCCe-eEEEEeC
Confidence 45678899999999999954 56777 899987644321 112455555544 77 9999975
Q ss_pred cCCccceeeeee---------eCCceeEEecCCcEEEEEEeecCCCCCCc---eEEEEECCeeccccccccCcEE-ecee
Q psy15235 100 IPRMNAITGNYD---------IEPKYKVFEYRVPFTLKCNVTSPPPGDDY---QIVWYKGNKSITEATELSGRLT-QSKD 166 (323)
Q Consensus 100 ~~~~~~~~~~~~---------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~---~i~W~~~~~~~~~~~~~~~~~~-~~~~ 166 (323)
..+.......+. ..+....+.+|+.++|.|.+.+.+ .+ .|.|+|++..+.. ..... ....
T Consensus 70 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~---~~~~~~v~W~k~g~~l~~----~~~~~~~~~~ 142 (450)
T 1z7z_I 70 PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA---PRANLTVVLLRGEKELKR----EPAVGEPAEV 142 (450)
T ss_dssp TTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCB---CGGGEEEEEEETTEEEEE----EECCTTTEEE
T ss_pred CCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCC---CCcCcEEEEeeCCEEeec----ccccccccce
Confidence 443322111111 133334577899999999999987 45 8999999998865 21111 3356
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCC------CceeeeeEEEec----ceeeeeceeEEeeCCeEEEEEEEecC-C--
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTT------PLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGS-P-- 233 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~------~~~~~~l~v~~~----p~~~~~~~~~~~~g~~~~l~C~~~g~-p-- 233 (323)
.|.|.++..+|+|.|+|.+ .|..+... ......+.|... |.+.. ...+.+|+.+.|.|.+.|. |
T Consensus 143 ~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~--~~~v~~G~~v~l~C~~~g~~P~~ 219 (450)
T 1z7z_I 143 TTTVLVRRDHHGANFSCRT-ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--PRVLEVDTQGTVVCSLDGLFPVS 219 (450)
T ss_dssp EEEEECCSSCSSCEEEEEE-EEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC--CSEEETTSEEEEEEEEESCTTGG
T ss_pred EEEEEeeccccCceEEEEE-EcccCCCCceEEeeccCccceeeeccCCCCCEecC--ceeEEeCCcEEEEEEeeCCCCCC
Confidence 8999999999999999999 66533211 113334444432 22222 2568899999999999998 7
Q ss_pred CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe--EEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG--NYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 234 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G--~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
.+.+.|++++..+.. +.... . ......+.+ ++..+|.| .|+|.|.|..|. ....+.|.|...+.
T Consensus 220 ~~~~~W~~~~~~~~~---~~~~~--~--~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~----~~~~~~l~V~~~~~ 285 (450)
T 1z7z_I 220 EAQVHLALGDQRLNP---TVTYG--N--DSFSAKASV-SVTAEDEGTQRLTCAVILGNQS----QETLQTVTIYSFPA 285 (450)
T ss_dssp GCEEEEEETTEECCC---EEEEE--T--TEEEEEEEE-ECCGGGCEEEEEEEEEEETTEE----EEEEEEEEEECCCC
T ss_pred ceEEEEeCCCEeCCc---eEEec--C--CceeEEEEE-EeEhhhCCcEEEEEEEccCCcc----EEEEEEEEEecCCC
Confidence 679999999988753 22222 0 001112222 78999999 999999999865 66677777776443
No 58
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=1.7e-26 Score=200.50 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=161.2
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+. ..+.. . ....+..+..+...+...|.
T Consensus 3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (444)
T 1igt_B 3 KLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ 82 (444)
T ss_dssp EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence 456677889999999999999542 4689999953 32211 0 01122222222234567788
Q ss_pred Eeecc--cCcceEEEeeccCCcc---ceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEE
Q psy15235 84 IHEAI--LESGYVQSSLFIPRMN---AITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWY 145 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~~~~~---~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~ 145 (323)
|.+++ |+|.|+|.+.+..+.. .....+.+ .|.... +.+|+.++|.|.+.+..| .+ .|.|+
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~ 160 (444)
T 1igt_B 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP--EPVTLTWN 160 (444)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBS--SCCEEEEG
T ss_pred ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeC--CCcEEEEe
Confidence 88776 4999999998764321 00011111 122221 257999999999988643 44 99999
Q ss_pred ECCeeccccc----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE------------------
Q psy15235 146 KGNKSITEAT----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV------------------ 203 (323)
Q Consensus 146 ~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v------------------ 203 (323)
+++..+.... ...+.+ .....|.|.++..+| |.|+|.+ .|..+.. .....+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~Y~C~a-~n~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 235 (444)
T 1igt_B 161 SGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHPASST--KVDKKIEPRGPTIKPCPPCKCPAPNL 235 (444)
T ss_dssp GGTBCTTEEECCCEEETTEE-EEEEEEEECSTTTTT-SCCEEEE-EETTTTE--EEEEECCCCCCSCCCCCCCSCCCSCC
T ss_pred cCCCCCCeEecCccccCCcE-EEEEEEEEchhhcCC-CeEEEEE-EeCCCCc--ceEEEeccCCCCcccCCccccCCccc
Confidence 9987642100 001122 223568898888888 9999999 6664332 12222211
Q ss_pred Eeccee-eeeceeE--EeeCCeEEEEEEEecCC----CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235 204 IMKPTA-KLVETLT--VIEGEKLRLECLVVGSP----PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276 (323)
Q Consensus 204 ~~~p~~-~~~~~~~--~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 276 (323)
..+|.+ ..++... +.+|+.++|.|.+.|.| .+.+.|++++..+...................+.|.|.+++.+
T Consensus 236 ~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 315 (444)
T 1igt_B 236 LGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM 315 (444)
T ss_dssp CCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH
T ss_pred CCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhc
Confidence 113443 2232222 47899999999998874 3589999999876532211111100000113568999999999
Q ss_pred CCeEEEEEEeecccC
Q psy15235 277 DRGNYYCHGNNVATR 291 (323)
Q Consensus 277 d~G~y~C~a~n~~g~ 291 (323)
|.|.|+|.|.|..|.
T Consensus 316 d~G~Y~C~a~n~~~~ 330 (444)
T 1igt_B 316 SGKEFKCKVNNKDLP 330 (444)
T ss_dssp TTCEEEEEEECTTCS
T ss_pred cCCcEEEEEEcCCCC
Confidence 999999999999865
No 59
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.95 E-value=9e-26 Score=176.24 Aligned_cols=184 Identities=21% Similarity=0.340 Sum_probs=141.3
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeec-CCCee
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTV-DDAGQ 180 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~-~d~G~ 180 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ...++. .....|.|.++.. +|+|.
T Consensus 6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~ 79 (212)
T 2yd1_A 6 PPEIIRKPQNQGVRVGGVASFYCAARGDP---PPSIVWRKNGKKVSG---TQSRYTVLEQPGGISILRIEPVRAGRDDAP 79 (212)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCT---TSTTEEEEEETTTEEEEEESSCCTTTTCSE
T ss_pred CCEEEcCCCceEEecCCEEEEEEEEccCC---CCeEEEEECCEECCC---CcceeEEEEcCCCeEEEEEEecCCCCcCce
Confidence 45556667777788999999999999887 679999999988862 134443 2336899999999 99999
Q ss_pred EEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe
Q psy15235 181 YSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR 252 (323)
Q Consensus 181 y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~ 252 (323)
|+|.+ .+..+. .....+.|.|... |.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....+
T Consensus 80 Y~C~~-~n~~g~-~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~ 157 (212)
T 2yd1_A 80 YECVA-ENGVGD-AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR 157 (212)
T ss_dssp EEEEE-ECSSSC-EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTT
T ss_pred EEEEE-EeCCCC-eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCe
Confidence 99999 666322 1456677777764 5454 333566788999999999999999999999999988765555
Q ss_pred eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee-EEEEEEcceecC
Q psy15235 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA-FVYVRVKGKSFG 310 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~-~~~l~v~~~~~~ 310 (323)
+... ...|.|.++..+|+|.|+|.|.|..|. ... .+.|.|.+....
T Consensus 158 ~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 158 YSLK--------DGFLQIENSREEDQGKYECVAENSMGT----EHSKATNLYVKVRRVG 204 (212)
T ss_dssp EEEE--------TTEEEECSCCGGGCEEEEEEEEETTEE----EECCCEEEEEEC---C
T ss_pred EEcc--------CCeEEEccCChhhCEEEEEEeecCCCc----eeEEEEEEEEEecccc
Confidence 5544 468999999999999999999999976 443 477878776543
No 60
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.94 E-value=1.9e-26 Score=193.49 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=156.0
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+.++.+.+|++++|.|.+.+ .+.+.|+|+ |..+... ....+..+..+...+...|.
T Consensus 3 ~l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (344)
T 1za6_B 3 QLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVE 82 (344)
T ss_dssp EEEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred eeeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence 456677788999999999999542 478999996 4433210 01122222222224567788
Q ss_pred Eeecc--cCcceEEEeeccCCccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235 84 IHEAI--LESGYVQSSLFIPRMNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK 149 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~ 149 (323)
|.+++ |+|.|+|.+.+..........+.+ .|.+.. +..|+.++|.|.+.+.+|. .+.|.|++++.
T Consensus 83 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~ 161 (344)
T 1za6_B 83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGAL 161 (344)
T ss_dssp ECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSS-CCCEEETTTTB
T ss_pred ECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECC-CeEEEEecCCc
Confidence 88776 499999999874322111111111 112211 3479999999999987431 26999999987
Q ss_pred ecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE----------------------
Q psy15235 150 SITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD---------------------- 202 (323)
Q Consensus 150 ~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~---------------------- 202 (323)
.+... ...++++ .....|.|.++..+| |.|+|.+ .|..+.......+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 238 (344)
T 1za6_B 162 TSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG 238 (344)
T ss_dssp CTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-BCEEEEE-EEGGGTEEEEEEECCCCC--------------------
T ss_pred cCceeECCCeECCCCCE-EEEEEEEEcHHHcCC-CcEEEEE-EeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence 64210 0012222 223478898888878 9999999 6653221111111111
Q ss_pred EEecceeeeec-eeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCC
Q psy15235 203 VIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADR 278 (323)
Q Consensus 203 v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~ 278 (323)
+..+|.+.+.. ......|..+.|.|.+.|. | .+.+.|++||..+.... ........++. ...+.|.|.....+|.
T Consensus 239 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~g~~~~~s~l~i~~~~~~~~ 317 (344)
T 1za6_B 239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYSKLTVDKSRWQQG 317 (344)
T ss_dssp CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE-ECCCEECTTSCEEEEEEEEECHHHHHTT
T ss_pred CCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE-ecceEECCCCcEEEEEEEEEChHHccCC
Confidence 12345444221 1112346679999999885 4 35899999998775321 11111001111 1245677887777889
Q ss_pred eEEEEEEeeccc
Q psy15235 279 GNYYCHGNNVAT 290 (323)
Q Consensus 279 G~y~C~a~n~~g 290 (323)
|.|+|.|.|...
T Consensus 318 g~YtC~a~~~~l 329 (344)
T 1za6_B 318 NVFSCSVMHEAL 329 (344)
T ss_dssp CEEEEEEECTTS
T ss_pred CeEEEEEEcCCC
Confidence 999999999873
No 61
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=182.57 Aligned_cols=235 Identities=13% Similarity=0.103 Sum_probs=160.0
Q ss_pred EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235 26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP 101 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~ 101 (323)
..+.++.+.+|++++|.|.+ .+.+.+.|+++|..+.... ..........+...|.|.+++. +|.|+|.+.+..
T Consensus 9 ~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 85 (305)
T 2nzi_A 9 EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG 85 (305)
T ss_dssp ECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS---SSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred ecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC---CeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCC
Confidence 34577889999999999994 4668999999998776531 1122222345556777777665 999999999876
Q ss_pred Cccceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235 102 RMNAITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS 164 (323)
Q Consensus 102 ~~~~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~ 164 (323)
+.......+.+ .+....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. ..++. ..
T Consensus 86 g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~ 158 (305)
T 2nzi_A 86 GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQKGQDLIDN----NGHYQVIVTRS 158 (305)
T ss_dssp EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEES---CCEEEEEESSSBCCS----SSSCEEEECSS
T ss_pred CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCC---CCEEEEEECCEECCC----CCcEEEEEcCC
Confidence 65433222222 11234467899999999999988 789999999988765 44443 35
Q ss_pred eeEEEEee-eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE--------------
Q psy15235 165 KDSITIRK-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-------------- 229 (323)
Q Consensus 165 ~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-------------- 229 (323)
...|.|.+ +..+|+|.|+|.+ .|..+ .....+.|.|..+|............+..+.|.|..
T Consensus 159 ~~~l~i~~~~~~~d~G~Y~C~a-~N~~G--~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v 235 (305)
T 2nzi_A 159 FTSLVFPNGVERKDAGFYVVCA-KNRFG--IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235 (305)
T ss_dssp EEEEEETTCCCSTTCEEEEEEE-EETTE--EEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEE
T ss_pred ceEEEEecCCccCccEEEEEEE-EeCCC--ceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEE
Confidence 67899999 9999999999999 77743 345566677765543211111112235556666654
Q ss_pred ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 230 ~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+.+...|.+.+.. ....|+|.++...+.|.|+|.|.|..|.
T Consensus 236 ~~~~~~~~~w~~~~~~------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~ 279 (305)
T 2nzi_A 236 EKCATTAERWLRVGQA------------------RETRYTVINLFGKTSYQFRVIAENKFGL 279 (305)
T ss_dssp EEEETTSCCEEEEEEE------------------SSSEEEECSCCSSCEEEEEEEEEETTEE
T ss_pred EEecCCCCccEECccc------------------cCceEEecCCCCCCeEEEEEEEEeCCcc
Confidence 2222333333332211 1467999999999999999999999987
No 62
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.94 E-value=2.6e-26 Score=198.97 Aligned_cols=250 Identities=16% Similarity=0.240 Sum_probs=160.6
Q ss_pred ecCCcEEEEEEe---ccCc-eEEEEEcCccceeeccCcceEEEeee-eCC----eEEEEEeecc--cCcceEEEeeccCC
Q psy15235 34 MEGAPINISCIL---TIFE-QVKWQLNGRNINQSSVDSGFAATANL-TED----NFKYSIHEAI--LESGYVQSSLFIPR 102 (323)
Q Consensus 34 ~~G~~v~L~C~~---~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~--~~G~Y~C~~~~~~~ 102 (323)
.+|+.+.|.|.+ .|.+ .++|+++|..+..... ....... .++ ...|.|.++. |+|.|+|.+.+..+
T Consensus 129 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 205 (438)
T 1qgc_4 129 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL---NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 205 (438)
T ss_dssp HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE---EEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCce---eccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc
Confidence 468999999994 3455 8999999987654300 0000000 011 2356666655 49999999998776
Q ss_pred ccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccC
Q psy15235 103 MNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSG 159 (323)
Q Consensus 103 ~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~ 159 (323)
...+...+.. .+....+.+|+.++|.|.+.+.+.. .+.+.|+++ +..+.. ......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 1qgc_4 206 TSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFN-RCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKG 284 (438)
T ss_dssp SSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTT
T ss_pred CCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccC-CcEEEEEECCCCCCcEEEEEEeecCCceecCcccCC
Confidence 6433222221 2334457889999999999987621 368999996 443321 011234
Q ss_pred cEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEe----cceee-eeceeEEeeCCeEEE
Q psy15235 160 RLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRL 225 (323)
Q Consensus 160 ~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l 225 (323)
++. .....|.|.+++.+|+|.|+|.+ .|..+. ........+.|.. +|.+. .++...+.+|+.++|
T Consensus 285 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L 363 (438)
T 1qgc_4 285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVR-REDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTL 363 (438)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCCEEEEEE-CCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEE
T ss_pred cEEEEeecCCCeEEEEECCCChhhCEEEEEEE-EccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEE
Confidence 544 12458999999999999999999 763221 1122344566652 44443 333444668999999
Q ss_pred EEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 226 ECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 226 ~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.|.+.|. |.+ .+.|++++..+...... .+.. .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus 364 ~C~~~g~~P~~~~v~W~~~g~~~~~~~~~-~~~~-~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~ 428 (438)
T 1qgc_4 364 GCLVKGYFPEPVTVTWNSGSLSSGVHTFP-AVLQ-SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 428 (438)
T ss_dssp EEEEESCBSSCCEEEEGGGTCCSSEEECC-CEEE-TTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGT
T ss_pred EEEeccccCCCcEEEEecCCCCCceeecC-cccc-CCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCC
Confidence 9999987 887 89999998775421100 0010 1001124579999999989 9999999999965
No 63
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.94 E-value=2.3e-25 Score=171.36 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=139.2
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+........+.. .....|.|.+++.+|+|.|+|.
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 81 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFP---VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecC---CCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence 45555566777788999999999998877 679999999988765221112222 4567899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 185 LIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
+ .+..+ .......+.|. .+|.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+... .++.+.. .
T Consensus 82 ~-~n~~~--~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~--~ 155 (194)
T 2a38_A 82 A-TNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQ--E 155 (194)
T ss_dssp E-EETTE--EEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEE--E
T ss_pred E-EcCCc--eEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC-CcEEEEE--c
Confidence 9 66632 34455566666 355544 334567889999999999999999999999999988643 3343331 1
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
+ ...+|.|.++..+|.|.|+|.|.|..|. ....+.|.|+
T Consensus 156 ~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~ 194 (194)
T 2a38_A 156 G--DLYSLLIAEAYPEDSGTYSVNATNSVGR----ATSTAELLVQ 194 (194)
T ss_dssp T--TEEEEEEEEECGGGCEEEEEEEEETTEE----EEEEEEEEEC
T ss_pred C--CEEEEEECCCChhcCeEEEEEEEeCCCc----eEEEEEEEEC
Confidence 1 2458999999999999999999999966 7777777764
No 64
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.94 E-value=7.9e-25 Score=167.86 Aligned_cols=178 Identities=24% Similarity=0.356 Sum_probs=135.6
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+...+...+...|+.++|.|.+.+.++. .+.+.|++++..+.. .... .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 6 i~~~~~~~v~~~G~~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~----~~~~-~~~~~L~i~~~~~~d~G~Y~C~~-~n~ 78 (190)
T 2wv3_A 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHT-LMYSYWTKNGVELTA----TRKN-ASNMEYRINKPRAEDSGEYHCVY-HFV 78 (190)
T ss_dssp EEECCCEECCCSSSCEEEEEEEEECSSC-EEEEEEEETTEECTT----CCBC-CSEEEEEESSCCGGGCEEEEEEE-EET
T ss_pred ccccceEEEccCCceEEEEEEeccCCCC-ceEEEEEECCEECcc----cceE-eccEEEEEecCCcccCEEEEEEE-EeC
Confidence 3334444444449999999999887721 379999999998865 2222 35678999999999999999999 555
Q ss_pred CCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeeec--cCCeeeeecCCCCCCc
Q psy15235 190 STNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYFR--SQGRIKLSEHPEKGTA 264 (323)
Q Consensus 190 ~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~--~~~~~~~~~~~~~~~~ 264 (323)
......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++ ++..+.. ...++.+.. .+ .
T Consensus 79 ---~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~--~~--~ 151 (190)
T 2wv3_A 79 ---SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN--KE--N 151 (190)
T ss_dssp ---TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE--CS--S
T ss_pred ---CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec--CC--C
Confidence 345677888888888776 3445678899999999999999999999999 7766542 334554441 11 2
Q ss_pred ceeEEEeecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 265 NSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 265 ~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
..+|.|.++. .+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 152 ~~~L~i~~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~ 189 (190)
T 2wv3_A 152 YTELNIVNLQITEDPGEYECNATNSIGS----ASVSTVLRVR 189 (190)
T ss_dssp EEEEEECSCCTTTSCEEEEEEEECSSCE----EEEEEEEEEE
T ss_pred eeEEEEEeccccCCCEEEEEEEEecCCc----ceeEEEEEEE
Confidence 4689999999 79999999999999966 7777777764
No 65
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.94 E-value=8.1e-25 Score=168.64 Aligned_cols=182 Identities=20% Similarity=0.325 Sum_probs=141.3
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+
T Consensus 7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 79 (197)
T 3lcy_A 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRP---LPDIKWYRFGKELIQ----SRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79 (197)
T ss_dssp EEEEEECCCCEEEETTSEEEEEEEEEEES---CCEEEEEETTEEECC----CSSEEEEESSSEEEEEEECCSGGGCEEEE
T ss_pred CCcccccCCceEEeCCCcEEEEEEEecCC---CCEEEEEECCEECCC----CccEEEEeCCCEEEEEEecCCccCCEEEE
Confidence 45555566667788999999999998877 679999999998866 44443 33458999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceee----eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~ 258 (323)
|.+ .+.. ........+.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+..
T Consensus 80 C~~-~n~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~- 154 (197)
T 3lcy_A 80 CIA-TNEV--GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS-ENITIEN- 154 (197)
T ss_dssp EEE-ECSS--CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEE-
T ss_pred EEE-ECCC--CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC-CceEEEE-
Confidence 999 6663 334556677777766544 234556788999999999999999999999999888643 3443331
Q ss_pred CCCCCcceeEEEeecCc-CCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 259 PEKGTANSVLQIDEATM-ADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 259 ~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
......|.|.++.. +|+|.|+|.|.|..|. ....+.|.|.++
T Consensus 155 ---~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~k 197 (197)
T 3lcy_A 155 ---TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT----VDAILDVEIQDK 197 (197)
T ss_dssp ---CSSEEEEEESSCCHHHHCEEEEEEEECSSCE----EEEEEEEEEECC
T ss_pred ---cCCEEEEEEccccchhhCceEEEEEEcCcCc----eEEEEEEEEecC
Confidence 01247899999985 8999999999999965 788888888764
No 66
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.94 E-value=4.1e-25 Score=169.64 Aligned_cols=172 Identities=24% Similarity=0.483 Sum_probs=135.0
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
...+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.+++.+|+|.|+|.+ .+.. .
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~~~--~ 82 (192)
T 2va4_A 13 NATAERGEEMTFSCRASGSP---EPAISWFRNGKLIEE----NEKYILKGSNTELTVRNIINSDGGPYVCRA-TNKA--G 82 (192)
T ss_dssp EEETTSCCCEEEECEEECSS---CCEEEEEETTEECCC----SSSEEEETTTTEEEECSCCGGGCEEEEEEE-EETT--E
T ss_pred EEEEecCCCEEEEEeeccCC---CCeEEEEECCeEcCC----CccEEEeCCeeEEEEecCChhcCcEEEEEE-Eccc--c
Confidence 44577899999999999887 679999999998876 44444 45568999999999999999999 6653 3
Q ss_pred CCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeeecc----CCeeeeecCCCCCCccee
Q psy15235 194 TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYFRS----QGRIKLSEHPEKGTANSV 267 (323)
Q Consensus 194 ~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~ 267 (323)
.....+.|.|..+|.+.......+.+|+.+.|.|.+.|+|.+.+.|+++ +..+... ..++.... ......
T Consensus 83 ~~~~~~~l~V~~~p~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (192)
T 2va4_A 83 EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG----QHGSSS 158 (192)
T ss_dssp EEEEEEEEEEEEEEEEEEECCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEE----ETTEEE
T ss_pred ccceEEEEEEEccCcccccCcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEee----ccCceE
Confidence 3446677888888877766667788899999999999999999999998 5444321 22333221 012578
Q ss_pred EEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 268 LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 268 L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
|.|.++..+|+|.|+|.|.|..|. ....+.|.|+
T Consensus 159 L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~ 192 (192)
T 2va4_A 159 LHIKDVKLSDSGRYDCEAASRIGG----HQKSMYLDIE 192 (192)
T ss_dssp EEEESCCGGGCEEEEEEEECSSCE----EEEEEEEEEC
T ss_pred EEEecCCcccCEEEEEEEEecCCc----eEEEEEEEeC
Confidence 999999999999999999999965 7788888774
No 67
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.94 E-value=4.1e-25 Score=170.44 Aligned_cols=182 Identities=21% Similarity=0.328 Sum_probs=140.4
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y 181 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+... ..++. .....|.|.+++.+|+|.|
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 77 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASVTDDDATVY 77 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCCC---SSSEEEEEETTTEEEEEECSCCGGGCSEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecC---CCEEEEEECCEECccC---CCcEEEEEcCCCEEEEEECcCCHHhCEEE
Confidence 34555566667788999999999999877 6899999999887641 22332 2334899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceeeee------ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
+|.+ .+.. ......+.|.|..+|.+..+ ....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+
T Consensus 78 ~C~~-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~ 153 (197)
T 2j8h_A 78 QVRA-TNQG--GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQV 153 (197)
T ss_dssp EEEE-EETT--EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS-SSCEE
T ss_pred EEEE-EECC--CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC-CCEEE
Confidence 9999 6663 33466777778776655422 3456788999999999999999999999999888633 34443
Q ss_pred ecCCCCCCcceeEEEee-cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 256 SEHPEKGTANSVLQIDE-ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~-v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.. . .....|.|.+ +..+|+|.|+|.|.|..|. ....+.|.|.+
T Consensus 154 ~~--~--~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~d 197 (197)
T 2j8h_A 154 IV--T--RSFTSLVFPNGVERKDAGFYVVCAKNRFGI----DQKTVELDVAD 197 (197)
T ss_dssp EE--C--SSEEEEECTTCCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred EE--c--CCceEEEEeCCCCcccCEeEEEEEEeCCCc----EeEEEEEEEeC
Confidence 31 1 1357899999 9999999999999999966 78888888753
No 68
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=171.04 Aligned_cols=181 Identities=20% Similarity=0.355 Sum_probs=133.3
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
+.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ....++. .....|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~- 76 (189)
T 2v5t_A 3 LTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTT--ISDNRFAMLANNNLQILNINKSDEGIYRCEG- 76 (189)
T ss_dssp CEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEC-----CB--CCCTTEEECTTSCEEETTCCGGGCEEEEEEE-
T ss_pred ceeeccCCCEEEeCCCcEEEEEEEcCCC---CCEEEEEECCcccee--ccCCeEEEecCCCEEEeeCCHhHCcEEEEEE-
Confidence 3444566667788999999999999877 689999999887653 1234444 44567999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 187 DPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+..+.......+.+.+..+|.+.... ...+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++....
T Consensus 77 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~------ 149 (189)
T 2v5t_A 77 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG------ 149 (189)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS-SSEEEET------
T ss_pred EEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC-CcEEEec------
Confidence 555333333455667777777665322 345678999999999999999999999999987644 3333331
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
....|+|.++..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 150 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~ 187 (189)
T 2v5t_A 150 SNTELTVRNIINSDGGPYVCRATNKAGE----DEKQAFLQVF 187 (189)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred CCCEEEEcCCChhhCeeEEEEEEeCCCc----eeEEEEEEEE
Confidence 3578999999999999999999999976 6666666654
No 69
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.94 E-value=7.2e-24 Score=180.79 Aligned_cols=252 Identities=12% Similarity=0.137 Sum_probs=166.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEe--ccCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCIL--TIFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQS 96 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~ 96 (323)
+.+..+.+..+.+|+++.|.|.+ .|.+.++|+|+ |..+..........+......+...|.|.+++ |+|.|+|.
T Consensus 2 P~i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 81 (389)
T 2jll_A 2 PHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 81 (389)
T ss_dssp CEEEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred CeEEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEE
Confidence 34556777889999999999994 46789999998 76665432111122223333455667777665 49999999
Q ss_pred eeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235 97 SLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS 164 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~ 164 (323)
+.+..+.......+.+ .+....+..|+.+.|.|.+.+.| .+.+.|++++..+.... ..++. ..
T Consensus 82 a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~i~W~~~g~~l~~~~--~~~~~~~~~~~ 156 (389)
T 2jll_A 82 AASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNP---PASIHWRRDKLVLPAKN--TTNLKTYSTGR 156 (389)
T ss_dssp EECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEES---CCEEEEEETTEESSCTT--CTTEEEEECSS
T ss_pred EEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecC---CCeEEEEECCccCCccc--CceEEEeccCC
Confidence 9987766432222222 33334577899999999999988 78999999999886521 11332 34
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe----cCCCC--cEE
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV----GSPPP--TVE 238 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~----g~p~~--~~~ 238 (323)
...|.|.++..+|+|.|+|.| .|..+. ......+.+...|............+..+.|.|... |.|.. .+.
T Consensus 157 ~~~L~i~~~~~~d~G~Y~C~a-~N~~G~--~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~ 233 (389)
T 2jll_A 157 KMILEIAPTSDNDFGRYNCTA-TNHIGT--RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233 (389)
T ss_dssp CEEEEECCCSTTSSEEEEEEE-EETTEE--EEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEE
T ss_pred EEEEEECCCChhhCEEEEEEE-EcCCCc--EEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEE
Confidence 568999999999999999999 676433 344455555444321111112233467899999852 22322 477
Q ss_pred EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|.+++.... .... . ......+.|.++...+.+.|+|.|.|..|.
T Consensus 234 ~~~~~~~~~-----~~~~--~--~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~ 277 (389)
T 2jll_A 234 VKEVASEIW-----KIVR--S--HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277 (389)
T ss_dssp EEETTCSCC-----EEEE--C--STTCSEEEECSCCTTCEEEEEEEEEESSCB
T ss_pred EEECCCccc-----EEee--c--cCCcceEEECCccCCCEEEEEEEEEcCCcc
Confidence 877654211 0111 0 013467999999999999999999999987
No 70
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.94 E-value=7.6e-25 Score=167.79 Aligned_cols=177 Identities=25% Similarity=0.405 Sum_probs=134.6
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C 183 (323)
.+...+....+.+|++++|.|.+.+.+ . .+.|++ ++..+.. ..++. .....|.|.++..+|+|.|+|
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p---~-~v~W~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 75 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIIS----TQRVVVQKEGVRSRLTIYNANIEDAGIYRC 75 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECC---S-EEEEECTTSCBCCC----CSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred EEEecCCceEEecCCcEEEEEEeecCC---e-eEEEEeCCCCccCC----CceEEEECCCCeEEEEEccCCcccCeEEEE
Confidence 344467777888999999999999877 5 899999 7777655 44444 334689999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCCCC
Q psy15235 184 RLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHPEK 261 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ 261 (323)
.+ .+..+. .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.. ...++...
T Consensus 76 ~~-~~~~g~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~----- 148 (189)
T 2v44_A 76 QA-TDAKGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML----- 148 (189)
T ss_dssp EE-ECTTSC-EEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEEC-----
T ss_pred EE-EeCCCC-cEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEe-----
Confidence 99 666332 23567778888777665 44456788999999999999999999999999987753 33455444
Q ss_pred CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 262 GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
....|.|.++..+|+|.|+|.|.|..|. ......+.|.|
T Consensus 149 --~~~~L~i~~v~~~d~G~Y~C~a~n~~~~--~~~~~~~~v~V 187 (189)
T 2v44_A 149 --ANNNLQILNINKSDEGIYRCEGRVEARG--EIDFRDIIVIV 187 (189)
T ss_dssp --TTSCEEETTCCGGGCEEEEEEEEETTTT--EEEEEEEEEEE
T ss_pred --cCCcEEEEEcCcccCeEEEEEEEccccC--ceeeeeEEEEE
Confidence 3568999999999999999999999865 22334444444
No 71
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.94 E-value=9.8e-25 Score=170.35 Aligned_cols=185 Identities=22% Similarity=0.299 Sum_probs=135.1
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeee-cCCCe
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTT-VDDAG 179 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~-~~d~G 179 (323)
..|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.. ..... .....|.|.++. .+|+|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~d~G 77 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDP---RPKIVWNKKGKKVSN----QRFEVIEFDDGSGSVLRIQPLRTPRDEA 77 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----TTEEEEEEGGGTEEEEEECSCCTTTTCE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCC---CCEEEEEECCcCCCC----CceeEEEEcCCCceEEEEeccCCCCCCe
Confidence 356666677777788999999999999877 689999999988865 22111 245679999994 99999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc--
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-- 249 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-- 249 (323)
.|+|.+ .+.. ......+.|.|... |.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+...
T Consensus 78 ~Y~C~a-~n~~--g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~ 154 (212)
T 2yd6_A 78 IYECVA-SNNV--GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN 154 (212)
T ss_dssp EEEEEE-EETT--EEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC-----
T ss_pred EEEEEE-EcCC--CcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCC
Confidence 999999 6663 23455667777654 4444 333556788999999999999999999999999987643
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
..++.... . .....|.|.++..+|+|.|+|.|.|..|.. ....+.|.|...
T Consensus 155 ~~~~~~~~--~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~---~s~~a~l~~~~~ 205 (212)
T 2yd6_A 155 NGRIKQLR--S--ESIGALQIEQSEESDQGKYECVATNSAGTR---YSAPANLYVRGT 205 (212)
T ss_dssp -CCEEEEE--E--TTEEEEEECSCCGGGCEEEEEEEEETTEEE---ECCCEEEEEEC-
T ss_pred CceEEEEe--c--CCeEEEEEcCCCcccCEEEEEEEECCCCcc---ccccccEEEEec
Confidence 23333321 0 125899999999999999999999999872 233444444443
No 72
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.94 E-value=4.1e-25 Score=169.69 Aligned_cols=183 Identities=23% Similarity=0.344 Sum_probs=139.4
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ...++. .....|.|.+++.+|+|.|+|.
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p---~~~i~W~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAVESYP---QPEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCEEEES---CCEEEEEETTEECCT---TCTTEEEEGGGTEEEESSCCGGGCEEEEEE
T ss_pred CceeecCccceeeeCCCcEEEEeeCCCCC---CCeEEEEECCEEccc---cCccEEEcCCccEEEEcCCCcccCeEEEEE
Confidence 34444566666788999999999999877 679999999988754 133443 3455799999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEEEecceeee-eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 185 LIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
+ .+..+. .......+.|..+|.+.. +....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++...
T Consensus 81 ~-~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~------- 150 (192)
T 2iep_A 81 A-NNGVGG-AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-SRIAVL------- 150 (192)
T ss_dssp E-ECSSSC-CEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC-SSEEEC-------
T ss_pred E-EcCCCc-eeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC-CcEEEe-------
Confidence 9 665322 234566778887777663 34567889999999999999999999999999887644 344443
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
....|.|.++..+|+|.|+|.|.|..|. .....+.|.|..+|
T Consensus 151 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~pp 192 (192)
T 2iep_A 151 ESGSLRIHNVQKEDAGQYRCVAKNSLGT---AYSKLVKLEVEVFA 192 (192)
T ss_dssp TTSCEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEEC--
T ss_pred cCCcEEEecCChhhCEEEEEEEEcCCCc---EEEEEEEEEEEeCC
Confidence 2568999999999999999999999976 12445777776553
No 73
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.93 E-value=6.4e-26 Score=209.99 Aligned_cols=262 Identities=16% Similarity=0.163 Sum_probs=106.4
Q ss_pred eeceEEecC--CcEEEEEEec-cCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCC
Q psy15235 28 FGDTEIMEG--APINISCILT-IFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPR 102 (323)
Q Consensus 28 ~~~~~v~~G--~~v~L~C~~~-~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~ 102 (323)
+..+.+.+| ++++|.|.+. +.+.++|+++ +..+... +..... .....+.+......|.|.|+|.+.+...
T Consensus 133 ~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~----~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 207 (772)
T 3v2a_R 133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD----GNRISW-DSKKGFTIPSYMISYAGMVFCEAKINDE 207 (772)
T ss_dssp EEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCC----SSSCEE-ETTTEEEEEGGGTTTCSEEEEEEEETTE
T ss_pred ceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCC----Cceeec-CCCCCeEecCCChhhCeEEEEEEEECCc
Confidence 345678889 9999999943 5689999997 6554432 111111 1233344443444459999999986533
Q ss_pred ccc-----------eeeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC--------cEE
Q psy15235 103 MNA-----------ITGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG--------RLT 162 (323)
Q Consensus 103 ~~~-----------~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~--------~~~ 162 (323)
... ..+.+.+ .+....+.+|+.++|.|.+.+.+.. ...+.|++++..+........ ...
T Consensus 208 ~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (772)
T 3v2a_R 208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286 (772)
T ss_dssp EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTC-CCEEEEECC--------CEEEEC-----CCCE
T ss_pred eEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCC-ceeEEEecCCccCCCceeeeccccccccccce
Confidence 211 0112222 2233467889999999999874311 579999999876543100000 112
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee----ceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV----ETLTVIEGEKLRLECLVVGSPPPTVE 238 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~~~ 238 (323)
.....|.|.+++.+|+|.|+|.+ .+.. ......+.|.|..+|.+... ....+.+|+.+.|.|.+.|+|.+.+.
T Consensus 287 ~~~~~L~i~~v~~~d~G~Y~C~~-~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~ 363 (772)
T 3v2a_R 287 KFLSTLTIDGVTRSDQGLYTCAA-SSGL--MTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363 (772)
T ss_dssp EEEEEEEESSCCSTTCSEEEEEE-ECSS--CEEEEEEEEEEECCCC----------------------------------
T ss_pred EEEEEEEECcCCcCCCeEEEEEE-EcCC--cceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEE
Confidence 35568999999999999999999 6663 33566778888888765522 34568899999999999999999999
Q ss_pred EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
|+++|..+... ..+. ....|.|.++..+|+|.|+|.|.|..|. ......+.|.|..+|..
T Consensus 364 W~~~g~~l~~~---~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~s~~~~l~v~~~P~~ 423 (772)
T 3v2a_R 364 WYKNGIPLESN---HTIK-------AGHVLTIMEVSERDTGNYTVILTNPISK--EKQSHVVSLVVYVPPQI 423 (772)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEECCEeCCCC---ceEc-------cceeEEEecCChhcCceEEEEEEECCcC--eEEEEEEEEEEecCCcc
Confidence 99999877531 1111 2588999999999999999999999875 22355666777666554
No 74
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.93 E-value=9.3e-25 Score=169.37 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=123.3
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----e--ceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----Q--SKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~--~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
..+.+|+.+.|.|.+.+..| .+.|+|++||.++.. +.++. . ....|.|.+++.+|+|.|+|.+ .|.
T Consensus 12 ~~v~eg~~v~l~c~~~~~~P--~p~i~W~kng~~l~~----~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-~Ng- 83 (207)
T 3rbs_A 12 VEILEKGQVRFWMQAEKLSG--NAKVNYIFNEKEIFE----GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDG- 83 (207)
T ss_dssp EEECGGGCEEEEEECSCCCS--CCEEEEEETTEEECS----SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE-EET-
T ss_pred eEEEeCCeEEEEEEEecCCC--CCEEEEEECCEECcc----CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE-ECC-
Confidence 34678999999999976433 789999999999976 33332 1 3457999999999999999999 552
Q ss_pred CCCCCceeeeeEEE---------------------ecceeeeeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeec
Q psy15235 191 TNTTPLAQADFDVI---------------------MKPTAKLVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFR 248 (323)
Q Consensus 191 ~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~ 248 (323)
. ......+.+. .+|.+..+....+.+|+.+.|.|.+.|. |.|.+.|++++..+..
T Consensus 84 -~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~ 160 (207)
T 3rbs_A 84 -K--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 160 (207)
T ss_dssp -T--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC
T ss_pred -C--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC
Confidence 1 1122222110 1354443335678899999999999998 9999999999999865
Q ss_pred cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
+. ++... ....+|.|.++..+|+|.|+|.|.|..|. ..+.+.|.++
T Consensus 161 ~~-~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~L~~~ 206 (207)
T 3rbs_A 161 DE-KHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGK----DKSRLKLVDE 206 (207)
T ss_dssp CC-CCCCS------SEEEEEEETTCCGGGCEEEEEEEEETTEE----EEEEEEECCC
T ss_pred CC-ceEcC------CCEEEEEECCCCcccCEEEEEEEEcCCCE----EEEEEEEecC
Confidence 32 32211 13567999999999999999999999966 7777776543
No 75
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.93 E-value=4.2e-25 Score=191.75 Aligned_cols=251 Identities=14% Similarity=0.246 Sum_probs=152.4
Q ss_pred EecCCcEEEEEEec---cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcccee
Q psy15235 33 IMEGAPINISCILT---IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMNAIT 107 (323)
Q Consensus 33 v~~G~~v~L~C~~~---~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~~~ 107 (323)
+.+|+.++|.|.+. |.+ .++|++++..+....... .. ..........|.|.++.. .|.|+|.+.+..+.....
T Consensus 135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~-~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~ 212 (444)
T 1igt_B 135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VL-QSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVD 212 (444)
T ss_dssp CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE-ETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEE
T ss_pred CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-cc-cCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceE
Confidence 47899999999953 455 999999987643211000 00 000001112456666542 399999999887653221
Q ss_pred ee--------------------------eee-CCceeE-EecCCcEEEEEEeecCC--CCCCceEEEEECCeeccccccc
Q psy15235 108 GN--------------------------YDI-EPKYKV-FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATEL 157 (323)
Q Consensus 108 ~~--------------------------~~~-~~~~~~-~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~~ 157 (323)
.. +.+ .+.... +..|+.++|.|.+.+.+ |. .+.|.|++++..+......
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~ 291 (444)
T 1igt_B 213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQ 291 (444)
T ss_dssp EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCC-CCEEEEEETTEECSSTTCB
T ss_pred EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCC-CeEEEEEECCccccCcccc
Confidence 11 111 121111 36799999999999873 21 4799999999877541111
Q ss_pred c------CcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEE
Q psy15235 158 S------GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECL 228 (323)
Q Consensus 158 ~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~ 228 (323)
. +.+ .....|.|.++..+|+|.|+|.| .|..+.......+.+ .+..+|.+.+.. ......+..++|.|.
T Consensus 292 ~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a-~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~ 369 (444)
T 1igt_B 292 THREDYNSTL-RVVSALPIQHQDWMSGKEFKCKV-NNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCM 369 (444)
T ss_dssp CCEEECSSSE-EEEEEEECCHHHHHTTCEEEEEE-ECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEE
T ss_pred cceeCCCCcE-EEEEEEEEcHHHhccCCcEEEEE-EcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEE
Confidence 0 111 23457999999999999999999 676443322233222 344566665322 111123445999999
Q ss_pred Eec-CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 229 VVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 229 ~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+.| .|++ .+.|+++|..+... .........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus 370 ~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 370 VTDFMPEDIYVEWTNNGKTELNY-KNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp EEEEBSSCCEEEEEETTEECSSE-EECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred EEeeeCCCCEEEEEECCEEcccc-ccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence 988 4665 89999999887421 111110001111 134567888888888999999999986
No 76
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.93 E-value=1e-24 Score=167.29 Aligned_cols=168 Identities=26% Similarity=0.435 Sum_probs=131.6
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C 183 (323)
+.+.|....+.+|+.++|.|.+.+.++ .+.+.|++ ++..+... ..++. .....|.|.+++.+|+|.|+|
T Consensus 5 v~~~p~~~~v~~G~~v~l~C~~~~~~~--~~~v~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 5 VDIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp EEEESSSEEEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECCB---SSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred EEecCCCcEEcCCCCEEEEEECCCCCC--CceEEEEeCCCccccCC---CCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence 444566677889999999999988764 57999999 88777631 33333 346789999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCC
Q psy15235 184 RLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEK 261 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~ 261 (323)
.+ .+..+ ......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... ..++...
T Consensus 80 ~~-~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~----- 152 (191)
T 1epf_A 80 VV-TAEDG-TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----- 152 (191)
T ss_dssp EE-EETTT-EEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC-----
T ss_pred EE-EcCCC-cceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe-----
Confidence 99 56532 345667777777777665 344567889999999999999999999999999887543 2344444
Q ss_pred CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 262 GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
....|.|.++..+|+|.|+|.|.|..|.
T Consensus 153 --~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (191)
T 1epf_A 153 --SNNYLQIRGIKKTDEGTYRCEGRILARG 180 (191)
T ss_dssp --TTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred --cCCeEEECCCChhhCEEEEEEEEEecce
Confidence 3558999999999999999999999854
No 77
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.93 E-value=9.5e-25 Score=169.11 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=131.7
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+.+.|....+.+|++++|.|.+.+.++ ...+.|+++|..+.. ....|.|.+++.+|+|.|+|.+ .
T Consensus 8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~--~~~v~W~k~g~~l~~----------~~~~L~i~~v~~~D~G~Y~C~a-~ 74 (204)
T 3sgj_C 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPE--DQSTQWFHNESLISS----------QASSYFIDAATVDDSGEYRCQT-Q 74 (204)
T ss_dssp CEEEEESCCSEEETTCCEEEEEECCSSSS--CCCEEEEETTEEESC----------CSSEEEESSCCGGGCEEEEEEE-T
T ss_pred CeEEEcCCCeEEECCCCEEEEEcCCCCCC--CcEEEEEECCEEccc----------CccEEEEecccccCCEEEEEEe-C
Confidence 34455555566889999999999998773 335999999998865 2378999999999999999999 6
Q ss_pred CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235 188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS 266 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
+. ..+..+.|.|..+|.+...+...+.+|+.++|.|.+.+. |.+.+.|++++..+.... ...
T Consensus 75 n~----~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~ 137 (204)
T 3sgj_C 75 LS----TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------------HNS 137 (204)
T ss_dssp TS----BCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECC
T ss_pred CC----cccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------------CCc
Confidence 64 456677888888776665556778899999999999665 567899999998764211 257
Q ss_pred eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.|.|.+++.+|+|.|+|.|.|..+ +..+..+.|.|.+.+..
T Consensus 138 ~L~i~~v~~~D~G~Y~C~a~n~~~---~~~s~~~~l~V~~~~~~ 178 (204)
T 3sgj_C 138 DFYIPKATLKDSGSYFCRGLVGSK---NVSSETVQITITQGLAV 178 (204)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTE---EEECCCEEEEEEC----
T ss_pred eEEECcCCcccCEEEEEEEEeCCC---ceecCcEEEEEeCcCCC
Confidence 899999999999999999999542 23667778888776543
No 78
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.93 E-value=6.9e-24 Score=173.06 Aligned_cols=186 Identities=26% Similarity=0.397 Sum_probs=146.5
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...|....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.+++.+|+|.|+
T Consensus 5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 77 (284)
T 2rik_A 5 PPFFDLKPVSVDLALGESGTFKCHVTGTA---PIKITWAKDNREIRP----GGNYKMTLVENTATLTVLKVTKGDAGQYT 77 (284)
T ss_dssp CCEEEECCCCEEEETTCCEEEEEEEESSS---CCEEEEEETTEECCS----SSSEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEccccceEecCCCcEEEEEEEEcCC---CCEEEEEECCEECcC----CCcEEEEEcCCEEEEEEecCCcccCEEEE
Confidence 45556677777788999999999999887 679999999998876 33332 45688999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
|.+ .+.. ......+.|.|..+|.+. ......+.+|+.+.|.|.+.|+|.+.+.|++++..+.... ++......
T Consensus 78 C~~-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~- 152 (284)
T 2rik_A 78 CYA-SNVA--GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVE- 152 (284)
T ss_dssp EEE-EETT--EEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSS-SEEEEEET-
T ss_pred EEE-EECC--ceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCC-cEEEEEcC-
Confidence 999 6663 335667788888877654 2334568899999999999999999999999998876443 22222101
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|...
T Consensus 153 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~~ 196 (284)
T 2rik_A 153 ---SVAVLEMYNLSVEDSGDYTCEAHNAAGS----ASSSTSLKVKEPPVFR 196 (284)
T ss_dssp ---TEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEEECCCBCC
T ss_pred ---CEEEEEECCCCcccCEEEEEEEEcCCCc----eeEEEEEEEecCCcce
Confidence 3578999999999999999999999865 7788888888776544
No 79
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.93 E-value=9.9e-25 Score=165.02 Aligned_cols=167 Identities=21% Similarity=0.323 Sum_probs=130.2
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+.+.|....+.+|+.++|.|.+.+.++ ...+.|++++..+.. ....|.|.+++.+|+|.|+|.+
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~--~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~- 73 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPE--DNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQT- 73 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTT--BCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEEC-
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCC--CcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEe-
Confidence 344555666566889999999999988773 235899999988764 4568999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235 187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN 265 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
.+. .....+.|.|..++.+.......+.+|+.+.|.|.+.+.|++ .+.|++++..+... . ..
T Consensus 74 ~n~----~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~-------~~ 136 (175)
T 1fnl_A 74 NLS----TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H-------HN 136 (175)
T ss_dssp SSS----CCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E-------EC
T ss_pred eCC----cccccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C-------CC
Confidence 664 235667777776655544455678899999999999887665 99999999887421 1 25
Q ss_pred eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
..|.|.+++.+|+|.|+|.|.|..|. ..+..+.|.|.+
T Consensus 137 ~~L~i~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~ 174 (175)
T 1fnl_A 137 SDFHIPKATLKDSGSYFCRGLVGSKN---VSSETVNITITQ 174 (175)
T ss_dssp CCEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEEC
T ss_pred CEEEEcccChhhCeEEEEEEEcCCCC---ccCccEEEEEeC
Confidence 78999999999999999999997643 355667777765
No 80
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=1.3e-24 Score=169.46 Aligned_cols=185 Identities=19% Similarity=0.281 Sum_probs=137.6
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y 181 (323)
+...+....+.+|++++|.|.+.+.+ .+.+.|++++..+.. ......++......|.|.+++.+|+|.|
T Consensus 4 v~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y 80 (212)
T 1f97_A 4 VYTAQSDVQVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80 (212)
T ss_dssp EECSCSEEEEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred EEecCCCeEEEcCCCEEEEeEeCCCC---CcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence 34466667788999999999999877 789999998765321 1122455554448899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEE-EecCCCCcEEEEECCe-eeeccCC-------
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECL-VVGSPPPTVEWRIGND-TYFRSQG------- 251 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~~~-~~~~~~~------- 251 (323)
+|.+ .+..+.......+.|.|..+|.+. .+....+.+|+.+.|.|. +.++|.+.+.|++++. .+.....
T Consensus 81 ~C~~-~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~ 159 (212)
T 1f97_A 81 TCMV-SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159 (212)
T ss_dssp EEEE-EETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred EEEE-EccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence 9999 665443345677788888777554 344566889999999999 6889999999999998 7654322
Q ss_pred -eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 252 -RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 252 -~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
++... .....|.|.++..+|.|.|+|.|.|..|. ...+..+.|.|.+
T Consensus 160 ~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~s~~~~l~V~~ 207 (212)
T 1f97_A 160 SSFTID------PKSGDLIFDPVTAFDSGEYYCQAQNGYGT--AMRSEAAHMDAVE 207 (212)
T ss_dssp SCEEEC------TTTCCEEESSCCGGGCEEEEEEEECSSSC--CEECCCEEEEEES
T ss_pred ceeEec------CCCceEEEEecChhhCcEEEEEEccccCC--ccccceEEEEEEE
Confidence 11111 13678999999999999999999999976 2235667777765
No 81
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=5e-24 Score=162.17 Aligned_cols=170 Identities=20% Similarity=0.322 Sum_probs=131.2
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~ 182 (323)
.+...|....+.+|++++|.|.+.+.+ .+.+.|++++..+.. ..+.. .....|.|.+++.+|+|.|+
T Consensus 4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 76 (182)
T 1rhf_A 4 KLMGAPVKLTVSQGQPVKLNCSVEGME---EPDIQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76 (182)
T ss_dssp ---CCCEEEEEETTCCEEEEEEEESCS---SCCEEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCcceEEeCCCcEEEEEEEeCCC---CCeEEEEECCeecCC----CCceEEEecCCCceEEEEEeecCcccCeEEE
Confidence 344466667788999999999999877 689999999988876 33222 12478999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceeee-eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
|.+ .+..+ ......+.|.|..+|.+.. +....+.+|+.+.|.|.+.|+|.| .+.|++++..+.....
T Consensus 77 C~~-~~~~~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--------- 145 (182)
T 1rhf_A 77 CQV-EDGGE-TEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------- 145 (182)
T ss_dssp EEE-SSCTT-CEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------
T ss_pred EEE-EcCCC-cEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---------
Confidence 999 66522 2345677888888887763 445678899999999999999999 9999999988743211
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc-eeEEEEEEc
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN-EAFVYVRVK 305 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~-~~~~~l~v~ 305 (323)
....|.|.++ +|+|.|+|.|.|..|. . ...+.|.|+
T Consensus 146 ---~~~~L~i~~~--~d~G~Y~C~a~N~~g~----~~s~~~~l~Vk 182 (182)
T 1rhf_A 146 ---SPSVLNVTGV--TQSTMFSCEAHNLKGL----ASSRTATVHLQ 182 (182)
T ss_dssp ---SSEEEEECCC--SSCEEEEEEEEETTEE----EECCCEEEEEC
T ss_pred ---CceEEEEecc--ccCeEEEEEEECCCCC----cccceEEEEeC
Confidence 3688999988 5899999999999976 3 346666653
No 82
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.93 E-value=3.1e-25 Score=171.19 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=116.2
Q ss_pred eEEecCCcEEEEEE---eecCCCCCCceEEEEECCeeccc-------------cccccCcEE----eceeEEEEeeeecC
Q psy15235 117 KVFEYRVPFTLKCN---VTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 117 ~~~~~g~~v~l~C~---~~~~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
..+..|++++|.|. +.+.| .+.|+|+|+|..... ......++. .....|.|.+++.+
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p---~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 79 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGP---EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 79 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCST---TSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEEcCCCEEEEeeeeccCCCC---CcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH
Confidence 45678999999995 45556 789999998753321 001112222 44678999999999
Q ss_pred CCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec---cCCe
Q psy15235 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---SQGR 252 (323)
Q Consensus 177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~---~~~~ 252 (323)
|+|.|+|.+ .|. .......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.. .+.+
T Consensus 80 D~G~Y~C~a-~n~--~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r 156 (203)
T 4fa8_A 80 HDGNYLCRM-KLG--ETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 156 (203)
T ss_dssp GCEEEEEEE-EET--TEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred HCeEEEEEE-EcC--CCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence 999999999 665 3345667788888888776 34456678899999999999999999999987765432 2334
Q ss_pred eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.+. .++ .-..|.|.++..+|+|.|+|.|.|..|.
T Consensus 157 ~~~~--~~g--~l~il~i~~v~~~D~G~YtC~A~N~~G~ 191 (203)
T 4fa8_A 157 VMKE--KDG--SLSVAVDLSLPKPWHLPVTCVGKNDKEE 191 (203)
T ss_dssp CEEC--TTS--CEEEEEEEEECSSCCCCEEEEEESSSCE
T ss_pred EEEe--CCC--CEEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence 4443 111 1244566799999999999999999976
No 83
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.93 E-value=6.2e-25 Score=191.36 Aligned_cols=260 Identities=14% Similarity=0.183 Sum_probs=151.7
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+..+.+.+|++++|.|.+.+ .+.+.|+|+ |..+... ....+..+..+...+...|.
T Consensus 3 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (457)
T 1hzh_H 3 QLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME 82 (457)
T ss_dssp EEEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred eEecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEE
Confidence 455667788999999999999542 468999994 3322110 01122222222224567788
Q ss_pred Eeecc--cCcceEEEeeccCC------------ccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCC
Q psy15235 84 IHEAI--LESGYVQSSLFIPR------------MNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPG 137 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~~~------------~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~ 137 (323)
|.+++ |+|.|+|.+.+..+ .......+.+ .|.+.. +.+|+.++|.|.+.+..|.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~ 162 (457)
T 1hzh_H 83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 162 (457)
T ss_dssp ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence 87766 49999999987643 1100111111 122111 3579999999999987442
Q ss_pred CCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE--------
Q psy15235 138 DDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI-------- 204 (323)
Q Consensus 138 ~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~-------- 204 (323)
.+.|.|++++..+... ...++++ .....|.|.++..+| |.|+|.+ .|..+. ......+.+.
T Consensus 163 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~~~--~~~~~~v~~~~~~~~~~~ 236 (457)
T 1hzh_H 163 -PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHKPSN--TKVDKKAEPKSCDKTHTC 236 (457)
T ss_dssp -CCEEEETTTTBCTTEEEEEEEECTTSCE-EEEEEEEECSGGGGT-SCCEEEE-EEGGGT--EEEEEECCCCCSCSSCSC
T ss_pred -CeEEEEEeCCEeccceEcCceECCCCCE-EEEEEEEecccccCC-ceEEEEE-EeCCCC--cceeEEecccCCCccccc
Confidence 2799999998654320 0011222 223578999999889 9999999 665322 1122222211
Q ss_pred ---------eccee-eeecee--EEeeCCeEEEEEEEecCCCC----cEEEEECCeeeeccCCeeeeecCCCCC--Ccce
Q psy15235 205 ---------MKPTA-KLVETL--TVIEGEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANS 266 (323)
Q Consensus 205 ---------~~p~~-~~~~~~--~~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 266 (323)
.+|.+ ..++.. .+.+|+.+.|.|.+.|.|++ .+.|++++..+.......... ..++ ...+
T Consensus 237 ~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~--~~~g~~~~~~ 314 (457)
T 1hzh_H 237 PPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE--QYNSTYRVVS 314 (457)
T ss_dssp CSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEE--CTTSCEEEEE
T ss_pred CCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccccee--cCCCcEEEEE
Confidence 13433 222221 15679999999999988553 899999998875321111111 1111 0112
Q ss_pred eEEEeecCcCCCeEEEEEEeecccC
Q psy15235 267 VLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 267 ~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.|.|.....+|.|.|+|.|.|..+.
T Consensus 315 ~l~i~~~d~~d~G~Y~C~a~n~~~~ 339 (457)
T 1hzh_H 315 VLTVLHQDWLNGKEYKCKVSNKALP 339 (457)
T ss_dssp EECCCHHHHHHTCCEEEEEECTTSS
T ss_pred EEEECHHHccCCCcEEEEEeCCCCC
Confidence 3333333334499999999987644
No 84
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.93 E-value=1e-24 Score=165.09 Aligned_cols=169 Identities=19% Similarity=0.254 Sum_probs=130.4
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+...+....+.+|++++|.|.+.+.++ ...+.|++++..+.. ....|.|.+++.+|+|.|+|.+ .
T Consensus 5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~-~ 71 (176)
T 1f2q_A 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFE--VSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQH-Q 71 (176)
T ss_dssp CCCEEESSCSEEETTCCEEEECCTTCC------CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEEC-T
T ss_pred CEEEcCCCCcceecCCcEEEEEeCCCCCC--cceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEc-C
Confidence 33444555566889999999999988773 247999999988765 4678999999999999999999 6
Q ss_pred CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235 188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS 266 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
+. .....+.|.|..++.+.......+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.... ...
T Consensus 72 ~~----~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~ 134 (176)
T 1f2q_A 72 QV----NESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENH 134 (176)
T ss_dssp TS----SCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSS
T ss_pred Cc----cccccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------------CCC
Confidence 65 235567777776665555556678899999999999 466777999999998774211 257
Q ss_pred eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
.|.|.++..+|+|.|+|.|.|..+. ..+..+.|.|.++|.
T Consensus 135 ~L~i~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 135 NISITNATVEDSGTYYCTGKVWQLD---YESEPLNITVIKAPR 174 (176)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEECSCC
T ss_pred eEEECCCCcccCEEEEEEEEeCCcc---eEecCEEEEEecCCC
Confidence 8999999999999999999997532 355668888887764
No 85
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=165.13 Aligned_cols=175 Identities=15% Similarity=0.238 Sum_probs=133.6
Q ss_pred eeeeCCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCcEE-ec--------eeEEEEeeeecCCC
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLT-QS--------KDSITIRKTTVDDA 178 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~--------~~~l~i~~~~~~d~ 178 (323)
.+...|....+.+|++++|.|.+. +.+ .+.+.|++++..+........++. .. ...|.|.+++.+|+
T Consensus 4 ~~~~~p~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 4 PFVGNPGNITGARGLTGTLRCQLQVQGE---PPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp SEEECCCCEEECTTCCEEEEEEEEEESS---CCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred eeccChhheEEecCCcEEEecccccCCC---CcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 344567777888999999999999 777 689999999998876211111222 11 57899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeee
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLS 256 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~ 256 (323)
|.|+|.+ .+..+. .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......
T Consensus 81 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~---- 154 (195)
T 2c5d_C 81 GQYQCLV-FLGHQT-FVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---- 154 (195)
T ss_dssp EEEEEEE-EETTEE-EECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----
T ss_pred cEEEEEE-EeCCCc-eecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----
Confidence 9999999 555322 23445778888888665 3445678889999999999999999 99999999887543221
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce-eEEEEEE
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE-AFVYVRV 304 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~-~~~~l~v 304 (323)
.....|.|.+++ |+|.|+|.|.|..|. .. ..+.|.|
T Consensus 155 ------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~----~~s~~~~l~V 191 (195)
T 2c5d_C 155 ------GPQRSLHVPGLN--KTSSFSCEAHNAKGV----TTSRTATITV 191 (195)
T ss_dssp ------SCCEEEEECCCS--SCEEEEEEEEETTEE----EECCCEEEEE
T ss_pred ------CCCCeEEEcccc--cCceEEEEEEcCCCc----eEEEEEEEEE
Confidence 146889999987 789999999999976 43 6777777
No 86
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=164.26 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=130.8
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
....+...++.+.|.|.+.+.+| .+.+.|+++|..+.. ..++. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 9 ~~v~l~c~~~~~~l~C~~~~~~p--~~~i~W~~~g~~i~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~n~ 81 (212)
T 2r15_A 9 TDLKIQSTAEGIQLYSFVTYYVE--DLKVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL-FDG 81 (212)
T ss_dssp CCCEEEECSSEEEEEEEBSSCCS--SCEEEEEETTEECCC----CSSEEEEEETTEEEEEEESCCGGGCEEEEEEE-ECS
T ss_pred CcEEEEEcCceEEEEEEEeccCC--CceEEEEECCEEccC----CCeEEEEEeCCEEEEEECCCCcccCEEEEEEE-ecC
Confidence 34456678899999999998655 689999999998876 45544 34467999999999999999999 665
Q ss_pred CCCCCCceeeeeEEEe--------------------cc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 190 STNTTPLAQADFDVIM--------------------KP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 190 ~~~~~~~~~~~l~v~~--------------------~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
. ......+.+.+.. .| .+. .+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.
T Consensus 82 ~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~ 159 (212)
T 2r15_A 82 K--TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 159 (212)
T ss_dssp S--CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred C--cceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc
Confidence 2 2223333443321 22 222 2335678899999999999999999999999999886
Q ss_pred ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
... ++.+.... .....|.|.++..+|.|.|+|.|.|..|. ....+.|.|..
T Consensus 160 ~~~-~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~ 210 (212)
T 2r15_A 160 QTD-HCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNKYGS----ETSDFTVSVFI 210 (212)
T ss_dssp CCS-SEEEEEET---TTEEEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred cCC-CEEEEEcC---CCEEEEEEcCcchHHCeEEEEEEEcCCCc----EEEEEEEEEEc
Confidence 543 34433100 12469999999999999999999999966 77777777753
No 87
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.92 E-value=1.8e-24 Score=166.97 Aligned_cols=188 Identities=16% Similarity=0.188 Sum_probs=128.2
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+...|.. .+.+|++++|.|.+.+.+ . .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus 6 P~i~~~p~~-~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 78 (198)
T 1ugn_A 6 PTLWAEPGS-VITQGSPVTLRCQGGQET---Q-EYRLYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYY-G 78 (198)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECCTTC---C-CEEEEESSSCCHHHHT-SCHHHHTTTEEEESSCCGGGCEEEEEEE-E
T ss_pred CeEeccCCC-cccCCCcEEEEEEecCCC---c-EEEEEECCcccccccc-ccccCCcccEEEECCCCHHHCeEEEEEE-E
Confidence 444455553 677999999999998876 3 6999999987743000 1111145678999999999999999999 6
Q ss_pred CCC-CCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 188 PKS-TNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 188 ~~~-~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
+.. +....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+. .+.+.|++++..+.....+.... . .+.
T Consensus 79 n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~--~-~~~ 154 (198)
T 1ugn_A 79 SDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH--A-RGS 154 (198)
T ss_dssp ETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC---------C
T ss_pred CCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc--C-CCc
Confidence 654 322345667777776 466665555678899999999999888 78999999998764322221111 0 111
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG 306 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~ 306 (323)
....|+|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+
T Consensus 155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (198)
T 1ugn_A 155 SRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVLG 198 (198)
T ss_dssp CEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEEC
T ss_pred ceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEecC
Confidence 35889999999999999999999987531 12345677777653
No 88
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.4e-24 Score=166.84 Aligned_cols=172 Identities=22% Similarity=0.347 Sum_probs=134.0
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+.+...|....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.. .....|.|.+++.+|+|.|+|.+
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~- 84 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRATGHP---FVQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFYVCRV- 84 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEETTTT---SSEEEEEETTEECTT---------CCSSEEEETTCCGGGCEEEEEEE-
T ss_pred CCEEEECCCCeEEeCCCcEEEEeeecCCC---CCEEEEEECCEECCC---------CCCCEEEEccCChhhCeEeEEEE-
Confidence 34455567777788999999999998877 689999999998876 34678999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEec---------------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235 187 DPKSTNTTPLAQADFDVIMK---------------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~---------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~ 250 (323)
.+..+. .....+.|.|... |.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+...
T Consensus 85 ~n~~~~-~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~- 162 (218)
T 3k0w_A 85 NNNFTF-EFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE- 162 (218)
T ss_dssp ECTTCC-EECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-
T ss_pred EcCCCC-ceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-
Confidence 665322 2245566777654 3343 334567889999999999999999999999999887532
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
....|.|.++..+|+|.|+|.|.|..|. ..+..+.|.|.+.+.
T Consensus 163 -------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~~~~ 205 (218)
T 3k0w_A 163 -------------TKKLYMVPYVDLEHQGTYWCHVYNDRDS---QDSKKVEIIIDELNN 205 (218)
T ss_dssp -------------CSSEEEESSCCGGGCEEEEEEEECSSCE---EECCCEEEEECC---
T ss_pred -------------CCCEEEEeecChhcCEEEEEEEEcCCCC---ceeeeEEEEEeCCcc
Confidence 2468999999999999999999998754 256677787876443
No 89
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=167.59 Aligned_cols=172 Identities=19% Similarity=0.193 Sum_probs=113.5
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+...|.. .+.+|++++|.|.+.+.+ . .+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus 6 P~i~~~p~~-~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 78 (196)
T 2d3v_A 6 ATLWAEPGS-VISRGNSVTIRCQGTLEA---Q-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYY-Y 78 (196)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECCTTC---C-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEE-E
T ss_pred CEEEeCCCC-cccCCCeEEEEEeCCCCC---c-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEE-e
Confidence 445555553 677999999999998866 4 9999999987653100 0111245678999999999999999999 6
Q ss_pred CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235 188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
+..+....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+.| +.+.|++++..+.......... ..+..
T Consensus 79 n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~---~~~~~ 154 (196)
T 2d3v_A 79 SPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLT---PSGQF 154 (196)
T ss_dssp ETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-SEEEEEEC---CCEEEEECEEC---TTSCE
T ss_pred CCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccc---cCCCc
Confidence 654333345567777776 4666654455788999999999999988 8999999998764221111111 11113
Q ss_pred ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
...|+|.+++.+|+|.|+|.|.|..+
T Consensus 155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 155 QALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred eeEEEeeecCcccCeeEEEEEEccCC
Confidence 58899999999999999999999764
No 90
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.92 E-value=3.7e-24 Score=166.95 Aligned_cols=190 Identities=22% Similarity=0.353 Sum_probs=134.6
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--cCcEEecee-----EEEEeeeecCCC
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL--SGRLTQSKD-----SITIRKTTVDDA 178 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~~-----~l~i~~~~~~d~ 178 (323)
..|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+...... ..+...... .+.|.++..+|+
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRP---TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEES---CCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCC---CCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence 355666677777788999999999998877 6799999999887642111 112221222 234456689999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEec-c-eeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMK-P-TAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~-p-~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
|.|+|.+ .+..+. .......+.|... + ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....++..
T Consensus 85 G~Y~C~~-~n~~g~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 162 (212)
T 2v9r_A 85 GVYVCVA-RNYLGE-AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI 162 (212)
T ss_dssp EEEEEEE-EETTEE-EECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE
T ss_pred eEEEEEE-ECCCCc-eeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc
Confidence 9999999 555322 1233455666553 2 2224446678899999999999 88999999999999998765555544
Q ss_pred ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce-eEEEEEEcceecCcC
Q psy15235 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE-AFVYVRVKGKSFGYD 312 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~-~~~~l~v~~~~~~~~ 312 (323)
. ...|.|.++..+|+|.|+|.|.|..|. .. ..+.|.|.++|....
T Consensus 163 ~--------~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~s~~~~l~V~~~P~~~~ 208 (212)
T 2v9r_A 163 R--------GGKLMITYTRKSDAGKYVCVGTNMVGE----RESEVAELTVLERPSFVK 208 (212)
T ss_dssp E--------TTEEEESSCCGGGCEEEEEEEEETTEE----EECCCEEEEEEC------
T ss_pred c--------CCeEEEeeCCHhhCeeEEEEEecccCc----eecceEEEEEEeCchHhh
Confidence 4 568999999999999999999999965 33 348888888876553
No 91
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.92 E-value=3.3e-26 Score=198.12 Aligned_cols=260 Identities=13% Similarity=0.138 Sum_probs=157.0
Q ss_pred EEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee--ec------------cCcceEEEeeeeCCeEEEEE
Q psy15235 25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ--SS------------VDSGFAATANLTEDNFKYSI 84 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~--~~------------~~~~~~~~~~~~~~~~~l~i 84 (323)
+..+.++.+.+|++++|.|.+.+ .+.+.|+|++ ..+.. .. ...+..+..+...+...|.|
T Consensus 3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (434)
T 1igy_B 3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL 82 (434)
T ss_dssp EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence 45667788999999999999653 4689999963 32211 00 01111111111234456777
Q ss_pred eecc--cCcceEEEeeccCCccceeeeeee------CCcee------EEecCCcEEEEEEeecCCCCCCc-eEEEEECCe
Q psy15235 85 HEAI--LESGYVQSSLFIPRMNAITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNK 149 (323)
Q Consensus 85 ~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~ 149 (323)
.+++ |+|.|+|.+.+..........+.+ .|.+. .+.+|+.++|.|.+.+..| .+ .|.|++++.
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P--~p~~v~W~k~~~ 160 (434)
T 1igy_B 83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPVTVTWNSGSL 160 (434)
T ss_dssp CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBS--SCCEEEETTTTB
T ss_pred CCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecC--CCeEEEEeeCCc
Confidence 6665 599999999874322110111111 12221 1357999999999998743 44 999999987
Q ss_pred ecccc----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE----------ec--ceee-ee
Q psy15235 150 SITEA----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI----------MK--PTAK-LV 212 (323)
Q Consensus 150 ~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----------~~--p~~~-~~ 212 (323)
.+... ....+.+ .....|.|.++..+| |.|+|.+ .|..+... ....+.+. .. |.+. .+
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~Y~C~a-~n~~~~~~--~~~~~~~~~~~~~v~~~~~~~~p~v~~~~ 235 (434)
T 1igy_B 161 SSGVHTFPAVLQSDLY-TLSSSVTVPSSPRPS-ETVTCNV-AHPASSTK--VDKKIVPRDCGCKPCICTVPEVSSVFIFP 235 (434)
T ss_dssp CSSEEECCCEECSSCE-EEEEEEEEETTTTTS-SCCEEEE-ECTTTTCC--EEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred CCCeEecCceecCCcE-EEEEEEEEcchhcCC-CcEEEEE-EeCCCCcc--ceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence 54210 0001222 223568898888888 9999999 77744322 22222221 00 3332 22
Q ss_pred ceeE--EeeCCeEEEEEEEecCC----CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235 213 ETLT--VIEGEKLRLECLVVGSP----PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286 (323)
Q Consensus 213 ~~~~--~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 286 (323)
+... +.+|+.+.|.|.+.|.| .+.+.|++++..+...................++|.|.++..+|.|.|+|.|.
T Consensus 236 p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 315 (434)
T 1igy_B 236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN 315 (434)
T ss_dssp CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred CChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence 2222 77899999999999884 34899999997764321111111001111235689999999999999999999
Q ss_pred ecccC
Q psy15235 287 NVATR 291 (323)
Q Consensus 287 n~~g~ 291 (323)
|..|.
T Consensus 316 n~~~~ 320 (434)
T 1igy_B 316 SAAFP 320 (434)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 99875
No 92
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.92 E-value=1e-23 Score=166.58 Aligned_cols=187 Identities=17% Similarity=0.317 Sum_probs=136.8
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
....+.+|++++|.|.+.+.+ .+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+ .+..+
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~~-- 100 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYG-- 100 (231)
T ss_dssp SCEEEETTSCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEE-EETTE--
T ss_pred eeEEEccCCCEEEEEecccCC---CCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEE-ecccC--
Confidence 566788999999999999887 679999999998865222211 22245668999999999999999999 66632
Q ss_pred CCceeeeeEEEec----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCeeeeec--CCCC
Q psy15235 194 TPLAQADFDVIMK----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGRIKLSE--HPEK 261 (323)
Q Consensus 194 ~~~~~~~l~v~~~----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~--~~~~ 261 (323)
.......+.|... |.+. .+....+..|+.+.|.|.+.++|.+.+.|++ ++..+........... ....
T Consensus 101 ~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 180 (231)
T 3ojm_B 101 SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN 180 (231)
T ss_dssp EEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTT
T ss_pred cccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccc
Confidence 3455666666652 2222 2446678899999999999999999999999 7776654332221110 0111
Q ss_pred CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 262 GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
......|.|.++..+|+|.|+|.|.|..|. ....+.|.|.++|.+.
T Consensus 181 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~p 226 (231)
T 3ojm_B 181 SSNAEVLALFNVTEADAGEYICKVSNYIGQ----ANQSAWLTVLPKQQAP 226 (231)
T ss_dssp CSCTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEECCC---
T ss_pred cCCccEEEEecCCHHHCeEEEEEEEeccce----EeeEEEEEEecCCCCC
Confidence 224577999999999999999999999966 7888899998887654
No 93
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.92 E-value=3.3e-24 Score=167.91 Aligned_cols=173 Identities=23% Similarity=0.374 Sum_probs=125.8
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeE----EEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS----ITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+.+|++++|.|.+.+.+ .+.|.|+++|..+........++...... +.|.+++.+|+|.|+
T Consensus 9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 85 (217)
T 2vr9_A 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKP---EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85 (217)
T ss_dssp CCEEEECCCCEEECTTSCEEECCEEECSS---CCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred CCEEecCCCceEEeCCCcEEEEEEcCCCC---CCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence 44555566667788999999999999877 68999999999886632223333321222 267888999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEe-cc-eeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeecc-------CCe
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIM-KP-TAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRS-------QGR 252 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~-~p-~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~-------~~~ 252 (323)
|.+ .+..+.. ......+.|.. +| ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+
T Consensus 86 C~~-~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~ 163 (217)
T 2vr9_A 86 CVA-KNRVGQA-VSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163 (217)
T ss_dssp EEE-EETTEEE-ECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS
T ss_pred EEE-ecCCCcc-ccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc
Confidence 999 5553221 12344555544 23 3334446678899999999999 89999999999999887632 223
Q ss_pred eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 164 ~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 195 (217)
T 2vr9_A 164 VRIV-------DGGNLLISNVEPIDEGNYKCIAQNLVGT 195 (217)
T ss_dssp EEEE-------TTTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred EEec-------CCCcEEEeeCCHHHCeEEEEEEEcccce
Confidence 3333 3568999999999999999999999976
No 94
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=164.34 Aligned_cols=184 Identities=17% Similarity=0.149 Sum_probs=130.5
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE--E-eceeEEEEeeeecCCCeeEEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL--T-QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~-~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
|.+...|.. .+.+|++++|.|.+.+ + .+.+.|+|++..+.. .... . .....|.|.+++.+|+|.|+|.
T Consensus 6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 3p2t_A 6 PTLWAEPGS-VISWGNSVTIWCQGTL-E---AREYRLDKEESPAPW----DRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76 (196)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECCT-T---CCEEEEEETTSCSCS----EEECCCSSSSEEEEEESSCCGGGCEEEEEE
T ss_pred CEEEccCCC-cCCCCCcEEEEeeCCC-C---CCEEEEEECCCCCcc----cccccccCCceEEEEeccCCcccCceEEEE
Confidence 444445555 6788999999999988 4 479999999987654 1111 1 4567899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCC
Q psy15235 185 LIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
+ .|..+....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+. ++.+.|++++..+.......... .
T Consensus 77 a-~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~----~ 150 (196)
T 3p2t_A 77 Y-RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG----A 150 (196)
T ss_dssp E-EETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE----E
T ss_pred E-eCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc----c
Confidence 9 6664423445566777753 456665555578899999999999874 56899999998664322111110 0
Q ss_pred CCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235 262 GTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG 306 (323)
Q Consensus 262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~ 306 (323)
......|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+
T Consensus 151 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~G 196 (196)
T 3p2t_A 151 QQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG 196 (196)
T ss_dssp EEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC-
T ss_pred cCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeCC
Confidence 0136789999999999999999999998621 12345566776653
No 95
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.92 E-value=1.3e-23 Score=158.08 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=127.2
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
+.+.+.|....+.+|+++.|.|.+.+.++ .+.+.|++++..+.. ....+.+.+++.+|+|.|+|.+ .
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~--~~~~~W~~~g~~~~~----------~~~~~~~~~~~~~d~G~Y~C~~-~ 71 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPE--SDSIQWFHNGNLIPT----------HTQPSYRFKANNNDSGEYTCQT-G 71 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSS--SSCEEEEETTEECTT----------CCSSEEEEECCGGGCEEEEEEE-T
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCC--cceEEEEECCeEccc----------CccceEEEecccccCeEEEEEE-e
Confidence 34444555556778999999999988753 469999999998875 2345677889999999999999 6
Q ss_pred CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235 188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS 266 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
+. .....+.|.|..++.+.......+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... ...
T Consensus 72 ~~----~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~ 134 (170)
T 3ry4_A 72 QT----SLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------------LDP 134 (170)
T ss_dssp TS----BCCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------SCC
T ss_pred CC----CceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------CCC
Confidence 54 345567788887776665556778899999999999 556678999999998764221 257
Q ss_pred eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.|.|.+++.+|+|.|+|.|.|..|. ..+..+.|.|
T Consensus 135 ~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V 169 (170)
T 3ry4_A 135 TFSIPQANHSHSGDYHCTGNIGYTL---FSSKPVTITV 169 (170)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEE
T ss_pred eEEEEeccccCCEEEEEEEEeCcCc---cccccEEEEE
Confidence 7999999999999999999999864 1445556555
No 96
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.92 E-value=3.4e-24 Score=167.61 Aligned_cols=185 Identities=14% Similarity=0.138 Sum_probs=128.9
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ecee--EEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKD--SITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~G~y~ 182 (323)
.|.+...|. ..+.+|++++|.|.+.+ + .+.|.|+|+|..+... ..... .... .|.|.+++.+|+|.|+
T Consensus 9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~---~~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 80 (218)
T 1uct_A 9 MPFISAKSS-PVIPLDGSVKIQCQAIR-E---AYLTQLMIIKNSTYRE---IGRRLKFWNETDPEFVIDHMDANKAGRYQ 80 (218)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCCT-T---CSEEEEEEEETTEEEE---CSEECC----CCCEEEECSCCGGGCEEEE
T ss_pred CCEEEecCC-CccCCCCCEEEEEEcCC-C---CCEEEEEECCCccccc---ccccCCCCcceeeEEEEcccccccCEEEE
Confidence 344555555 46788999999999876 4 5799999998766431 11111 2344 8999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP 259 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 259 (323)
|.+ .+..+....+..+.|.|.. +|.+...+...+.+|++++|.|.+.+.|.+.+.|+++|..+.. ......
T Consensus 81 C~a-~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~--~~~~~~--- 154 (218)
T 1uct_A 81 CQY-RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP--QHQSGE--- 154 (218)
T ss_dssp EEE-EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC--SEEECS---
T ss_pred EEE-EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc--cccCCC---
Confidence 999 6653322334556677764 5666554466788999999999777777889999999986642 111111
Q ss_pred CCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcceec
Q psy15235 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~~ 309 (323)
....|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+.++
T Consensus 155 ----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~ 201 (218)
T 1uct_A 155 ----HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH 201 (218)
T ss_dssp ----SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred ----ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence 36889999999999999999999864211 13356778888888754
No 97
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.92 E-value=3.8e-23 Score=180.91 Aligned_cols=259 Identities=12% Similarity=0.122 Sum_probs=154.3
Q ss_pred EEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEEE
Q psy15235 25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYSI 84 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i 84 (323)
+..+.++.+.+|++|+|.|.+.+ ...+.|+|+ |+.+... ....+..+..+...+...|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL 84 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence 44567788999999999999543 468999995 3222110 011122222222245567888
Q ss_pred eecc--cCcceEEEeeccCCc--------cceeeeeee----CCceeE-----EecCCcEEEEEEeecCCCCCC-c-eEE
Q psy15235 85 HEAI--LESGYVQSSLFIPRM--------NAITGNYDI----EPKYKV-----FEYRVPFTLKCNVTSPPPGDD-Y-QIV 143 (323)
Q Consensus 85 ~~~~--~~G~Y~C~~~~~~~~--------~~~~~~~~~----~~~~~~-----~~~g~~v~l~C~~~~~~~~~~-~-~i~ 143 (323)
.+++ |+|.|+|.+.+..+. ......+.. .|.+.. ..+|+.++|.|.+.+.+| . + .|.
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P--~~p~~v~ 162 (475)
T 1iga_A 85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFP--QEPLSVT 162 (475)
T ss_pred CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecC--CCceEEE
Confidence 7776 499999999876431 111111110 122221 247999999999999754 4 4 999
Q ss_pred EEECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE-------------
Q psy15235 144 WYKGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI------------- 204 (323)
Q Consensus 144 W~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~------------- 204 (323)
|++++....... ..++.+ .....|.|.....+|+|.|+|.+ .+..+. .....+.+.|.
T Consensus 163 W~~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~~~-~~~~~v~l~V~~~~~~~~~~~~~~ 239 (475)
T 1iga_A 163 WSESGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHV-KHYTNP-SQDVTVPCPVPSTPPTPSPSTPPT 239 (475)
T ss_pred EcCCCcccceEeCCceecCCCCcE-EEEEEEEechhHcCCCceEEEEE-EECCCC-ceeeeEecccccCccccccccccc
Confidence 999875332100 011122 22346888888888999999999 666431 12223332221
Q ss_pred -----ecceee-eec-eeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeec
Q psy15235 205 -----MKPTAK-LVE-TLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEA 273 (323)
Q Consensus 205 -----~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v 273 (323)
.+|.+. .++ ...+.+|+.+.|.|.+.|.++ +.+.| ++..+........... ..+ ....++|.|.++
T Consensus 240 ~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~-~~g~~~~~~~L~I~~~ 316 (475)
T 1iga_A 240 PSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERD-LCGCYSVSSVLPGCAE 316 (475)
T ss_pred CCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceEC-CCCCEEEEEEEEEchH
Confidence 133332 222 222578999999999988754 58999 4444322111100000 001 113568999999
Q ss_pred CcCCCeEEEEEEeecccC
Q psy15235 274 TMADRGNYYCHGNNVATR 291 (323)
Q Consensus 274 ~~~d~G~y~C~a~n~~g~ 291 (323)
..+|.|.|+|.|.|..|.
T Consensus 317 ~~~d~G~Y~C~a~n~~~~ 334 (475)
T 1iga_A 317 PWNHGKTFTCTAAYPESK 334 (475)
T ss_pred HhccCCcEEEEEEcCCCC
Confidence 999999999999999865
No 98
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.92 E-value=2.1e-25 Score=193.08 Aligned_cols=254 Identities=12% Similarity=0.187 Sum_probs=155.0
Q ss_pred EEecCCcEEEEEEec---cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCccce
Q psy15235 32 EIMEGAPINISCILT---IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMNAI 106 (323)
Q Consensus 32 ~v~~G~~v~L~C~~~---~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~~ 106 (323)
.+.+|+.++|.|.+. |.+ .++|++++..+....... ............|.|..+.. .|.|+|.+.+..+....
T Consensus 130 ~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~ 207 (434)
T 1igy_B 130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA--VLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKV 207 (434)
T ss_dssp CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCC--EECSSCEEEEEEEEEETTTTTSSCCEEEEECTTTTCCE
T ss_pred ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCc--eecCCcEEEEEEEEEcchhcCCCcEEEEEEeCCCCccc
Confidence 457999999999953 444 899999987643210000 00000001112456665552 39999999987765322
Q ss_pred ee--------------------eeee-CCceeE-EecCCcEEEEEEeecCCCC-CCceEEEEECCeeccccccc------
Q psy15235 107 TG--------------------NYDI-EPKYKV-FEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSITEATEL------ 157 (323)
Q Consensus 107 ~~--------------------~~~~-~~~~~~-~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~~~~~~------ 157 (323)
.. .+.+ .+.... +..|+.++|.|.+.+.+|. ..+.|.|++++..+......
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~ 287 (434)
T 1igy_B 208 DKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQF 287 (434)
T ss_dssp EEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCC
T ss_pred eeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCC
Confidence 11 1111 221111 5679999999999987531 03589999999776431110
Q ss_pred cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-C
Q psy15235 158 SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P 233 (323)
Q Consensus 158 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p 233 (323)
++.+ .....|.|.++..+|+|.|+|.| .|..+.......+.+ .+..+|.+.... ......|+.+.|.|.+.|. |
T Consensus 288 ~~~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P 365 (434)
T 1igy_B 288 NSTF-RVVSALPIMHQDWLNGKEFKCRV-NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFP 365 (434)
T ss_dssp SSSC-CCCCCEECCHHHHHHTCCCBCCB-CCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBC
T ss_pred CCcE-EEEEEEEECHHHccCCCcEEEEE-ECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeEC
Confidence 1111 22457899999999999999999 777544323333333 344566665322 2223457789999999885 4
Q ss_pred CC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 234 PP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 234 ~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
++ .+.|+++|..+... .........++. ...+.|.|.....+|.|.|+|.|.|...
T Consensus 366 ~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 423 (434)
T 1igy_B 366 EDITVEWQSDGQAPENY-KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 423 (434)
T ss_dssp SCEEEEEEETTSCCSCC-EECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred CCeEEEEEECCEecCCc-eeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence 33 89999999877421 111111001111 1346788888888899999999999873
No 99
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.92 E-value=5e-24 Score=185.62 Aligned_cols=246 Identities=15% Similarity=0.244 Sum_probs=142.8
Q ss_pred eEEecCCcEEEEEEec---cC-ceEEEEEcCccceeeccCcceEEEeeeeCC----eEEEEEeeccc-CcceEEEeeccC
Q psy15235 31 TEIMEGAPINISCILT---IF-EQVKWQLNGRNINQSSVDSGFAATANLTED----NFKYSIHEAIL-ESGYVQSSLFIP 101 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~~---~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~-~G~Y~C~~~~~~ 101 (323)
..+.+|+.++|.|.+. |. +.++|++++..+..... ... ...++ ...|.|.++.. .|.|+|.+.+..
T Consensus 142 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~---~~~--~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~ 216 (457)
T 1hzh_H 142 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF---PAV--LQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKP 216 (457)
T ss_dssp SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEE---EEE--ECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGG
T ss_pred ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEc---Cce--ECCCCCEEEEEEEEecccccCCceEEEEEEeCC
Confidence 3467999999999954 32 68999999876532100 000 01111 12456665542 499999999866
Q ss_pred Cccceeeeee-------------------------e-CCceeE-EecCCcEEEEEEeecCCCCCC---ceEEEEECCeec
Q psy15235 102 RMNAITGNYD-------------------------I-EPKYKV-FEYRVPFTLKCNVTSPPPGDD---YQIVWYKGNKSI 151 (323)
Q Consensus 102 ~~~~~~~~~~-------------------------~-~~~~~~-~~~g~~v~l~C~~~~~~~~~~---~~i~W~~~~~~~ 151 (323)
+.......+. + .+.... +..|+.++|.|.+.+.+| . ..|.|++++..+
T Consensus 217 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p--~p~~~~i~W~k~~~~~ 294 (457)
T 1hzh_H 217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH--EDPEVKFNWYVDGVEV 294 (457)
T ss_dssp GTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCT--TCCCCEEEEEETTEEE
T ss_pred CCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccC--CCCceEEEEEeCCccc
Confidence 5432211111 1 111111 346999999999998764 3 399999999877
Q ss_pred cccccccCcEEeceeEEEEee---eecCC---CeeEEEEEEcCCCCCCCCceeeeeE----EEecceeeeec--eeEEee
Q psy15235 152 TEATELSGRLTQSKDSITIRK---TTVDD---AGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAKLVE--TLTVIE 219 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~~~~~~~~~~~~l~----v~~~p~~~~~~--~~~~~~ 219 (323)
..... ..........+.+.. +...| +|.|+|.| .|..... .....+. +..+|.+.+.. ...+..
T Consensus 295 ~~~~~-~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a-~n~~~~~--~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~ 370 (457)
T 1hzh_H 295 HNAKT-KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV-SNKALPA--PIEKTISKAKGQPREPQVYTLPPSRDELTK 370 (457)
T ss_dssp CCCEE-EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEE-ECTTSSS--CEEEEECCCCCCCBCCEEEEECCCGGGGGS
T ss_pred ccccc-ccceecCCCcEEEEEEEEECHHHccCCCcEEEEE-eCCCCCC--cceEEEEcccCCCCCCeEEEECCCccccCC
Confidence 53100 001112222333332 22444 99999999 6653222 2222332 34466555322 122334
Q ss_pred CCeEEEEEEEecCCCC--cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 220 GEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 220 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|+ +.|.|.+.|.|++ .+.|+++|..+.... ........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus 371 ~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~ 441 (457)
T 1hzh_H 371 NQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 441 (457)
T ss_dssp SE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE-ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred Cc-EEEEEEEEeEECCCCEEEEEECCEECccee-ecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECC
Confidence 55 9999999886443 899999998875321 11111001111 123567777777789999999999987
No 100
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=167.00 Aligned_cols=191 Identities=18% Similarity=0.351 Sum_probs=133.3
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
+....+.+|+++.|.|.+.+.+ .+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+ .+..
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~~-- 95 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNP---TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF-- 95 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSS---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEE-EETT--
T ss_pred CcceEEcCCCeEEEEEEecCCC---CceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEE-eecC--
Confidence 4456688999999999999887 679999999998865222211 22255678999999999999999999 6653
Q ss_pred CCCceeeeeEEEec----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCeeeeec---CC
Q psy15235 193 TTPLAQADFDVIMK----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGRIKLSE---HP 259 (323)
Q Consensus 193 ~~~~~~~~l~v~~~----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~---~~ 259 (323)
........+.|... |.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+........... ..
T Consensus 96 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 175 (241)
T 3grw_A 96 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175 (241)
T ss_dssp EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence 23445566666552 2222 2345667889999999999999999999999 7776654333221110 01
Q ss_pred CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChh
Q psy15235 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRV 314 (323)
Q Consensus 260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~ 314 (323)
........|.|.++..+|+|.|+|.|.|..|. ....+.|.|.++|.+....
T Consensus 176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~p~~~~~~ 226 (241)
T 3grw_A 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGV----AEKAFWLSVHGPRAAEEEL 226 (241)
T ss_dssp SBSEEEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEC----------
T ss_pred eecCCceEEEECcCCcccCcEEEEEEecCcce----EEEEEEEEecCCCCCCccc
Confidence 11123678999999999999999999999965 7889999998887765433
No 101
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=1.4e-23 Score=160.52 Aligned_cols=181 Identities=19% Similarity=0.149 Sum_probs=127.4
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+...|.. .+.+|++++|.|.+.+. ...+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus 5 P~i~~~p~~-~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~ 77 (188)
T 1oll_A 5 PFIWAEPHF-MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIY-R 77 (188)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEE-E
T ss_pred CEEEeecCC-cCCCCCCEEEEEecCCC----CCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEe-c
Confidence 444554554 67899999999998753 368999999987653000 0111145678999999999999999999 5
Q ss_pred CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235 188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
+..+....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+ +++.+.|++++..+.. ...... .
T Consensus 78 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~--~~~~~~-------~ 147 (188)
T 1oll_A 78 VGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--QRGYGK-------V 147 (188)
T ss_dssp ETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--EEEECS-------S
T ss_pred CCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEECCccccc--cccCCC-------c
Confidence 543333345566777763 56666555667899999999999875 4568999999876542 111111 3
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
...|.|.+++.+|+|.|+|.|.|.... ....+..+.|.|.+
T Consensus 148 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~s~~S~~~~l~V~g 188 (188)
T 1oll_A 148 QAEFPLGPVTTAHRGTYRCFGSYNNHA-WSFPSEPVKLLVTG 188 (188)
T ss_dssp EEEEEEEECCGGGCEEEEEECEEETTE-ECCCCCCEEEEEEC
T ss_pred eeEEEECCCCcCCCcEEEEEEEcCCCc-CCCCCCcEEEEecC
Confidence 688999999999999999999997521 12345566776653
No 102
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.91 E-value=5.4e-23 Score=169.50 Aligned_cols=187 Identities=20% Similarity=0.300 Sum_probs=144.4
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y 181 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+... ..++. .....|.|.+++.+|+|.|
T Consensus 4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 77 (305)
T 2nzi_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASVTDDDATVY 77 (305)
T ss_dssp CCEEEECCCCEEECTTCCEEEEEEEECSS---CCEEEEEETTEECCCC---SSSEEEEEETTTEEEEEESSCCGGGCSEE
T ss_pred CCeeeecccceEEeCCCcEEEEEEEeCCC---CCeEEEEECCEEcccC---CCeEEEEECCCCEEEEEEccCChhhCeEE
Confidence 35555567777788999999999999887 7899999999887641 12332 2345899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceeeee------ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
+|.+ .|..+ .....+.|.|..+|.+..+ ....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+
T Consensus 78 ~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~ 153 (305)
T 2nzi_A 78 QVRA-TNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQV 153 (305)
T ss_dssp EEEE-EETTE--EEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS-SSCEE
T ss_pred EEEE-EcCCC--CccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC-CcEEE
Confidence 9999 66633 3466777888777765432 3456788999999999999999999999999877543 33333
Q ss_pred ecCCCCCCcceeEEEee-cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 256 SEHPEKGTANSVLQIDE-ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~-v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
... .....|.|.+ +..+|.|.|+|.|.|..|. ....+.|.|.+.|.+.
T Consensus 154 ~~~----~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~p 202 (305)
T 2nzi_A 154 IVT----RSFTSLVFPNGVERKDAGFYVVCAKNRFGI----DQKTVELDVADVPDPP 202 (305)
T ss_dssp EEC----SSEEEEEETTCCCSTTCEEEEEEEEETTEE----EEEEEEEEEEBCCCCC
T ss_pred EEc----CCceEEEEecCCccCccEEEEEEEEeCCCc----eeeEEEEEEecCCCCC
Confidence 210 1357899999 9999999999999999966 7788888888776543
No 103
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=9.1e-23 Score=155.48 Aligned_cols=167 Identities=25% Similarity=0.440 Sum_probs=124.6
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 197 (323)
.+.+|++++|.|.+.+.++. ...+.|++++..+.. .... .....|.|. ..+|+|.|+|.+ .+. ...
T Consensus 9 ~v~~G~~v~l~C~~~~~~~p-~~~~~W~k~~~~l~~----~~~~-~~~~~l~i~--~~~d~G~Y~C~~-~n~-----~~~ 74 (184)
T 3b5h_A 9 VEDLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKE----DALP-GQKTEFKVD--SDDQWGEYSCVF-LPE-----PMG 74 (184)
T ss_dssp EEEETTEEEEEEEEESCSSC-CCEEEEESSSEEEEC----TTCC-CSEEEEEEC--GGGCCEEEEEEE-EST-----TSC
T ss_pred EEecCCCEEEEEECCCCCCC-ceEEEEEeCCEEeec----cccc-CCcEEEEEe--chhhCeEEEEEE-ECC-----cCc
Confidence 46789999999999887621 239999999988865 2221 223455555 588999999999 653 346
Q ss_pred eeeeEEEecceeeee-ceeEEeeCCeEEEEEEEecCC-CCcEEEEE---CCeeee-c-cCCeeeeecCCCCCCcceeEEE
Q psy15235 198 QADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSP-PPTVEWRI---GNDTYF-R-SQGRIKLSEHPEKGTANSVLQI 270 (323)
Q Consensus 198 ~~~l~v~~~p~~~~~-~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~L~i 270 (323)
...|.|..+|.+... ....+.+|+.+.|.|.+.|+| .+.+.|++ ++..+. . ...++.+.. . ...+.|.|
T Consensus 75 ~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~L~i 150 (184)
T 3b5h_A 75 TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S--QGRSELHI 150 (184)
T ss_dssp EEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E--TTEEEEEE
T ss_pred EEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--c--CCeeEEEE
Confidence 778888888877633 355688999999999999999 78999999 554433 2 224554441 1 13468999
Q ss_pred eecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 271 DEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 271 ~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.+++ .+|.|.|+|.|.|..|. ....+.|.|.+
T Consensus 151 ~~v~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~ 183 (184)
T 3b5h_A 151 ENLNMEADPGQYRCNGTSSKGS----DQAIITLRVRS 183 (184)
T ss_dssp CSCCTTTSSEEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred eeccccccCceEEEEEEeCCCc----ceEEEEEEEec
Confidence 9999 99999999999999966 77778888865
No 104
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.91 E-value=1.3e-24 Score=169.16 Aligned_cols=189 Identities=17% Similarity=0.257 Sum_probs=135.0
Q ss_pred eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEEeceeEEEEeeeecCCCeeEE
Q psy15235 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 182 (323)
...+....+.+|+++.|.|.+.+.+ .+.+.|++++..+.. ......++......|.|.+++.+|+|.|+
T Consensus 8 ~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~ 84 (209)
T 1nbq_A 8 HSSEPEVRIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT 84 (209)
T ss_dssp ECSCSBCCEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred EcCCCceEEEcCCCEEEEEEEeCCC---CcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEE
Confidence 3355556678899999999999877 789999998765311 01223444433478999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecC--
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEH-- 258 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~-- 258 (323)
|.+ .+..+.......+.|.|..+|.+. ......+.+|+.+.|.|.+ .++|.+.+.|++++..+............
T Consensus 85 C~~-~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 163 (209)
T 1nbq_A 85 CMV-SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 163 (209)
T ss_dssp EEE-EETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCC
T ss_pred EEE-ecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccc
Confidence 999 665444445667788888777554 3334568899999999997 88999999999999887643221100000
Q ss_pred CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 259 ~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.........|.|.++..+|.|.|+|.|.|..|. ...+..+.|.|.
T Consensus 164 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~s~~v~l~V~ 208 (209)
T 1nbq_A 164 YVLNPTTGELVFDPLSASDTGEYSCEARNGYGT--PMTSNAVRMEAV 208 (209)
T ss_dssp CCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC--CEECCCBCCEEE
T ss_pred eEEcCCcceEEEEeccccCCeEEEEEEeCCcCc--ccccccEEEEEe
Confidence 000114678999999999999999999999977 223555555554
No 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.91 E-value=2.8e-24 Score=180.42 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=147.9
Q ss_pred CcceEEEeeccCCcc----ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235 90 ESGYVQSSLFIPRMN----AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK 165 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.|.|+|...+..... ...|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.... ........
T Consensus 137 ~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~i~W~~~~~~~~~~~--~~~~~~~~ 211 (347)
T 2ifg_A 137 EQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRG---LEQAGWILTELEQSATV--MKSGGLPS 211 (347)
T ss_dssp GGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSS---CCCCCEEESCCCSSEEE--CCCCCSSE
T ss_pred ccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCC---CCEEEEEcCCceeeccc--ccceeccc
Confidence 588999876522111 1234444445555678899999999999988 78999999987654311 11111456
Q ss_pred eEEEEeeeecCCCe-eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235 166 DSITIRKTTVDDAG-QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244 (323)
Q Consensus 166 ~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~ 244 (323)
..|.|.+++.+|+| .|+|.+ .+..+ .....+.+.|..+|.+ ....+.+|+.+.|.|.+.|.|.|.+.|+++|.
T Consensus 212 ~~L~i~~v~~~D~G~~Y~C~a-~n~~g--~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~ 285 (347)
T 2ifg_A 212 LGLTLANVTSDLNRKNVTCWA-ENDVG--RAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS 285 (347)
T ss_dssp EEEEEESCCSTTTTCCEEECC-EETTE--ECCEEECCCCBEEEEE---EECCCEESSSEEEEEEEEEESCCEEEEEETTE
T ss_pred ceEEEeeCChHHCCCeEEEEE-EcCCC--CEEEEEEEEEcCCCee---eeccCccCceEEEEEEeeecCCCcEEEEeCCE
Confidence 78999999999999 999999 66633 3466777777777775 12235679999999999999999999999999
Q ss_pred eeeccCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 245 TYFRSQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 245 ~~~~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.+............ .......++|+|.+++.+|+|.|+|.|.|..|. ....+.|.|.++|
T Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~~P 347 (347)
T 2ifg_A 286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ----ASASIMAAFMDNP 347 (347)
T ss_dssp ECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEECSCCCC
T ss_pred ECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc----eeeEEEEEecCCC
Confidence 88643222111100 011224678999999999999999999999966 8888888887765
No 106
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=162.16 Aligned_cols=175 Identities=20% Similarity=0.358 Sum_probs=127.2
Q ss_pred CCceeEEecCCcEEEEEE-eecCCCCCC-ceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 113 EPKYKVFEYRVPFTLKCN-VTSPPPGDD-YQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~-~~~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+....+.+|+.+.|.|. +.+.+ . +.+.|++++..+..... ..+.. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p---~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~ 88 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFP---DDLSYRWLLNEFPVFITMD-KRRFVSQTNGNLYIANVEASDKGNYSCFV-SSP 88 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEES---SCCEEEEEESSTTCBCCCS-SSEEECTTTCCEEESSCCGGGCEEEEEEE-EEG
T ss_pred CCceEEEECCCCEEEeccccccCC---CceEEEEEECCceeeeeeC-CCeEEEcCCCeEEECcCCcccCeEEEEEE-Eec
Confidence 445566889999999999 77776 5 89999999877643111 12222 45678999999999999999999 554
Q ss_pred CCCCC-CceeeeeEEE-------ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 190 STNTT-PLAQADFDVI-------MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 190 ~~~~~-~~~~~~l~v~-------~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.+... ......+.+. .+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~----- 162 (201)
T 3s97_C 89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST-AEIST----- 162 (201)
T ss_dssp GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT-CEEET-----
T ss_pred CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc-eeecC-----
Confidence 21111 1122233332 234343 333667889999999999999999999999999876532 22221
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
....|.|.++..+|+|.|+|.|.|..|. ....+.|.|+
T Consensus 163 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~ 200 (201)
T 3s97_C 163 ---SGAVLKIFNIQLEDEGIYECEAENIRGK----DKHQARIYVQ 200 (201)
T ss_dssp ---TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred ---CCCEEEEccCChhhCEEEEEEEEecCCc----eeeeEEEEEe
Confidence 3578999999999999999999999966 7788888775
No 107
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.91 E-value=2.4e-23 Score=161.17 Aligned_cols=180 Identities=17% Similarity=0.154 Sum_probs=122.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCC--CCCceEEEEE-CCeeccccccccCcEE-------eceeEEEEeeeecCCCeeEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPP--GDDYQIVWYK-GNKSITEATELSGRLT-------QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~-~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~ 182 (323)
.+....+.+|+++.|.|.+.+.++ ...+.+.|++ ++..... .+++. .....|.|.+++.+|+|.|+
T Consensus 8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~----~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (202)
T 3bp6_B 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ----SERATLLEEQLPLGKALFHIPSVQVRDSGQYR 83 (202)
T ss_dssp SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB----CSSCEECGGGGGGTEEEEEECSCCGGGCEEEE
T ss_pred CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc----CCceEEeeccccCCeeEEEECCCCHHHCcEEE
Confidence 445567889999999999988762 1127999999 4443322 33433 14578999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
|.+ .+..+ .....+.|.|..++.........+.+|+.+.|.|.+.|+|.|.+.|++++..+.. ..... . .+
T Consensus 84 C~~-~~~~~--~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~---~~~~~--~-~~ 154 (202)
T 3bp6_B 84 CLV-ICGAA--WDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT---SHIRT--P-EG 154 (202)
T ss_dssp EEE-EETTE--EEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE---EEEEC--T-TS
T ss_pred EEE-EeCCC--cceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCceEEEEeCCCCccC---ceeeC--C-CC
Confidence 999 66532 2356667777664321111112456799999999999999999999998875431 11111 1 11
Q ss_pred CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
....+.+.++..+|.|.|+|.|.|..|. ....+.|.|.+...+
T Consensus 155 -~~~~~~i~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~v~~~~~p 197 (202)
T 3bp6_B 155 -LYQVTSVLRLKPQPSRNFSCMFWNAHMK----ELTSAIIDPLSRMEP 197 (202)
T ss_dssp -CEEEEEEEEECCCTTCCEEEEEEETTTT----EEEEEEECC------
T ss_pred -CEEEEEEEEEEcCCCCEEEEEEEcCCcc----cccEEEEEecCcCCC
Confidence 2466778899999999999999999966 777888877665443
No 108
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.91 E-value=2.2e-22 Score=171.56 Aligned_cols=182 Identities=20% Similarity=0.354 Sum_probs=139.9
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccccc-cccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEAT-ELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
....+.+|+.++|.|.+.+.| .+.|.|+++ |..+.... ....++. .....|.|.+++.+|+|.|+|.+ .
T Consensus 8 ~~~~~~~G~~v~l~C~~~g~p---~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 83 (389)
T 2jll_A 8 KNETTYENGQVTLVCDAEGEP---IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA-A 83 (389)
T ss_dssp CCEEEETTSEEEEEEEEECSS---CCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEE-E
T ss_pred CceEEeCCCeEEEEEEeeccc---CCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEE-E
Confidence 334566799999999999988 789999999 87775411 1134443 24678999999999999999999 7
Q ss_pred CCCCCCCCceeeeeEEEecceeeeecee-EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcc
Q psy15235 188 PKSTNTTPLAQADFDVIMKPTAKLVETL-TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTAN 265 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (323)
|..+. ....+.|.|..+|.+..+... .+.+|+.+.|.|.+.|+|.+.+.|++++..+.... .++.+.. . ...
T Consensus 84 n~~g~--~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~--~--~~~ 157 (389)
T 2jll_A 84 SRIGG--HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--T--GRK 157 (389)
T ss_dssp CSSCE--EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE--C--SSC
T ss_pred eCCCC--cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec--c--CCE
Confidence 77443 467788888888877644433 67889999999999999999999999998876443 2333331 1 135
Q ss_pred eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
..|.|.++..+|+|.|+|.|.|..|. ....+.|.+...|.+
T Consensus 158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~ 198 (389)
T 2jll_A 158 MILEIAPTSDNDFGRYNCTATNHIGT----RFQEYILALADVPSS 198 (389)
T ss_dssp EEEEECCCSTTSSEEEEEEEEETTEE----EEEEEEEEECCCCCC
T ss_pred EEEEECCCChhhCEEEEEEEEcCCCc----EEEEEEEEecCCCCC
Confidence 78999999999999999999999976 667777777666544
No 109
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.91 E-value=8.1e-23 Score=168.42 Aligned_cols=180 Identities=23% Similarity=0.350 Sum_probs=129.8
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeec-CCCe
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTV-DDAG 179 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~-~d~G 179 (323)
.|.+...+....+.+|++++|.|.+.+.+ .+.|.|+++|..+.. .++. .....|.|.++.. +|+|
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~i~W~k~g~~i~~-----~~~~~~~~~~~~~~~L~i~~~~~~~D~G 77 (304)
T 2yd9_A 6 PPRFIKEPKDQIGVSGGVASFVCQATGDP---KPRVTWNKKGKKVNS-----QRFETIEFDESAGAVLRIQPLRTPRDEN 77 (304)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEC-------C-----TTEEEEEETTTTEEEEEECSCCTTTTCS
T ss_pred CCeeeecCCceEecCCCeEEEEEEEEEeC---CCeEEEEECCEECCC-----CceEEEEecCCCceEEEEecccccCCCe
Confidence 45555667777788999999999999887 689999999988754 2222 2237899999997 9999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~ 251 (323)
.|+|.+ .+..+. ....+.|.|..+ |.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....
T Consensus 78 ~Y~C~a-~n~~g~--~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~ 154 (304)
T 2yd9_A 78 VYECVA-QNSVGE--ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS 154 (304)
T ss_dssp EEEEEE-ECSSCE--ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGG
T ss_pred EEEEEE-ECCCCe--EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCC
Confidence 999999 676433 556777777764 4444 33456688899999999999999999999999988765432
Q ss_pred --eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 252 --RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 252 --~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
++... ....|.|.+++.+|+|.|+|.|.|..|.. .+....+.|.+.
T Consensus 155 ~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~v~~~ 202 (304)
T 2yd9_A 155 NGRIKQL-------RSGALQIESSEETDQGKYECVATNSAGVR-YSSPANLYVRVQ 202 (304)
T ss_dssp TTSEEEC-------TTSCEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEECC
T ss_pred cceEEeC-------CCeEEEEccCCcccCEEEEEEEEeCCCCE-EeccEEEEEEee
Confidence 23222 24689999999999999999999998751 112245555543
No 110
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=158.56 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=123.7
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|.+...|.. .+.+|++++|.|.+.+ + .+.+.|+|++.... .....|.|.+++.+|+|.|+|.+ .
T Consensus 9 P~i~~~p~~-~v~~G~~v~L~C~~~~-~---~~~~~W~k~g~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a-~ 72 (184)
T 2gi7_A 9 PSLQALPSS-LVPLEKPVTLRCQGPP-G---VDLYRLEKLSSSRY----------QDQAVLFIPAMKRSLAGRYRCSY-Q 72 (184)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECST-T---CSEEEEEETTTCCE----------ESSSEEEESSCCGGGCEEEEEEE-E
T ss_pred CeEEeCCCc-cccCCCcEEEEEeCCC-C---CCEEEEEECCcccc----------CcccEEEECcCChhhCceEEEEE-E
Confidence 444445554 6789999999999887 4 57999999986621 35678999999999999999999 6
Q ss_pred CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235 188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
+..+....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+. ++.+.|++++..+.... .. .. .
T Consensus 73 n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~-~~-~~-------~ 142 (184)
T 2gi7_A 73 NGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKN-PE-RW-------Y 142 (184)
T ss_dssp ETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCC-CC-EE-------E
T ss_pred cCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCC-CcEEEEEECCCcCccee-cC-CC-------c
Confidence 654323345556677743 556665445667899999999998765 46999999998764311 11 11 3
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEE
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRV 304 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v 304 (323)
...|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|
T Consensus 143 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 143 RASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp EESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred eEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 6789999999999999999999986531 122344555544
No 111
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.90 E-value=2e-23 Score=162.87 Aligned_cols=181 Identities=19% Similarity=0.320 Sum_probs=129.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCC-CceEEEEEC----------------Ceeccc-cccccCcEEe-------ceeE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG----------------NKSITE-ATELSGRLTQ-------SKDS 167 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~----------------~~~~~~-~~~~~~~~~~-------~~~~ 167 (323)
.+....+.+|++++|.|.+.+.++.. .+.+.|+++ +..+.. ...+.+++.. ....
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 34455688899999999998865321 259999983 322221 1223444441 4678
Q ss_pred EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCee
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDT 245 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~ 245 (323)
|.|.+++.+|+|.|+|.+ .+.. ......+.|.|..+|.+. .+....+..|+.+.|.|.+ .|.|.+.+.|++++..
T Consensus 86 L~i~~v~~~D~G~Y~C~~-~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~ 162 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKV-KKAP--GVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS 162 (214)
T ss_dssp EEECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred EEEccCChhhCeEEEEEE-EeCC--CccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence 999999999999999999 6653 334667778888776544 3334457889999999999 8999999999996432
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
........... ....|.|.++..+|+|.|+|.|.|..|. ....+.|.|.++
T Consensus 163 ~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~P 213 (214)
T 3jz7_A 163 QTMPTPWLAEM-------TSPVISVKNASSEYSGTYSCTVQNRVGS----DQCMLRLDVVPP 213 (214)
T ss_dssp CCCCGGGGGGT-------TSSEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEECCBCC
T ss_pred CccCccceecc-------CCCEEEEecCCHHHCEEEEEEEEcCCCc----EEEEEEEEEeCC
Confidence 22111111111 3569999999999999999999999965 788888888743
No 112
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.90 E-value=1.1e-22 Score=166.38 Aligned_cols=186 Identities=25% Similarity=0.380 Sum_probs=138.9
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.+.+.|....+.+|+.++|.|.+.+.+| .+.+.|++ +|..+... ..++. .....|.|.+++.+|+|.|+
T Consensus 4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~--~~~i~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 4 QVDIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CEEEESSSEEEETTCCEEEEEEESSCCS--CCEEEEECTTSCBCCSS---CSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred ceEecCCCceEeCCCeEEEEEEeCCCCC--CcEeEEECCCCeECccC---CceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence 3455666677889999999999998764 57999999 77766531 23332 24678999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCC
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPE 260 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~ 260 (323)
|.+ .+..+ ......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... ..++...
T Consensus 79 C~~-~n~~g-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---- 152 (291)
T 1qz1_A 79 CVV-TAEDG-TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL---- 152 (291)
T ss_dssp EEE-ECTTS-CEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC----
T ss_pred EEE-EcCCC-CeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc----
Confidence 999 66642 234566777777777665 344667889999999999999999999999999876532 2333333
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
....|.|.++..+|+|.|+|.|.|..+. ......+.|.|..+|..
T Consensus 153 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~~~--~~~~~~~~l~v~~~p~~ 197 (291)
T 1qz1_A 153 ---SNNYLQIRGIKKTDEGTYRCEGRILARG--EINFKDIQVIVNVPPTV 197 (291)
T ss_dssp ---TTSCEEETTCCGGGCEEEEEEEEEGGGT--EEEEEEEEEEEEEEEEE
T ss_pred ---cCCcEEEccCccccCeEEEEEEEecCCC--ceeeEEEEEEEecCCcc
Confidence 3568999999999999999999998743 22345566666655543
No 113
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.90 E-value=7e-23 Score=156.13 Aligned_cols=163 Identities=15% Similarity=0.257 Sum_probs=124.4
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE-------eceeEEEEeeeecCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT-------QSKDSITIRKTTVDDA 178 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~-------~~~~~l~i~~~~~~d~ 178 (323)
...+.+|++++|.|.+.+.+ .+.+.|++++..+.. ......++. .....|.|.+++.+|+
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~ 80 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80 (184)
T ss_dssp EEEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGC
T ss_pred cEEEeCCCCEEEEEEEcCCC---ceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHC
Confidence 45578899999999998776 689999998753211 011123333 1255699999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~ 258 (323)
|.|+|.+ .+.. ..+.|.|.. +..+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 81 G~Y~C~~-~~~~------~~~~l~V~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~---------- 140 (184)
T 2ny1_B 81 DTYICEV-EDQK------EEVQLLVFG---LTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------- 140 (184)
T ss_dssp EEEEEEE-TTEE------EEEEEEEEE---EEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE----------
T ss_pred EEEEEEE-EcCC------CcEEEEEEE---ecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc----------
Confidence 9999999 6651 245566553 2234456788999999999999899999999998765521
Q ss_pred CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 259 ~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|.+.|..
T Consensus 141 -----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~----~~~~~~l~V~~~p~~ 183 (184)
T 2ny1_B 141 -----GGKTLSVSQLELQDSGTWTCTVLQNQKK----VEFKIDIVVLAFQKA 183 (184)
T ss_dssp -----ESSEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEECCCC-
T ss_pred -----CceEEEEecCCcCCCeEEEEEEEECCce----EEEEEEEEEEecCCC
Confidence 3678999999999999999999998855 788889999887753
No 114
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.90 E-value=4.5e-23 Score=160.33 Aligned_cols=178 Identities=22% Similarity=0.313 Sum_probs=127.1
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc---------------cccccCcEE-eceeEEEEeeeecCCC
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE---------------ATELSGRLT-QSKDSITIRKTTVDDA 178 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~---------------~~~~~~~~~-~~~~~l~i~~~~~~d~ 178 (323)
....+.+|++++|.|...+.+ .+.+.|++++..... ...+.+++. ..+..|.|.+++.+|+
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~ 83 (208)
T 3r4d_A 7 VPPQVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM 83 (208)
T ss_dssp ESSEEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGC
T ss_pred ccceeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCC
Confidence 335577899999999977766 679999997542211 111223333 3345799999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
|.|+|.+ .+..+ ......+.|.|..+ |.+...... +.+|+.+.|.|.+.+.| +.+.|++++..+... .++.+
T Consensus 84 G~Y~C~~-~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~-~~~~~ 158 (208)
T 3r4d_A 84 GVYTLDM-TDENY-RRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT-ERMTL 158 (208)
T ss_dssp EEEEEEE-ECSSC-EEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC-SSEEE
T ss_pred eEEEEEE-EcccC-ceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC-CCeEE
Confidence 9999999 56522 33455666777654 455444333 88899999999998865 799999999888643 34444
Q ss_pred ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
.. ...+|.|.++..+|.|.|+|.|.|..|. ..+..++|.|..++.
T Consensus 159 ~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~---~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 159 SQ------NNSILRIDPIKREDAGEYQCEISNPVSV---RRSNSIKLDIIFDPH 203 (208)
T ss_dssp ET------TTTEEEESSCCGGGCEEEEEEEECTTCC---EECCCEEECCC----
T ss_pred cC------CCCEEEEeccCHHhCeEEEEEEecCCCc---ccCCceeeeEEeCCc
Confidence 41 3478999999999999999999999976 355677777776654
No 115
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.90 E-value=2.2e-22 Score=176.10 Aligned_cols=248 Identities=14% Similarity=0.240 Sum_probs=149.3
Q ss_pred EecCCcEEEEEEec---cC-c-eEEEEEcCccceeeccCcceEEEeeeeCC----eEEEEEeecc--cCcceEEEeeccC
Q psy15235 33 IMEGAPINISCILT---IF-E-QVKWQLNGRNINQSSVDSGFAATANLTED----NFKYSIHEAI--LESGYVQSSLFIP 101 (323)
Q Consensus 33 v~~G~~v~L~C~~~---~~-~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~--~~G~Y~C~~~~~~ 101 (323)
+.+|+.++|.|.+. |. + .++|++++......... . .....++ ...|.+..+. |+|.|+|.+.+..
T Consensus 138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~--~--~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~ 213 (475)
T 1iga_A 138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP--P--SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYT 213 (475)
T ss_pred cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCC--c--eecCCCCcEEEEEEEEechhHcCCCceEEEEEEECC
Confidence 36899999999953 33 3 99999987543221000 0 0000111 1235555543 5899999999876
Q ss_pred Ccc---cee------------------------eeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235 102 RMN---AIT------------------------GNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE 153 (323)
Q Consensus 102 ~~~---~~~------------------------~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~ 153 (323)
+.. .+. +.+.+ .+....+..|+.++|.|.+.+.+|...+.|.| + +..+..
T Consensus 214 ~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~ 291 (475)
T 1iga_A 214 NPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKS 291 (475)
T ss_pred CCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCC
Confidence 432 111 11111 12222246899999999999876421269999 4 433322
Q ss_pred cccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE---EEecceeeeece--eEEeeCCe
Q psy15235 154 ATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD---VIMKPTAKLVET--LTVIEGEK 222 (323)
Q Consensus 154 ~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~--~~~~~g~~ 222 (323)
.... ++.+ .....|.|.++..+|+|.|+|.+ .|..+.. .....+. +..+|.+.+... ..+.+|+.
T Consensus 292 ~~~~~~~~~~~g~~-~~~~~L~I~~~~~~d~G~Y~C~a-~n~~~~~--~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~ 367 (475)
T 1iga_A 292 AVQGPPERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTA-AYPESKT--PLTATLSKSGNTFRPEVHLLPPPSEELALNEL 367 (475)
T ss_pred ccccCceECCCCCE-EEEEEEEEchHHhccCCcEEEEE-EcCCCCC--ceEEEeecCCCCCCCeEEEECCChHHhccCCc
Confidence 1000 1111 23457999999999999999999 6764432 2233342 245666653322 23678999
Q ss_pred EEEEEEEecC-CC-CcEEEEECCeeeeccCCee-eeecCC--CCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 223 LRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRI-KLSEHP--EKG--TANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 223 ~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~--~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+.|.|.+.|. |+ +.+.|+++|..+....... ...... .++ ...+.|.|.....+|.|.|+|.|.|...
T Consensus 368 ~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l 442 (475)
T 1iga_A 368 VTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 442 (475)
T ss_pred eEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence 9999999886 43 4899999998875432000 001000 111 1346788888888899999999999873
No 116
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.90 E-value=4.6e-23 Score=164.93 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=127.0
Q ss_pred CCceeEEecCCcEEEEEEeec---CCCCCCceEEEEECCeecc----c----------------------cccccCcEE-
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTS---PPPGDDYQIVWYKGNKSIT----E----------------------ATELSGRLT- 162 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~---~~~~~~~~i~W~~~~~~~~----~----------------------~~~~~~~~~- 162 (323)
.+....+.+|++++|.|.+.+ .+ .+.+.|++++.... . ...+.+|+.
T Consensus 8 ~~~~v~v~~G~~v~L~C~~~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 8 THTEVEVHAGGTVELPCSYQLANDTQ---PPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp SCSEEEECTTSCEEECCEEEECSCCS---CCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred CCCceEEecCCeEEEEEEeEcCCCCC---ceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 455667889999999999987 55 68999999875431 0 012234443
Q ss_pred --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC---ceeeeeEEEec---ceee--eeceeEEeeCCeEEEEEEEecC
Q psy15235 163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP---LAQADFDVIMK---PTAK--LVETLTVIEGEKLRLECLVVGS 232 (323)
Q Consensus 163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~---~~~~~l~v~~~---p~~~--~~~~~~~~~g~~~~l~C~~~g~ 232 (323)
.....|.|.+++.+|+|.|+|.+ .+..+.... ...+.|.|..+ |.+. .+....+.+|+.+.|.|.+.+.
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~ 163 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQV-AQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC 163 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEE-ECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESC
T ss_pred ccCCcceEEEeeCChhhCeEEEEEe-ccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCC
Confidence 12468999999999999999999 665332211 23666777653 3333 2334566779999999999999
Q ss_pred CCCcEEEEECCeeeeccCCe-------------eeeecCCCCCC---cceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 233 PPPTVEWRIGNDTYFRSQGR-------------IKLSEHPEKGT---ANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 233 p~~~~~W~~~~~~~~~~~~~-------------~~~~~~~~~~~---~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
|.|.+.|++++..+...... ........... ....|.|.+++.+|+|.|+|.|.|..|. .++.
T Consensus 164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~g~~ 242 (250)
T 2fbo_J 164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDAD 242 (250)
T ss_dssp TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG-GGEE
T ss_pred CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc-cCcc
Confidence 99999999998776432110 00000000000 2378999999999999999999997765 2446
Q ss_pred eeEEEEEE
Q psy15235 297 EAFVYVRV 304 (323)
Q Consensus 297 ~~~~~l~v 304 (323)
...+.|.|
T Consensus 243 ~~~~~l~V 250 (250)
T 2fbo_J 243 RSSTILKV 250 (250)
T ss_dssp EEEEEEEC
T ss_pred ceeEEEeC
Confidence 66666654
No 117
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.90 E-value=6.2e-23 Score=160.20 Aligned_cols=184 Identities=16% Similarity=0.187 Sum_probs=123.1
Q ss_pred CCceeEEecC--CcEEEEEEeecCCCCCCceEEEEEC---CeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 113 EPKYKVFEYR--VPFTLKCNVTSPPPGDDYQIVWYKG---NKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 113 ~~~~~~~~~g--~~v~l~C~~~~~~~~~~~~i~W~~~---~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+....+.+| ++++|.|.+.+ + .+.+.|+++ +..+.. ..++. .....|.|.+++.+|+|.|+|.+
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p---~~~v~w~~~~~~g~~~~~----~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a- 83 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-S---NLNVSLCARYPEKRFVPD----GNRISWDSKKGFTIPSYMISYAGMVFCEA- 83 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-T---TCCEEEEEETTTEEECCC----SSSCEEETTTEEEEEGGGTTTCSEEEEEE-
T ss_pred CceEEEEecCCCccEEEeeccCC-C---CcEEEEEhhcCCCccccC----CCcccccCCccEEEccCChhcCceEEEEE-
Confidence 3456668889 99999999976 5 578999884 655554 33333 44567999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEe--cceeee-ec-eeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 187 DPKSTNTTPLAQADFDVIM--KPTAKL-VE-TLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~--~p~~~~-~~-~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.+.. ....+..+.|.|.. +|.+.. +. ...+.+|++++|.|.+.|.|. +.+.|++++..+..............
T Consensus 84 ~n~~-~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~ 162 (213)
T 2x1w_L 84 KIND-ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162 (213)
T ss_dssp C-----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCS
T ss_pred EECC-eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecccccccc
Confidence 6642 22233335566643 333332 22 337899999999999998653 47999999876432111000000000
Q ss_pred C---CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 261 K---GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 261 ~---~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
. ....++|+|.+++.+|+|.|+|.|.|..|. ....+.|.|.++|..
T Consensus 163 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~----~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT----KKNSTFVRVHEDPIE 211 (213)
T ss_dssp SCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEC----
T ss_pred CccceeeeEEEEECCCCcccCEEEEEEEecCCCc----EEEEEEEEEeccccc
Confidence 0 113568999999999999999999999965 788999999887753
No 118
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.90 E-value=2.5e-22 Score=155.18 Aligned_cols=182 Identities=10% Similarity=0.095 Sum_probs=123.7
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECC-eeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN-KSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP 195 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 195 (323)
..+.+|+.++|.|.+.|.| .+.|.|+++. ..+.. ..........|.|.+++.+|+|.|.|.+ .|.. ...
T Consensus 11 ~~~~~G~~v~L~C~~~g~P---~p~i~W~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~--~~~ 80 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCE---SPFFSWRTQIDSPLNG----KVTNEGTTSTLTMNPVSFGNEHSYLCTA-TCES--RKL 80 (202)
T ss_dssp EEEETTSCEEEEEEEESCS---SCEEEEEETTCCCCSS----EEEEETTEEEEEESSCCGGGCSEEEEEE-EETT--EEE
T ss_pred EEEcCCCcEEEEEeecCCC---CCeEEEECCCCCCccc----eEEEcCCccEEEECcCCHHHCEEEEEEE-EECC--ceE
Confidence 3455899999999999887 6889999843 22211 0111134567999999999999999999 6663 334
Q ss_pred ceeeeeEEEecce-eeeeceeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEe
Q psy15235 196 LAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271 (323)
Q Consensus 196 ~~~~~l~v~~~p~-~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 271 (323)
...+.|.|..+|. +.+.....+.+|+.++|.|.+.|.++ +.+.|++++..+.......... .........+|+|.
T Consensus 81 ~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~l~i~ 159 (202)
T 1vca_A 81 EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD-RKSLETKSLEVTFT 159 (202)
T ss_dssp EEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCS-SCCCEEEEEEEEEC
T ss_pred eeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccC-cCcceEEEEEEEEE
Confidence 5677888877653 33333466889999999999987643 3699999998875321100000 00001134667889
Q ss_pred ecCcCCCeEEEEEEeecccCCC---CCceeEEEEEEcceec
Q psy15235 272 EATMADRGNYYCHGNNVATRNS---QPNEAFVYVRVKGKSF 309 (323)
Q Consensus 272 ~v~~~d~G~y~C~a~n~~g~~~---~~~~~~~~l~v~~~~~ 309 (323)
.+..+|.|.|+|.|.|..|... ...+..+.|.|..+|.
T Consensus 160 ~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 160 PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred eeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 8998999999999999986511 1245678888877664
No 119
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.90 E-value=1.6e-21 Score=171.88 Aligned_cols=264 Identities=14% Similarity=0.225 Sum_probs=154.3
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----C--ceEEEEEc--Ccccee----ec---------cCcceEEEeeeeCCeEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----F--EQVKWQLN--GRNINQ----SS---------VDSGFAATANLTEDNFKY 82 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~--~~v~W~~~--g~~~~~----~~---------~~~~~~~~~~~~~~~~~l 82 (323)
.+..+..+.+.+|++|+|.|.+.+ . ..+.|+|+ |+.+.. .. ...+..+..+...+.+.|
T Consensus 3 ~l~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (512)
T 1zvo_C 3 QLQESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSL 82 (512)
T ss_pred EEECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEE
Confidence 456677888999999999999542 2 67999995 332211 00 111222222223456788
Q ss_pred EEeecc--cCcceEEEeeccCC-----------c----c--ceeeeeee--CCceeE-------EecCCcEEEEEEeecC
Q psy15235 83 SIHEAI--LESGYVQSSLFIPR-----------M----N--AITGNYDI--EPKYKV-------FEYRVPFTLKCNVTSP 134 (323)
Q Consensus 83 ~i~~~~--~~G~Y~C~~~~~~~-----------~----~--~~~~~~~~--~~~~~~-------~~~g~~v~l~C~~~~~ 134 (323)
.|.+++ |+|.|+|.+.+..+ . . .+.+.... .|.+.. ...++.++|.|.+.+.
T Consensus 83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~ 162 (512)
T 1zvo_C 83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGY 162 (512)
T ss_pred EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence 888877 49999999986531 0 1 11111000 122211 1135789999999997
Q ss_pred CCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce---------eee
Q psy15235 135 PPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA---------QAD 200 (323)
Q Consensus 135 ~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~---------~~~ 200 (323)
.|. ...|.|++++...... ...++.+ .....|.|.....+ .|.|+|.+ .|..+...... ...
T Consensus 163 ~P~-p~~v~W~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~-~g~ytC~v-~n~~~~~~~~~~~~~~~~~~~~~ 238 (512)
T 1zvo_C 163 HPT-SVTVTWYMGTQSQPQRTFPEIQRRDSYY-MTSSQLSTPLQQWR-QGEYKCVV-QHTASKSKKEIFRWPESPKAQAS 238 (512)
T ss_pred ecC-ceEEEEEcCcccCceEecCceecCCCCE-EEEEEEEEcHHHcC-CceEEEEE-EeCCCCceEEEecCCCCCCcCCE
Confidence 542 2499999975432110 0001112 22345788777666 89999999 67644322222 112
Q ss_pred eEEEec----------------------------------------------------ceeee-e-ceeEEeeCCeEEEE
Q psy15235 201 FDVIMK----------------------------------------------------PTAKL-V-ETLTVIEGEKLRLE 226 (323)
Q Consensus 201 l~v~~~----------------------------------------------------p~~~~-~-~~~~~~~g~~~~l~ 226 (323)
+.+..+ |.+.+ + ....+.+|+.++|.
T Consensus 239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~ 318 (512)
T 1zvo_C 239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT 318 (512)
T ss_pred EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEE
Confidence 333322 22221 1 12235579999999
Q ss_pred EEEecCCC--CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 227 CLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 227 C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|.+.|.++ ..++|+++|..+.............++ ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 319 C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~ 386 (512)
T 1zvo_C 319 CFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP 386 (512)
T ss_pred EEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence 99988633 389999999875411100000000111 123467999999999999999999998865
No 120
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.90 E-value=5.6e-22 Score=156.23 Aligned_cols=182 Identities=14% Similarity=0.220 Sum_probs=116.7
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc-----------c--cccccCcEE-------eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT-----------E--ATELSGRLT-------QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~-----------~--~~~~~~~~~-------~~~~~l~i~~ 172 (323)
+++...+.+|++++|.|.+.+.++.....|.|+|++.... . ...+..|.. .....|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 3344668899999999999875532235899999764221 1 111222322 3467899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~ 250 (323)
++.+|+|.|+|.+ .|.. ......+.+...+... ......+.+|+.+.|.|.+.| .|.|.+.|++++..+....
T Consensus 90 v~~~D~G~Y~C~a-~n~~----~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~ 164 (226)
T 4f80_A 90 VTASDSGKYLCYF-QDGD----FYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV 164 (226)
T ss_dssp CCGGGCEEEEEEE-EETT----EEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCE
T ss_pred CchHHCeeEEEEE-ECCC----cEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCC
Confidence 9999999999999 6652 2334445554433222 333566788999999999987 5999999999765443222
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
...... ..++ ....+.+..++.+|+|+|+|.|.|..|. .+..+.|.|.+
T Consensus 165 ~~~~~~--~~~g-~~~v~s~l~v~~~d~G~YtC~a~N~~g~----~~~~~~v~v~e 213 (226)
T 4f80_A 165 EAPVVA--DGVG-LYAVAASVIMRGSSGEGVSCTIRSSLLG----LEKTASISIAD 213 (226)
T ss_dssp ECCCEE--CTTS-CEEEEEEEEECC----CEEEEEEETTTT----EEEEEEECCCT
T ss_pred ceEEEE--CCCC-cEEEEEEEEechhcCcEEEEEEEeCCCC----eEEEEEEEECC
Confidence 211111 1111 1234556678889999999999999965 77888888765
No 121
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.90 E-value=3.2e-22 Score=161.15 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=134.1
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
|.+.+.|....+.+|+.++|.|.+.+.+ .+ .+.|+++|..+.. ....|.|.+++.+|+|.|+|.+
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~---~~~~~~W~~~g~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~- 67 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLP---GSSSTQWFLNGTATQT----------STPSYRITSASVNDSGEYRCQR- 67 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCC---CTTCEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEE-
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCC---CCceEEEEECCEEeec----------cCCeEEEecCCcccCeEEEEEE-
Confidence 4555666666788999999999998887 45 9999999998865 3567999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235 187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTAN 265 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
.+. ..+..+.+.|..++....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... ..
T Consensus 68 ~~~----~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~-------------~~ 130 (262)
T 3rjd_A 68 GLS----GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------------WN 130 (262)
T ss_dssp SSS----CCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------EC
T ss_pred ecC----CccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------------CC
Confidence 665 244567788877776656666778899999999999 778888999999998875221 25
Q ss_pred eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
..|.|.+++.+|.|.|+|.|.|..+. ....+.|.|.+.
T Consensus 131 ~~l~i~~~~~~d~G~Y~C~~~n~~~~----~~~~~~l~V~~~ 168 (262)
T 3rjd_A 131 SNLTILKTNISHNGTYHCSGMGKHRY----TSAGISVTVKEL 168 (262)
T ss_dssp CCEEESSCCGGGCEEEEEEEESSSEE----EEECEEEEEECS
T ss_pred CeEEEEECChhhCEEEEEEEeCCCCc----cccceEEEeccC
Confidence 77999999999999999999999855 666777777653
No 122
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.89 E-value=5.9e-22 Score=157.18 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=128.8
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+...|.. .+.+|++|+|.|.+.+. ...+.|+|++..+.... ...........|.|.+++.+|+|.|+|.+
T Consensus 7 kP~i~~~P~~-~v~~G~~VtL~C~~~~~----~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~- 79 (242)
T 1p6f_A 7 KPFIWAEPHF-MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDR-PKPPERINKVKFYIPDMNSRMAGQYSCIY- 79 (242)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEEC-CSSCTTCCEEEEEECSCCGGGCEEEEEEE-
T ss_pred CCEEEeeCCC-ccCCCCcEEEEEeeCCC----CcEEEEEECCCcccccc-ccccCCcceeEEEecCCCcccCeEEEEEE-
Confidence 3445555554 67889999999998653 36899999998764200 00001135678999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 187 DPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+..+....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+. .+.+.|+++|..+.. ..... .
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~---~~~~~------~ 149 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGYG------K 149 (242)
T ss_dssp EETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE---EEEEC------S
T ss_pred ecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc---cccCC------C
Confidence 5543233345566777764 566665556678899999999999754 468999999976542 11111 1
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
....|.|.+++.+|+|.|+|.|.|.... ....+..+.|.|.+.+.
T Consensus 150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~~~-~s~~S~~~~l~V~~~~~ 194 (242)
T 1p6f_A 150 VQAEFPLGPVTTAHRGTYRCFGSYNNHA-WSFPSEPVKLLVTGDIE 194 (242)
T ss_dssp SEEEEEEEECCGGGCEEEEEEEEEETTE-ECCCCCCEEEEEEC---
T ss_pred ceEEEEeCCCccccCEEEEEEEECCCCc-ccCCCCCEEEEEeccCC
Confidence 3688999999999999999999987411 12356677788877543
No 123
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.89 E-value=5.3e-22 Score=162.42 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=136.3
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
.+.+.+.+....+.+|+.++|.|.+.+.+ . .+.|++ +|..+.. ..++. .....|.|.+++.+|+|.|
T Consensus 4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p---~-~v~W~~~~g~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 75 (291)
T 2wim_A 4 LLQVTISLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIIS----TQRVVVQKEGVRSRLTIYNANIEDAGIY 75 (291)
T ss_dssp CCEEEESCSEEEEETTCCEEEEEEEESCC---S-EEECBCTTCCBCCC----BTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CceEEEeccceEecCCCcEEEEEEEeCCC---C-ceEEECCCCcCccC----CCcEEEecCCCEEEEEEccCCcccCEEE
Confidence 35566677777889999999999999876 4 899999 6766655 44443 3356899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCC
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHP 259 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~ 259 (323)
+|.+ .+..+. .....+.+.|..+|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...++...
T Consensus 76 ~C~~-~n~~g~-~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--- 150 (291)
T 2wim_A 76 RCQA-TDAKGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--- 150 (291)
T ss_dssp EEEE-ECSSSC-EEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC---
T ss_pred EEEE-ecccCc-eEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc---
Confidence 9999 665332 22456677777766554 44456788999999999999999999999999987754 23444444
Q ss_pred CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
....|.|.++..+|.|.|+|.|.|..+. ......+.|.|..+|..
T Consensus 151 ----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~~~~~~~~~v~~~p~~ 195 (291)
T 2wim_A 151 ----ANNNLQILNINKSDEGIYRCEGRVEARG--EIDFRDIIVIVNVPPAI 195 (291)
T ss_dssp ----TTSCEEETTCCGGGCEEEEEEEEETTTT--EEEEEEEEEEEEBCCCC
T ss_pred ----cCCCEEEEecchhhCEEEEEEEEECCCC--eeEEeeEEEEeccCCcc
Confidence 3567999999999999999999998744 22345566667665544
No 124
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=157.95 Aligned_cols=185 Identities=17% Similarity=0.259 Sum_probs=122.5
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-------~~~~~l~i~~ 172 (323)
|....+..|++++|.|.+.+.++.....|.|+|++..+.. ...+..++. ....+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 4556678899999999998876321236899997754322 111223332 2346799999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc--eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~ 250 (323)
++.+|+|.|.|.+ .+..+. .......+.+..++ .........+..|+.+.+.|.+.|.|+|.+.|++++..+....
T Consensus 86 v~~~D~G~Y~C~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~ 163 (218)
T 4frw_A 86 AVQADEGEYECRV-STFPAG-SFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163 (218)
T ss_dssp CCGGGCEEEEEEE-EEETTE-EEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred ccHHHCCceeEEE-EeccCc-eeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence 9999999999999 443211 12223333333333 2223334556779999999999999999999999988765322
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
. ... .......+.|+|.++..+|.|.|+|.|.|..|. .....++.|.|..
T Consensus 164 ~-~~~---~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~--~~~~~t~~v~V~~ 213 (218)
T 4frw_A 164 S-FKH---SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL--QDQRITHILHVSH 213 (218)
T ss_dssp E-EEC---SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCEEC
T ss_pred e-Eec---CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC--eEEEEEEEEEECc
Confidence 1 111 111123578999999999999999999999976 3344555555543
No 125
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.89 E-value=3e-21 Score=151.53 Aligned_cols=190 Identities=14% Similarity=0.198 Sum_probs=121.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECCeeccc-----------cccccCcEE-------eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGNKSITE-----------ATELSGRLT-------QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~~~~~~-----------~~~~~~~~~-------~~~~~l~i~~ 172 (323)
.+....+..|++++|.|.+.+.++. ....+.|++++..+.. ...+.++.. .....|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 4455568899999999998765421 1348999997643321 011223433 1346899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQ 250 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~ 250 (323)
++.+|+|.|+|.+ .+. ......+.|.|..++... ......+.+|+.+.|.|.+.|+|.|.+.|+++ +..+. ..
T Consensus 87 v~~~D~G~Y~C~~-~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~-~~ 161 (222)
T 3sbw_C 87 VKLQDAGVYRCMI-SYG---GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS-GK 161 (222)
T ss_dssp CCGGGCEEEEEEE-ESS---SEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC-CE
T ss_pred cccccCeEEEEEE-EeC---CCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec-Cc
Confidence 9999999999999 662 124456677777655332 22123567899999999999999999999998 44443 22
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
....... ...+ ......+..+..+|.|.|+|.|.|..|. ....+.|.|.+.|....+
T Consensus 162 ~~~~~~~-~~~~-~~~~~~~l~v~~~d~g~Y~C~a~n~~g~----~~~~~~l~v~~~p~~~~p 218 (222)
T 3sbw_C 162 TTTTNSK-REEK-LFNVTSTLRINTTTNEIFYCTFRRLDPE----ENHTAELVIPELPLAHPP 218 (222)
T ss_dssp EEEEECC------CEEEEEEEEEECCTTCEEEEEEEETTTT----EEEEEEEECCCC------
T ss_pred cceEEEc-CCCC-CEEEEEEEEEeccCCcEEEEEEEeCccc----eeeEEEEEecCCcccCCC
Confidence 2221111 1011 1122223345678999999999999965 888999999887765543
No 126
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=170.46 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=143.9
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEee-------cCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCC
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVT-------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDA 178 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~-------~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 178 (323)
..|.+...+....+.+|+.+.|.|.+. +.+ .+.|.|++++..+........++......|.|.+++.+|+
T Consensus 17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~ 93 (339)
T 3o4o_C 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSP---RINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS 93 (339)
T ss_dssp -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSS---CCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCC
T ss_pred hhHhhCcCceEEEEECCccEEEEeccccccccccCCC---CceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccC
Confidence 345666677778899999999999997 666 6899999999874332222345545566899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeCCeEEEEEE-----EecCCCCcEEEEECCeeeeccC
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEGEKLRLECL-----VVGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~ 250 (323)
|.|+|.+ .+.. ......+.|.|..++... ......+.+|+.+.|.|. +.|.|.+.+.|++++..+....
T Consensus 94 G~Y~C~~-~n~~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~ 170 (339)
T 3o4o_C 94 GTYVCTT-RNAS--YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170 (339)
T ss_dssp EEEECCE-EETT--EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred EEEEEEE-ECCc--ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence 9999999 6653 345566677777654321 222346789999999999 7888999999999999887655
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.++.... ....|.|.++..+|.|.|+|.|.|..|.........+.|.|.+.+
T Consensus 171 ~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~ 222 (339)
T 3o4o_C 171 EKFLSVR------GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK 222 (339)
T ss_dssp SSEEECT------TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred ceeEEcC------CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence 5555541 235899999999999999999999886532346677888887543
No 127
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.89 E-value=4e-22 Score=159.96 Aligned_cols=205 Identities=13% Similarity=0.162 Sum_probs=116.5
Q ss_pred eecccCcceEEEeeccCCccc-----eeeeeeeCCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---
Q psy15235 85 HEAILESGYVQSSLFIPRMNA-----ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT--- 152 (323)
Q Consensus 85 ~~~~~~G~Y~C~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~--- 152 (323)
.+..|+|.|+|.+........ ..+.+...|....+.+|++++|.|.+.+.++. ..+.+.|+|++ ..+.
T Consensus 11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~ 90 (254)
T 2c1o_A 11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLI 90 (254)
T ss_dssp ---------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEE
T ss_pred ecCCccEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEE
Confidence 345579999999972211111 01222224566678899999999999887631 02789999843 2221
Q ss_pred -----ccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEee
Q psy15235 153 -----EATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIE 219 (323)
Q Consensus 153 -----~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~ 219 (323)
.......++. .....|.|.+++.+|+|.|+|.+ .+..+.. ......+.|.. +|.+.. +.......
T Consensus 91 ~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~~~~~ 168 (254)
T 2c1o_A 91 YLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQ-GSHFPPT-FGAGTKLELKRADAAPTVSIFPPSSEQLT 168 (254)
T ss_dssp ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE-CSSSSCE-EBCCEEEEECCCCBCCEEEEECCCHHHHH
T ss_pred EeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEE-EcCcceE-ecCCEEEEECCCCCCCeeEeecCChhhcc
Confidence 0111234554 24558999999999999999999 6653211 11223455543 455543 22222346
Q ss_pred CCeEEEEEEEecC-CC-CcEEEEECCeeeecc-CCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 220 GEKLRLECLVVGS-PP-PTVEWRIGNDTYFRS-QGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 220 g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|+.++|.|.+.|. |+ +.+.|+++|..+... ..+.......++. ...+.|.|.++..+|+|.|+|.|.|....
T Consensus 169 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 8899999999874 44 469999999887543 1111111101110 13578999999999999999999998843
No 128
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.89 E-value=1.1e-22 Score=153.56 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=111.7
Q ss_pred eEEecCCcEEEEEEeec-CCCCCCceEEEEECCeeccc------cccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 117 KVFEYRVPFTLKCNVTS-PPPGDDYQIVWYKGNKSITE------ATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
..+.+|++++|.|.... ..+ .+.|.|+|++..+.. .....+++. ..+..|.|.+++.+|+|.|+|.+ .+
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~--~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~-~n 82 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDD--IDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV-YS 82 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTT--EEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEE-EE
T ss_pred EEEEcCCcEEEcCCCCCcccc--cccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEE-Ee
Confidence 34678999999995333 222 579999999875531 011144554 34456999999999999999999 66
Q ss_pred CCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235 189 KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 268 (323)
..+.......+.|.|..++.. ......+..+.|.|.+.|.|+|.+.|++++..+... ..+
T Consensus 83 ~~g~~~~~~~~~l~V~~~~~~----p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~----------------~~~ 142 (176)
T 1hng_A 83 TNGTRILNKALDLRILEMVSK----PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL----------------RQK 142 (176)
T ss_dssp TTCCEEEEEEEEEEEECCCCC----CEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE----------------SSS
T ss_pred CCCCEEEEEEEEEEEeCCCCC----CEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC----------------CcE
Confidence 643322345566666653210 111223556999999999999999999999887532 124
Q ss_pred EEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.|.++..+|+|.|+|.|.|..|. ....+.|.+
T Consensus 143 ~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~~ 174 (176)
T 1hng_A 143 TMSYQWTNLRAPFKCKAVNRVSQ----ESEMEVVNC 174 (176)
T ss_dssp EEEEECSCCSSCEEEEEEETTEE----EEEEECCCC
T ss_pred EEEEEEccCCeEEEEEEEecCCC----ceecccccC
Confidence 55578899999999999999966 566655544
No 129
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.89 E-value=2.1e-22 Score=158.18 Aligned_cols=191 Identities=18% Similarity=0.314 Sum_probs=122.8
Q ss_pred eEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccc---------cccccCcEE-------eceeEEEEeeeecCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITE---------ATELSGRLT-------QSKDSITIRKTTVDDA 178 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~---------~~~~~~~~~-------~~~~~l~i~~~~~~d~ 178 (323)
..+.+|++++|.|.+.+.++ ...+.+.|++++..... ...+.+++. .....|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 44678999999999887642 11479999997643311 011234443 1267899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeee
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIK 254 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~ 254 (323)
|.|+|.+ .+.. .....+.|.|..+ |.+.......+.+|+.+.|.|.+ .+.|.+.+.|++++...........
T Consensus 85 G~Y~C~~-~~~~---~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~ 160 (222)
T 4i0k_A 85 GSYTCFV-SIQD---FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS 160 (222)
T ss_dssp SCEEEEE-EECC---CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred EEEEEEE-EeCC---CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence 9999999 5432 2344556666553 56665555667889999999999 8899999999994433222211111
Q ss_pred eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhhhh
Q psy15235 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAI 317 (323)
Q Consensus 255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~~~ 317 (323)
.. .........|.|.++..+|.|.|+|.|.|..|. ....+.|.|.++|..+.+...+
T Consensus 161 ~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~~~~~~~~ 217 (222)
T 4i0k_A 161 QM--ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ----QDAHGSVTITGQPLTFPPETGH 217 (222)
T ss_dssp EE--ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT----EEEEEEEECCC-----------
T ss_pred EE--cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC----CceEEEEEEeCCccccCCccCc
Confidence 11 111112456899999999999999999999965 8899999999998777655443
No 130
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.88 E-value=1.4e-22 Score=156.86 Aligned_cols=156 Identities=18% Similarity=0.317 Sum_probs=110.9
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
+.+|++++|.|.+ + .+.|.|+|+|..+.. . ......|.|.+++.+|+|.|+|.+ .+. .+..
T Consensus 15 ~~~G~~v~L~C~~---p---~~~i~W~k~g~~l~~----~---~~~~~~L~i~~v~~~DsG~Y~C~~-~~~-----~s~~ 75 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---E---AKNITWFKDGKMIGF----L---TEDKKKWNLGSNAKDPRGMYQCKG-SQN-----KSKP 75 (204)
T ss_dssp CCSSSEEEEEECS---C---SSEEEEEETTEEEEE----E---ESSCCCEEEEEGGGCCEEEEEEES-SSS-----CCCC
T ss_pred ecCCCeEEEEEcC---C---CCEEEEEECCEECCC----C---CCCCCeEEeCCCCcCCCEEEEEEe-cCC-----CCee
Confidence 4679999999998 4 579999999988764 1 123567999999999999999997 543 2223
Q ss_pred eeeEEEe-------------------------------cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235 199 ADFDVIM-------------------------------KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247 (323)
Q Consensus 199 ~~l~v~~-------------------------------~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~ 247 (323)
+.+.+.. ++.+...+.....+|++++|.|. +.|.|.+.|++++..+.
T Consensus 76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~ 153 (204)
T 1sy6_A 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIG 153 (204)
T ss_dssp EEEEEEC------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEES
T ss_pred EEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEECC
Confidence 4444430 11122122222338999999998 78889999999998875
Q ss_pred ccCC-eeeeecCCCCCCcceeEEEeec-CcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 248 RSQG-RIKLSEHPEKGTANSVLQIDEA-TMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 248 ~~~~-~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.... +.... ....|+|.++ +.+|+|.|+|.|.|..|. ..+..++|.|.
T Consensus 154 ~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~---~~s~~l~l~~~ 203 (204)
T 1sy6_A 154 GDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPE---DANFYLYLRAR 203 (204)
T ss_dssp CCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGG---GSSCEEEEEEC
T ss_pred CccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCC---ceeEEEEEEEe
Confidence 4321 11111 2678999999 999999999999999975 24567776654
No 131
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.88 E-value=1e-22 Score=155.38 Aligned_cols=146 Identities=16% Similarity=0.316 Sum_probs=108.0
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee-eecCCCeeEEEEEEcCCCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK-TTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~ 192 (323)
++..+...|++++|.|.+.+ + . .|.|+|+|..+.. ..+..|.|.+ +..+|+|.|+|.+ .|..+.
T Consensus 6 ~~~~v~~~G~~v~L~C~~~~-~---~-~i~W~k~g~~l~~---------~~~~~L~I~~~~~~~D~G~Y~C~a-~n~~g~ 70 (186)
T 1jbj_A 6 IEYKVSISGTSVELTCPLDS-D---E-NLKWEKNGQELPQ---------KHDKHLVLQDFSEVEDSGYYVCYT-PASNKN 70 (186)
T ss_dssp CCCEEEEETTEEEEECSSCC-C---T-TCEEEETTEEECS---------CCCSEEEEESCCTTTSCEEEEEEC-SSCCCC
T ss_pred eEEEEEeCCcEEEEEEeCCC-C---C-ceEEEECCEECCC---------CCCCEEEECCCCccccCEEEEEEE-EeCCCc
Confidence 34455678999999999987 4 2 3999999998876 2456899999 9999999999999 777444
Q ss_pred CCCceeeeeEEEe--ccee----------------e---ee--ce---eEEeeCCeEEEEEEEecCCCCcEEEEECCeee
Q psy15235 193 TTPLAQADFDVIM--KPTA----------------K---LV--ET---LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246 (323)
Q Consensus 193 ~~~~~~~~l~v~~--~p~~----------------~---~~--~~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~ 246 (323)
....+.+.|.. ++.. . .. .. ..+.+|+++.|.|.+ |.|.+.|+++|..+
T Consensus 71 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i 145 (186)
T 1jbj_A 71 --TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSII 145 (186)
T ss_dssp --CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEEC
T ss_pred --EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEEC
Confidence 33333333322 2210 0 00 00 123489999999998 78999999999987
Q ss_pred eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
..... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 146 ~~~~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 146 SPLNA------------TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp CCSSC------------CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred cccCC------------CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 53211 3678999999999999999999999965
No 132
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.88 E-value=3.9e-21 Score=148.55 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=115.4
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
|.+...|. ..+.+|++++|.|.+.+ + .+.+.|+|+|..+..... ..+.. .....|.|.+++.+|+|.|+|.+
T Consensus 9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a 82 (201)
T 1nkr_A 9 PSLLAHPG-PLVKSEETVILQCWSDV-M---FEHFLLHREGMFNDTLRL-IGEHHDGVSKANFSISRMTQDLAGTYRCYG 82 (201)
T ss_dssp CEEEEESC-SEEETTCCEEEEEEESS-C---CSEEEEEEESSSCEEEEE-ECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CeEEEEcC-CccCCCCcEEEEEeccC-C---CCEEEEEECCCcCCccee-eeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence 33444444 45778999999999974 4 579999999876543000 01111 34678999999999999999999
Q ss_pred EcCCCC---CCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235 186 IDPKST---NTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP 259 (323)
Q Consensus 186 ~~~~~~---~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 259 (323)
.+... ....+..+.|.|.. +|.+...+...+.+|+.++|.|.+.+ +.+.+.|+++|..+..........
T Consensus 83 -~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~--- 157 (201)
T 1nkr_A 83 -SVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKV--- 157 (201)
T ss_dssp -EBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEE---
T ss_pred -ecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccccc---
Confidence 44321 12334556677764 46666544567889999999999975 567899999997654221111111
Q ss_pred CCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 260 EKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.....|+|.+++ |+|.|+|.|.+..
T Consensus 158 -~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 158 -NGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp -TTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred -CCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 01126789999998 9999999999753
No 133
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.88 E-value=8.8e-22 Score=152.59 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=110.5
Q ss_pred EeeceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235 27 YFGDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP 101 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~ 101 (323)
.+....+.+|+.+.|.|.. .|.+.++|++||.++... ....+..+...+...|.|.+++. +|.|+|.+.+..
T Consensus 8 ~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~---~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~ 84 (207)
T 3rbs_A 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 84 (207)
T ss_dssp EEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS---SSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETT
T ss_pred cCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccC---CCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCC
Confidence 3445789999999999993 578999999999988664 12233333334667788887754 999999887732
Q ss_pred Cccce---------------------------eeeeeeCCceeEEecCCcEEEEEEeecC-CCCCCceEEEEECCeeccc
Q psy15235 102 RMNAI---------------------------TGNYDIEPKYKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKSITE 153 (323)
Q Consensus 102 ~~~~~---------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~ 153 (323)
..... .|.+.... ...+.+|+.+.|.|.+.+. | .+.|+|+|+|.++..
T Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P---~p~i~W~k~g~~l~~ 160 (207)
T 3rbs_A 85 ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKK---ETHIVWYKDEREISV 160 (207)
T ss_dssp EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCT---TCEEEEEETTEEECC
T ss_pred eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCC---CCEEEEEECCEECCC
Confidence 22111 11111111 2446789999999999998 6 789999999999876
Q ss_pred cccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 154 ATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 154 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
+.++. .....|.|.++..+|+|.|+|.| .|..
T Consensus 161 ----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~ 194 (207)
T 3rbs_A 161 ----DEKHDFKDGICTLLITEFSKKDAGIYEVIL-KDDR 194 (207)
T ss_dssp ----CCCCCCSSEEEEEEETTCCGGGCEEEEEEE-EETT
T ss_pred ----CCceEcCCCEEEEEECCCCcccCEEEEEEE-EcCC
Confidence 33443 34567999999999999999999 7773
No 134
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=4.4e-21 Score=153.33 Aligned_cols=190 Identities=19% Similarity=0.186 Sum_probs=128.0
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
|.+...|. ..+.+|++++|.|.+.+ + ...+.|+|+|..+..... ..+.. .....|.|.+++.+|+|.|+|.+
T Consensus 8 P~i~~~P~-~~V~~G~~VtL~C~~~~-~---~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 81 (257)
T 1b6u_A 8 PSLLAHPG-PLVKSEETVILQCWSDV-R---FQHFLLHREGKFKDTLHL-IGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81 (257)
T ss_dssp CEECCBSC-SEEESSCCEEEEEEESS-C---CSEEEEEEESTTCEEEEE-ECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred CEEEEcCC-CEecCCCCEEEEEecCC-C---CcEEEEEECCCCCCccee-eeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence 34444454 55778999999999875 3 468999999875532000 01111 34678999999999999999999
Q ss_pred EcCCCC---CCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235 186 IDPKST---NTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP 259 (323)
Q Consensus 186 ~~~~~~---~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 259 (323)
.+... ....+..+.|.|.. +|.+...+...+.+|++++|.|.+.+. ++.+.|+++|..+..........
T Consensus 82 -~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~--- 156 (257)
T 1b6u_A 82 -SVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKV--- 156 (257)
T ss_dssp -ECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCS---
T ss_pred -eccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccccc---
Confidence 54321 12345566777764 466664445568899999999999865 46899999998765322111110
Q ss_pred CCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcceecCc
Q psy15235 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~~~~ 311 (323)
.+.....|.|.+++ |+|.|+|.|.|..+.. ....+..+.|.|.+.|...
T Consensus 157 -~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~ 206 (257)
T 1b6u_A 157 -NGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNS 206 (257)
T ss_dssp -SSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---
T ss_pred -CCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCC
Confidence 11136889999998 9999999999764321 1345677889999887654
No 135
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.87 E-value=1.4e-21 Score=152.41 Aligned_cols=172 Identities=16% Similarity=0.285 Sum_probs=117.0
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
...+.+|++++|.|.+.+.+ .+.+.|+|. +..... .....+++. .....|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADY 85 (213)
T ss_dssp EEEEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEE
Confidence 66788999999999999777 789999982 221110 001234443 3467899999999999999
Q ss_pred EEEEEcCCCCC-CCCceeeeeEEE----ecceeeee-ceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCee
Q psy15235 182 SCRLIDPKSTN-TTPLAQADFDVI----MKPTAKLV-ETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRI 253 (323)
Q Consensus 182 ~C~~~~~~~~~-~~~~~~~~l~v~----~~p~~~~~-~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~ 253 (323)
.|.+ .+..+. ........|.|. .+|.+... ....+.+|+.++|.|.+.|. |+ +.+.|+++|..+.......
T Consensus 86 ~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 164 (213)
T 3mj8_L 86 YCQS-WDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT 164 (213)
T ss_dssp EEEE-EETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred EEEe-ccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccC
Confidence 9999 555321 123455677777 56655532 23334479999999999885 44 4899999999875321111
Q ss_pred eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 254 ~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
............+.|+|.++..+|.|.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 165 QPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp CCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred CcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 10000000112467999999999999999999999844
No 136
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.87 E-value=6.6e-22 Score=159.86 Aligned_cols=253 Identities=14% Similarity=0.155 Sum_probs=97.4
Q ss_pred eeceEEecCCcEEEEEEec-cCce-EEEEEc-CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235 28 FGDTEIMEGAPINISCILT-IFEQ-VKWQLN-GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN 104 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-~~~~-v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~ 104 (323)
|....|.+|+++.|+|... +.+. +.|.-. ++..... .......+.+.++++.|.|+|++.......
T Consensus 6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~-----------~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~ 74 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQEDSQPMCYSNCPDGQS 74 (291)
T ss_dssp CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCC-----------SCSSEEEEEEESCCSCCCCEEEEECSSCEE
T ss_pred CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccccc-----------CCCceEEEEEEecccCCeEEEEEEcCCccE
Confidence 4567899999999999954 3444 888541 1111100 011222456667766778999997543322
Q ss_pred ceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeec
Q psy15235 105 AITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV 175 (323)
Q Consensus 105 ~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 175 (323)
.....+.+ .+....+.+|+.++|.|.+.+..|.+.++|+|||++..+.... ... ......+.+.....
T Consensus 75 ~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~-~~~--~~~~~~l~~~~~~~ 151 (291)
T 1mq8_A 75 TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-AVG--EPAEVTTTVLVRRD 151 (291)
T ss_dssp EEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE-CCB--TTEEEEEECCCSSS
T ss_pred EEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc-CCC--CCceEEEEeeeeec
Confidence 22222222 1111225679999999999998765335799999998876411 000 12334566666666
Q ss_pred CCCeeEEEEEEcCCCCC------CCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEEecCCCC---cEEEEECCe
Q psy15235 176 DDAGQYSCRLIDPKSTN------TTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLVVGSPPP---TVEWRIGND 244 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~~------~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~ 244 (323)
+|.+.|+|+| .+..+. ...+....|.|.++|... +.....+.+|+.++|.|.+.|+|++ .+.|+++|.
T Consensus 152 D~g~~~~C~A-~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~ 230 (291)
T 1mq8_A 152 HHGANFSCRT-ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230 (291)
T ss_dssp CSSCEEEEEE-EEECGGGTSCEEEECCCCEECBC----------------------------------------------
T ss_pred cCCceEEEEE-EecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCE
Confidence 6667999999 554321 124666788888875321 1112357889999999999998554 599999998
Q ss_pred eeeccCCeeeeecCCCCCCcceeEEEeec---CcCC--CeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEA---TMAD--RGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~d--~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
.+.... . . .+..+++... .+++ .+.|+|.|.|.. .+.+....|.|.+-|.+
T Consensus 231 ~l~~~~---~----~----~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~l~v~~~~~~ 286 (291)
T 1mq8_A 231 RLNPTV---T----Y----GNDSFSAKASVSVTAEDEGTQRLTCAVILGN----QSQETLQTVTIYSFPAP 286 (291)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecCcee---e----e----cCCeEEEEEecceeEcCCCCEEEEEEEEeCC----cceEEEEEEEEEcCCCc
Confidence 875311 0 0 1222333322 3434 456778888644 23455666666654443
No 137
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-20 Score=161.78 Aligned_cols=179 Identities=20% Similarity=0.205 Sum_probs=111.2
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
..|+.++|.|.+.+..|. ...|+|+++|..+...... ++.+ .....|.|.....+|.|.|+|.| .|..+.
T Consensus 310 ~~g~~~~L~C~v~g~~P~-~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~-~~~s~L~i~~~~~~d~g~y~C~a-~n~~~~ 386 (512)
T 1zvo_C 310 WLRDKATFTCFVVGSDLK-DAHLTWEVAGKVPTGGVEEGLLERHSNGSQ-SQHSRLTLPRSLWNAGTSVTCTL-NHPSLP 386 (512)
T ss_pred ccCCceEEEEEEeceECC-CeEEEEEECCEeccCceeccceecCCCCeE-EEEEEEEEchHHhcCCCeEEEEE-EeCCCC
Confidence 469999999999987542 3599999999876521000 1111 22346888888888999999999 676433
Q ss_pred CCCceeeeeEE----EecceeeeeceeEEeeCCeEE-EEEEEecCCCC--cEEEEECCeeeeccCCee-eeecCCCC--C
Q psy15235 193 TTPLAQADFDV----IMKPTAKLVETLTVIEGEKLR-LECLVVGSPPP--TVEWRIGNDTYFRSQGRI-KLSEHPEK--G 262 (323)
Q Consensus 193 ~~~~~~~~l~v----~~~p~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~--~ 262 (323)
.. ...+.... ..+|.+....... .|+.+. |.|.+.|++++ .+.|++||..+....... ......++ .
T Consensus 387 ~~-~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~ 463 (512)
T 1zvo_C 387 PQ-RLMALREPAAQAPVKLSLNLLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTF 463 (512)
T ss_pred CC-ceeEEeecCCCCCCCCEEEEEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEE
Confidence 22 22222111 2345544222111 788999 99999986443 689999998875432110 01100111 1
Q ss_pred CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
...+.|.|.....+|.|.|+|.|.|.... ........|.|..
T Consensus 464 ~~~s~L~v~~~~~~~~g~YtC~v~h~~l~--~~~~~~~~~~v~~ 505 (512)
T 1zvo_C 464 WAWSVLRVPAPPSPQPATYTCVVSHEDSR--TLLNASRSLEVSY 505 (512)
T ss_pred EEEEEEEECchhcCCCCeEEEEEEecCCC--CceEEEEEEEecc
Confidence 12356788888888899999999998754 2344455555543
No 138
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.87 E-value=4.1e-21 Score=153.46 Aligned_cols=187 Identities=12% Similarity=0.263 Sum_probs=116.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCC--CceEEEEECCeeccc-----------cccc--cCcEE-----eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITE-----------ATEL--SGRLT-----QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~-----------~~~~--~~~~~-----~~~~~l~i~~ 172 (323)
.+....+..|++++|.|.+.+.++.. ...+.|++++..... ...+ ..++. .....|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 45555688999999999998876310 225999996432210 0000 11111 2345699999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS- 249 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~- 249 (323)
++.+|+|.|+|.+ .+.. ........|.|..+|.+.......+..|..+.|.|.+.| .|.+ .+.|++++..+...
T Consensus 89 v~~~D~G~Y~C~~-~~~~--~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~ 165 (248)
T 3pv7_A 89 IQLEEAGEYRCEV-VVTP--LKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI 165 (248)
T ss_dssp CCGGGCEEEEEEE-EETT--EEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCE
T ss_pred CCHHHCeEEEEEE-EeCC--ccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcc
Confidence 9999999999999 5552 234567788888888877655555667888899999988 7888 99999998643211
Q ss_pred -----CCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 250 -----QGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 250 -----~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
...........+ ....+.|.|.....+|.|.|+|.|.|..+. ......+.|.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~--~~~~~~v~l~V 224 (248)
T 3pv7_A 166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLH--TPLRSNFTLTA 224 (248)
T ss_dssp EECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCS--SCEEEEECC--
T ss_pred ccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCC--CCcEEEEEEEE
Confidence 000011100111 123577999999999999999999999865 34666777777
No 139
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.86 E-value=2.4e-21 Score=156.62 Aligned_cols=185 Identities=15% Similarity=0.288 Sum_probs=121.9
Q ss_pred eCCceeEEecCCcEEEEEEee---cCCCCCCceEEEEECCeeccc--------------cccccCcEE------eceeEE
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVT---SPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT------QSKDSI 168 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~---~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~------~~~~~l 168 (323)
+.+....+.+|++++|.|.+. +.+ .+.|.|++++..... ...+..++. ..+..|
T Consensus 10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 86 (268)
T 3mj6_A 10 VSSPQLRVHVGESVLMGCVVQRTEEKH---VDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86 (268)
T ss_dssp --CCEEEEETTCCEEECCBCCCSSCCC---EEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred cCCCceEEecCCcEEEEEEeecCCCCc---eEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence 355566788999999999987 445 689999996543211 111223443 233789
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE---ecCCCCcEEEEECCee
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV---VGSPPPTVEWRIGNDT 245 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~ 245 (323)
.|.+++.+|+|.|+|.+ .+..........+.|.|. + ..+....+.+|+.++|.|.+ .+.|.+.+.|++++..
T Consensus 87 ~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~l~V~--~--~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~ 161 (268)
T 3mj6_A 87 LLQDVQKADEGIYTCEI-RLKNESMVMKKPVELWVL--P--EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161 (268)
T ss_dssp EECSCCGGGCEEEEEEE-EETTCCCEEEEEEEEEEE--C--CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTT
T ss_pred EECCCCHhHCEEEEEEE-EecCCcceEEEEEEEEEe--c--cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCC
Confidence 99999999999999999 555323223334444443 2 12345678899999999999 5678899999994322
Q ss_pred eec-----------------cCC----eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 246 YFR-----------------SQG----RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 246 ~~~-----------------~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
... ... +..+. .........|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~----~~~~~~l~V 235 (268)
T 3mj6_A 162 HTEEETVLSYDSNMRSGKFQSLGRFRNRVDLT--GDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE----SRKTIVLHV 235 (268)
T ss_dssp CSSCEEEEEEETTSSSCEEECSSTTTTTEEEC--SCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEE
T ss_pred CCcceeEEEecCCCCccccccccccccceEee--ccCCCCeEEEEECcCChhhCeEEEEEEEcCCce----EEEEEEEEE
Confidence 100 001 11111 000124678999999999999999999998855 788888888
Q ss_pred cceecC
Q psy15235 305 KGKSFG 310 (323)
Q Consensus 305 ~~~~~~ 310 (323)
...++.
T Consensus 236 ~~~~p~ 241 (268)
T 3mj6_A 236 VQDEFQ 241 (268)
T ss_dssp ECC---
T ss_pred EcCCCe
Confidence 555443
No 140
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.86 E-value=6.8e-21 Score=148.58 Aligned_cols=174 Identities=14% Similarity=0.295 Sum_probs=116.8
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.|.|+|++ ..+. .......++. .....|.|.+++.+|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCccEEEeCCCcEEEEEECCCCC---CCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 45666788999999999999887 6789999853 2210 0011124554 2445899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CC
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QG 251 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~ 251 (323)
|.|+|.+ .+..+.. ......+.|.. +|.+.. +.......|+.+.|.|.+.| .|.+ .+.|+++|..+... ..
T Consensus 84 G~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 161 (213)
T 3d9a_L 84 GMYFCQQ-SNSWPYT-FGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 161 (213)
T ss_dssp EEEEEEE-CSSSSCE-ECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred EEEEEee-ecCCcce-eCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence 9999999 6653321 12233566654 555553 22333447899999999987 5665 89999999987643 11
Q ss_pred eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
........++ ....+.|.|.++..+|.|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 1111100100 012468999999999999999999998844
No 141
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.86 E-value=2.3e-20 Score=143.32 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=117.0
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~ 102 (323)
.+.+..+.+|++++|.|.+ .+.+.+.|+++|..+...... +. ......+...|.|.+++. +|.|+|.+.+..+
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 87 (194)
T 2a38_A 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-GV--QISFSDGRAKLTIPAVTKANSGRYSLKATNGSG 87 (194)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST-TC--EEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC-ce--EEEeCCCEEEEEECCCCcccCEEEEEEEEcCCc
Confidence 4567889999999999994 466799999999887664211 11 223345667788877665 9999999987665
Q ss_pred cccee-----------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeE
Q psy15235 103 MNAIT-----------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDS 167 (323)
Q Consensus 103 ~~~~~-----------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~ 167 (323)
..... +.+...+....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. .....
T Consensus 88 ~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~ 160 (194)
T 2a38_A 88 QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP---TPVVKFYRDGAEIQS----SLDFQISQEGDLYS 160 (194)
T ss_dssp EEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEES---CCEEEEEETTEECCC----SSSEEEEEETTEEE
T ss_pred eEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEec---CCeEEEEECCEECCC----CCcEEEEEcCCEEE
Confidence 43221 2222234445577899999999999887 678999999998876 44443 33447
Q ss_pred EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
|.|.++..+|+|.|+|.+ .|..+. ....+.|.|
T Consensus 161 L~i~~~~~~d~G~Y~C~a-~n~~g~--~~~~~~l~V 193 (194)
T 2a38_A 161 LLIAEAYPEDSGTYSVNA-TNSVGR--ATSTAELLV 193 (194)
T ss_dssp EEEEEECGGGCEEEEEEE-EETTEE--EEEEEEEEE
T ss_pred EEECCCChhcCeEEEEEE-EeCCCc--eEEEEEEEE
Confidence 999999999999999999 777332 334444443
No 142
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=143.85 Aligned_cols=157 Identities=15% Similarity=0.226 Sum_probs=108.4
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-eceeEEEEeeeecCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-QSKDSITIRKTTVDD 177 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-~~~~~l~i~~~~~~d 177 (323)
.|....+.+|++++|.|.+.+..+ .+.|.|++++..+.. ...+.+|+. ..+..|.|.+++.+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D 81 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMED 81 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSC--CCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGG
T ss_pred CCeEEEEEecCeEEEeccCCCccc--ccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCccc
Confidence 355566889999999999876442 469999998765421 001123443 346789999999999
Q ss_pred CeeEEEEEEcCCCCCCCCceeeeeEEEecc---eeeeeceeEEeeCC-eEEEEEEEecC-CCCcEEEEECCeeeeccCCe
Q psy15235 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKP---TAKLVETLTVIEGE-KLRLECLVVGS-PPPTVEWRIGNDTYFRSQGR 252 (323)
Q Consensus 178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~-~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~ 252 (323)
+|.|.|.+ .+..+. ....+.|.|..++ .+.... .....|. .++|.|.+.|. |.|.+.|++++..+..
T Consensus 82 ~G~Y~C~~-~~~~~~--~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~---- 153 (193)
T 2if7_A 82 TGSYRAQI-STKTSA--KLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS---- 153 (193)
T ss_dssp CEEEEEEE-ECSSCE--EEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES----
T ss_pred CceEEEEE-EecCCC--eEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC----
Confidence 99999999 665322 3346677776543 333222 1233465 89999999885 5789999999876531
Q ss_pred eeeecCCCCCCcceeEEEeecCcC-CCeEEEEEEeecccC
Q psy15235 253 IKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVATR 291 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~L~i~~v~~~-d~G~y~C~a~n~~g~ 291 (323)
...|+|.....+ |.|.|+|.|.|..|.
T Consensus 154 ------------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~ 181 (193)
T 2if7_A 154 ------------QPNLTVSWDPRISSEQDYTCIAENAVSN 181 (193)
T ss_dssp ------------SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred ------------CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence 345677654554 899999999999965
No 143
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.86 E-value=2.7e-20 Score=143.29 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=117.4
Q ss_pred EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235 26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP 101 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~ 101 (323)
..+.++.+.+|+++.|.|.+ .+.+.+.|+++|..+.... ..........+...|.|.+++. +|.|+|.+.+..
T Consensus 9 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 85 (197)
T 2j8h_A 9 EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG 85 (197)
T ss_dssp ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS---SSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC---CcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECC
Confidence 34567889999999999995 4568999999998776531 1222223345656777777655 999999998776
Q ss_pred Cccceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235 102 RMNAITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS 164 (323)
Q Consensus 102 ~~~~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~ 164 (323)
+.......+.+ .+....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. ..
T Consensus 86 g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~ 158 (197)
T 2j8h_A 86 GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQKGQDLIDN----NGHYQVIVTRS 158 (197)
T ss_dssp EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEES---CCEEEEEESSCEECS----SSSCEEEECSS
T ss_pred CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecC---CCcEEEEECCEEeec----CCCEEEEEcCC
Confidence 55322222221 11234477899999999999988 689999999988875 44443 35
Q ss_pred eeEEEEee-eecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 165 KDSITIRK-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 165 ~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
...|.|.+ +..+|+|.|+|.+ .|..+. ....+.|.|
T Consensus 159 ~~~L~i~~~~~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V 195 (197)
T 2j8h_A 159 FTSLVFPNGVERKDAGFYVVCA-KNRFGI--DQKTVELDV 195 (197)
T ss_dssp EEEEECTTCCCGGGCEEEEEEE-EETTEE--EEEEEEEEE
T ss_pred ceEEEEeCCCCcccCEeEEEEE-EeCCCc--EeEEEEEEE
Confidence 67899999 9999999999999 777433 444555554
No 144
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.86 E-value=1.5e-21 Score=162.71 Aligned_cols=177 Identities=18% Similarity=0.219 Sum_probs=126.1
Q ss_pred eeEEecCCcEEEEEEeecCCC------CCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCe-eEEEEEEcC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPP------GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG-QYSCRLIDP 188 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~------~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~ 188 (323)
..++.+|+++.|.|.+.+.++ ...+.|.|++++..+.. ..+. .....|.|.+++.+|+| .|+|.+ .+
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~----~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a-~n 111 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP----LNRR-VKNGDLWIANYTSNDSHRRYLCTV-TT 111 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE----CSTT-EETTEEEESSCCGGGGGCCEEEEE-EC
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc----cCce-eecceEEEcCCChHhCCCcEEEEE-Ee
Confidence 345788999999999988531 00579999999987654 2222 34668999999999999 999999 67
Q ss_pred CCCCCCCceeeeeEEE-ecceee-eeceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235 189 KSTNTTPLAQADFDVI-MKPTAK-LVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTAN 265 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~-~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
..+. ........+. .+|.+. ......+.+|+.+.|.|.+.|.| .+.+.|++++..+.....++... .
T Consensus 112 ~~g~--~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--------~ 181 (329)
T 3oq3_B 112 KNGD--CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--------G 181 (329)
T ss_dssp TTSC--EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--------T
T ss_pred CCCc--eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC--------C
Confidence 6332 1122222333 344332 22223356799999999999999 89999999999886444555444 5
Q ss_pred eeEEEeecCcCCCeEEEEEEeec--ccCCCCCceeEEEEEEccee
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNV--ATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~--~g~~~~~~~~~~~l~v~~~~ 308 (323)
..|.|.+++.+|+|.|+|.|.|. .|.........+.|.|...|
T Consensus 182 ~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~ 226 (329)
T 3oq3_B 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ 226 (329)
T ss_dssp TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence 78999999999999999999997 65422223334778887665
No 145
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.86 E-value=9.4e-21 Score=146.40 Aligned_cols=173 Identities=19% Similarity=0.245 Sum_probs=114.5
Q ss_pred eEEecCCcEEEEEEeecCC---CCCCceEEEEECCeeccc--------cccccCcEE---eceeEEEEeeeecCCCeeEE
Q psy15235 117 KVFEYRVPFTLKCNVTSPP---PGDDYQIVWYKGNKSITE--------ATELSGRLT---QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~---~~~~~~i~W~~~~~~~~~--------~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~ 182 (323)
..+..|++++|.|.+.+.. | .+.+.|++++..+.. ...+..|.. .....|.|.+++.+|+|.|+
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~--~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELA--QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHH--HCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEE
T ss_pred EEEEeCCCEEEecccCCCccccc--ccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEE
Confidence 4567899999999986421 1 579999999887631 111222332 24568999999999999999
Q ss_pred EEEEcCCCCCCCC---ceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 183 CRLIDPKSTNTTP---LAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 183 C~~~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
|.+ .+..+.... ...+.|.|..+ |.+... ....|+.+.|.|.+ .|+|.|.+.|+++|..+.....+...
T Consensus 82 C~~-~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~---~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~ 157 (201)
T 1dr9_A 82 CVV-LKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ 157 (201)
T ss_dssp EEE-EECCTTSCEEEEEEEEEEEEECCCCCCEEEEE---ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE
T ss_pred EEE-EcCCCCccccccccEEEEEEcCCCCCCceEec---cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEe
Confidence 999 665333222 35666666654 333221 12458899999999 59999999999999887644333322
Q ss_pred ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
. ..++ ......+..+..+|.|.|+|.|.|..|. .+..+.+
T Consensus 158 ~--~~~~-~~~~~~~~~v~~~d~g~Y~C~a~n~~~~----~s~~~~~ 197 (201)
T 1dr9_A 158 D--PETE-LYAVSSKLDFNMTTNHSFMCLIKYGHLR----VNQTFNW 197 (201)
T ss_dssp C--TTTC-CEEEEEEEEEETTSCEEEEEEEEETTCC----EEEEEEE
T ss_pred c--CCCc-EEEEEEEEEEEecCCCEEEEEEecCcce----eeeEEec
Confidence 2 1111 1122234456678999999999999965 5555544
No 146
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.86 E-value=7.9e-21 Score=148.28 Aligned_cols=174 Identities=21% Similarity=0.367 Sum_probs=118.9
Q ss_pred CCceeEEecCCcEEEEEEeecC------CCCCCceEEEEECCeec------cc-------cccccCcEE------eceeE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSP------PPGDDYQIVWYKGNKSI------TE-------ATELSGRLT------QSKDS 167 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~------~~~~~~~i~W~~~~~~~------~~-------~~~~~~~~~------~~~~~ 167 (323)
.|....+.+|++++|.|.+.+. .+ .+.+.|+|++... .. .....+|+. .....
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSP--PLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCC--CEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCC--ceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 4556678899999999998764 12 5799999986521 10 012234554 12457
Q ss_pred EEEeeeecCCCeeEEEEEEcCCCCCC--CCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecC----CCCcEE
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPKSTNT--TPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGS----PPPTVE 238 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~----p~~~~~ 238 (323)
|.|.+++.+|+|.|.|.+ .+..+.. .....+.|.|.. +|.+..+. .+.+|+.++|.|.+.+. |.|.+.
T Consensus 84 L~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~ 160 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRV-ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFS 160 (214)
T ss_dssp EEECSCCGGGCEEEEEEE-EETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred EEEccCCHhhCceEEEEE-EcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence 999999999999999999 5542111 123456677766 34554432 36789999999999764 788999
Q ss_pred EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|++++..... .. ....+.|+|..+..+|.|.|+|.|.|..+. .+.+..+.|.|
T Consensus 161 W~~~~~~~~~--~~---------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~--~~~~~~v~l~V 213 (214)
T 2zg1_A 161 WTGNALSPLD--PE---------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQ--VTTERTVQLNV 213 (214)
T ss_dssp EESSTTSSSC--SS---------CCCSSEEEECCCTTCCSCEEEEEEECC------CCEEEEECCC
T ss_pred EeCCCCccCC--CC---------ceeEEEEEEecccHHcCcEEEEEEEeCCCC--cceEEEEEEEe
Confidence 9998865321 11 114688999999999999999999998754 44666776655
No 147
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=2.9e-22 Score=167.35 Aligned_cols=178 Identities=21% Similarity=0.323 Sum_probs=68.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
.+....+.+|+.++|.|.+.+.+| .+.+.|+++|..+.. ..++......|.|.+++.+|+|.|+|.+ .+. +
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p--~~~v~W~k~g~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~-~- 84 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGP--MGPTVWVKDGTGLVP----SERVLVGPQRLQVLNASHEDSGAYSCRQ-RLT-Q- 84 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCC--CcceEEEECCeeCCC----cccEEeccceEEEeecccccCEEEEEEE-EeC-C-
Confidence 355566788999999999998754 579999999988866 5555545678999999999999999999 665 2
Q ss_pred CCCceeeeeEEEec----------------------ceeeee-----ceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235 193 TTPLAQADFDVIMK----------------------PTAKLV-----ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245 (323)
Q Consensus 193 ~~~~~~~~l~v~~~----------------------p~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~ 245 (323)
.....+.|.|... |.+..+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus 85 -~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~ 163 (334)
T 1ry7_B 85 -RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163 (334)
T ss_dssp -----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC
T ss_pred -eEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE
Confidence 3444555666543 222211 135678899999999999999999999999988
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
+.......... .......|.|.++..+|+|.|+|.|.|..|. ....+.|.|...+
T Consensus 164 ~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~~ 218 (334)
T 1ry7_B 164 FRGEHRIGGIK----LRHQQWSLVMESVVPSDRGNYTCVVENKFGS----IRQTYTLDVLERS 218 (334)
T ss_dssp CCTTSSTTCCC----CCTTTTEEEECSCCGGGCCCEEEEEEETTEE----EEEEEEEEEECCC
T ss_pred Cccccccccee----cccceEEEEECCCCcccCEEEEEEEEeCCCC----EEEEEEEEEecCC
Confidence 76432211111 1113578999999999999999999999965 6777888887643
No 148
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.86 E-value=2e-20 Score=154.99 Aligned_cols=185 Identities=18% Similarity=0.158 Sum_probs=127.1
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+.. ..........|.|.+++.+|+|.|+|.+
T Consensus 24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~----~~~~W~k~g~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 93 (316)
T 3vh8_G 24 KPFLSAWPS-AVVPRGGHVTLRCHYRHRF----NNFMLYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTCRG- 93 (316)
T ss_dssp CCEEEEESC-SEEETTSCEEEEEEBTTBC----CSEEEEESSCSSSC----HHHHCCBSSCEEECSCCGGGCEEEEEEE-
T ss_pred CCEeeccCC-CccCCCCCEEEEEEccCCC----ceEEEEeCCCccce----eecCCcceEEEEECCCCcccCeEEEEEE-
Confidence 344555555 4577999999999998864 58999999987643 1111134678999999999999999999
Q ss_pred cCCC---CCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 187 DPKS---TNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 187 ~~~~---~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.+.. .....+..+.|.|.. +|.+...+...+.+|+.++|.|.+. .+++.+.|++++..+..........
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~---- 168 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIH---- 168 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEE----
T ss_pred EcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeec----
Confidence 5532 122344556666654 4556554445588999999999995 4567899999987664221111111
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG 306 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~ 306 (323)
.......|.|.+++.+|+|.|+|.|.|..|.. .......+.|.|.+
T Consensus 169 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~ 215 (316)
T 3vh8_G 169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215 (316)
T ss_dssp TTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred CCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence 01136789999999999999999999998641 11224556666654
No 149
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.85 E-value=9.8e-20 Score=141.88 Aligned_cols=172 Identities=19% Similarity=0.267 Sum_probs=118.4
Q ss_pred EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeecc
Q psy15235 26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLFI 100 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~~ 100 (323)
..+.+..+.+|+++.|.|.+ .+.+.+.|+++|..+... ..............|.|.++ .|+|.|+|.+.+.
T Consensus 11 ~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~ 86 (212)
T 2yd6_A 11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ----RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86 (212)
T ss_dssp ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCT----TEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEET
T ss_pred eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC----ceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcC
Confidence 34567889999999999994 467899999999887653 22222222234566788776 3499999999887
Q ss_pred CCccceee---------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---
Q psy15235 101 PRMNAITG---------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--- 162 (323)
Q Consensus 101 ~~~~~~~~---------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--- 162 (323)
.+...... .+...+....+..|+.+.|.|.+.+.| .+.+.|++++..+.... ...++.
T Consensus 87 ~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~v~W~~~g~~l~~~~-~~~~~~~~~ 162 (212)
T 2yd6_A 87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPVDTSN-NNGRIKQLR 162 (212)
T ss_dssp TEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEEC-------CCEEEEE
T ss_pred CCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCC---CCeEEEEECCccccCcC-CCceEEEEe
Confidence 65532222 222234445577899999999999988 68999999999886511 112332
Q ss_pred -eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 163 -QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 163 -~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
.....|.|.++..+|+|.|+|.| .|..+. ..+..+.|.|...+
T Consensus 163 ~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~G~-~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 163 SESIGALQIEQSEESDQGKYECVA-TNSAGT-RYSAPANLYVRGTK 206 (212)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEE-EETTEE-EECCCEEEEEEC--
T ss_pred cCCeEEEEEcCCCcccCEEEEEEE-ECCCCc-cccccccEEEEecc
Confidence 33588999999999999999999 777543 34455666666544
No 150
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.85 E-value=2e-20 Score=157.11 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=127.8
Q ss_pred ceeEEecCCcEEEEEEeecCCC--------CCCceEEEEECCeecc----cc-ccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPP--------GDDYQIVWYKGNKSIT----EA-TELSGRLTQSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~--------~~~~~i~W~~~~~~~~----~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y 181 (323)
....+.+|+++.|.|.+.+.+. ...+.|.|++++.... .. .....++......|.|.+++.+|+|.|
T Consensus 15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 94 (349)
T 4dep_C 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNY 94 (349)
T ss_dssp CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEE
T ss_pred eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEE
Confidence 3345778999999999987541 0037999999874211 10 012344444566899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceee-----eeceeEEeeCCeEEEEEEE-----ecCCCCcEEEEECCeeeeccCC
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-----LVETLTVIEGEKLRLECLV-----VGSPPPTVEWRIGNDTYFRSQG 251 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~ 251 (323)
+|.+ .+.. ......+.|.|..+|... .+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+... .
T Consensus 95 ~C~a-~n~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~-~ 170 (349)
T 4dep_C 95 TCML-RNTT--YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-N 170 (349)
T ss_dssp EEEE-ECSS--CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC-S
T ss_pred EEEE-ecCC--ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc-c
Confidence 9999 6762 334556677777654322 2334567889999999985 67899999999999987532 2
Q ss_pred eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
++.. ....|.|.+++.+|+|.|+|.|.|..+.........+.|.|..+
T Consensus 171 ~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~ 218 (349)
T 4dep_C 171 NVIP--------EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS 218 (349)
T ss_dssp SEEE--------ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred ceee--------cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence 2222 24789999999999999999999987320011367777877664
No 151
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.85 E-value=1.5e-20 Score=144.07 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=114.7
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRM 103 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~ 103 (323)
+.++.+.+|+++.|.|.+ .+.+.+.|+++|..+... ..+ +....... .|.|.+++ |+|.|+|.+.+..+.
T Consensus 14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~--~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~ 87 (192)
T 2iep_A 14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF--DTR--YSIRENGQ--LLTILSVEDSDDGIYCCTANNGVGG 87 (192)
T ss_dssp CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTT--CTT--EEEEGGGT--EEEESSCCGGGCEEEEEEEECSSSC
T ss_pred ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcccc--Ccc--EEEcCCcc--EEEEcCCCcccCeEEEEEEEcCCCc
Confidence 455779999999999994 467799999998877542 111 11222233 45555554 499999999886554
Q ss_pred c-c--------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeee
Q psy15235 104 N-A--------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKT 173 (323)
Q Consensus 104 ~-~--------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~ 173 (323)
. . ..+.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++
T Consensus 88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~L~i~~~ 160 (192)
T 2iep_A 88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNP---KPSVSWIKGDSALRE----NSRIAVLESGSLRIHNV 160 (192)
T ss_dssp CEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEES---CCEEEEEETTEECCC----CSSEEECTTSCEEESSC
T ss_pred eeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccC---CceEEEEeCCEEccC----CCcEEEecCCcEEEecC
Confidence 2 1 112222244455677899999999999987 679999999998876 44544 44557999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
..+|+|.|+|.+ .|..+.. ....+.|.|..+|
T Consensus 161 ~~~d~G~Y~C~a-~n~~g~~-~s~~~~l~V~~pp 192 (192)
T 2iep_A 161 QKEDAGQYRCVA-KNSLGTA-YSKLVKLEVEVFA 192 (192)
T ss_dssp CGGGCEEEEEEE-EETTEEE-ECCCEEEEEEC--
T ss_pred ChhhCEEEEEEE-EcCCCcE-EEEEEEEEEEeCC
Confidence 999999999999 6664332 2345666666544
No 152
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=161.15 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=120.6
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
...+.+|+.++|.|.+.+.+| .+.+.|++++..+.. ..++. .....|.|.+++.+|+|.|+|.+ .+..+
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p--~~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~g-- 85 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAGIYEVIL-KDDRG-- 85 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCT--TCEEEEEETTEEECC----SCC-----CCEEEEETTCCSTTCSCEEEEE-ESSSC--
T ss_pred eEEECCCCeEEEEEEEcCCCC--CCEEEEEECCeEcCC----CCcEEEECCeEEEEEccCCcccCeEEEEEE-ECCCC--
Confidence 356788999999999998744 689999999998875 34433 45579999999999999999999 66632
Q ss_pred CCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEec----------CCCCcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235 194 TPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVG----------SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262 (323)
Q Consensus 194 ~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
.....+.|.|...|.+. .+....+..|+.+.|.|.+.+ .|.+.+.|++++..+... .++.... .+
T Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~--~~- 161 (317)
T 2y25_A 86 KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-DRVKTGV--TG- 161 (317)
T ss_dssp EEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC-SSEEEEE--CS-
T ss_pred cEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC-CCeEEec--cC-
Confidence 23333444444333221 222233445666666666655 688999999999887644 3333331 11
Q ss_pred CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
....|.|.++..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 162 -~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~ 199 (317)
T 2y25_A 162 -EQIWLQINEPTPNDKGKYVMELFDGKTG----HQKTVDLSGQ 199 (317)
T ss_dssp -SEEEEEEESCCGGGCEEEEEEEECSSCE----EEEEEEECHH
T ss_pred -CEEEEEECcCCcccCeeEEEEEEeCCce----EEEEEEEeee
Confidence 2467999999999999999999998855 6666666554
No 153
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.85 E-value=1e-19 Score=141.84 Aligned_cols=171 Identities=13% Similarity=0.199 Sum_probs=119.0
Q ss_pred EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeec
Q psy15235 25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLF 99 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~ 99 (323)
+..+.+..+.+|++++|.|.+ .+.+.+.|+++|..+... ...........+...|.|.++ .|+|.|+|.+.+
T Consensus 10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n 86 (212)
T 2yd1_A 10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT---QSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAEN 86 (212)
T ss_dssp EECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTT---STTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEEC
T ss_pred EcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCC---cceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEe
Confidence 345677889999999999995 466799999999887632 112222223355567777765 459999999988
Q ss_pred cCCc-cceee---------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEe
Q psy15235 100 IPRM-NAITG---------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ 163 (323)
Q Consensus 100 ~~~~-~~~~~---------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~ 163 (323)
..+. ..... .+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+... ..++..
T Consensus 87 ~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~~~---~~~~~~ 160 (212)
T 2yd1_A 87 GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP---TPNIYWIKNQTKVDMS---NPRYSL 160 (212)
T ss_dssp SSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSS---CCEEEEEETTEECCTT---STTEEE
T ss_pred CCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCC---CCeEEEEECCeEcccC---CCeEEc
Confidence 7665 22222 222233444577899999999999988 6799999999887641 233443
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK 206 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~ 206 (323)
....|.|.++..+|+|.|+|.| .|..+.. ....+.|.|...
T Consensus 161 ~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~-~s~~~~l~V~~~ 201 (212)
T 2yd1_A 161 KDGFLQIENSREEDQGKYECVA-ENSMGTE-HSKATNLYVKVR 201 (212)
T ss_dssp ETTEEEECSCCGGGCEEEEEEE-EETTEEE-ECCCEEEEEEC-
T ss_pred cCCeEEEccCChhhCEEEEEEe-ecCCCce-eEEEEEEEEEec
Confidence 4558999999999999999999 7764332 122356666653
No 154
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.85 E-value=2.4e-21 Score=160.36 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=127.2
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP 195 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 195 (323)
...+.+|+.+.|.|.+.+.++ .+.|.|++++..+........++......|.|.+++.+|+|.|+|.+ .+.. ...
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~~--g~~ 88 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEH--KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVV-RNSS--YCL 88 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCC--SSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECC-CSSS--CCC
T ss_pred EEEEcCCCcEEEEeeccCcCC--CceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEE-eCCc--eEE
Confidence 455789999999999988775 56999999986543322234555544568999999999999999999 6663 234
Q ss_pred ceeeeeEEEe-cceee----eeceeEEeeCCeEEEEEEE------ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235 196 LAQADFDVIM-KPTAK----LVETLTVIEGEKLRLECLV------VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264 (323)
Q Consensus 196 ~~~~~l~v~~-~p~~~----~~~~~~~~~g~~~~l~C~~------~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
...+.+.+.. +|.+. ......+..|+.+.|.|.+ .|+|.+.+.|++++..+.....++...
T Consensus 89 ~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~-------- 160 (315)
T 1itb_B 89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-------- 160 (315)
T ss_dssp CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE--------
T ss_pred EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec--------
Confidence 4444454433 34332 1123567889999999998 888999999999999886544444333
Q ss_pred ceeEEEeecCcCCCeEEEEEEe-ecccCCCCCceeEEEEEEc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGN-NVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~-n~~g~~~~~~~~~~~l~v~ 305 (323)
...|.|.+++.+|+|.|+|.|. |..|.. .+....+.+.+.
T Consensus 161 ~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~-~~~~~~~~~~~~ 201 (315)
T 1itb_B 161 KDRLIVMNVAEKHRGNYTCHASYTYLGKQ-YPITRVIEFITL 201 (315)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEETTEE-EEEEEEEEEEEE
T ss_pred CceEEEEeceehhCcEEEEEEEcCCCCcE-EEEEEEEEEEEe
Confidence 5689999999999999999999 777651 112445555443
No 155
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.85 E-value=4.1e-20 Score=143.80 Aligned_cols=173 Identities=16% Similarity=0.289 Sum_probs=115.2
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCCe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
|....+.+|++++|.|.+.+.+ .+.+.|+++. ..+. .......++. .....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 83 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESV---TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA 83 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCcEEEcCCCCEEEEeeCCCcc---CCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCe
Confidence 6667788999999999998877 5789999842 2220 0011234554 23458999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CCe
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QGR 252 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~~ 252 (323)
.|.|.+ .+..+.. ......|.|.. +|.+.. +....+..|+.++|.|.+.| .|++ .+.|+++|..+... ...
T Consensus 84 ~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 161 (210)
T 1lk3_L 84 IYFCQQ-SWNGPLT-FGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS 161 (210)
T ss_dssp EEEEEE-CSSSSCE-ECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE
T ss_pred EEEEEE-EcCCCce-eCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc
Confidence 999999 6653221 12233556654 455543 22223347999999999987 4554 89999999887533 111
Q ss_pred eeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 253 IKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 253 ~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.......++ ....+.|.|.++..+|+|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 162 VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 111100111 112458999999999999999999998743
No 156
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.3e-19 Score=139.29 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=115.5
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~ 102 (323)
.+.++.+.+|+.+.|.|.+ .+.+.+.|++++..+... ..+..........|.|.+++ |+|.|+|.+.+..+
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 87 (197)
T 3lcy_A 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-----RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG 87 (197)
T ss_dssp CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC-----SSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC-----ccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence 4567889999999999994 567799999999877553 11223334455567776665 49999999987665
Q ss_pred ccceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeE
Q psy15235 103 MNAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDS 167 (323)
Q Consensus 103 ~~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~ 167 (323)
.......+.+ .+....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. .....
T Consensus 88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~~~----~~~~~~~~~~~~~~ 160 (197)
T 3lcy_A 88 EVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP---VPAMTWFHGQKLLQN----SENITIENTEHYTH 160 (197)
T ss_dssp EEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEECSSEEE
T ss_pred ceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeee---CCeeEEeECCEECCC----CCceEEEEcCCEEE
Confidence 5422222211 12334567899999999999988 689999999998876 44443 23378
Q ss_pred EEEeeeec-CCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 168 ITIRKTTV-DDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 168 l~i~~~~~-~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
|.|.++.. +|+|.|+|.+ .|..+ .....+.|.|.
T Consensus 161 L~i~~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~ 195 (197)
T 3lcy_A 161 LVMKNVQRKTHAGKYKVQL-SNVFG--TVDAILDVEIQ 195 (197)
T ss_dssp EEESSCCHHHHCEEEEEEE-ECSSC--EEEEEEEEEEE
T ss_pred EEEccccchhhCceEEEEE-EcCcC--ceEEEEEEEEe
Confidence 99999985 8999999999 77743 34455555554
No 157
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.85 E-value=1.8e-20 Score=144.44 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=101.8
Q ss_pred ceEEecCCcEEEEEE-----eccCceEEEEEcCccceeec------------cCcceEEEeeeeCCeEEEEEeeccc--C
Q psy15235 30 DTEIMEGAPINISCI-----LTIFEQVKWQLNGRNINQSS------------VDSGFAATANLTEDNFKYSIHEAIL--E 90 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~-----~~~~~~v~W~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~--~ 90 (323)
++++..|++++|.|. +.|.+.++|+|+|..+.... ......+......+...|.|.+++. +
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467899999999995 34678999999876544321 0011112233446677788887755 9
Q ss_pred cceEEEeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 91 SGYVQSSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 91 G~Y~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
|.|+|.+.+..+.......+.+ .+....+.+|+.++|.|.+.|.| .|.|+|++++..+........++.
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~r~~ 158 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPEGVEPAPTAANGGVM 158 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEES---CCEEEECCC------------CCE
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCC---CCEEEEEECCeeecCcccccceEE
Confidence 9999999987766433333322 23333366799999999999988 789999987654432112234443
Q ss_pred -ece---eEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 163 -QSK---DSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 163 -~~~---~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
..+ ..+.+.++..+|+|.|+|.| .|..|
T Consensus 159 ~~~~g~l~il~i~~v~~~D~G~YtC~A-~N~~G 190 (203)
T 4fa8_A 159 KEKDGSLSVAVDLSLPKPWHLPVTCVG-KNDKE 190 (203)
T ss_dssp ECTTSCEEEEEEEEECSSCCCCEEEEE-ESSSC
T ss_pred EeCCCCEEEEEECCCCHHHCEEEEEEE-EcCCC
Confidence 222 33455789999999999999 78743
No 158
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.85 E-value=5e-20 Score=143.62 Aligned_cols=170 Identities=16% Similarity=0.271 Sum_probs=114.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..... ......++. .....|.|.+++.+|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3nl4_L 7 TPASVSEPVGGTVTIKCQASQSI---SSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECADA 83 (213)
T ss_dssp ECSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCeEEEcCCCCEEEEEEecCCC---CceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHHC
Confidence 45666788999999999999986 7899999842 21110 001134444 3456899999999999
Q ss_pred eeEEEEEEcCCCCCC-CCceeeeeEEE---ecceeee-eceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccC-C
Q psy15235 179 GQYSCRLIDPKSTNT-TPLAQADFDVI---MKPTAKL-VETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQ-G 251 (323)
Q Consensus 179 G~y~C~~~~~~~~~~-~~~~~~~l~v~---~~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~-~ 251 (323)
|.|+|.+ .+..+.. .......+.|. .+|.+.. +....+.+|+.++|.|.+.| .|.+.+.|++++..+.... .
T Consensus 84 G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~ 162 (213)
T 3nl4_L 84 ATYYCQS-TYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIEN 162 (213)
T ss_dssp EEEEEEE-CCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEEE
T ss_pred EEEEEec-CCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCeec
Confidence 9999999 6653210 12333445553 3455543 22334556999999999988 8989999999998875321 1
Q ss_pred eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEe
Q psy15235 252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGN 286 (323)
Q Consensus 252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~ 286 (323)
.........+ ....+.|+|.++..+|.|.|+|.|.
T Consensus 163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 163 SKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred ccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 1111100111 1134779999999999999999999
No 159
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.85 E-value=1.2e-20 Score=147.62 Aligned_cols=172 Identities=18% Similarity=0.333 Sum_probs=112.4
Q ss_pred eeEEecCCcEEEEEEeecC-CCCCCceEEEEECC--eec---c---------ccccccCcEE----eceeEEEEeeeecC
Q psy15235 116 YKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGN--KSI---T---------EATELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~--~~~---~---------~~~~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
...+.+|++++|.|.+.+. + .+.+.|+|.. ... . ......+|+. .....|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 85 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHS---TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE 85 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGT---TCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGG
T ss_pred cEEECCCCcEEEEEECCCCCC---CcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcc
Confidence 6668899999999999987 6 6899999832 110 0 0011223443 34567999999999
Q ss_pred CCeeEEEEEEcCCCC---CCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeee
Q psy15235 177 DAGQYSCRLIDPKST---NTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTY 246 (323)
Q Consensus 177 d~G~y~C~~~~~~~~---~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~ 246 (323)
|+|.|.|.+ .+..+ .........|.|. .+|.+.. +.......|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus 86 D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l 164 (218)
T 3s96_B 86 DEAIYICGV-GDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPI 164 (218)
T ss_dssp GCEEEEEEE-EEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred cCEEEEEEE-ecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEEC
Confidence 999999999 55532 1123345567776 3455543 33334456789999999987 5766 89999999887
Q ss_pred eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...................+.|.|.....+|.|.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 209 (218)
T 3s96_B 165 TQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT 209 (218)
T ss_dssp --------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred cCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence 542211111100000012356889999999999999999999844
No 160
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.84 E-value=1.5e-19 Score=145.00 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=117.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---c----------cccccCcEE------eceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---E----------ATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~----------~~~~~~~~~------~~~~~l~i~ 171 (323)
.|....+.+|++++|.|.+.+.+.. .+.+.|+|+ +..+. . ......|+. .....|.|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 6 QSGAELVKPGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCCCeeecCCCcEEEEEEeccccCC-CceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 3455678899999999999876411 468999994 22211 0 011235554 124689999
Q ss_pred eeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCC-----cEEEEE-
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPP-----TVEWRI- 241 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-----~~~W~~- 241 (323)
+++.+|+|.|.|.+ .+..+. ........|.|..+|.+. .+....+.+|++++|.|.+.+.|++ .+.|++
T Consensus 85 ~v~~~DsG~Y~C~~-~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 85 SLTSEDSAVYYCAR-YDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp SCCGGGCEEEEEEE-CCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred cCChhhCEEEEEEE-eeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 99999999999999 666331 112234567777666554 3445678999999999999988765 899999
Q ss_pred -CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 242 -GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 242 -~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
++..+.. ...++.... .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 219 (256)
T 1nqb_A 164 KPGQSPKLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRVEAEDLGVYYCFQGSHV 219 (256)
T ss_dssp CTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CCCCCcEEEEEEeCCCCCccCCcEEEEc----cCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 5554310 112333221 0135689999999999999999999854
No 161
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.84 E-value=1.2e-19 Score=138.67 Aligned_cols=166 Identities=16% Similarity=0.209 Sum_probs=112.0
Q ss_pred EeeceEEecCCcEEEEEEecc-CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCILTI-FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~ 102 (323)
.+.+..+.+|+++.|.|.+.+ +..+.|++ +|..+... ..+..........|.|.++.. +|.|+|.+.+..+
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~p~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 82 (189)
T 2v44_A 8 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 82 (189)
T ss_dssp SCSEEEEETTCCEEEEEEEEECCSEEEEECTTSCBCCCC-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred cCCceEEecCCcEEEEEEeecCCeeEEEEeCCCCccCCC-----ceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCC
Confidence 346678999999999999432 23899999 66666543 122233345556777777654 9999999998765
Q ss_pred cc-ceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEee
Q psy15235 103 MN-AITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRK 172 (323)
Q Consensus 103 ~~-~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~ 172 (323)
.. .....+.+ .+....+..|+.++|.|.+.+.| .+.+.|++++..+.. ....++. .....|.|.+
T Consensus 83 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~ 157 (189)
T 2v44_A 83 QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTT--ISDNRFAMLANNNLQILN 157 (189)
T ss_dssp CEEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSS---CCEEEEEEEC--CEE--CCCTTEEECTTSCEEETT
T ss_pred CcEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCC---CCcEEEEECCcEEec--cCCCCEEEecCCcEEEEE
Confidence 43 11222221 33344577899999999999888 679999999987753 1134444 4456899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
+..+|+|.|+|.+ .|..+.......+.+.|
T Consensus 158 v~~~d~G~Y~C~a-~n~~~~~~~~~~~~v~V 187 (189)
T 2v44_A 158 INKSDEGIYRCEG-RVEARGEIDFRDIIVIV 187 (189)
T ss_dssp CCGGGCEEEEEEE-EETTTTEEEEEEEEEEE
T ss_pred cCcccCeEEEEEE-EccccCceeeeeEEEEE
Confidence 9999999999999 67643433333444333
No 162
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.84 E-value=1.9e-19 Score=137.68 Aligned_cols=163 Identities=16% Similarity=0.282 Sum_probs=112.4
Q ss_pred ceEEEeeceEEec-CCcEEEEEEe--ccC--ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEE
Q psy15235 23 GKITYFGDTEIME-GAPINISCIL--TIF--EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQ 95 (323)
Q Consensus 23 ~~i~~~~~~~v~~-G~~v~L~C~~--~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C 95 (323)
+.|..+....+.+ |+++.|.|.+ .+. +.+.|+++|..+...... .....|.|.+++. +|.|+|
T Consensus 4 P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~----------~~~~~L~i~~~~~~d~G~Y~C 73 (190)
T 2wv3_A 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN----------ASNMEYRINKPRAEDSGEYHC 73 (190)
T ss_dssp CEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC----------CSEEEEEESSCCGGGCEEEEE
T ss_pred CcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE----------eccEEEEEecCCcccCEEEEE
Confidence 4455566677777 9999999994 344 789999999877654111 1345666666654 999999
Q ss_pred EeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccccccccCcEE---
Q psy15235 96 SSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITEATELSGRLT--- 162 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~~~~~~~~~~--- 162 (323)
.+.+. +.......+.+ .+....+..|+.+.|.|.+.+.| .+.+.|++ ++..+... ....++.
T Consensus 74 ~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~g~~~~~~-~~~~~~~~~~ 148 (190)
T 2wv3_A 74 VYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP---HPEWMWRKKENGVFEEIS-NSSGRFFIIN 148 (190)
T ss_dssp EEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSS---CCEEEEEEEETTEEEECC-CTTSCEEEEE
T ss_pred EEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccC---CCceEEEEcCCCceeeee-cCCCeEEEec
Confidence 99887 44322222222 33344578899999999999988 68999999 67665421 1134443
Q ss_pred -eceeEEEEeeee-cCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 163 -QSKDSITIRKTT-VDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 163 -~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
.....|.|.++. .+|+|.|+|.+ .|..+. ....+.|.|
T Consensus 149 ~~~~~~L~i~~~~~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V 188 (190)
T 2wv3_A 149 KENYTELNIVNLQITEDPGEYECNA-TNSIGS--ASVSTVLRV 188 (190)
T ss_dssp CSSEEEEEECSCCTTTSCEEEEEEE-ECSSCE--EEEEEEEEE
T ss_pred CCCeeEEEEEeccccCCCEEEEEEE-EecCCc--ceeEEEEEE
Confidence 233589999999 79999999999 777433 444444444
No 163
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.84 E-value=1.1e-19 Score=139.16 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=110.7
Q ss_pred EEeeceEEecCCcEEEEEEec--c-CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235 26 TYFGDTEIMEGAPINISCILT--I-FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF 99 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~--~-~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~ 99 (323)
..+.+..+.+|++++|.|.+. + .+.+.|++ +|..+... ...............|.|.+++. +|.|+|.+.+
T Consensus 7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (191)
T 1epf_A 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83 (191)
T ss_dssp EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCB---SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred ecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCC---CCeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence 355678899999999999954 3 57999999 77776643 12222222335566777777655 9999999988
Q ss_pred cCC-ccceeeeee--------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235 100 IPR-MNAITGNYD--------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT 169 (323)
Q Consensus 100 ~~~-~~~~~~~~~--------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~ 169 (323)
..+ .......+. ..+....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ....++. ..+..|.
T Consensus 84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~ 158 (191)
T 1epf_A 84 EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVIL--KKDVRFIVLSNNYLQ 158 (191)
T ss_dssp TTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSS---CCEEEEEETTEEGGG--GCCTTEEECTTSCEE
T ss_pred CCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCC---CCEEEEEECCEEeec--cCCceEEEecCCeEE
Confidence 763 222222222 234444577899999999999888 689999999988864 1123443 4455899
Q ss_pred EeeeecCCCeeEEEEEEcCC
Q psy15235 170 IRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.++..+|+|.|+|.| .|.
T Consensus 159 i~~~~~~d~G~Y~C~a-~n~ 177 (191)
T 1epf_A 159 IRGIKKTDEGTYRCEG-RIL 177 (191)
T ss_dssp ETTCCGGGCEEEEEEE-EEG
T ss_pred ECCCChhhCEEEEEEE-EEe
Confidence 9999999999999999 666
No 164
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.9e-19 Score=148.71 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=119.8
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
...+.+|+.+.|.|......| .+.+.|++++..+.. ..++. .....|.|.+++.+|+|.|+|.+ .+..+
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p--~~~v~W~k~~~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~-~n~~g 82 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTP--KSEFSWSKDYVSTED----SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDV-TDTDG 82 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCT--TCCEEEEETTEECTT----CTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-SSSCC
T ss_pred eEEEecCCeEEEEEEEeCCCC--CcEEEEEECCEECCC----CCCEEEEEeCCEEEEEECcCCccCCEEEEEEE-EeCCC
Confidence 344778999999998864333 689999999999876 45554 34479999999999999999999 77643
Q ss_pred CCCCceeeeeEEEe------------cceee-ee-ceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeee
Q psy15235 192 NTTPLAQADFDVIM------------KPTAK-LV-ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLS 256 (323)
Q Consensus 192 ~~~~~~~~~l~v~~------------~p~~~-~~-~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~ 256 (323)
. ..++.+.|.. +|.+. .+ ....+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus 83 ~---~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~-~~~~~~ 158 (312)
T 2y23_A 83 I---ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMH 158 (312)
T ss_dssp C---CEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS-SSCEEE
T ss_pred c---EEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC-CcEEEE
Confidence 2 2244555542 44333 22 266788999999999998 8899999999999988654 334333
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
... .....+|.|.+++.+|+|.|+|.|.|..
T Consensus 159 ~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 189 (312)
T 2y23_A 159 IDR--NTGIIEMFMEKLQDEDEGTYTFQLQDGK 189 (312)
T ss_dssp EET--TTTEEEEEESCCCGGGCEEEEEEEESSS
T ss_pred Ecc--CCCEEEEEEccCCcccCEeEEEEEEeCC
Confidence 111 1134679999999999999999998654
No 165
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.84 E-value=2.6e-20 Score=146.15 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=118.2
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc------------cccccCcEE-----------eceeEEEEee
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------------ATELSGRLT-----------QSKDSITIRK 172 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~------------~~~~~~~~~-----------~~~~~l~i~~ 172 (323)
...+..|++++|.|.+.+.++.....|.|+|++..+.. ......+.. ..+.+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 34567899999999998866321235899997654321 000111111 2456799999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~ 250 (323)
++.+|+|.|+|.+ .+..+. .......+.+..+|... .+.......++...+.|.+ .+.|++.+.|++++.......
T Consensus 90 v~~~D~G~Y~C~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~ 167 (225)
T 4fmk_A 90 LRVEDEGNYTCEF-ATFPNG-TRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT 167 (225)
T ss_dssp CCGGGCEEEEEEE-EEETTE-EEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred CCHHHCcceEEEE-EeCCCc-ceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence 9999999999999 554222 22333344444444433 3334455667788888877 567888999999876654221
Q ss_pred CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
. .... ........+.|.|.++..+|+|.|+|.|.|..|. ......+.|.|...
T Consensus 168 ~-~~~~-~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~--~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 168 Q-EPGI-QAGTVTIISRYSLVPVGRADGVKVTCRVEHESFE--EPILLPVTLSVRYH 220 (225)
T ss_dssp E-EECS-STTCEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCBTTC
T ss_pred c-eEEe-cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCC--eEEEEEEEEEEEEC
Confidence 1 1111 0111113467999999999999999999999876 34556677766543
No 166
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=155.01 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=120.0
Q ss_pred eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-----cccccCcEE---------eceeEEEEeeeecCC
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLT---------QSKDSITIRKTTVDD 177 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~~---------~~~~~l~i~~~~~~d 177 (323)
..|....+.+|++++|.|.+.+..| .+.|.|++++..... ......++. .....|.|.+++.+|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D 85 (327)
T 2wng_A 8 QPDKSVSVAAGESAILHCTVTSLIP--VGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPAD 85 (327)
T ss_dssp CCCSEEEEETTSCEEECCEESCCCS--CCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGG
T ss_pred cCCCceEEecCCcEEEEEEccCcCC--CceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcccc
Confidence 3566777899999999999998733 679999998764321 000112333 335679999999999
Q ss_pred CeeEEEEEEcCCCCCC---CCceeeeeEEEecc---eeeeeceeEEeeCCeEEEEEEEecCCCC--cEEEEECCeeeecc
Q psy15235 178 AGQYSCRLIDPKSTNT---TPLAQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRS 249 (323)
Q Consensus 178 ~G~y~C~~~~~~~~~~---~~~~~~~l~v~~~p---~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~ 249 (323)
+|.|+|.+ .+..+.. .......|.|..+| .+. .+...+.+|+.+.|.|.+.|.|++ .+.|+++|..+...
T Consensus 86 ~G~Y~C~a-~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~ 163 (327)
T 2wng_A 86 AGTYYCVK-FRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF 163 (327)
T ss_dssp CEEEEEEE-EESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred CeEEEEEe-ecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc
Confidence 99999999 5653221 11234567776644 333 234567889999999999988765 89999999887643
Q ss_pred CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
................+.|.|.....+|.|.|+|.|.|..|.
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 164 QTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp EEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred ccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 322221100001123457888888877889999999998864
No 167
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.84 E-value=9.3e-20 Score=140.97 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=108.8
Q ss_pred ceEEE-eeceEEecCCcEEEEEEecc--Cc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEee
Q psy15235 23 GKITY-FGDTEIMEGAPINISCILTI--FE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSL 98 (323)
Q Consensus 23 ~~i~~-~~~~~v~~G~~v~L~C~~~~--~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~ 98 (323)
..+.. +....+.+|++++|.|.+.+ .+ .+.|+++|..+... ...+.|......|+|.|+|.+.
T Consensus 8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-------------~~~L~i~~v~~~D~G~Y~C~a~ 74 (204)
T 3sgj_C 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------------ASSYFIDAATVDDSGEYRCQTQ 74 (204)
T ss_dssp CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-------------SSEEEESSCCGGGCEEEEEEET
T ss_pred CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-------------ccEEEEecccccCCEEEEEEeC
Confidence 34443 34478999999999999553 34 49999999877654 2333333334455999999998
Q ss_pred ccCCccceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeee
Q psy15235 99 FIPRMNAITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKT 173 (323)
Q Consensus 99 ~~~~~~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 173 (323)
+..........+.. .+....+.+|+.++|.|.+.+.+| .+.+.|+++|..+.. ......|.|.++
T Consensus 75 n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~~~~--------~~~~~~L~i~~v 144 (204)
T 3sgj_C 75 LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKGRKY--------FHHNSDFYIPKA 144 (204)
T ss_dssp TSBCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCC--CEEEEEEETTEEEEE--------EEECCCEEESSC
T ss_pred CCcccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCC--CceEEEEECCcEeec--------ccCCceEEECcC
Confidence 75444433222221 112245678999999999977654 689999999988743 134568999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK 206 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~ 206 (323)
..+|+|.|+|.+ .|.. ....+..+.|.|..+
T Consensus 145 ~~~D~G~Y~C~a-~n~~-~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 145 TLKDSGSYFCRG-LVGS-KNVSSETVQITITQG 175 (204)
T ss_dssp CGGGCEEEEEEE-EETT-EEEECCCEEEEEEC-
T ss_pred CcccCEEEEEEE-EeCC-CceecCcEEEEEeCc
Confidence 999999999999 6632 233455666666653
No 168
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.84 E-value=1.5e-20 Score=146.44 Aligned_cols=170 Identities=17% Similarity=0.266 Sum_probs=114.2
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
...+.+|++++|.|.+. + .+.+.|+++ +..... ......++. .....|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~--~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 83 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--S---NNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVY 83 (211)
T ss_dssp EEEECTTCEEEEEEECC--C---SSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred eEEEcCCCCEEEEEEEC--C---CCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEE
Confidence 66688999999999998 4 679999994 222210 001234444 3456899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEE----ecceeeeec-eeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeee
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVI----MKPTAKLVE-TLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIK 254 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~ 254 (323)
.|.+ .+..+.........|.|. .+|.+.... ...+..|+.++|.|.+.|.+ .+.+.|+++|..+........
T Consensus 84 ~C~~-~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~ 162 (211)
T 3tv3_L 84 YCGS-LVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 162 (211)
T ss_dssp EEEE-EETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred EEEE-ecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCC
Confidence 9999 565321123445566776 456555322 33334799999999998853 468999999988753211111
Q ss_pred eecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 255 LSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 255 ~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
......+ ....+.|.|.++..+|.|.|+|.|.|..+.
T Consensus 163 ~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~ 200 (211)
T 3tv3_L 163 PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 200 (211)
T ss_dssp CEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred ceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 1100111 112467999999999999999999998844
No 169
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.84 E-value=1.2e-19 Score=144.77 Aligned_cols=169 Identities=19% Similarity=0.232 Sum_probs=113.6
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc-------------ccccccCcEE------eceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT-------------EATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~------~~~~~l~i~~~ 173 (323)
....+.+|++++|.|.+.+.++. .+.|.|+|+. .... .......|+. .....|.|.++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFS-SYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCEEEecCCcEEEEEEeccccCC-CceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 44668899999999999886521 3689999842 1110 0011234554 12467999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec---------------ceee-eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK---------------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTV 237 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~---------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~ 237 (323)
+.+|+|.|.|.+ .+..+.........|.|... +.+. .+....+.+|++++|.|.+.+.|.+.+
T Consensus 89 ~~~D~G~Y~C~~-~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v 167 (247)
T 2ghw_B 89 RAEDTAVYYCAR-DRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL 167 (247)
T ss_dssp CGGGCEEEEEEE-EETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred CHHHCEEEEEee-eccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence 999999999999 55411111223345666543 2233 334566889999999999999988899
Q ss_pred EEEE--CCeeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 238 EWRI--GNDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 238 ~W~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.|++ ++..+. ....++... . .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~ 228 (247)
T 2ghw_B 168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGS--G--SGTDFTLTISRLEPEDFAVYYCQQRSNW 228 (247)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEEE--C--SSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred EEEEECCCCCcEEEEEEeccCCCccCCCEEEe--c--CCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence 9999 554331 012333332 1 1135679999999999999999999865
No 170
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.84 E-value=2.7e-21 Score=150.71 Aligned_cols=174 Identities=17% Similarity=0.282 Sum_probs=114.9
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+.. ......++. .....|.|.+++.+|+|
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 82 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLP---KNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA 82 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGG---GSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred CCeEEEeCCCcEEEEEecCCCC---CCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCE
Confidence 5666788999999999987766 5689999853 32210 011234554 24568999999999999
Q ss_pred eEEEEEEcC-CCCCCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCC
Q psy15235 180 QYSCRLIDP-KSTNTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQG 251 (323)
Q Consensus 180 ~y~C~~~~~-~~~~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~ 251 (323)
.|+|.+ .+ ............+.|. .+|.+.. +....+.+|+.+.|.|.+.|. |+ +.+.|+++|..+.....
T Consensus 83 ~Y~C~~-~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 161 (212)
T 1nfd_E 83 AYYCLS-SYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVK 161 (212)
T ss_dssp EEEEEE-EETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCB
T ss_pred EEEEEE-EcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCee
Confidence 999999 53 2111111223445553 3455543 223334579999999999887 55 79999999988764321
Q ss_pred eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
........++....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 162 TTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred cCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 1111100001112466999999999999999999998854
No 171
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.84 E-value=4.9e-20 Score=139.32 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=109.4
Q ss_pred ceeEEecCCcEEEEEEeec--CCCCCCceEEEEE--CCeecccc------ccccCcEE-eceeEEEEeeeecCCCeeEEE
Q psy15235 115 KYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYK--GNKSITEA------TELSGRLT-QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~--~~~~~~~~i~W~~--~~~~~~~~------~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C 183 (323)
.......|++|+|.|.... .+ .+.|.|++ ++..+... ....+|+. ..+.+|.|.+++.+|+|.|+|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~---~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c 83 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDD---IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKV 83 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSS---EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEE
T ss_pred cEEEEecCCCEEEeCCcccccCc---CCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEE
Confidence 4455778999999995432 23 57999999 88766310 01245554 456689999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 184 RLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.+ .+..+.......+.|.|..+ |.+.. .+..+.|.|.+.+.|.+.+.|+++|..+. .
T Consensus 84 ~~-~n~~g~~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~----------- 143 (182)
T 1hnf_A 84 SI-YDTKGKNVLEKIFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGKHLK-L----------- 143 (182)
T ss_dssp EE-EETTSCEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECSSCSSCEEEEEESSCEEE-E-----------
T ss_pred EE-EeCCCceeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeEccCCCCCEEEEEECCEECC-C-----------
Confidence 99 66533322334566777642 33322 34479999999988999999999998872 1
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
....|.+.. ..+|.|.|+|.|.|..|. ......+..
T Consensus 144 ---~~~~i~~~~-~~~d~G~Y~C~a~N~~~~----~~s~~~~~c 179 (182)
T 1hnf_A 144 ---SQRVITHKW-TTSLSAKFKCTAGNKVSK----ESSVEPVSC 179 (182)
T ss_dssp ---ESSCEEEEC-CSCEEEEEEEEEECSSCE----EEEEEEEEE
T ss_pred ---CCcEEEEec-ccCCCcEEEEEEEeCCCC----cEEcceecC
Confidence 123344433 478999999999999965 555554433
No 172
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.84 E-value=6.2e-20 Score=143.02 Aligned_cols=175 Identities=18% Similarity=0.272 Sum_probs=113.8
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
|....+.+|++++|.|.+.+.+....+.|.|++++ ..+.. ......++. .....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 56667889999999999988662112589999853 22210 011234554 23458999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR 252 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~ 252 (323)
.|.|.+ .+..+. .......+.|. .+|.+.. +....+..|+.++|.|.+.|. |++ .+.|+++|..+......
T Consensus 87 ~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 164 (212)
T 1q0x_L 87 IYFCAL-WSNNKL-VFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET 164 (212)
T ss_dssp EEEEEE-ECSSCE-EECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred EEEEEE-ecCchh-hcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec
Confidence 999999 665321 11223455553 3555543 222233468999999999875 443 89999999887533111
Q ss_pred eeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 253 IKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 253 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.......++. ...+.|.|..+..+|.|.|+|.|.|...
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (212)
T 1q0x_L 165 TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 203 (212)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence 1111001111 1346799999999999999999999873
No 173
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=154.20 Aligned_cols=183 Identities=17% Similarity=0.228 Sum_probs=124.8
Q ss_pred EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-------------cccccCcEE-----eceeEEEEeeeecCCCe
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLT-----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~-----~~~~~l~i~~~~~~d~G 179 (323)
.+..|++++|.|.+.+.++ .+.|+|+|++..... ...+..|+. ....+|.|.+++.+|+|
T Consensus 10 tv~~G~~v~L~C~v~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 10 TAVWGKNVSLKCLIEVNET--ITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp EEETTSCEEECCBCCCSSC--EEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EEEcCCcEEEEEEecCCCC--CcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 4567999999999876553 568999996543211 111223332 23467999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~ 255 (323)
.|+|.+ .+.. .........+.+...|.+. .+.......|+.+.|.|.+ .|.|.+.+.|++++..+.......
T Consensus 88 ~Y~C~a-~n~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~-- 163 (308)
T 4fom_A 88 KYICKA-VTFP-LGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF-- 163 (308)
T ss_dssp EEEEEE-EETT-TEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC--
T ss_pred EEEEEE-eeCC-CcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee--
Confidence 999999 4431 2234455566666554332 3334445668899999987 688999999999998765321111
Q ss_pred ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
. .......+.|.|..+..+|.|.|+|.|.|..|. ......+.|.|..+|..
T Consensus 164 ~--~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~--~~~~~~~~l~V~~~P~~ 214 (308)
T 4fom_A 164 P--NETATIISQYKLFPTRFARGRRITCVVKHPALE--KDIRYSFILDIQYAPEV 214 (308)
T ss_dssp T--TSCEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCCCEEEEE
T ss_pred e--eecccccccceEEeeeecCCccEEEEEEccCCC--CceEEeEEEEEecCCee
Confidence 0 111123567999999999999999999999876 44566777777766654
No 174
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.84 E-value=8.6e-20 Score=142.29 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=115.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|.. .... . ......++. .....|.|.+++.+|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3r06_A 7 SPSSLPASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI 83 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCCEEEecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC
Confidence 45666788999999999999986 7899999832 1110 0 011234444 3456899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEE---Eecceeee-eceeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccC-C
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDV---IMKPTAKL-VETLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQ-G 251 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v---~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~-~ 251 (323)
|.|.|.+ .+..+. .......|.| ..+|.+.. +....+..|+.+.|.|.+.|.|+ +.+.|+++|..+.... .
T Consensus 84 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 84 GSYYCQQ-YYNYPW-TFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp SEEEEEE-CSSSSC-EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred EEEEEec-ccCCce-EEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 9999999 665321 2233445666 34565553 33333456888999999987654 3899999998875321 1
Q ss_pred eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.........+ ....+.|.|.....+|.|.|+|.|.|...
T Consensus 162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~ 201 (213)
T 3r06_A 162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS 201 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence 1111110111 12346788999999999999999999873
No 175
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.84 E-value=1.2e-19 Score=136.99 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=107.5
Q ss_pred CceEEE-eeceEEecCCcEEEEEEecc--Cce-EEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEE
Q psy15235 22 DGKITY-FGDTEIMEGAPINISCILTI--FEQ-VKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQ 95 (323)
Q Consensus 22 ~~~i~~-~~~~~v~~G~~v~L~C~~~~--~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C 95 (323)
.+.+.. +....+.+|++++|.|.+.. .+. +.|+++|..+... .. .|.|.++ .|+|.|+|
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~--~L~i~~~~~~d~G~Y~C 71 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------AS--SYFIDAATVNDSGEYRC 71 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------------CS--EEEESSCCGGGCEEEEE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-------------ce--EEEEeCCCcccCEEEEE
Confidence 344443 44568999999999999543 344 8999998776542 33 4555544 45999999
Q ss_pred EeeccCCccceeeeee-----eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235 96 SSLFIPRMNAITGNYD-----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 170 (323)
.+.+..........+. ..+....+.+|+.++|.|.+.+.+| .+.+.|+++|..+.. ......|.|
T Consensus 72 ~~~n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~k~g~~~~~--------~~~~~~L~i 141 (175)
T 1fnl_A 72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKDRKY--------FHHNSDFHI 141 (175)
T ss_dssp ECSSSCCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCC--CEEEEEEETTEEEEE--------EEECCCEEE
T ss_pred EeeCCcccccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCC--ceEEEEEECCeEccC--------CCCCCEEEE
Confidence 9987655443222222 1222244778999999999988774 469999999988753 124578999
Q ss_pred eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.+++.+|+|.|+|.+ .|..+ ...+..+.|.|.
T Consensus 142 ~~v~~~d~G~Y~C~a-~n~~~-~~~s~~~~l~V~ 173 (175)
T 1fnl_A 142 PKATLKDSGSYFCRG-LVGSK-NVSSETVNITIT 173 (175)
T ss_dssp SSCCGGGCEEEEEEE-EETTE-EEECCCEEEEEE
T ss_pred cccChhhCeEEEEEE-EcCCC-CccCccEEEEEe
Confidence 999999999999999 66422 223445555554
No 176
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.83 E-value=5.3e-20 Score=139.05 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=108.6
Q ss_pred EeeceEEecCCcEEEEEEecc--C-ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235 27 YFGDTEIMEGAPINISCILTI--F-EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM 103 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~--~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~ 103 (323)
.+....+.+|++++|.|.+.+ . ..+.|++++..+... ...+.|......|+|.|+|.+.+....
T Consensus 10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~~~~~s 76 (176)
T 1f2q_A 10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------------NSSLNIVNAKFEDSGEYKCQHQQVNES 76 (176)
T ss_dssp ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------------SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------------ceEEEEeccceecCEEEEEEcCCcccc
Confidence 345568999999999999543 3 369999998776543 333334334445599999999876655
Q ss_pred cceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCC
Q psy15235 104 NAITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDA 178 (323)
Q Consensus 104 ~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 178 (323)
......+.. .+....+.+|+.++|.|.+.+.+| .+.+.|+++|..+.. . .....|.|.++..+|+
T Consensus 77 ~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~----~----~~~~~L~i~~v~~~d~ 146 (176)
T 1f2q_A 77 EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEALKY----W----YENHNISITNATVEDS 146 (176)
T ss_dssp CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCC--EEEEEEEETTEECCS----C----CCSSEEEESSCCGGGC
T ss_pred ccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCC--ceEEEEEECCEEEee----e----cCCCeEEECCCCcccC
Confidence 433322221 122234678999999999965443 679999999988753 1 2356899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~ 208 (323)
|.|+|.+ .|.. ....+..+.|.|..+|.
T Consensus 147 G~Y~C~a-~n~~-~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 147 GTYYCTG-KVWQ-LDYESEPLNITVIKAPR 174 (176)
T ss_dssp EEEEEEE-EETT-EEEECCCEEEEEECSCC
T ss_pred EEEEEEE-EeCC-cceEecCEEEEEecCCC
Confidence 9999999 6642 22345567777776663
No 177
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.83 E-value=3.1e-20 Score=146.64 Aligned_cols=172 Identities=19% Similarity=0.329 Sum_probs=116.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc---------ccccccCcE-----------EeceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT---------EATELSGRL-----------TQSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~---------~~~~~~~~~-----------~~~~~~l~i~~ 172 (323)
.|....+.+|+++.|.|.+.+.++ .+.+.|++++.... ....+..++ ......|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~ 83 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE 83 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred CCCcEEEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence 455566889999999999998772 27999998654321 000011111 12234599999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc---eeee-eceeEEeeCCeE-EEEEEE-ecCCCCcEEEEECCeee
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP---TAKL-VETLTVIEGEKL-RLECLV-VGSPPPTVEWRIGNDTY 246 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---~~~~-~~~~~~~~g~~~-~l~C~~-~g~p~~~~~W~~~~~~~ 246 (323)
++.+|+|.|+|.+ .+.. .......+.|.|..+| .+.. +....+.+|+.+ .|.|.+ .+.|.|.+.|++++..+
T Consensus 84 v~~~D~G~Y~C~~-~~~~-~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~ 161 (231)
T 2pet_A 84 AQVGDERDYVCVV-RAGA-AGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161 (231)
T ss_dssp CCGGGCEEEEEEE-ECGG-GCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred cCcccCceEEEEE-EecC-CCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccC
Confidence 9999999999999 6653 1345666777777664 3332 223445688888 999999 89999999999999988
Q ss_pred eccC---CeeeeecC---CCCC--CcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 247 FRSQ---GRIKLSEH---PEKG--TANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 247 ~~~~---~~~~~~~~---~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
.... .++.+... ...+ ...+.|.|.....+|.|.|+|.|.|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 162 EVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp CCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred ccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 6544 23333210 0011 12367889866666799999999995
No 178
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.83 E-value=2e-19 Score=139.99 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=111.8
Q ss_pred ecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCccceee
Q psy15235 34 MEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNAITG 108 (323)
Q Consensus 34 ~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~~~~ 108 (323)
.+|+.+.|.|.+. +.+.++|+++|..+... ..+..........|.|.+++. +|.|+|.+.+..+......
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~ 89 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCC-----SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCC-----CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence 4777888888844 46899999999887764 112233445566677777654 9999999998665543222
Q ss_pred eee-----------------------------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235 109 NYD-----------------------------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG 159 (323)
Q Consensus 109 ~~~-----------------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~ 159 (323)
.+. ..+....+..|+.+.|.|.+.+.| .+.+.|++++..+.. ..
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~----~~ 162 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP---PPEVSWLKNEKALAQ----TD 162 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSS---CCEEEEEETTEEECC----CS
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCC---CceEEEEECCeECcc----CC
Confidence 221 134455678899999999999988 789999999998876 44
Q ss_pred cEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 160 RLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 160 ~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
++. .....|.|.+++.+|+|.|+|.| .|..+ .....+.|.|.
T Consensus 163 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~g--~~~~~~~l~V~ 209 (212)
T 2r15_A 163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVV-KNKYG--SETSDFTVSVF 209 (212)
T ss_dssp SEEEEEETTTEEEEEESSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEE
T ss_pred CEEEEEcCCCEEEEEEcCcchHHCeEEEEEE-EcCCC--cEEEEEEEEEE
Confidence 444 22358999999999999999999 77743 34555555554
No 179
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.83 E-value=2.6e-19 Score=145.30 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=113.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE-----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++. .+.. ......++. .....|.|.+++.+|+
T Consensus 18 ~p~~~~v~~G~~v~L~C~~~~~p---~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 94 (276)
T 3auv_A 18 SPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF 94 (276)
T ss_dssp ECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCCeEEEcCCCCEEEEeEcCCCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhC
Confidence 45666788999999999998877 67999998542 1110 001234554 2345899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecc---------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEEE
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKP---------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWRI 241 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~ 241 (323)
|.|.|.+ .+..+. .......|.|...| .+..+....+.+|++++|.|.+.+.| .+.+.|++
T Consensus 95 G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 172 (276)
T 3auv_A 95 ATYYCQQ-HYTTPP-TFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR 172 (276)
T ss_dssp EEEEEEE-CSSSSC-CCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred EEEEEEE-ecCCcc-cccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence 9999999 665322 12223455555432 23344567788999999999999876 47899999
Q ss_pred CC--eeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 242 GN--DTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 242 ~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
++ .... ....++.+... .......|+|.+++.+|+|.|+|.|.|.
T Consensus 173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISAD--TSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cCCCCCcEEEEEEeccCCccccccccCCcEEEEec--CCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 63 2110 01234443310 0112458999999999999999999998
No 180
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=142.06 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=112.8
Q ss_pred EeeceEEecCCcEEEEEE---eccC-ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeecc
Q psy15235 27 YFGDTEIMEGAPINISCI---LTIF-EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFI 100 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~---~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~ 100 (323)
.+.++.+.+|+++.|.|. ..+. +.++|++++..+.... .... ......+ .|.|.++ .|+|.|+|.+.+.
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~~ 88 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITM-DKRR--FVSQTNG--NLYIANVEASDKGNYSCFVSSP 88 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCC-SSSE--EECTTTC--CEEESSCCGGGCEEEEEEEEEG
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeee-CCCe--EEEcCCC--eEEECcCCcccCeEEEEEEEec
Confidence 346678999999999999 4566 8999999998775421 1111 1111233 3555554 4599999999875
Q ss_pred CCccc------------------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 101 PRMNA------------------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 101 ~~~~~------------------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
.+... ..+.+...+....+..|+.++|.|.+.+.| .+.+.|++++..+.. ..++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~----~~~~~ 161 (201)
T 3s97_C 89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP---VPDIRWRKVLEPMPS----TAEIS 161 (201)
T ss_dssp GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEES---CCEEEEEETTBCCCT----TCEEE
T ss_pred CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCC---CCceEEEeCCCcCCC----ceeec
Confidence 43321 112233333345577899999999999987 689999999987765 44444
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.....|.|.++..+|+|.|+|.+ .|..+ .....+.|.|.
T Consensus 162 ~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~ 200 (201)
T 3s97_C 162 TSGAVLKIFNIQLEDEGIYECEA-ENIRG--KDKHQARIYVQ 200 (201)
T ss_dssp TTTTEEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEE
T ss_pred CCCCEEEEccCChhhCEEEEEEE-EecCC--ceeeeEEEEEe
Confidence 55678999999999999999999 77633 33445555543
No 181
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.83 E-value=1e-19 Score=142.24 Aligned_cols=176 Identities=15% Similarity=0.277 Sum_probs=112.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG 179 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G 179 (323)
|....+.+|++++|.|.+.+.++. .+.+.|+|++ ..+.. ......++. .....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 85 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIG-NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGG-GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEecCCCeEEEEEEeecCCCC-CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence 556678899999999995443311 4689999953 22110 011234554 23558999999999999
Q ss_pred eEEEEEEcCCCCCCCCceeeeeEEE---ecceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CCe
Q psy15235 180 QYSCRLIDPKSTNTTPLAQADFDVI---MKPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QGR 252 (323)
Q Consensus 180 ~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~~ 252 (323)
.|.|.+ .+..+.........|.|. .+|.+.. ++......|+.++|.|.+.| .|++ .+.|+++|..+... ...
T Consensus 86 ~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~ 164 (216)
T 2xzc_L 86 DYYCGT-WDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES 164 (216)
T ss_dssp EEEEEE-ECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred EEEEEE-EeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe
Confidence 999999 665331112223455554 3455543 22222336889999999987 4554 89999999887533 111
Q ss_pred eeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 253 IKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 253 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.......++. ...+.|.|..+..+|+|.|+|.|.|....
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 1111001110 12458999999999999999999998844
No 182
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.83 E-value=1.2e-19 Score=150.12 Aligned_cols=190 Identities=18% Similarity=0.209 Sum_probs=127.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCC--CceEEEEECCeeccc---------cccccCcEE---------eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITE---------ATELSGRLT---------QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~---------~~~~~~~~~---------~~~~~l~i~~ 172 (323)
.|....+..|++++|.|.+.+.++.. ...|.|+|++..... ......++. ..+.+|.|.+
T Consensus 6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (313)
T 4fqp_A 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (313)
T ss_dssp CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence 45555577899999999998765310 125999998754321 001122222 2346799999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~ 250 (323)
++.+|+|.|+|.+..+. .......+.|.+..+|.+. ......+..++.+.+.|.+ .+.|.+.+.|++++..+....
T Consensus 86 v~~~D~G~Y~C~v~~~~--~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~ 163 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFP--QGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS 163 (313)
T ss_dssp CCGGGCEEEEEEEECSS--SCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE
T ss_pred CChhhCEEEEEEEeecc--CcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc
Confidence 99999999999984333 2334555666666666554 3334556678889999988 578999999999988765322
Q ss_pred CeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 251 GRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
. .... ..+ ....+.|.|.....+|+|.|+|.|.|..+. ......+.|.|..+|.
T Consensus 164 ~-~~~~--~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~--~~~~~~~~l~V~~~P~ 218 (313)
T 4fqp_A 164 Q-VPGF--LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE--KPQLLTVNLTVYYPPE 218 (313)
T ss_dssp E-EECS--STTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS--SCEEEEEECCBCEEEE
T ss_pred e-eeee--cccccccceeeeecccccccCeeEEEEEEccCcC--ccceeeeecccccCCc
Confidence 1 1111 111 112467999999999999999999998866 4456666776765554
No 183
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.83 E-value=6.7e-20 Score=143.55 Aligned_cols=173 Identities=18% Similarity=0.256 Sum_probs=111.4
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.+.. .+.+.|+|+ +..+.. ...+.+|+. .....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFT-NYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCeEecCCCcEEEEEEEeCcccc-cceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 445568899999999999876411 478999996 332210 011245554 1246899999
Q ss_pred eecCCCeeEEEEEEcCCCCCC--CCceeeeeEEEec----ceee-eeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECC
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNT--TPLAQADFDVIMK----PTAK-LVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGN 243 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~~----p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~ 243 (323)
++.+|+|.|.|.+ .+..+.. .......|.|... |.+. .++...+.+|+.+.|.|.+.| +|.| .+.|++++
T Consensus 86 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 86 LKNEDMATYFCAR-GTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp CCGGGCEEEEEEE-EETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEE-eccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999 5553111 1223445666542 4443 232334668999999999988 8988 99999998
Q ss_pred eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
..+.......... .......+.|+|.... .|.|.|+|.|.|..|.
T Consensus 165 ~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~ 209 (219)
T 1c1e_H 165 LSSGVHTFPAVLQ--SDLYTLSSSVTVPSSP-RPSETVTCNVAHPASS 209 (219)
T ss_dssp BCTTEEECCCEES--SSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGT
T ss_pred cccceEecCCccc--CCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCC
Confidence 7642110000000 1011134679995444 4669999999999854
No 184
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.83 E-value=2.5e-19 Score=142.01 Aligned_cols=174 Identities=14% Similarity=0.270 Sum_probs=115.4
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. .... . ......++. .....|.|.+++.+|+
T Consensus 30 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 106 (237)
T 3sob_L 30 SPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF 106 (237)
T ss_dssp ECSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCCeEEEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence 45566788999999999999886 6899999842 1110 0 011134444 3567899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEE---ecceeee-eceeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccC-C
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAKL-VETLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQ-G 251 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~-~ 251 (323)
|.|.|.+ .+..+. .......+.|. .+|.+.. +....+..|+.++|.|.+.+. | .+.+.|+++|..+.... .
T Consensus 107 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~ 184 (237)
T 3sob_L 107 ATYYCQQ-SYTTPP-TFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 184 (237)
T ss_dssp EEEEEEE-CSSSSC-EECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred eEEEEee-ccCCce-EEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence 9999999 665321 12233355553 3455542 222334468899999999874 5 57999999998875321 1
Q ss_pred eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.........+ ....+.|.|.....+|.|.|+|.|.|....
T Consensus 185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 1111110111 123467999999999999999999999844
No 185
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.83 E-value=8.1e-20 Score=147.83 Aligned_cols=199 Identities=14% Similarity=0.201 Sum_probs=112.1
Q ss_pred ccCcceEEEeeccCCcccee--eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---cc------
Q psy15235 88 ILESGYVQSSLFIPRMNAIT--GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---EA------ 154 (323)
Q Consensus 88 ~~~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~~------ 154 (323)
.+.+.|.|.+.+..+..... ..+...+....+.+|++++|.|.+.+ + .+.+.|||. +.... ..
T Consensus 6 ~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~ 81 (270)
T 3qib_D 6 ADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-G---HPVVFWYQQNKNNEFKFLINFQNQEVL 81 (270)
T ss_dssp ----------------------CCCEEECSEEEEETTSCEEEEEECCT-T---CCEEEEEEECTTCCEEEEEEEETTEEE
T ss_pred hhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-C---CceEEEEEECCCCCcEEEEEECCCCce
Confidence 34789999998765543322 22333566677889999999999865 4 579999982 21110 00
Q ss_pred --ccccC-cEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeE
Q psy15235 155 --TELSG-RLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLT 216 (323)
Q Consensus 155 --~~~~~-~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~ 216 (323)
....+ |+. .....|.|.+++.+|+|.|.|.+ .+... .........+.|.. +|.+.+ +....
T Consensus 82 ~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~ 160 (270)
T 3qib_D 82 QQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCAS-SLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAE 160 (270)
T ss_dssp EECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEE-ESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHH
T ss_pred ecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEE-ecCCCccceEECCcEEEEEccccccccCCceEEECCCccc
Confidence 00011 443 23568999999999999999999 54311 11122334566654 454432 22223
Q ss_pred EeeCCeEEEEEEEec-CCCC-cEEEEECCeeeeccCCeee-----eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEee
Q psy15235 217 VIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIK-----LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNN 287 (323)
Q Consensus 217 ~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n 287 (323)
+..|+.++|.|.+.| .|.+ .+.|+++|..+........ .....++ ....+.|.|.....+| .|.|+|.|.|
T Consensus 161 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~ 240 (270)
T 3qib_D 161 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQF 240 (270)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEE
T ss_pred cccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEe
Confidence 445999999999988 6666 7999999988753211100 0000001 1123678898888888 9999999999
Q ss_pred cccC
Q psy15235 288 VATR 291 (323)
Q Consensus 288 ~~g~ 291 (323)
....
T Consensus 241 ~~l~ 244 (270)
T 3qib_D 241 YGLS 244 (270)
T ss_dssp CCBC
T ss_pred cCCC
Confidence 8754
No 186
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.82 E-value=1.6e-19 Score=135.44 Aligned_cols=151 Identities=14% Similarity=0.144 Sum_probs=107.3
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
...+..|++|+|.|.+.. + .+.|.|++++..+.. ...+.+|+. ..+.+|.|.+++.+|+|.|.|.+
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~---~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 79 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-P---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79 (171)
T ss_dssp EEEEETTCCEEECCCCSS-C---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred EEEEEcCCCEEEcCCCCC-C---cceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEE
Confidence 345778999999998843 4 689999998865432 012344554 35678999999999999999999
Q ss_pred EcCCCCCCCCceeeeeEEEecc---eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235 186 IDPKSTNTTPLAQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
.+..+ ...+.|.|..++ .+... .....|.|.+.+.|.|.+.|++++..+...
T Consensus 80 -~n~~~----~~~~~L~V~~~~~~p~i~~~-------~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~------------- 134 (171)
T 1ccz_A 80 -PNITD----TMKFFLYVLEMVSKPMIYWE-------CSNATLTCEVLEGTDVELKLYQGKEHLRSL------------- 134 (171)
T ss_dssp -TTCCS----CEEEEEEEECCCCCCEEEEE-------TTTTEEEEECSSCSSCEEEEEETTEEEEEE-------------
T ss_pred -eCCCC----cEEEEEEEECcCCCCEEEEe-------cCCcEEEEEeCCCCCcEEEEEECCEECcCC-------------
Confidence 76633 567777777642 33221 111379999998899999999999887532
Q ss_pred CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l 302 (323)
....|.+. ...|.|.|+|.|.|..|. ....+.|
T Consensus 135 -~~~~l~~~--~~~~~g~Y~C~a~N~~~~----~~~~~~l 167 (171)
T 1ccz_A 135 -RQKTMSYQ--WTNLRAPFKCKAVNRVSQ----ESEMEVV 167 (171)
T ss_dssp -SSSEEEEE--CSCCSSCEEEEEEETTEE----EEEEECC
T ss_pred -cceEEEEe--ccCCCceEEEEEEcccCc----ccceeEE
Confidence 12334443 367899999999999965 4554444
No 187
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.82 E-value=9.9e-20 Score=146.18 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=112.5
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc------------cccccCcEE------eceeEEEEeeeec
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE------------ATELSGRLT------QSKDSITIRKTTV 175 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~~ 175 (323)
...+.+|++++|.|.+.+.+.. .+.+.|+|+ +..+.. ......|+. .....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLT-SFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT 87 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTT-TSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred CccccCCceEEEEEEEecccCC-CccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence 3467899999999999886411 478999985 221110 011234554 1246899999999
Q ss_pred CCCeeEEEEEEcCCCC-------CCCCceeeeeEEEecc---------------eee-eeceeEEeeCCeEEEEEEEecC
Q psy15235 176 DDAGQYSCRLIDPKST-------NTTPLAQADFDVIMKP---------------TAK-LVETLTVIEGEKLRLECLVVGS 232 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~-------~~~~~~~~~l~v~~~p---------------~~~-~~~~~~~~~g~~~~l~C~~~g~ 232 (323)
+|+|.|.|.+ .+..+ .........|.|...+ .+. .+....+.+|++++|.|.+.+.
T Consensus 88 ~DsG~Y~C~a-~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 88 DDTGTYYCTR-DLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TCCEEEEEEE-ESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred ccCEEEEEEE-cccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999 66532 0011123456666532 222 2335568899999999999999
Q ss_pred CCCcEEEEE--CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 233 PPPTVEWRI--GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 233 p~~~~~W~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|.+.+.|++ ++..+.. ...++.... ......|+|.+++.+|+|.|+|.|.|..
T Consensus 167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec----CCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 888999999 5543310 012333220 0135689999999999999999999964
No 188
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=139.00 Aligned_cols=164 Identities=23% Similarity=0.351 Sum_probs=107.4
Q ss_pred EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeecc
Q psy15235 25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFI 100 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~ 100 (323)
+..+.+..+.+|+++.|.|.+ .+.+.+.|++++..+.... ..+.. . ...+. |.|.++ .|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~--~-~~~~~--L~i~~~~~~d~G~Y~C~~~~~ 79 (189)
T 2v5t_A 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-DNRFA--M-LANNN--LQILNINKSDEGIYRCEGRVE 79 (189)
T ss_dssp EECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCC-CTTEE--E-CTTSC--EEETTCCGGGCEEEEEEEEET
T ss_pred eccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceecc-CCeEE--E-ecCCC--EEEeeCCHhHCcEEEEEEEEc
Confidence 345677889999999999994 4667999999988776531 11111 1 11333 555554 4599999999876
Q ss_pred CCccce----------eeeeeeCCc--eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ecee
Q psy15235 101 PRMNAI----------TGNYDIEPK--YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKD 166 (323)
Q Consensus 101 ~~~~~~----------~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~ 166 (323)
.+.... .+.+...+. ...+..|+.+.|.|.+.+.| .+.+.|+++|..+.. ..++. ....
T Consensus 80 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p---~~~v~W~~~g~~~~~----~~~~~~~~~~~ 152 (189)
T 2v5t_A 80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP---EPAISWFRNGKLIEE----NEKYILKGSNT 152 (189)
T ss_dssp TTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEES---CCEEEEEETTEECCC----SSSEEEETTTT
T ss_pred CCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCC---CCeEEEEECCEECcC----CCcEEEecCCC
Confidence 543211 111111111 23456799999999999887 679999999998876 44443 4467
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.|.|.++..+|+|.|+|.+ .|..+. ....+.|.|.
T Consensus 153 ~L~i~~~~~~d~G~Y~C~a-~n~~g~--~~~~~~l~V~ 187 (189)
T 2v5t_A 153 ELTVRNIINSDGGPYVCRA-TNKAGE--DEKQAFLQVF 187 (189)
T ss_dssp EEEECSCCGGGCEEEEEEE-EETTEE--EEEEEEEEEE
T ss_pred EEEEcCCChhhCeeEEEEE-EeCCCc--eeEEEEEEEE
Confidence 8999999999999999999 777433 3444455443
No 189
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=142.41 Aligned_cols=172 Identities=17% Similarity=0.259 Sum_probs=113.2
Q ss_pred CCceeEEecCCcEEEEEEeecCC-CCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDD 177 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d 177 (323)
.|....+.+|++++|.|.+.+.. + .+.+.|+|+. ..... .....+++. .....|.|.+++.+|
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~~~~~~--~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 85 (256)
T 3ux9_B 8 QPPSVSGAPGQRVTISCSGSSSNIG--SNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED 85 (256)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTT--TSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred cCCcEEEcCCCcEEEEEecCCCCCC--CceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence 34456788999999999998762 2 6799999842 11110 001234544 234589999999999
Q ss_pred CeeEEEEEEcCCCC-CCCCceeeeeEEEecc---------------------eeeeeceeEEeeCCeEEEEEEEecCC--
Q psy15235 178 AGQYSCRLIDPKST-NTTPLAQADFDVIMKP---------------------TAKLVETLTVIEGEKLRLECLVVGSP-- 233 (323)
Q Consensus 178 ~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~p---------------------~~~~~~~~~~~~g~~~~l~C~~~g~p-- 233 (323)
+|.|.|.+ .+..+ .........|.|..++ .+..+....+.+|++++|.|.+.+.|
T Consensus 86 sG~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 164 (256)
T 3ux9_B 86 EADYYCQV-RDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFS 164 (256)
T ss_dssp CEEEEEEE-EETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEE-EECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccc
Confidence 99999999 55321 1122234456665543 34445556688999999999998876
Q ss_pred CCcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 234 PPTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 234 ~~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+.|+++ +..+. ....++.+... ......+|+|.+++.+|+|.|+|.|.|..
T Consensus 165 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 165 SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD--NSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec--CCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 678999986 32221 01124444321 11235679999999999999999999963
No 190
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.82 E-value=3.4e-19 Score=141.36 Aligned_cols=170 Identities=19% Similarity=0.303 Sum_probs=112.8
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-----------ATELSGRLT-----QSKDSITIRKTT 174 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~ 174 (323)
.|....+.+|++++|.|. .+.+ .+.|.|+|+ +..... ......++. .....|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~-~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 6 SPRNKVAVTGGKVTLSCN-QTNN---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp ECSEEEEETTCCEEEEEE-ECSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred CccceEEeCCCEEEEEee-cCCC---CccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455667889999999999 6655 689999995 211100 011133443 234589999999
Q ss_pred cCCCeeEEEEEEcCCCCC---CCCceeeeeEEEecc------------eee-eeceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235 175 VDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKP------------TAK-LVETLTVIEGEKLRLECLVVGSPPPTVE 238 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~~p------------~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 238 (323)
.+|+|.|.|.+ .+..+. ........|.|...+ .+. .+....+.+|++++|.|.+.+.|.+.+.
T Consensus 82 ~~DsG~Y~C~~-~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~ 160 (238)
T 2p1y_A 82 PSQTSVYFCAS-GDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP 160 (238)
T ss_dssp GGGCEEEEEEE-EC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred cccCeeEEEEE-EeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence 99999999999 665321 011123456665432 333 3456678999999999999999999999
Q ss_pred EEECCe--e---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 239 WRIGND--T---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 239 W~~~~~--~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|++++. . +. ....++.+.. +......+|+|.+++.+|+|.|+|.|.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFF--NKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEe--cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 999641 1 10 0123343321 011135789999999999999999999974
No 191
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.82 E-value=8.6e-19 Score=134.63 Aligned_cols=165 Identities=17% Similarity=0.276 Sum_probs=112.8
Q ss_pred eEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCC-------eEEEEEeeccc--Cc
Q psy15235 24 KITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTED-------NFKYSIHEAIL--ES 91 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~--~G 91 (323)
.+..+.+..+.+|++++|.|.+. +.+.+.|+++|..+.... ........... ...|.|.+++. +|
T Consensus 5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD---STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp EEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCE---EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred eccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCC---CCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 44556788899999999999955 567999999998876541 11112222111 35677776654 99
Q ss_pred ceEEEeeccCCccc---e------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcE
Q psy15235 92 GYVQSSLFIPRMNA---I------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRL 161 (323)
Q Consensus 92 ~Y~C~~~~~~~~~~---~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~ 161 (323)
.|+|.+.+..+... . .|.+...+....+.+|+.+.|.|.+.+.| .+ .+.|++++..+.. ....
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~~~~~~~----~~~~ 154 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP---EPVDLLWLQDAVPLAT----APGH 154 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSS---CCCEEEEEESSCBSSS----STTS
T ss_pred EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCC---CCCEEEEEECCEeccC----CCCc
Confidence 99999988654321 1 12222244445577899999999999988 67 9999999988865 2211
Q ss_pred EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 162 TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 162 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
.....|.|.+++ |+|.|+|.| .|..+.. .+..+.|.|
T Consensus 155 -~~~~~L~i~~~~--d~G~Y~C~a-~N~~g~~-~s~~~~l~V 191 (195)
T 2c5d_C 155 -GPQRSLHVPGLN--KTSSFSCEA-HNAKGVT-TSRTATITV 191 (195)
T ss_dssp -SCCEEEEECCCS--SCEEEEEEE-EETTEEE-ECCCEEEEE
T ss_pred -CCCCeEEEcccc--cCceEEEEE-EcCCCce-EEEEEEEEE
Confidence 356789999886 789999999 6764321 124555555
No 192
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.82 E-value=3.8e-19 Score=142.19 Aligned_cols=168 Identities=15% Similarity=0.272 Sum_probs=113.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE-----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+.. .+.. ......++. .....|.|.+++.+|+
T Consensus 10 ~p~~~~v~~G~~v~L~C~~~~~~---~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 86 (250)
T 3esu_F 10 STSSLSASLGDRVTISCRASQDI---RNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI 86 (250)
T ss_dssp SCSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred cCCEEEeeCCCcEEEEEEecccC---CceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence 56666788999999999999987 67999998531 1100 011234443 3345899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEec--------------------ceeeeeceeEEeeCCeEEEEEEEecCC--CCc
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMK--------------------PTAKLVETLTVIEGEKLRLECLVVGSP--PPT 236 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~--------------------p~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~ 236 (323)
|.|.|.+ .+..+.. ......|.|..+ +.+..+....+.+|++++|.|.+.+.| .+.
T Consensus 87 G~Y~C~~-~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 164 (250)
T 3esu_F 87 GTYFCQQ-GNTLPWT-FGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW 164 (250)
T ss_dssp EEEEEEE-CSSSSCE-ECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred EEEEEEE-eeCCCce-ECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence 9999999 6653221 222334555442 233455567788999999999998876 678
Q ss_pred EEEEEC--Ceeeec----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 237 VEWRIG--NDTYFR----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 237 ~~W~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
+.|+++ +..+.. ...++.+.. .......+|+|.+++.+|+|.|+|.|.+
T Consensus 165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTA--DKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEe--cCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 999997 433210 113333331 1111345799999999999999999998
No 193
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.2e-19 Score=138.90 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=111.2
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~ 102 (323)
.+.++.+.+|+++.|.|.+. +.+.+.|++++..+... ....|.|.++ .|+|.|+|.+.+..+
T Consensus 24 ~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~ 89 (218)
T 3k0w_A 24 NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------------NTSELIFNAVHVKDAGFYVCRVNNNFT 89 (218)
T ss_dssp CCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC--------------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred CCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC--------------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence 45678899999999999954 56799999998876553 1234555555 459999999998754
Q ss_pred cc-----cee-------------------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc
Q psy15235 103 MN-----AIT-------------------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS 158 (323)
Q Consensus 103 ~~-----~~~-------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~ 158 (323)
.. .+. +.+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+..
T Consensus 90 ~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p---~~~v~W~~~~~~~~~----- 161 (218)
T 3k0w_A 90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSP---IPHYQWFKNELPLTH----- 161 (218)
T ss_dssp CEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSS---CCEEEEEETTEECTT-----
T ss_pred CceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccC---CCeEEEEECCEECCC-----
Confidence 32 111 1222244445678899999999999887 689999999998876
Q ss_pred CcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235 159 GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209 (323)
Q Consensus 159 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~ 209 (323)
.....|.|.++..+|+|.|+|.+ .|..+. ..+..+.|.|...+.+
T Consensus 162 ----~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g~-~~s~~~~l~V~~~~~~ 206 (218)
T 3k0w_A 162 ----ETKKLYMVPYVDLEHQGTYWCHV-YNDRDS-QDSKKVEIIIDELNNL 206 (218)
T ss_dssp ----CCSSEEEESSCCGGGCEEEEEEE-ECSSCE-EECCCEEEEECC----
T ss_pred ----CCCCEEEEeecChhcCEEEEEEE-EcCCCC-ceeeeEEEEEeCCccC
Confidence 34568999999999999999999 675332 2455556666554333
No 194
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.82 E-value=2.6e-20 Score=146.17 Aligned_cols=183 Identities=17% Similarity=0.249 Sum_probs=118.5
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCC--ceEEEEECCeecccc-------ccc--cCcEE--e-------ceeEEEEeeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDD--YQIVWYKGNKSITEA-------TEL--SGRLT--Q-------SKDSITIRKTT 174 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~--~~i~W~~~~~~~~~~-------~~~--~~~~~--~-------~~~~l~i~~~~ 174 (323)
....+..|++++|.|.+.+..+... ..+.|++++...... ... .+|+. . ....|.|.+++
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~ 86 (221)
T 3eow_R 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLR 86 (221)
T ss_dssp CCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSS
T ss_pred CcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCC
Confidence 3344678999999999855332101 259999986422110 000 22332 1 36689999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeE-EEEEEEe-cCCCCcEEEEECCeeeeccCCe
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKL-RLECLVV-GSPPPTVEWRIGNDTYFRSQGR 252 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~-~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~ 252 (323)
.+|+|.|+|.+ .+.. .......+.|.|..+|.+..........|+.+ .|.|.+. +.|.|.+.|++++...... ..
T Consensus 87 ~~D~G~Y~C~~-~~~~-~~~~~~~~~L~V~~~P~~~~~~~~~~~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~-~~ 163 (221)
T 3eow_R 87 VEDEGSYTCLF-VTFP-QGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQT-SQ 163 (221)
T ss_dssp CCCCSCBEEEE-EESS-SCSCEEECCCCCCCCCEEEEEEECCCCCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCC-EE
T ss_pred hHHCeEEEEEE-EeCC-CCceEEEEEEEEEECCCceeecCCcccCCceEEEEEEECCCccCCCeeEEEeCCCCCCcc-ce
Confidence 99999999999 5542 13356677788887887663322222678888 4999986 8899999999875433211 11
Q ss_pred eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
. ...........+.|.|.++..+|.|.|+|.|.|..+. ....+.|...
T Consensus 164 ~-~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~----~~~~~~v~~~ 211 (221)
T 3eow_R 164 V-PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFE----KPQLLTVSLT 211 (221)
T ss_dssp E-CCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSS----SCEEEEECCC
T ss_pred e-ecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCC----CCeEEEEEEE
Confidence 0 0000111124578999999999999999999999854 5555554443
No 195
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.82 E-value=5.3e-19 Score=140.60 Aligned_cols=169 Identities=15% Similarity=0.249 Sum_probs=113.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eec---cc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSI---TE-----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~---~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ... .. ......|+. .....|.|.+++.+|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (242)
T 2znx_A 7 SPATLSVTPGNSVSLSCRASQSI---GNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (242)
T ss_dssp ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred cCCeEEEcCCCcEEEEEEeCCCC---CceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence 45666788999999999998877 6899999953 111 00 001234554 2356899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEecc--------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEEEC
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWRIG 242 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~ 242 (323)
|.|.|.+ .+.... .......|.|..+| .+..+....+.+|++++|.|.+.+.| .+.+.|+++
T Consensus 84 G~Y~C~~-~n~~~~-~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~ 161 (242)
T 2znx_A 84 GMYFCQQ-SNSXPY-TFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK 161 (242)
T ss_dssp EEEEEEE-CSSSSC-EECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred EEEEEeE-ecCCce-EECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence 9999999 665321 11233456666543 23344455688999999999998876 478999984
Q ss_pred C--eeee---------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 243 N--DTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 243 ~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
+ ..+. ....++.+... ......+|+|.+++.+|+|.|+|.|.|.
T Consensus 162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD--TSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CCCCCcEEEEEEecCCccccCccccCcEEEEec--CCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 2 2221 01234444311 1113568999999999999999999984
No 196
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.82 E-value=1.6e-19 Score=137.39 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=110.3
Q ss_pred ceEEecCCcEEEEEEe--ccCceEEEEEcCccceeecc----------CcceEEEeee---eCCeEEEEEeecc--cCcc
Q psy15235 30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSV----------DSGFAATANL---TEDNFKYSIHEAI--LESG 92 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~----------~~~~~~~~~~---~~~~~~l~i~~~~--~~G~ 92 (323)
.+.+.+|++++|.|.+ .+.+.+.|++++..+..... ...+ ..... ..+...|.|.+++ |+|.
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDR-ADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGG-EECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCc-cccccccccCCeEEEEEecCCHHHCEE
Confidence 4678999999999995 45579999998864322100 0011 11111 2345556666665 4999
Q ss_pred eEEEeeccCCccceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235 93 YVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172 (323)
Q Consensus 93 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 172 (323)
|+|.+.+..+...+.+.....+....+.+|+.++|.|.+.+.| .+.+.|++++..+. .....|.|.+
T Consensus 83 Y~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~~----------~~~~~L~i~~ 149 (184)
T 2ny1_B 83 YICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNI----------QGGKTLSVSQ 149 (184)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTC---CCEEEEECTTSCEE----------EESSEEEESS
T ss_pred EEEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCC---CCEEEEEeCCCccc----------cCceEEEEec
Confidence 9999987755443333322233344578899999999998877 78999999876653 3567899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
++.+|+|.|+|.+ .+. .......+.|.|...|
T Consensus 150 v~~~d~G~Y~C~a-~n~--~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 150 LELQDSGTWTCTV-LQN--QKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp CCGGGCEEEEEEE-EET--TEEEEEEEEEEEECCC
T ss_pred CCcCCCeEEEEEE-EEC--CceEEEEEEEEEEecC
Confidence 9999999999999 665 3344556666665544
No 197
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.82 E-value=8.1e-19 Score=140.80 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=118.4
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~~ 173 (323)
....+.+|++++|.|.+.+.+.. .+.+.|||.. ..+.. .....+|+. .....|.|.++
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFT-EYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CceEEcCCCCEEEEEEEeccccc-ccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 33458899999999999875421 4689999832 21110 111234554 22456999999
Q ss_pred ecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe----------------cceee-eeceeEEeeCCeEEEEEEEecCCC
Q psy15235 174 TVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM----------------KPTAK-LVETLTVIEGEKLRLECLVVGSPP 234 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~----------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~ 234 (323)
+.+|+|.|.|.+ .+... .........|.|.. +|.+. .+....+.+|++++|.|.+.+.|.
T Consensus 89 ~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 167 (256)
T 3umt_A 89 TSEDSAVYYCAR-DDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG 167 (256)
T ss_dssp CGGGCEEEEEEE-CCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred CcccCEEEEEEE-ccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence 999999999999 65411 11223345566663 34444 344577889999999999999888
Q ss_pred CcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 235 PTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 235 ~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
+.+.|+++ +..+. ....++.... .....+|+|.+++.+|+|.|+|.|.|..+.. -..-..
T Consensus 168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~---fg~gt~ 240 (256)
T 3umt_A 168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR----SGSDYSLTISSLESEDFVDYYCLQYASSPPT---FGGGTK 240 (256)
T ss_dssp TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEECSSSSCE---ECCCEE
T ss_pred cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec----CCCEEEEEECCCChhHCEEEEEEEeeCCCcE---ECCCEE
Confidence 89999984 22211 0112333221 1135679999999999999999999965331 223456
Q ss_pred EEEcceecCc
Q psy15235 302 VRVKGKSFGY 311 (323)
Q Consensus 302 l~v~~~~~~~ 311 (323)
|.|.+.++..
T Consensus 241 L~V~~~~~~~ 250 (256)
T 3umt_A 241 LEIKRAAALE 250 (256)
T ss_dssp EEEC------
T ss_pred EEEECCCccc
Confidence 6676665543
No 198
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.82 E-value=3.6e-19 Score=141.94 Aligned_cols=173 Identities=12% Similarity=0.280 Sum_probs=113.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----------------CCeeccccccccCcEE-----eceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----------------GNKSITEATELSGRLT-----QSKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----------------~~~~~~~~~~~~~~~~-----~~~~~l~i~ 171 (323)
.|....+.+|++++|.|.+.+.+ .+.+.||| ++..... ....+|+. .....|.|.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 7 HPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQ-GVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp ECSEEEEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECT-TCCGGGEEEEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecC-cccCCcEEEEecCCCEEEEEEC
Confidence 45566788999999999998876 78999998 2221111 11224554 234589999
Q ss_pred eeecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecCCCC--cEEE
Q psy15235 172 KTTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGSPPP--TVEW 239 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~~--~~~W 239 (323)
+++.+|+|.|.|.+ .+..+ .........+.|.. +|.+.. +....+.+|+.++|.|.+.|.|++ .+.|
T Consensus 83 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 83 SAHPEDSSFYICSA-RTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp SCCGGGCEEEEEEE-CCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCHHHCEEEEEEE-ecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999 65421 11122334566653 444432 222335569999999999887554 8999
Q ss_pred EECCeeeeccCCeeeeec---C-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 240 RIGNDTYFRSQGRIKLSE---H-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~---~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
+++|..+..... ..... . . .++ ...+.|.|.....+| .|.|+|.|.|....
T Consensus 162 ~k~g~~l~~~~~-~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVC-TDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEE-ECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcc-cccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 999988753211 11000 0 0 011 123568999998888 99999999998754
No 199
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.82 E-value=1.1e-18 Score=141.92 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=114.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE--e----ceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT--Q----SKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~--~----~~~~l~i~ 171 (323)
.|....+.+|++++|.|.+.+.+.. .+.+.|+|++ .... . ......|+. . ....|.|.
T Consensus 32 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 110 (282)
T 1qok_A 32 QSGAELVRSGTSVKLSCTASGFNIK-DSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS 110 (282)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEeCCCeEEEEEeccCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence 3455678899999999999876411 4689999953 1111 0 011235554 1 24689999
Q ss_pred eeecCCCeeEEEEEEcCCCC---CCCCceeeeeEEEecc---------------eee-eeceeEEeeCCeEEEEEEEecC
Q psy15235 172 KTTVDDAGQYSCRLIDPKST---NTTPLAQADFDVIMKP---------------TAK-LVETLTVIEGEKLRLECLVVGS 232 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~~p---------------~~~-~~~~~~~~~g~~~~l~C~~~g~ 232 (323)
+++.+|+|.|.|.+ .+..+ .........|.|...| .+. .+....+.+|++++|.|.+.+.
T Consensus 111 ~v~~~DsG~Y~C~~-~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 189 (282)
T 1qok_A 111 SLTSEDTAVYYCNE-GTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS 189 (282)
T ss_dssp SCCGGGCEEEEEEE-ECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred cCChhhCEEEEEEe-ccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence 99999999999999 66532 1111223456666542 233 3345678899999999999998
Q ss_pred CCCcEEEEE--CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 233 PPPTVEWRI--GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 233 p~~~~~W~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
| +.+.|++ ++..+.. ...++.... .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec----CCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 8 8999999 5544310 123333221 0135689999999999999999999854
No 200
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.82 E-value=1.4e-19 Score=140.82 Aligned_cols=175 Identities=17% Similarity=0.245 Sum_probs=113.9
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEE---EEEe--ecccCcceEEEeec
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK---YSIH--EAILESGYVQSSLF 99 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~---l~i~--~~~~~G~Y~C~~~~ 99 (323)
.+.++.+.+|+++.|.|.+ .+.+.+.|++++..+........... .....+.+. |.+. ...|+|.|+|.+.+
T Consensus 15 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n 93 (212)
T 2v9r_A 15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN 93 (212)
T ss_dssp CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSE-EECTTSCEEESSCCCCSSCCCSCEEEEEEEEE
T ss_pred CCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccce-EEecCCcEEEEEEEecCCCcccCeEEEEEEEC
Confidence 4567889999999999994 46789999999987765421111111 111122221 2223 33459999999987
Q ss_pred cCCcc-----ceeeee-----eeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEEeceeEE
Q psy15235 100 IPRMN-----AITGNY-----DIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI 168 (323)
Q Consensus 100 ~~~~~-----~~~~~~-----~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 168 (323)
..+.. .+.+.. ...+....+..|+.++|.|.+ .+.+ .+.+.|++++..+... ..++......|
T Consensus 94 ~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~~~l~~~---~~~~~~~~~~L 167 (212)
T 2v9r_A 94 YLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP---EPTISWKKDGSPLDDK---DERITIRGGKL 167 (212)
T ss_dssp TTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEES---CCEEEEEETTEEECTT---STTEEEETTEE
T ss_pred CCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCC---CCEEEEEECCccCCCC---cceEEccCCeE
Confidence 65432 111111 113444567889999999998 7777 6899999999988651 23344445689
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK 210 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~ 210 (323)
.|.++..+|+|.|+|.+ .|..+. .....+.|.|..+|.+.
T Consensus 168 ~i~~~~~~d~G~Y~C~a-~N~~g~-~~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 168 MITYTRKSDAGKYVCVG-TNMVGE-RESEVAELTVLERPSFV 207 (212)
T ss_dssp EESSCCGGGCEEEEEEE-EETTEE-EECCCEEEEEEC-----
T ss_pred EEeeCCHhhCeeEEEEE-ecccCc-eecceEEEEEEeCchHh
Confidence 99999999999999999 676432 12334788888877654
No 201
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.82 E-value=5.8e-20 Score=142.58 Aligned_cols=168 Identities=13% Similarity=0.239 Sum_probs=108.5
Q ss_pred EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
+..|++++|.|.+.+.+ |. ...|.|+|++..+..... ...++ .....|.|.+++.+|+|.|+|.+ .+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a-~~~~ 91 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTKPREEQFNSTF-RSVSELPIMHQDWLNGKEFKCRV-NSAA 91 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCC-CCEEEEEETTEEECCCEEECCCEETTTEE-EEEEEEECCHHHHHTTCCEEEEE-ECTT
T ss_pred hccCCceEEEEEEeCcccCCC-ceEEEEEECCccccccccCCCcCcCCCcE-EEEEEEEEehhHcCCCCEEEEEE-EccC
Confidence 67899999999998763 21 359999999876643100 01122 23457999999999999999999 6664
Q ss_pred CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-Cc
Q psy15235 191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TA 264 (323)
Q Consensus 191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 264 (323)
+.......+.+ .+..+|.+.+.. ......|+.+.|.|.+.|. |+ +.+.|++||..+.... ........++. ..
T Consensus 92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~ 170 (207)
T 2vol_A 92 FPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK-NTQPIMDTDGSYFV 170 (207)
T ss_dssp CSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE-ECCCEECTTSCEEE
T ss_pred CCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc-cCCceECCCCCEEE
Confidence 33222223333 344566665322 1122358999999999885 55 3899999998764321 11111001111 12
Q ss_pred ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.|.|.....+|.|.|+|.|.|...
T Consensus 171 ~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 171 YSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred EEEEEECHHHcCCCCEEEEEEECCCC
Confidence 35677877777889999999999873
No 202
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.81 E-value=4.2e-19 Score=138.69 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=107.9
Q ss_pred CCceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEe
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSS 97 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~ 97 (323)
+.+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+.... .............|.|.++ .|+|.|+|.+
T Consensus 8 ~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI----GRRLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp CCCCEEESSCSEEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC----SEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCCCccCCCCCEEEEEEcCCCCCEEEEEECCCcccccc----cccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 34455544446789999999999954 457899999998776431 0100011122014555554 5599999999
Q ss_pred eccCCc----ccee---------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEec
Q psy15235 98 LFIPRM----NAIT---------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQS 164 (323)
Q Consensus 98 ~~~~~~----~~~~---------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+..+. ..+. |.+...+ ...+.+|++++|.|...+.+ .+.+.|+|+|..+.. .......
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~---~~~~~W~k~g~~~~~----~~~~~~~ 155 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIP---FDRFSLAKEGELSLP----QHQSGEH 155 (218)
T ss_dssp EETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSC---CSEEEEEETTCSSCC----SEEECSS
T ss_pred EcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCC---CCEEEEEECCCcccc----cccCCCc
Confidence 886432 1111 1121222 23467899999999766655 579999999987654 1111245
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCCC---CCCCceeeeeEEEe
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKST---NTTPLAQADFDVIM 205 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~ 205 (323)
...|.|.+++.+|+|.|+|.+ .+... ....+..+.|.|..
T Consensus 156 ~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 156 PANFSLGPVDLNVSGIYRCYG-WYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp SEEEECCSCCGGGCEEEEEEE-ECTTSTTEECCCCCCEEEEEC-
T ss_pred cCEEEEccCCcccCEEEEEEE-EcCCCCCcCCCCCCcEEEEEec
Confidence 678999999999999999999 55421 12334455555543
No 203
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.81 E-value=6.6e-19 Score=134.83 Aligned_cols=162 Identities=18% Similarity=0.298 Sum_probs=108.0
Q ss_pred eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCcc
Q psy15235 29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRMN 104 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~~ 104 (323)
..+.+.+|+++.|.|.+ .+.+.+.|+++|..+... .. +... .....|.|.++ .|+|.|+|.+.+..+..
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----~~-~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 84 (192)
T 2va4_A 12 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EK-YILK--GSNTELTVRNIINSDGGPYVCRATNKAGED 84 (192)
T ss_dssp EEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCS----SS-EEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCC----cc-EEEe--CCeeEEEEecCChhcCcEEEEEEEcccccc
Confidence 34678899999999995 466799999999877654 11 1122 23334555555 45999999998876554
Q ss_pred ceeeeeee-------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccccc-cccCcEE----eceeEEEE
Q psy15235 105 AITGNYDI-------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEAT-ELSGRLT----QSKDSITI 170 (323)
Q Consensus 105 ~~~~~~~~-------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~-~~~~~~~----~~~~~l~i 170 (323)
.....+.+ .+....+..|+.++|.|.+.+.+ .+.+.|+++ +..+.... ....++. .....|.|
T Consensus 85 ~~~~~l~V~~~p~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 161 (192)
T 2va4_A 85 EKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEP---IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 161 (192)
T ss_dssp EEEEEEEEEEEEEEEEECCEEECTTSEEEEEEEEEEES---CCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEE
T ss_pred ceEEEEEEEccCcccccCcceEEeCCeEEEEEEecCCC---CCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEE
Confidence 32222222 11223456799999999999987 689999998 55543311 1123333 33578999
Q ss_pred eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
.++..+|+|.|+|.| .|..+. ....+.|.|
T Consensus 162 ~~~~~~d~G~Y~C~a-~n~~g~--~~~~~~l~V 191 (192)
T 2va4_A 162 KDVKLSDSGRYDCEA-ASRIGG--HQKSMYLDI 191 (192)
T ss_dssp ESCCGGGCEEEEEEE-ECSSCE--EEEEEEEEE
T ss_pred ecCCcccCEEEEEEE-EecCCc--eEEEEEEEe
Confidence 999999999999999 777433 444444444
No 204
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.81 E-value=1.1e-18 Score=139.76 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=119.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~ 171 (323)
.+....+.+|++++|.|.+.+.+.. .+.+.|+|. +..+.. .....+++. .....|.|.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 85 (253)
T 3uzq_A 7 QSGAELVKPGASVRLSCTASGFNIK-DTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS 85 (253)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCeeecCCCcEEEEEEeeCCccc-CceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence 4555678899999999999874311 468999982 221110 111234544 124569999
Q ss_pred eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---------------cceee-eeceeEEeeCCeEEEEEEEecCCCC
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---------------KPTAK-LVETLTVIEGEKLRLECLVVGSPPP 235 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~ 235 (323)
+++.+|+|.|.|.+ .+.... .......|.|.. ++.+. .+....+.+|++++|.|.+.+.|.+
T Consensus 86 ~v~~~DsG~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 86 SLTSGDTAVYYCSR-GWEGFA-YWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp SCCGGGCEEEEEEE-CSSSCC-EECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred CCCcccCEEEEEEE-eeCCcc-EECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999 664222 112344566653 33444 3445778999999999999988776
Q ss_pred ----cEEEEECC--eeee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235 236 ----TVEWRIGN--DTYF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298 (323)
Q Consensus 236 ----~~~W~~~~--~~~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~ 298 (323)
.+.|++++ .... . ...++.... .....+|+|.+++.+|+|.|+|.|.|..+... ..
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~f---g~ 236 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG----SRTDFTLTINPVEADDVATYFCQRSNEVPWTF---GG 236 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCB---CC
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEE---CC
Confidence 89999842 2211 0 112232220 11356799999999999999999999765422 22
Q ss_pred EEEEEEcceecC
Q psy15235 299 FVYVRVKGKSFG 310 (323)
Q Consensus 299 ~~~l~v~~~~~~ 310 (323)
-..|.|.+.++.
T Consensus 237 gt~l~v~~~~~~ 248 (253)
T 3uzq_A 237 GTKLEIKRPLEH 248 (253)
T ss_dssp CEEEEECCC---
T ss_pred CEEEEEcCCCCC
Confidence 345666666544
No 205
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.7e-18 Score=138.88 Aligned_cols=171 Identities=15% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCceeEEecCCcEEEEEEeecCC-CCCCceEEEEECC--eecc-------------ccccccCcEE------eceeEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGN--KSIT-------------EATELSGRLT------QSKDSITI 170 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~------~~~~~l~i 170 (323)
.+....+.+|++++|.|.+.+.. + .+.+.|||.. .... ......+|+. .....|.|
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~--~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 89 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFS--HFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 89 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGG--GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred ecCCceecCCCeEEEEEEeeccccc--CceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEE
Confidence 55666788999999999998841 2 5799999732 1110 0111234554 12457999
Q ss_pred eeeecCCCeeEEEEEEcCCC----------CCCCCceeeeeEEEec---------------ce-eeeeceeEEeeCCeEE
Q psy15235 171 RKTTVDDAGQYSCRLIDPKS----------TNTTPLAQADFDVIMK---------------PT-AKLVETLTVIEGEKLR 224 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~----------~~~~~~~~~~l~v~~~---------------p~-~~~~~~~~~~~g~~~~ 224 (323)
.+++.+|+|.|.|.+ .+.. ..........|.|... +. +..+....+.+|++++
T Consensus 90 ~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~ 168 (256)
T 3juy_B 90 RSLRSADTAVYYCAR-VGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERAT 168 (256)
T ss_dssp CSCCGGGCEEEEEEE-CCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEE
T ss_pred CCCCcccCEEEEEeE-EeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEE
Confidence 999999999999999 6540 1112233445666552 22 3345567788999999
Q ss_pred EEEEEecCCC-CcEEEEEC--Ceeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 225 LECLVVGSPP-PTVEWRIG--NDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 225 l~C~~~g~p~-~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
|.|.+.+.|. +.+.|++. +..+.. ...++.... .....+|+|.+++.+|+|.|.|.|.|..+
T Consensus 169 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 169 FSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG----SGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred EEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 9999988876 89999983 222110 112333221 01356799999999999999999999653
No 206
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.81 E-value=2.5e-18 Score=137.91 Aligned_cols=172 Identities=13% Similarity=0.219 Sum_probs=114.1
Q ss_pred eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc---------cccccCcEE------eceeEEEEeeee
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE---------ATELSGRLT------QSKDSITIRKTT 174 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~---------~~~~~~~~~------~~~~~l~i~~~~ 174 (323)
..|....+.+|++++|.|.+.+.+ .+.+.|||.. ..... ......++. .....|.|.+++
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 8 QPDARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp CSCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred ecCceEEecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 356667788999999999998886 7899999832 11100 001123332 245679999999
Q ss_pred cCCCeeEEEEEEcCCCCCC--CCceeeeeEEEe--------------------cceee-eeceeEEeeCCeEEEEEEEec
Q psy15235 175 VDDAGQYSCRLIDPKSTNT--TPLAQADFDVIM--------------------KPTAK-LVETLTVIEGEKLRLECLVVG 231 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~--------------------~p~~~-~~~~~~~~~g~~~~l~C~~~g 231 (323)
.+|+|.|.|.+ .+..+.. .......|.|.. +|.+. .+....+.+|++++|.|.+.+
T Consensus 85 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 85 RSDSAVYFCAV-SAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp GGGCSEEEEEE-ECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred cccCEEEEEEE-ecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence 99999999999 5653211 122234556654 33444 344566779999999999987
Q ss_pred CCCCcEEEEECC--eeee--c------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 232 SPPPTVEWRIGN--DTYF--R------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 232 ~p~~~~~W~~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
. .+.+.|++.. .... . ...++.... . .....+|+|.+++.+|+|.|+|.|.|..|.
T Consensus 164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR--T-TQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC--C-SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe--C-CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 6 6789999832 1110 0 012222221 1 123568999999999999999999998765
No 207
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.81 E-value=6.7e-20 Score=145.04 Aligned_cols=175 Identities=17% Similarity=0.256 Sum_probs=112.3
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
|....+.+|++++|.|.+.+.++ .+ .+.|+|++ ..+. .......++. .....|.|.+++.+|+
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 103 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNI--GSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDE 103 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTT--TTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTC
T ss_pred CCcEEeeCCCcEEEEEEecCCCC--CCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHC
Confidence 45556788999999999988653 23 79999863 2220 0011234554 2456899999999999
Q ss_pred eeEEEEEEcCCCCC-CCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecCC-C-CcEEEEECCeeeeccC
Q psy15235 179 GQYSCRLIDPKSTN-TTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGSP-P-PTVEWRIGNDTYFRSQ 250 (323)
Q Consensus 179 G~y~C~~~~~~~~~-~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p-~-~~~~W~~~~~~~~~~~ 250 (323)
|.|.|.+ .+..+. ........+.|. .+|.+.. +.......|+.++|.|.+.|.+ + +.+.|+++|..+....
T Consensus 104 G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 182 (234)
T 2j6e_L 104 ADYYCAT-WDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGV 182 (234)
T ss_dssp SEEEEEE-EETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSE
T ss_pred EEEEEEE-EcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCc
Confidence 9999999 555321 011223345553 2454442 2222234588999999998864 3 3899999998875331
Q ss_pred CeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 251 GRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.........++ ....+.|.|.++..+|.|.|+|.|.|..+.
T Consensus 183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 224 (234)
T 2j6e_L 183 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 224 (234)
T ss_dssp EECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred cccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence 11111100111 123578999999999999999999998844
No 208
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.81 E-value=1.4e-18 Score=131.86 Aligned_cols=148 Identities=16% Similarity=0.303 Sum_probs=104.7
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR 102 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~ 102 (323)
.+..+.+.+|++++|.|.+. +.+.+.|++++..+... .......+.......|.|.+++. +|.|+|.+.+..+
T Consensus 8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 84 (182)
T 1rhf_A 8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL---DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE 84 (182)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS---EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC---CceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCC
Confidence 35667899999999999953 56799999999877654 11111122122245677776654 9999999988644
Q ss_pred cc---ce------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235 103 MN---AI------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLTQSKDSITIRK 172 (323)
Q Consensus 103 ~~---~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 172 (323)
.. .. .|.+...+....+..|+.+.|.|.+.+.| .+ .+.|++++..+.. .. .....|.|.+
T Consensus 85 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~~~~~~~----~~---~~~~~L~i~~ 154 (182)
T 1rhf_A 85 TEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP---EPVTIVWWRGTTKIGG----PA---PSPSVLNVTG 154 (182)
T ss_dssp CEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSS---SCCEEEEEETTEECSC----SE---ESSEEEEECC
T ss_pred cEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCC---CCCEEEEEcCCeECCC----CC---CCceEEEEec
Confidence 31 11 12222244445578899999999999988 67 9999999988865 11 1567888888
Q ss_pred eecCCCeeEEEEEEcCCC
Q psy15235 173 TTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~ 190 (323)
+ +|+|.|+|.+ .|..
T Consensus 155 ~--~d~G~Y~C~a-~N~~ 169 (182)
T 1rhf_A 155 V--TQSTMFSCEA-HNLK 169 (182)
T ss_dssp C--SSCEEEEEEE-EETT
T ss_pred c--ccCeEEEEEE-ECCC
Confidence 7 5899999999 6764
No 209
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.81 E-value=1.3e-18 Score=138.24 Aligned_cols=170 Identities=16% Similarity=0.270 Sum_probs=114.4
Q ss_pred CCceeEEecCCcEEEEEEeecCC---CCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeec
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPP---PGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTV 175 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~---~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~ 175 (323)
.|....+.+|++++|.|.+.+.+ + .+.+.|+|+. .... . ......|+. .....|.|.+++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (240)
T 1moe_A 7 SPASLAVSLGQRATMSCRAGESVDIFG--VGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA 84 (240)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCEETT--EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eCCeEEecCCCCEEEEEeCCCccccCC--CceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh
Confidence 45666788999999999998875 2 4689999952 2111 0 011234554 2345899999999
Q ss_pred CCCeeEEEEEEcCCCCCCCCceeeeeEEEecc-------eeeeeceeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ce
Q psy15235 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP-------TAKLVETLTVIEGEKLRLECLVVGSPP--PTVEWRIG--ND 244 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p-------~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~ 244 (323)
+|+|.|.|.+ .+..+. .......|.|..++ .+..+....+.+|++++|.|.+.+.|. +.+.|+++ +.
T Consensus 85 ~D~G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~ 162 (240)
T 1moe_A 85 DDVATYYCQQ-TNEDPY-TFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ 162 (240)
T ss_dssp GGCEEEEEEE-CSSSSC-CBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred hhCEEEEEEE-ccCCce-eecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence 9999999999 665322 12334566666532 233455667889999999999998874 58999995 22
Q ss_pred eee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 245 TYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 245 ~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
.+. ....++.+.. .......+|+|.+++.+|+|.|+|.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 163 GLEWIGRIDPANGNSKYVPKFQGKATITA--DTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp CCEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CcEEEEEEcccCCccccCccccccEEEEE--cccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 211 0122343331 11113578999999999999999999953
No 210
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.81 E-value=6.3e-19 Score=144.10 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=124.7
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+...+....+.+|++++|.|.+.+ .+.|++++..+.. .......|.|.+++.+|+|.|+|.+
T Consensus 12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~-------~i~W~~~~~~~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~~- 76 (290)
T 2o26_X 12 PPSIHPAQSELIVEAGDTLSLTCIDPD-------FVRWTFKTYFNEM-------VENKKNEWIQEKAEATRTGTYTCSN- 76 (290)
T ss_dssp CCEESSCSSEEEEETTSCEEEEEECTT-------EEEEEEECSSSCE-------EEECSSEEEETTCCGGGCEEEEEEE-
T ss_pred CCEEeCCCCeEEEcCCCcEEEEECCCC-------cEEEecCCcceee-------ecCCCceEEEeccCHHhCeEEEEEe-
Confidence 344555666677889999999998765 7999999887621 0123378999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCC-CcEEEE-ECCeeeeccCCeeeeecCCCCCC
Q psy15235 187 DPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPP-PTVEWR-IGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+ + ....+.|.|..+|.+. .+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+.. ..++...
T Consensus 77 ~n--g---~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~-~~~~~~~------- 142 (290)
T 2o26_X 77 SN--G---LTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT-DLTFVPN------- 142 (290)
T ss_dssp SS--S---CEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT-TCEEEEE-------
T ss_pred eC--C---ccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC-CCceeeC-------
Confidence 66 1 2667778887766443 444667889999999999985 77 899995 57766643 3444444
Q ss_pred cceeEEEeecCcCCCe-EEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 264 ANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G-~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
....|.|.++..+|+| .|+|.|.|..|. .....+.|.|.
T Consensus 143 ~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~---~~s~~~~l~V~ 182 (290)
T 2o26_X 143 PKAGITIKNVKRAYHRLCVRCAAQRDGTW---LHSDKFTLKVR 182 (290)
T ss_dssp TTTEEEEESCCGGGTTCEEEEEEEETTEE---EECCCEEEEEE
T ss_pred CCCCEEEecccHHHCCCEEEEEEEECCce---EEeEEEEEEEE
Confidence 3468999999999999 999999998643 12334666665
No 211
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.81 E-value=1.2e-18 Score=145.20 Aligned_cols=188 Identities=18% Similarity=0.248 Sum_probs=126.8
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC-CCceEEEEECCe--ec--c---------ccccccCcEE-----eceeEEEEeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNK--SI--T---------EATELSGRLT-----QSKDSITIRKT 173 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~--~~--~---------~~~~~~~~~~-----~~~~~l~i~~~ 173 (323)
.+....+.+|++++|.|.+.+.++. ..+.+.|++++. .. . ....+.+|+. .....|.|.++
T Consensus 20 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 99 (331)
T 3u83_A 20 VNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRL 99 (331)
T ss_dssp -CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSC
T ss_pred cCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEccc
Confidence 4455668899999999999876211 056899999541 11 0 0112234443 24577999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeC---CeEEEEEE-EecCCCCcEEEEECCeee
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEG---EKLRLECL-VVGSPPPTVEWRIGNDTY 246 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g---~~~~l~C~-~~g~p~~~~~W~~~~~~~ 246 (323)
+.+|+|.|+|.+..+.. ......+.|.|..+|.+. .+....+.+| +.+.|.|. +.+.|.+.+.|++++...
T Consensus 100 ~~~D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~ 177 (331)
T 3u83_A 100 ELEDEGVYICEFATFPT--GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGE 177 (331)
T ss_dssp CGGGCEEEEEEEEEETT--EEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred CcccCcEEEEEEEecCC--CccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCc
Confidence 99999999999634442 235667788888877653 2334567778 78999998 788999999999963322
Q ss_pred eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~ 309 (323)
... . ............+.|.|.++..+|.|.|+|.|.|..|. ....+.|.|..+|.
T Consensus 178 ~~~-~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~----~~~~~~l~V~~~P~ 233 (331)
T 3u83_A 178 AEY-Q--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR----FKESLTLNVQYEPE 233 (331)
T ss_dssp EEE-E--EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEE----EEEEEECCEEEEEE
T ss_pred ccc-c--eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCc----ceeeEEEEEecCCe
Confidence 110 0 00000000012467999999999999999999999865 66777777776654
No 212
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=137.50 Aligned_cols=173 Identities=11% Similarity=0.119 Sum_probs=112.7
Q ss_pred eEEEeeceEEecCCcEEEEEEecc--Cc---eEEEEEcCccceeecc-----C---------cceEE--EeeeeCCeEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI--FE---QVKWQLNGRNINQSSV-----D---------SGFAA--TANLTEDNFKY 82 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~--~~---~v~W~~~g~~~~~~~~-----~---------~~~~~--~~~~~~~~~~l 82 (323)
.+..++.+.+.+|++|+|.|.+.+ .+ .|+|+|++..+..... . .++.. .......+..|
T Consensus 2 ~l~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL 81 (218)
T 4frw_A 2 ELETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSV 81 (218)
T ss_dssp CEECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCE
T ss_pred eEeCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEE
Confidence 466778899999999999999543 32 5899998765543210 0 00000 00111334557
Q ss_pred EEeeccc--CcceEEEeeccCCccceee-eee--e-------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPRMNAITG-NYD--I-------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~~~~~~~-~~~--~-------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~ 150 (323)
.|.+++. +|.|+|.+.+..+...... ... . .+....+..|+.+.+.|.+.+.| .+.|+|++++..
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p---~p~i~W~~~~~~ 158 (218)
T 4frw_A 82 LLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSP---APSVTWDTEVKG 158 (218)
T ss_dssp EESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBS---CCEEEEEESSCC
T ss_pred EEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCc---CceEEEEECCcc
Confidence 7776654 9999999876544321111 111 1 12222355688999999999988 789999999887
Q ss_pred ccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 151 ITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 151 ~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
+.. ..... .....|.|.++..+|+|.|+|.| .|..+......++.|.|.
T Consensus 159 ~~~----~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a-~N~~g~~~~~~t~~v~V~ 212 (218)
T 4frw_A 159 TTS----SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVV-SHPGLLQDQRITHILHVS 212 (218)
T ss_dssp EEE----EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCEE
T ss_pred ccc----CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEE-EeCCCCeEEEEEEEEEEC
Confidence 765 22222 33567999999999999999999 788666555555555554
No 213
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.81 E-value=3.3e-19 Score=140.32 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=116.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~ 171 (323)
.+....+.+|++++|.|.+.+.+.. ...+.|||++ ..... ...+.+|+. .....|.|.
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCCCeEEcCCCCEEEEEEecCCccc-cceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 4556678899999999999876421 3689999853 21110 011245654 135689999
Q ss_pred eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCe
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGND 244 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~ 244 (323)
+++.+|+|.|.|.+ .+.... .......|.|.. +|.+.. .+...+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus 85 ~v~~~D~G~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 162 (227)
T 1mju_H 85 SLTSDDSAVYYCAN-KLGWFP-YWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL 162 (227)
T ss_dssp SCCGGGCEEEEEEE-EETTEE-EECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCCcccCEEEEEEE-CCCCce-EEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence 99999999999999 553111 111234666653 344442 223346689999999999875 776 899999887
Q ss_pred eeecc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235 245 TYFRS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 245 ~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~ 312 (323)
.+... ..... . .......+.|+|..+..+| |.|+|.|.|..+. ......+.+.++|....
T Consensus 163 ~~~~~~~~~~~-~--~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~----~~~~~~~~~~~~p~~~~ 223 (227)
T 1mju_H 163 SSGVHTFPAVL-Q--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS----TKVDKKIEPRGPTIKPC 223 (227)
T ss_dssp CTTEEECCCEE-E--TTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT----EEEEEECCCCCC-----
T ss_pred cCCcEECCcee-c--CCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC----cceEEEeCCCCCCCCCC
Confidence 54211 11110 0 0011135689999998888 9999999998844 56666777777766543
No 214
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.81 E-value=5.5e-19 Score=141.41 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=103.1
Q ss_pred CcchhHHHHHHHHHHhhhccCCceEEE-eeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceee-------
Q psy15235 1 MSMIHLCLSLLAIFVHQSISADGKITY-FGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQS------- 63 (323)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~------- 63 (323)
|.|..+++.+++++..........+.. +..+.+.+|++|+|.|.+. + .+.+.|+|++ ..+...
T Consensus 13 m~M~~~~ll~ll~l~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~ 92 (252)
T 3bkj_L 13 LKMKLPVRLLVLMFWIPGSSSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTR 92 (252)
T ss_dssp ---------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred eeehHHHHHHHHHHhccccccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence 555554433333332223334445554 6778899999999999954 3 3789999964 222110
Q ss_pred --ccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc---ceeeeeee---CCceeE------EecCCcEEE
Q psy15235 64 --SVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN---AITGNYDI---EPKYKV------FEYRVPFTL 127 (323)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~---~~~~~~~~---~~~~~~------~~~g~~v~l 127 (323)
....+ +......+...|.|.+++ |+|.|+|.+.+..... .....+.. .|.+.+ +..|+.++|
T Consensus 93 ~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L 170 (252)
T 3bkj_L 93 FSGVPDR--FSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASV 170 (252)
T ss_dssp CTTCCTT--EEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEE
T ss_pred cCCcCCc--eEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEE
Confidence 01111 222334666788888775 4999999998764321 11111111 233222 125889999
Q ss_pred EEEeecCCCCCCceEEEEECCeecccc-ccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 128 KCNVTSPPPGDDYQIVWYKGNKSITEA-TEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 128 ~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|.+.+.+|. ..+|.|+++|..+... ... ++.+ .....|.|.++..+|+|.|+|.+ .|.
T Consensus 171 ~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~ 237 (252)
T 3bkj_L 171 VCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THK 237 (252)
T ss_dssp EEEEEEEBSS-CCEEEEEETTEEECSSEEEEECCCCTTTCCE-EEEEEEEEEHHHHHHCCEEEEEE-ECT
T ss_pred EEEEeeEeCC-CcEEEEEECCeecCCCeeeecCcccCCCCCE-EEEEEEEEcchhccCCCeEEEEE-EeC
Confidence 9999885541 2489999999887542 000 0111 22356899999999999999999 676
No 215
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.5e-18 Score=130.75 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=99.4
Q ss_pred CCceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeec
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLF 99 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~ 99 (323)
+.+.+.......+.+|++++|.|.+. +.+.+.|+|+|.... ...+.+.|......|+|.|+|.+.+
T Consensus 7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~-------------~~~~~L~i~~v~~~D~G~Y~C~a~n 73 (184)
T 2gi7_A 7 PKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRY-------------QDQAVLFIPAMKRSLAGRYRCSYQN 73 (184)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEECSTTCSEEEEEETTTCCE-------------ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeEEeCCCccccCCCcEEEEEeCCCCCCEEEEEECCcccc-------------CcccEEEECcCChhhCceEEEEEEc
Confidence 34455544445789999999999954 567999999987611 1233344333444569999999988
Q ss_pred cCCc----cceeeeeee---CCce-----eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeE
Q psy15235 100 IPRM----NAITGNYDI---EPKY-----KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS 167 (323)
Q Consensus 100 ~~~~----~~~~~~~~~---~~~~-----~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
..+. ..+...+.. .|.. ..+.+|+.++|.|.+.+.+ +.+.|+|+|..+.. ..+.......
T Consensus 74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~~~~ 145 (184)
T 2gi7_A 74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF----DQFALYKEGDPAPY----KNPERWYRAS 145 (184)
T ss_dssp TTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC----CEEEEEECCCCTTS----CCCCEEEEES
T ss_pred CCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC----cEEEEEECCCcCcc----eecCCCceEE
Confidence 5432 112111111 1111 1245799999999987654 58999999987764 2222245678
Q ss_pred EEEeeeecCCCeeEEEEEEcCC
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.|.+++.+|+|.|+|.+ .|.
T Consensus 146 L~i~~v~~~D~G~Y~C~a-~n~ 166 (184)
T 2gi7_A 146 FPIITVTAAHSGTYRCYS-FSS 166 (184)
T ss_dssp SSEEEETTCCSEEEEEEE-ECT
T ss_pred EEEccCCccCCeEEEEEE-EeC
Confidence 999999999999999999 665
No 216
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.80 E-value=3.1e-18 Score=132.19 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=106.9
Q ss_pred eEEecCCcEEEEEEe--ccCceEEEEEcC-ccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccc
Q psy15235 31 TEIMEGAPINISCIL--TIFEQVKWQLNG-RNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNA 105 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~--~~~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~ 105 (323)
+.+.+|++++|.|.+ .|.+.+.|+++. ..+.. .. ........|.|.+++ |+|.|+|.+.+..+...
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~------~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~ 81 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG------KV---TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE 81 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS------EE---EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc------eE---EEcCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence 445699999999995 467889999843 22211 11 112334457777654 49999999998765433
Q ss_pred eeeeeee--CCc-e-----eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC--c--EEeceeEEEEeee
Q psy15235 106 ITGNYDI--EPK-Y-----KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG--R--LTQSKDSITIRKT 173 (323)
Q Consensus 106 ~~~~~~~--~~~-~-----~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~--~~~~~~~l~i~~~ 173 (323)
....+.+ .|. . ..+.+|+.++|.|.+.+.+|...++|.|++++..+........ . .......|.|...
T Consensus 82 ~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~ 161 (202)
T 1vca_A 82 KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161 (202)
T ss_dssp EEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred eEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence 2333332 221 1 2267899999999998865421258999999987754111000 0 0123455678888
Q ss_pred ecCCCeeEEEEEEcCCCCCC-----CCceeeeeEEEecce
Q psy15235 174 TVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIMKPT 208 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~-----~~~~~~~l~v~~~p~ 208 (323)
..+|.|.|+|.| .|..+.. ....++.|.|.++|.
T Consensus 162 ~~d~~g~ytC~A-~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 162 IEDIGKVLVCRA-KLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp GGGTTCEEEEEE-EECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred eccCCCeEEEEE-EccccCCCCcceeEeeEEEEEEecCCC
Confidence 888999999999 6664332 245677888888774
No 217
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.80 E-value=1.7e-18 Score=129.88 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=99.1
Q ss_pred eeceEEecCCcEEEEEEecc---CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235 28 FGDTEIMEGAPINISCILTI---FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN 104 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~ 104 (323)
+....+.+|+++.|.|.+.+ .+.+.|+++|..+... ...+.+......|+|.|+|.+.+.....
T Consensus 11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~ 77 (170)
T 3ry4_A 11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------------TQPSYRFKANNNDSGEYTCQTGQTSLSD 77 (170)
T ss_dssp SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------------CSSEEEEECCGGGCEEEEEEETTSBCCC
T ss_pred CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------------ccceEEEecccccCeEEEEEEeCCCceE
Confidence 34467999999999999543 4689999999877654 2222233344556999999998755444
Q ss_pred ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCe
Q psy15235 105 AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG 179 (323)
Q Consensus 105 ~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 179 (323)
.+...+.. .+....+.+|+.+.|.|.+.+.+| .+.+.|+++|..+.. ......|.|.++..+|+|
T Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~--------~~~~~~L~i~~v~~~d~G 147 (170)
T 3ry4_A 78 PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP--LVKVTFFQNGKSQKF--------SHLDPTFSIPQANHSHSG 147 (170)
T ss_dssp CEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCC--EEEEEEEETTEEEEE--------ESSCCEEEESSCCGGGCE
T ss_pred eEEEEEECCceEecCCCceeecCCeEEEEEECCCCCC--CceEEEEECCeEccc--------cCCCCeEEEEeccccCCE
Confidence 33222221 222234678999999999965443 689999999987653 123567999999999999
Q ss_pred eEEEEEEcCCC
Q psy15235 180 QYSCRLIDPKS 190 (323)
Q Consensus 180 ~y~C~~~~~~~ 190 (323)
.|+|.+ .|..
T Consensus 148 ~Y~C~a-~n~~ 157 (170)
T 3ry4_A 148 DYHCTG-NIGY 157 (170)
T ss_dssp EEEEEE-EETT
T ss_pred EEEEEE-EeCc
Confidence 999999 6663
No 218
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.80 E-value=4.9e-19 Score=137.71 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=111.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE-e-----ceeEEEEeee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT-Q-----SKDSITIRKT 173 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~-~-----~~~~l~i~~~ 173 (323)
|....+.+|++++|.|.+.+.+.. .+.+.|+|++ .... . .....+|+. . ....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEecCCCcEEEEEEEecccCC-CCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 344567889999999999886411 3799999852 2211 0 011245554 1 2358999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeee
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTY 246 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 246 (323)
+.+|+|.|.|.+ .+.. .......|.|.. +|.+. .++...+..|+.++|.|.+.|. |.| .+.|++++..+
T Consensus 86 ~~~D~G~Y~C~~-~~~~---~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~ 161 (210)
T 3d9a_H 86 TTEDTATYYCAN-WDGD---YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 161 (210)
T ss_dssp CGGGCEEEEEEE-TTSS---CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CcccCEEEEEEE-ecCc---ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence 999999999999 6652 122234566652 34444 2223446789999999999886 888 99999988753
Q ss_pred eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.......... .......+.|.|.++..+| |.|+|.|.|..|.
T Consensus 162 ~~~~~~~~~~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 203 (210)
T 3d9a_H 162 GVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 203 (210)
T ss_dssp TEEECCCEEE--TTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred ceEEcCCccC--CCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 2111100001 0001134679999998877 9999999999965
No 219
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.80 E-value=1.5e-18 Score=139.35 Aligned_cols=171 Identities=16% Similarity=0.224 Sum_probs=110.7
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc------------cccccCcEE------eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE------------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~------------~~~~~~~~~------~~~~~l~i~~ 172 (323)
.+....+.+|++++|.|.+.+.+.. .+.+.|+|.. ..... ......|+. .....|.|.+
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 92 (257)
T 3gkz_A 14 ESGPSLVKPSQTLSLTCSVTGDSVT-SGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS 92 (257)
T ss_dssp EECCSEECTTCCEEEEEEEEESCCS-SCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEEcCCCcEEEEEEEEccccc-ceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence 3444558899999999999884311 5799999832 11100 011234544 1244799999
Q ss_pred eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEec--------------ceee-eeceeEEeeCCeEEEEEEEecCCCC
Q psy15235 173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIMK--------------PTAK-LVETLTVIEGEKLRLECLVVGSPPP 235 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~--------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~ 235 (323)
++.+|+|.|.|.+ .+..+ .........|.|..+ +.+. .+....+.+|++++|.|.+.+.|.+
T Consensus 93 v~~~DsG~Y~C~~-~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 171 (257)
T 3gkz_A 93 VSSEDTATYYCSY-FDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS 171 (257)
T ss_dssp CCGGGCEEEEEEE-ECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred CChhhCEEEEEEE-ecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence 9999999999999 55411 111223445666543 3333 3445778899999999999988877
Q ss_pred -cEEEEEC--Ceeee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 236 -TVEWRIG--NDTYF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 236 -~~~W~~~--~~~~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.|+++ +..+. . ...++.... .....+|+|.+++.+|+|.|+|.|.+..
T Consensus 172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISSMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEec----CCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 8999983 22211 0 012222221 0134679999999999999999999855
No 220
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.80 E-value=5.7e-19 Score=138.55 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=111.8
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c------------cccccCcEE-e-----ceeEEEEe
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E------------ATELSGRLT-Q-----SKDSITIR 171 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~------------~~~~~~~~~-~-----~~~~l~i~ 171 (323)
....+.+|++++|.|.+.+.+.. .+.+.|+|+. .... . ...+.+|+. . ....|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 8 GGGLVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CceeEcCCCEEEEEEEecCccCC-CCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 34567889999999999875311 4689999853 2110 0 011235554 1 24689999
Q ss_pred eeecCCCeeEEEEEEcCCCCC-C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEE
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTN-T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRI 241 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~-~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~ 241 (323)
+++.+|+|.|.|.+ .+..+. . .......|.|.. +|.+.. ++...+.+|+.++|.|.+.|. |.| .+.|++
T Consensus 87 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 165 (222)
T 1q9r_B 87 TLRAEDSATYYCAR-DHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 165 (222)
T ss_dssp SCCGGGCEEEEEEE-CCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cCCcccCeEEEEEE-eccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence 99999999999999 665320 0 112234566653 344442 223345679999999999885 888 999999
Q ss_pred CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+|..+.......... .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus 166 ~g~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~ 212 (222)
T 1q9r_B 166 GSLSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 212 (222)
T ss_dssp GTBCTTEEEEEEEEE--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred CCeEcceEecccccc--CCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence 987643210000000 0001124679999999999 9999999999965
No 221
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=138.81 Aligned_cols=171 Identities=14% Similarity=0.175 Sum_probs=111.6
Q ss_pred eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235 29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN 104 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~ 104 (323)
..+.+.+|+++.|.|.+ .+.+.+.|+++|..+.......... .......|.|.+++ |+|.|+|.+.+..+..
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~ 98 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK----LRHQQWSLVMESVVPSDRGNYTCVVENKFGSI 98 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCE----EEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccccee----eeccceEEEEEeCCcccCEEEEEEEeecCCce
Confidence 34678999999999994 4567999999998876642221111 12233456666554 4999999998866554
Q ss_pred ceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----CCeeccccccccCcE----E-
Q psy15235 105 AITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----GNKSITEATELSGRL----T- 162 (323)
Q Consensus 105 ~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----~~~~~~~~~~~~~~~----~- 162 (323)
.....+.+ .+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.......... .
T Consensus 99 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p---~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 175 (241)
T 3grw_A 99 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175 (241)
T ss_dssp EEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSS---CCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred EEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCC---CCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence 32222222 23334466799999999999988 67999999 777665411100000 0
Q ss_pred ---eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235 163 ---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209 (323)
Q Consensus 163 ---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~ 209 (323)
.....|.|.++..+|+|.|+|.+ .|.. +.....+.|.|..+|..
T Consensus 176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~--g~~~~~~~l~V~~~p~~ 222 (241)
T 3grw_A 176 ESVEADVRLRLANVSERDGGEYLCRA-TNFI--GVAEKAFWLSVHGPRAA 222 (241)
T ss_dssp SBSEEEEEEEECSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEC------
T ss_pred eecCCceEEEECcCCcccCcEEEEEE-ecCc--ceEEEEEEEEecCCCCC
Confidence 24567999999999999999999 7774 33466667777666544
No 222
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=133.20 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=102.7
Q ss_pred ceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235 23 GKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF 99 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~ 99 (323)
+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+.... . ..........|.|.+++ |+|.|+|.+.+
T Consensus 6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~----~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 3p2t_A 6 PTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDR----Q--NPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79 (196)
T ss_dssp CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTSCSCSEE----E--CCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CEEEccCCCcCCCCCcEEEEeeCCCCCCEEEEEECCCCCcccc----c--ccccCCceEEEEeccCCcccCceEEEEEeC
Confidence 344444334789999999999954 457999999998775430 0 00011234456666654 49999999988
Q ss_pred cCCc----cceeeee---------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc-EEece
Q psy15235 100 IPRM----NAITGNY---------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-LTQSK 165 (323)
Q Consensus 100 ~~~~----~~~~~~~---------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~ 165 (323)
..+. ..+...+ ...+.. .+.+|+.++|.|.+.+.+ +.+.|+|+|..+......... .....
T Consensus 80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~~~~~~~~~~~~~ 154 (196)
T 3p2t_A 80 PVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSPM----DTFLLCKERAAHPLLCLRSEHGAQQHQ 154 (196)
T ss_dssp TTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEEE----EEEEEEETTCCCGGGSEEEEEEEEEEE
T ss_pred CCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCCC----CEEEEEeCCCcccceeecccccccCcc
Confidence 7652 1221111 112221 467899999999998843 589999999876541000000 11456
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
..|.|.+++.+|+|.|+|.+ .|..
T Consensus 155 ~~L~i~~v~~~d~G~Y~C~a-~n~~ 178 (196)
T 3p2t_A 155 AEFPMSPVTSVHGGTYRCFS-SHGF 178 (196)
T ss_dssp EEEEECSCCGGGCEEEEEEE-ECGG
T ss_pred eEEEeCCCcccCCCeEEEEE-EcCC
Confidence 78999999999999999999 6763
No 223
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.80 E-value=2.4e-19 Score=140.15 Aligned_cols=160 Identities=14% Similarity=0.249 Sum_probs=107.8
Q ss_pred EEEeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEE--EEEeec--ccCcceEEEee
Q psy15235 25 ITYFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK--YSIHEA--ILESGYVQSSL 98 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~--l~i~~~--~~~G~Y~C~~~ 98 (323)
+..+.++.+.+|+++.|.|.+. +.+.+.|+++|..+........ .. ....+.+. +.|.++ .|+|.|+|.+.
T Consensus 13 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~-~~--~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~ 89 (217)
T 2vr9_A 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH-RV--QFKDGALFFYRTMQGKKEQDGGEYWCVAK 89 (217)
T ss_dssp EECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSS-EE--ECTTSCEEESSCCBSSSCBCCEEEEEEEE
T ss_pred ecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccce-eE--EecCCceEEEEEeccCCcccCceEEEEEe
Confidence 3345678899999999999954 5679999999987766421111 11 11222222 234443 45999999998
Q ss_pred ccCCcc-----ceeee-----eeeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccccc----ccCcEE-
Q psy15235 99 FIPRMN-----AITGN-----YDIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATE----LSGRLT- 162 (323)
Q Consensus 99 ~~~~~~-----~~~~~-----~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~- 162 (323)
+..+.. .+... +...+....+..|+.+.|.|.+ .+.| .+.+.|++++..+..... ...++.
T Consensus 90 n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~ 166 (217)
T 2vr9_A 90 NRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP---EPTLIWIKDGVPLDDLKAMSFGASSRVRI 166 (217)
T ss_dssp ETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEES---CCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred cCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCC---CCeEEEEECCcCCCcccccccccCCcEEe
Confidence 765532 11111 1123445557889999999998 7777 689999999988763110 123332
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
.....|.|.++..+|+|.|+|.+ .|..+
T Consensus 167 ~~~~~L~i~~~~~~d~G~Y~C~a-~N~~G 194 (217)
T 2vr9_A 167 VDGGNLLISNVEPIDEGNYKCIA-QNLVG 194 (217)
T ss_dssp ETTTEEEESSCCSTTCEEEEEEE-EETTE
T ss_pred cCCCcEEEeeCCHHHCeEEEEEE-Ecccc
Confidence 34568999999999999999999 67743
No 224
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.80 E-value=8.9e-20 Score=142.70 Aligned_cols=168 Identities=15% Similarity=0.305 Sum_probs=107.0
Q ss_pred EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
+.+|++++|.|.+.+.+ |. .+.|.|+|++..+..... ...++ .....|.|.+++.+|+|.|+|.+ .+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~g~Y~C~~-~~~~ 99 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQTHREDYNSTI-RVVSTLPIQHQDWMSGKEFKCKV-NNKD 99 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSC-CEEEEEEETTEEECCCEEEEEEETTTTEE-EEEEEEECCHHHHHTTCCEEEEE-EETT
T ss_pred hccCCCeeEEEEEcCCccCCC-ceEEEEEECCccccCcccccccccCCCeE-EEEEEEEEcHHHcCCCCeEEEEE-ECCc
Confidence 66899999999998763 21 479999999977643110 01122 23457999999999999999999 5653
Q ss_pred CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-Cc
Q psy15235 191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TA 264 (323)
Q Consensus 191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 264 (323)
+.......+.+ .+..+|.+.+.. ......|+.+.|.|.+.| +|.+ .+.|+++|..+.... ........++. ..
T Consensus 100 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~gt~~~ 178 (218)
T 2rgs_A 100 LPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK-DTAPVLDSDGSYFI 178 (218)
T ss_dssp CSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE-ECCCEECTTSCEEE
T ss_pred CCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce-ecccEECCCCCEEE
Confidence 32211222211 334566655322 212235899999999998 5765 899999998774221 11111001111 12
Q ss_pred ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.|.|.....+|.|.|+|.|.|...
T Consensus 179 ~s~l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 179 YSKLNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp EEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred EEEEEECHHHcCCCCeEEEEEEcCCC
Confidence 34567776666779999999999874
No 225
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.80 E-value=1.1e-18 Score=132.02 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=104.5
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-Ceeccc----------cccccCcEE--eceeEEEEeeeecCCCeeE
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITE----------ATELSGRLT--QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y 181 (323)
....+.+|++++|.|.+....+ .+.|.|+++ +..+.. ...+.+|+. ..+.+|.|.+++.+|+|.|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~--~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y 84 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLAS--YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDY 84 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCS--CSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCc--eeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEE
Confidence 3456788999999998754322 579999994 333211 122335655 3567899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.|.+ .+.. .....+.|.|..++.. + .....+..++|.|.+ .| |.|.+.|++++..+.. .
T Consensus 85 ~C~v-~~~~---~~~~~~~L~V~~~~~~---P-~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-------~---- 144 (180)
T 2dru_A 85 YMRM-LHET---EDQWKITMEVYEMVSK---P-MIYWECSNATLTCEVLEG-TDVELKLYQGKEHLRS-------L---- 144 (180)
T ss_dssp EEEE-ESSS---EEEEEEEEEEECCCCC---C-EEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEEE-------E----
T ss_pred EEEE-EcCC---eEEEEEEEEEECCCCC---C-EEEecCCCEEEEEEeCCC-CCCEEEEEECCeECcC-------C----
Confidence 9999 6652 3455667777653211 0 111245679999999 66 8999999999988751 1
Q ss_pred CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 261 KGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+|.+.. .+|+|.|+|.|.|..|.
T Consensus 145 ---~~~~l~~~~--~~d~g~Y~C~a~N~~~~ 170 (180)
T 2dru_A 145 ---RQKTMSYQW--TNLRAPFKCKAVNRVSQ 170 (180)
T ss_dssp ---SSSEEEEEC--SCCSSCEEEEEEETTEE
T ss_pred ---CCCEEEEEE--hhcCccEEEEEecCcCc
Confidence 245566633 78999999999999965
No 226
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.80 E-value=1.1e-18 Score=139.58 Aligned_cols=177 Identities=14% Similarity=0.259 Sum_probs=114.4
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
.|....+.+|++++|.|.+.+.++. ..+.|.|+|++ .... ......+|+. .....|.|.+++.+
T Consensus 40 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 119 (252)
T 3bkj_L 40 TPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAE 119 (252)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcc
Confidence 4566678899999999999886521 03789999954 1110 0011234554 23458999999999
Q ss_pred CCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeecc-
Q psy15235 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRS- 249 (323)
Q Consensus 177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~- 249 (323)
|+|.|.|.+ .+..+. .......+.|.. +|.+.. +....+.+|+.++|.|.+.|. |++ .+.|+++|..+...
T Consensus 120 D~G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~ 197 (252)
T 3bkj_L 120 DLGVYYCFQ-ASLVPL-TFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV 197 (252)
T ss_dssp GCEEEEEEE-CSBSSC-EECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSE
T ss_pred cCEEEEEEE-EcCCcc-EECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCe
Confidence 999999999 665321 112223566643 455543 222233468999999999874 544 79999999887532
Q ss_pred CCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 250 QGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
..........++. ...+.|.|.++..+|+|.|+|.|.|....
T Consensus 198 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 198 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred eeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 1111111001111 13467999999999999999999998743
No 227
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.80 E-value=2.6e-18 Score=137.21 Aligned_cols=209 Identities=11% Similarity=0.064 Sum_probs=107.3
Q ss_pred CceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL 98 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~ 98 (323)
.+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+....... ..........|.|.+++ |+|.|+|.+.
T Consensus 7 kP~i~~~P~~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 7 KPSLLAHPGPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIG----EHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCEECCBSCSEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEEC----BCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCEEEEcCCCEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceeee----eccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 3444444446789999999999964 457899999998765421000 00001223456666554 4999999997
Q ss_pred ccCC-------ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 99 FIPR-------MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 99 ~~~~-------~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
+... ++.+.. .+...+. ..+.+|++++|.|.+.+.+ ..+.|+|+|..+..... .....
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~~~~-~~~~~ 156 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY----DMYHLSREGEAHERRFS-AGPKV 156 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC----SEEEEEETTSSCEECCB-CBCCS
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC----cEEEEEECCcccCcccc-ccccc
Confidence 5321 111111 1111222 1367899999999987754 58999999987654100 00000
Q ss_pred --eceeEEEEeeeecCCCeeEEEEEEcCCC---CCCCCceeeeeEEEecceeeeec--eeEEeeCCeEEEEEEEecCCCC
Q psy15235 163 --QSKDSITIRKTTVDDAGQYSCRLIDPKS---TNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPP 235 (323)
Q Consensus 163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~---~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~g~~~~l~C~~~g~p~~ 235 (323)
.....|.|.+++ |+|.|+|.+ .+.. .....+..+.|.|..+|....+. ......|..+.|.|.+ |.+.+
T Consensus 157 ~~~~~~~l~I~~v~--D~G~Y~C~a-~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~ 232 (257)
T 1b6u_A 157 NGTFQADFPLGPAT--HGGTYRCFG-SFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLI 232 (257)
T ss_dssp SSCCBEEEEEEECC--SCEEEEEEE-ECSSCTTBBCCCCCCEEECCBCCC------------------------------
T ss_pred CCceeEEEEecccc--cCEEEEEEE-EcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHH
Confidence 236789999998 999999999 5432 12344566778888777554221 2234568899999877 45577
Q ss_pred cEEEEECCe
Q psy15235 236 TVEWRIGND 244 (323)
Q Consensus 236 ~~~W~~~~~ 244 (323)
.+.|...+-
T Consensus 233 ~~~~~~~~~ 241 (257)
T 1b6u_A 233 SEEDLNLDL 241 (257)
T ss_dssp ---------
T ss_pred HHHHhhhhh
Confidence 899986553
No 228
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.80 E-value=4.1e-18 Score=130.02 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=104.8
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF 99 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~ 99 (323)
+.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+...... . ........|.|.+++ |+|.|+|.+.+
T Consensus 5 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~-~-----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 5 PFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-P-----PERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-S-----CTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CEEEeecCCcCCCCCCEEEEEecCCCCCEEEEEECCCcccccccc-c-----CCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 3444333337899999999999654 4689999999876542100 0 011233456666654 49999999976
Q ss_pred cCC----ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEecee
Q psy15235 100 IPR----MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166 (323)
Q Consensus 100 ~~~----~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+ +..+.. .+...+ ...+.+|+.++|.|.+.+.+ +.+.|+|+|..+.. .........
T Consensus 79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~~~ 149 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV----QRGYGKVQA 149 (188)
T ss_dssp TTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSSC----SEEEEEEESSSCEE----EEEECSSEE
T ss_pred CCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCCC----CEEEEEECCccccc----cccCCCcee
Confidence 432 111111 111122 23467899999999987643 58999999977653 111224567
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCC-CCCCCceeeeeEE
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKS-TNTTPLAQADFDV 203 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v 203 (323)
.|.|.+++.+|+|.|+|.+ .+.. .....+..+.|.|
T Consensus 150 ~L~I~~v~~~d~G~Y~C~a-~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 150 EFPLGPVTTAHRGTYRCFG-SYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp EEEEEECCGGGCEEEEEEC-EEETTEECCCCCCEEEEE
T ss_pred EEEECCCCcCCCcEEEEEE-EcCCCcCCCCCCcEEEEe
Confidence 8999999999999999999 5442 1123344555544
No 229
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.80 E-value=1.1e-18 Score=137.60 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=113.9
Q ss_pred eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235 29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN 104 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~ 104 (323)
....+.+|+++.|.|.+ .+.+.+.|+++|..+......... ....+...|.|.+++ |+|.|+|.+.+..+..
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~ 102 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY----KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 102 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCC----EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccce----eeecCcceEEEecCCcccCEEEEEEEecccCcc
Confidence 45678999999999994 467799999999887654222111 122333456666554 4999999998776554
Q ss_pred ceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----CCeeccccccccCcEE-----
Q psy15235 105 AITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----GNKSITEATELSGRLT----- 162 (323)
Q Consensus 105 ~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----~~~~~~~~~~~~~~~~----- 162 (323)
.....+.+ .+....+..|+.+.|.|.+.+.+ .+.+.|++ +|..+...........
T Consensus 103 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (231)
T 3ojm_B 103 NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179 (231)
T ss_dssp EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSS---CCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCC---CCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence 22222222 13344577899999999999988 67999999 6766543111000000
Q ss_pred --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
.....|.|.++..+|+|.|+|.+ .|..+ .....+.|.|..+|
T Consensus 180 ~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p 223 (231)
T 3ojm_B 180 NSSNAEVLALFNVTEADAGEYICKV-SNYIG--QANQSAWLTVLPKQ 223 (231)
T ss_dssp TCSCTTEEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEECCC
T ss_pred ccCCccEEEEecCCHHHCeEEEEEE-Eeccc--eEeeEEEEEEecCC
Confidence 23457999999999999999999 77733 34666777777655
No 230
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.80 E-value=4.1e-18 Score=129.57 Aligned_cols=158 Identities=19% Similarity=0.255 Sum_probs=105.5
Q ss_pred eEEecCCcEEEEEEec--cCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-c
Q psy15235 31 TEIMEGAPINISCILT--IFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN-A 105 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~~--~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~-~ 105 (323)
..+.+|++++|.|.+. +.+ .+.|+++|..+..... ......+.+....|+|.|+|.+.+..... .
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~----------~~~~~~l~i~~~~d~G~Y~C~~~n~~~~~~~ 77 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----------PGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN 77 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----------CCSEEEEEECGGGCCEEEEEEEESTTSCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc----------cCCcEEEEEechhhCeEEEEEEECCcCcEEE
Confidence 5678999999999944 444 8999999987766411 12234556666667999999998632211 1
Q ss_pred e----eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE---CCeeccccccccCcEE----eceeEEEEeeee
Q psy15235 106 I----TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK---GNKSITEATELSGRLT----QSKDSITIRKTT 174 (323)
Q Consensus 106 ~----~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~---~~~~~~~~~~~~~~~~----~~~~~l~i~~~~ 174 (323)
+ .|.+...+....+.+|+.++|.|.+.+.|+ .+.+.|++ ++..+.. .....++. .....|.|.+++
T Consensus 78 l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~ 154 (184)
T 3b5h_A 78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALM-NGSESRFFVSSSQGRSELHIENLN 154 (184)
T ss_dssp EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECC-TTGGGTEEEEEETTEEEEEECSCC
T ss_pred EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCC--CCeEEEEEcCCCCCEEee-cCCCCEEEEEecCCeeEEEEeecc
Confidence 1 122222344455788999999999998874 47999999 4443322 01124443 334689999999
Q ss_pred -cCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 175 -VDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 175 -~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.+|+|.|+|.+ .|..+. ....+.|.|.
T Consensus 155 ~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V~ 182 (184)
T 3b5h_A 155 MEADPGQYRCNG-TSSKGS--DQAIITLRVR 182 (184)
T ss_dssp TTTSSEEEEEEE-EETTEE--EEEEEEEEEC
T ss_pred ccccCceEEEEE-EeCCCc--ceEEEEEEEe
Confidence 89999999999 777433 3444555543
No 231
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.80 E-value=3.8e-18 Score=133.90 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=111.8
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEEe------ceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLTQ------SKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~~------~~~~l~i~~~ 173 (323)
....+.+|++++|.|.+.+.+.. .+.+.|||.. .. +.. ...+.+|+.. ....|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFS-GYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCEEEcCCCcEEEEEEecCcccC-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 44567899999999999875411 3689999843 21 100 0123456651 2468999999
Q ss_pred ecCCCeeEEEEEEcCCCC----CCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEE-
Q psy15235 174 TVDDAGQYSCRLIDPKST----NTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRI- 241 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~- 241 (323)
+.+|+|.|.|.+ .+..+ .........|.|.. +|.+. ..+...+.+|+.++|.|.+.|. |.+ .+.|++
T Consensus 87 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 87 RAEDTAVYYCAK-VKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CGGGCEEEEEEE-ESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHCEEEEEEE-eccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 999999999999 55421 00111234666763 44444 2223345689999999999876 777 899999
Q ss_pred CCeeeeccCCeeeeecCCCCCCcceeEEEeecCc--CCCeEEEEEEeecccC
Q psy15235 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM--ADRGNYYCHGNNVATR 291 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~d~G~y~C~a~n~~g~ 291 (323)
+|..+... ...............+.|+|..... +|.|.|+|.|.|..|.
T Consensus 166 ~g~~l~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~ 216 (223)
T 1dee_B 166 NNSDISST-RGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN 216 (223)
T ss_dssp TSCBCSCE-EECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred CCCcccee-EECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence 88776420 0000000000011246788988876 7899999999999865
No 232
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.80 E-value=1.3e-18 Score=136.30 Aligned_cols=172 Identities=20% Similarity=0.319 Sum_probs=110.8
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc------------cccccCcEE------eceeEEEE
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE------------ATELSGRLT------QSKDSITI 170 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~------------~~~~~~~~~------~~~~~l~i 170 (323)
|....+.+|++++|.|.+.+.+.. .+.+.|+|++ .. +.. ...+.+|+. .....|.|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFS-NYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred cCCEEEcCCCeEEEEEEEcCCccC-CccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 444568889999999999875421 4689999853 21 100 011234554 12358999
Q ss_pred eeeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEEC
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIG 242 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~ 242 (323)
.+++.+|+|.|.|.+ .+..+.. .......|.|.. +|.+. .++...+.+|+.++|.|.+.|. |.| .+.|+++
T Consensus 86 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 164 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTR-GGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG 164 (220)
T ss_dssp CSCCGGGCEEEEEEE-ECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ccCCHHHCEEEEEEE-ecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence 999999999999999 6652111 111234566652 45444 2323345789999999999887 888 9999998
Q ss_pred Ceeeec-cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 243 NDTYFR-SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 243 ~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+..... ...... . .......+.|.|.++..+| |.|+|.|.|..|.
T Consensus 165 ~~~~~~~~~~~~~-~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 210 (220)
T 1pz5_B 165 ALSSGVRTVSSVL-Q--SGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK 210 (220)
T ss_dssp TCCTTEEECCCEE-E--TTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred CcccceEEcCCcc-c--CCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence 763100 000000 0 0000135789999998866 9999999999965
No 233
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.79 E-value=6.5e-19 Score=143.84 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=122.1
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+...+....+.+|+.++|.|.+.+ .+.|++++..... .........|.|.+++.+|+|.|+|.+ .+
T Consensus 6 ~i~~~~~~~~v~~G~~v~L~C~~~~-------~v~W~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~ 72 (289)
T 3ejj_X 6 VIEPSGPELVVEPGETVTLRCVSNG-------SVEWDGPISPYWT-----LDPESPGSTLTTRNATFKNTGTYRCTE-LE 72 (289)
T ss_dssp EEESCSSEEEECTTCCEEEEEECSS-------CCEEECSCSSSSE-----ECCCSSCCEEEESSCCGGGCEEEEEEC-CC
T ss_pred EecCCCceEEECCCCCEEEEEEeCC-------cEEEccCCCceEE-----EeccCCccEEEEeeeccccCEEEEEEE-ec
Confidence 3444556667889999999998865 3899987643221 111145678999999999999999999 66
Q ss_pred CCCCCCCceeeeeEEEecce--eeeeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235 189 KSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTAN 265 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
..+ .....+.|.|..+|. ...+....+.+|+.+.|.|.+.+.|.+. +.|++.+........++... ..
T Consensus 73 ~~~--~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-------~~ 143 (289)
T 3ejj_X 73 DPM--AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS-------PW 143 (289)
T ss_dssp -------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE-------TT
T ss_pred cCC--cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC-------CC
Confidence 633 356677777776553 3345567788999999999998876665 99987444433344555554 35
Q ss_pred eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
..|.|.++..+|+|.|+|.|.|..+ +.....+.|.|.+
T Consensus 144 ~~L~i~~v~~~d~G~Y~C~a~~~~~---~~~~~~~~l~V~~ 181 (289)
T 3ejj_X 144 RGFIIRKAKVLDSNTYVCKTMVNGR---ESTSTGIWLKVNR 181 (289)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTE---EEECCCEEEEEES
T ss_pred CCEEEeecccccCEEEEEEEEeCCC---ccccccEEEEEEE
Confidence 6799999999999999999994331 2355667777764
No 234
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.79 E-value=3.4e-18 Score=136.37 Aligned_cols=172 Identities=16% Similarity=0.273 Sum_probs=112.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
.|....+.+|++++|.|.+.+.++. ..+.+.|+|+. .... . ......|+. .....|.|.+++.+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 86 (247)
T 1svz_A 7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE 86 (247)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHH
Confidence 4566678899999999999876520 03789999842 2111 0 001134554 23458999999999
Q ss_pred CCeeEEEEEEcCCCCCCCCceeeeeEEEecc--------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEE
Q psy15235 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWR 240 (323)
Q Consensus 177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~ 240 (323)
|+|.|.|.+ .+..+. .......|.|..++ .+..+....+.+|++++|.|.+.+.| .+.+.|+
T Consensus 87 D~G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~ 164 (247)
T 1svz_A 87 DLGIYYCFQ-GSHFPP-TFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWV 164 (247)
T ss_dssp GCEEEEEEE-CSSSSC-EECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred HCEEEEEEE-ccCCcc-EECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEE
Confidence 999999999 665321 11223456665432 23344455688999999999998875 4689999
Q ss_pred ECC--eeee-----c-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 241 IGN--DTYF-----R-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 241 ~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
+++ ..+. . ...++.+... ......+|+|.+++.+|+|.|+|.|.|.
T Consensus 165 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 165 KQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD--TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe--cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 963 2110 0 1234433310 0113468999999999999999999996
No 235
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.79 E-value=1.3e-18 Score=136.36 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=112.4
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEE------eceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~------~~~~~l~i~~~ 173 (323)
....+.+|++++|.|.+.+.+.. .+.+.|||.. .. +.. ...+.+|+. .....|+|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCeEecCCCcEEEEEEecCccCC-CceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 34668899999999999875421 3689999843 21 110 011245665 12468999999
Q ss_pred ecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceeeeeceeEEeeCCeEEEEEEEecC-CC--CcEEEEECCee
Q psy15235 174 TVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAKLVETLTVIEGEKLRLECLVVGS-PP--PTVEWRIGNDT 245 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~--~~~~W~~~~~~ 245 (323)
+.+|+|.|.|.+ .+..... .......|.|.. +|.+.......+..|+.++|.|.+.+. |. +.+.|++++..
T Consensus 87 ~~~DsG~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~ 165 (220)
T 2fbj_H 87 RSEDTALYYCAR-LHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD 165 (220)
T ss_dssp CGGGCEEEEEEE-EETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred ChhhCEEEEEEE-eccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence 999999999999 5542110 112234666653 345543333345689999999999876 76 68999999876
Q ss_pred eeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 246 YFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.......... .++ ....+.|.|.....+|.|.|+|.|.|..|.
T Consensus 166 ~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 166 ITTVNFPPALA--SGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP 210 (220)
T ss_dssp CEEEECCCEEC--SSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred cceEecCceEC--CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence 52110000000 111 112356999999999999999999999865
No 236
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.79 E-value=1.9e-19 Score=142.35 Aligned_cols=174 Identities=14% Similarity=0.279 Sum_probs=94.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++ .... .......++. .....|.|.+++.+|+
T Consensus 29 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 105 (233)
T 3bqu_C 29 SPASLSMSIGEKVTIRCITSTDI---DDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDV 105 (233)
T ss_dssp ECSBC-------CCEEEEEEEEE---SSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCC
T ss_pred cCCeEEEecCCCEEEEEecCCcC---CCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHC
Confidence 35555678899999999998876 5689999853 2110 0011123333 3345899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeecc-CC
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRS-QG 251 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~-~~ 251 (323)
|.|.|.+ .+..+.. ......+.|.. +|.+.. ++.....+|+.++|.|.+.|. |++ .+.|+++|..+... ..
T Consensus 106 G~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 183 (233)
T 3bqu_C 106 ADYYCLQ-SDNLPYT-FGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 183 (233)
T ss_dssp SEEEEEE-CSSSSCC-BCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred EEEEEEE-ecCCcee-ecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence 9999999 6653221 12223455553 455553 222233469999999999885 444 79999999876532 11
Q ss_pred eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
........++ ....+.|.|..+..+|.|.|+|.|.|....
T Consensus 184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 184 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred ecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 1111100111 123467999999999999999999998743
No 237
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.79 E-value=3.6e-18 Score=134.33 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=101.3
Q ss_pred eceEEecCCcEEEEEEeccC-----ceEEEEEcCccceeecc--------------Ccce-EEEeeeeCCeEEEEEeecc
Q psy15235 29 GDTEIMEGAPINISCILTIF-----EQVKWQLNGRNINQSSV--------------DSGF-AATANLTEDNFKYSIHEAI 88 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~~-----~~v~W~~~g~~~~~~~~--------------~~~~-~~~~~~~~~~~~l~i~~~~ 88 (323)
.++.+.+|++|+|.|.+.+. ..|+|+|++........ ..+. ........++..|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 45889999999999996432 26999997754322100 0011 1111223567788888876
Q ss_pred c--CcceEEEeeccCCccceeeeeee------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc
Q psy15235 89 L--ESGYVQSSLFIPRMNAITGNYDI------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR 160 (323)
Q Consensus 89 ~--~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~ 160 (323)
. +|.|+|.+.+..+.......+.+ .+....+.+|+.+.|.|.+.+..| .+.|+|++++..+..... ...
T Consensus 92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P--~p~i~W~k~~~~~~~~~~-~~~ 168 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYP--QPQIQWSNNKGENIPTVE-APV 168 (226)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBS--CCEEEEECTTSCBCCCEE-CCC
T ss_pred hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCC--CCEEEEEECCceEcCCCc-eEE
Confidence 5 99999999987766543333322 222334678999999999988533 789999996544332100 111
Q ss_pred EEece---eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 161 LTQSK---DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 161 ~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
..... ..+.+..++.+|+|.|+|.| .|..+. ......|.|.
T Consensus 169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a-~N~~g~--~~~~~~v~v~ 212 (226)
T 4f80_A 169 VADGVGLYAVAASVIMRGSSGEGVSCTI-RSSLLG--LEKTASISIA 212 (226)
T ss_dssp EECTTSCEEEEEEEEECC----CEEEEE-EETTTT--EEEEEEECCC
T ss_pred EECCCCcEEEEEEEEechhcCcEEEEEE-EeCCCC--eEEEEEEEEC
Confidence 11111 23345567789999999999 777433 3444455543
No 238
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.79 E-value=2.3e-18 Score=136.55 Aligned_cols=169 Identities=11% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEe
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSS 97 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~ 97 (323)
..+.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+...... . ........|.|.+++ |+|.|+|.+
T Consensus 6 ~kP~i~~~P~~~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~~-~-----~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 6 PKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-P-----PERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-S-----CTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEeeCCCccCCCCcEEEEEeeCCCCcEEEEEECCCcccccccc-c-----cCCcceeEEEecCCCcccCeEEEEEE
Confidence 344554433337999999999999653 4689999999776532000 0 011223456666554 599999999
Q ss_pred eccCC----ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEec
Q psy15235 98 LFIPR----MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQS 164 (323)
Q Consensus 98 ~~~~~----~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+..+ ++.+.. .+...+. ..+.+|+.++|.|.+.+.+ ..+.|+|+|..+.. .......
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~ 150 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV----QRGYGKV 150 (242)
T ss_dssp EETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTSC----SEEEEEECSSSCEE----EEEECSS
T ss_pred ecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCCC----CEEEEEECCCccCc----cccCCCc
Confidence 76422 121211 1111221 2467899999999987644 59999999976653 1111245
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCC-CCCCCceeeeeEEEe
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKS-TNTTPLAQADFDVIM 205 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~~ 205 (323)
...|.|.+++.+|+|.|+|.+ .+.. .....+..+.|.|..
T Consensus 151 ~~~l~I~~v~~~d~G~Y~C~a-~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 151 QAEFPLGPVTTAHRGTYRCFG-SYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp EEEEEEEECCGGGCEEEEEEE-EEETTEECCCCCCEEEEEEC
T ss_pred eEEEEeCCCccccCEEEEEEE-ECCCCcccCCCCCEEEEEec
Confidence 678999999999999999999 5442 123456667777765
No 239
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.79 E-value=1.7e-18 Score=133.71 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=105.4
Q ss_pred EEEe-eceEEecCCcEEEEEEeccC-------ceEEEEEcCccceeeccCcceEEEe-eeeCCeEEEEEeeccc--Ccce
Q psy15235 25 ITYF-GDTEIMEGAPINISCILTIF-------EQVKWQLNGRNINQSSVDSGFAATA-NLTEDNFKYSIHEAIL--ESGY 93 (323)
Q Consensus 25 i~~~-~~~~v~~G~~v~L~C~~~~~-------~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~--~G~Y 93 (323)
+..+ .++.+.+|+++.|.|.+.+. +.+.|+|++...... ..+..+.. ....+...|.|.+++. +|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~--~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ--SERATLLEEQLPLGKALFHIPSVQVRDSGQY 82 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB--CSSCEECGGGGGGTEEEEEECSCCGGGCEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc--CCceEEeeccccCCeeEEEECCCCHHHCcEE
Confidence 4334 46789999999999995443 689999944332221 11111111 1123556777777654 9999
Q ss_pred EEEeeccCCccceeeeeee-----CCcee--EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ec
Q psy15235 94 VQSSLFIPRMNAITGNYDI-----EPKYK--VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS 164 (323)
Q Consensus 94 ~C~~~~~~~~~~~~~~~~~-----~~~~~--~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~ 164 (323)
+|.+.+..+.......+.+ .|... .+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..... ..
T Consensus 83 ~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P---~p~v~W~~~~~~~~~----~~~~~~~~~ 155 (202)
T 3bp6_B 83 RCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP---LAEVSWQNVSVPANT----SHIRTPEGL 155 (202)
T ss_dssp EEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBS---CCEEEETTCCSCCEE----EEEECTTSC
T ss_pred EEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccC---CceEEEEeCCCCccC----ceeeCCCCC
Confidence 9999887665433333333 12222 245799999999999977 789999998876543 11111 22
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
...+.+..+..+|.|.|+|.| .|..+. ....+.|.|
T Consensus 156 ~~~~~i~~v~~~d~G~Y~C~a-~N~~g~--~~~~~~l~v 191 (202)
T 3bp6_B 156 YQVTSVLRLKPQPSRNFSCMF-WNAHMK--ELTSAIIDP 191 (202)
T ss_dssp EEEEEEEEECCCTTCCEEEEE-EETTTT--EEEEEEECC
T ss_pred EEEEEEEEEEcCCCCEEEEEE-EcCCcc--cccEEEEEe
Confidence 345667788899999999999 777443 333444443
No 240
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.79 E-value=2e-18 Score=134.28 Aligned_cols=168 Identities=13% Similarity=0.238 Sum_probs=108.9
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEcCccceeecc--------CcceEEEeeeeCCeEEEEEeec--ccCcceEE
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSV--------DSGFAATANLTEDNFKYSIHEA--ILESGYVQ 95 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C 95 (323)
+.++.+.+|+++.|.|.+. +.+.+.|++++..+..... ..... ..... .|.|.++ .|+|.|+|
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~--~L~i~~v~~~D~G~Y~C 82 (212)
T 1f97_A 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV---TFSSS--GITFSSVTRKDNGEYTC 82 (212)
T ss_dssp CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTE---EEETT--EEEESCCCGGGCEEEEE
T ss_pred CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcE---Eeece--eEEEcccCcccCeEEEE
Confidence 4567899999999999954 6789999998877432100 01111 11123 4555554 45999999
Q ss_pred EeeccCCc--cceeeeeee--CCce------eEEecCCcEEEEEE-eecCCCCCCceEEEEECCe-eccccccc-----c
Q psy15235 96 SSLFIPRM--NAITGNYDI--EPKY------KVFEYRVPFTLKCN-VTSPPPGDDYQIVWYKGNK-SITEATEL-----S 158 (323)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~--~~~~------~~~~~g~~v~l~C~-~~~~~~~~~~~i~W~~~~~-~~~~~~~~-----~ 158 (323)
.+.+..+. ......+.+ .|.. ..+..|+.++|.|. +.+.| .+.+.|++++. .+...... .
T Consensus 83 ~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~i~W~~~~~~~l~~~~~~~~~~~~ 159 (212)
T 1f97_A 83 MVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISMLTADAKKTRAFMN 159 (212)
T ss_dssp EEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS---CCEEEEEETTEESBC-----CBSCSS
T ss_pred EEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC---CCEEEEEeCCcccccccccccccccC
Confidence 99987552 222222222 2221 23678999999999 67777 68999999998 77652111 0
Q ss_pred CcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235 159 GRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 159 ~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
.++. .....|.|.++..+|+|.|+|.| .|..+....+..+.|.|.
T Consensus 160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQA-QNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SCEEECTTTCCEEESSCCGGGCEEEEEEE-ECSSSCCEECCCEEEEEE
T ss_pred ceeEecCCCceEEEEecChhhCcEEEEEE-ccccCCccccceEEEEEE
Confidence 1222 34678999999999999999999 787555433555555554
No 241
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.79 E-value=3.9e-19 Score=135.44 Aligned_cols=130 Identities=18% Similarity=0.334 Sum_probs=93.9
Q ss_pred EEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEee---cccCcceEEEeeccCCccceee
Q psy15235 32 EIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHE---AILESGYVQSSLFIPRMNAITG 108 (323)
Q Consensus 32 ~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~G~Y~C~~~~~~~~~~~~~ 108 (323)
.+.+|++++|.|.+.+.+.++|+|+|..+... .++ .|.|.+ ..|+|.|+|.+.+..+......
T Consensus 10 v~~~G~~v~L~C~~~~~~~i~W~k~g~~l~~~------------~~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~ 75 (186)
T 1jbj_A 10 VSISGTSVELTCPLDSDENLKWEKNGQELPQK------------HDK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYL 75 (186)
T ss_dssp EEEETTEEEEECSSCCCTTCEEEETTEEECSC------------CCS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEE
T ss_pred EEeCCcEEEEEEeCCCCCceEEEECCEECCCC------------CCC--EEEECCCCccccCEEEEEEEEeCCCcEEEEE
Confidence 35789999999997666679999999887663 122 355555 4559999999988766532221
Q ss_pred eeee----CCc--------------------------e---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc
Q psy15235 109 NYDI----EPK--------------------------Y---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT 155 (323)
Q Consensus 109 ~~~~----~~~--------------------------~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~ 155 (323)
.+.+ .+. . ..+.+|+++.|.|.+ | .+.|.|+|+|..+..
T Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p---~p~i~W~k~g~~i~~-- 147 (186)
T 1jbj_A 76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---T---DKTIKWLKDGSIISP-- 147 (186)
T ss_dssp CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---S---CSCEEEEETTEECCC--
T ss_pred EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---C---CCeEEEEECCEECcc--
Confidence 1111 000 0 123489999999988 4 579999999998864
Q ss_pred cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 156 ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 156 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.. .....|.|.++..+|+|.|+|.| .|.
T Consensus 148 --~~---~~~~~L~i~~v~~~D~G~Y~C~a-~N~ 175 (186)
T 1jbj_A 148 --LN---ATKNTWNLGNNAKDPRGTYQCQG-AKE 175 (186)
T ss_dssp --SS---CCSSCCEEEETTSCCEEEEEEEE-SSC
T ss_pred --cC---CCcceEEECCCCcCcCEEEEEEE-EcC
Confidence 11 14567999999999999999999 777
No 242
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.79 E-value=1.1e-17 Score=136.16 Aligned_cols=184 Identities=15% Similarity=0.229 Sum_probs=106.0
Q ss_pred CcchhHHHHHH-HHHHhhhccCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-------
Q psy15235 1 MSMIHLCLSLL-AIFVHQSISADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S------- 63 (323)
Q Consensus 1 m~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~------- 63 (323)
|.|+.+.+.++ +++......+...+..+.++.+.+|++|+|.|.+.+ .+.+.|+|++ ..+.. .
T Consensus 5 ~~m~~~~~ll~l~ll~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 84 (282)
T 1qok_A 5 MKYLLPTAAAGLLLLAAQPAMAQVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDT 84 (282)
T ss_dssp ----------------------CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEE
T ss_pred eeeccchHHHHHHHHhhccccceEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCcc
Confidence 66654433322 222233334566677888899999999999999542 4789999964 22210 0
Q ss_pred ----ccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC---cc------ceeee-------------------
Q psy15235 64 ----SVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR---MN------AITGN------------------- 109 (323)
Q Consensus 64 ----~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~---~~------~~~~~------------------- 109 (323)
....+.....+.......|.|.+++. +|.|+|.+.+..+ .. .+.+.
T Consensus 85 ~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~ 164 (282)
T 1qok_A 85 EYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENV 164 (282)
T ss_dssp EECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCC
T ss_pred ccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceE
Confidence 01122222222234567788887764 9999999987653 11 11111
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc--------cccccCcEE----eceeEEEEeeeec
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTV 175 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~ 175 (323)
+...+....+.+|++++|.|.+.+.+ +.+.|+| ++..+.. ......++. .....|.|.+++.
T Consensus 165 ~~~~p~~~~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 240 (282)
T 1qok_A 165 LTQSPAIMSASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA 240 (282)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EecCCCEEEEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence 11123344577899999999998876 3899999 5554311 001134443 2456899999999
Q ss_pred CCCeeEEEEEEcCC
Q psy15235 176 DDAGQYSCRLIDPK 189 (323)
Q Consensus 176 ~d~G~y~C~~~~~~ 189 (323)
+|+|.|+|.+ .+.
T Consensus 241 ~DsG~Y~C~a-~~~ 253 (282)
T 1qok_A 241 EDAATYYCQQ-RSS 253 (282)
T ss_dssp GGCEEEEEEE-CSS
T ss_pred hHCEEEEEEE-eeC
Confidence 9999999999 554
No 243
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.79 E-value=1.2e-17 Score=131.78 Aligned_cols=185 Identities=19% Similarity=0.242 Sum_probs=111.6
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE------eceeEEEEeeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT------QSKDSITIRKTT 174 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~------~~~~~l~i~~~~ 174 (323)
....+.+|++++|.|.+.+.+.. ...+.|||.. .... . ...+.+|+. .....|+|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEeCCCcEEEEEEEccccCC-CceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 34567889999999999875321 4689999842 2111 0 011245665 124589999999
Q ss_pred cCCCeeEEEEEEcCCCC--C--CCCceeeeeEEEe----cceeee-eceeEEeeC-CeEEEEEEEecC-CCC-cEEEEE-
Q psy15235 175 VDDAGQYSCRLIDPKST--N--TTPLAQADFDVIM----KPTAKL-VETLTVIEG-EKLRLECLVVGS-PPP-TVEWRI- 241 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~--~--~~~~~~~~l~v~~----~p~~~~-~~~~~~~~g-~~~~l~C~~~g~-p~~-~~~W~~- 241 (323)
.+|+|.|.|.+ .+..+ . ........|.|.. +|.+.. .+...+..| +.++|.|.+.|. |.+ .+.|++
T Consensus 87 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~ 165 (232)
T 1dn0_B 87 AADTAVYYCAR-PPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK 165 (232)
T ss_dssp GGGCEEEEEEE-CSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred cccCEEEEEEE-ecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence 99999999999 53111 1 0112234666654 344442 223334578 999999999875 776 899999
Q ss_pred CCeeeeccCCeeeeecCCCCCCcceeEEEeecCc--CCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM--ADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+|..+... ...............+.|+|..... +|.|.|+|.|.|..+. ......+.|.+
T Consensus 166 ~g~~l~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~----~~~~~~i~~~~ 227 (232)
T 1dn0_B 166 NNSDISST-RGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN----KEKNVPLPVIA 227 (232)
T ss_dssp TSCEECCE-EECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC----EEEEEECCC--
T ss_pred CCCceeeE-EECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC----cceeEecCCCC
Confidence 88776430 0000000000011246799998887 8899999999999955 55555555444
No 244
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.78 E-value=1.8e-18 Score=134.66 Aligned_cols=168 Identities=14% Similarity=0.244 Sum_probs=106.2
Q ss_pred eeceEEecCCcEEEEEEecc------CceEEEEEcCcc----------------cee--eccCcceEEEe-eeeCCeEEE
Q psy15235 28 FGDTEIMEGAPINISCILTI------FEQVKWQLNGRN----------------INQ--SSVDSGFAATA-NLTEDNFKY 82 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g~~----------------~~~--~~~~~~~~~~~-~~~~~~~~l 82 (323)
+..+.+.+|++++|.|.+.+ .+.+.|++++.. +.. .....+..+.. +...+...|
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 45678999999999999543 358999994321 110 00011111111 112345566
Q ss_pred EEeecc--cCcceEEEeeccCCccceeeeeee--CCcee------EEecCCcEEEEEEe-ecCCCCCCceEEEEECC--e
Q psy15235 83 SIHEAI--LESGYVQSSLFIPRMNAITGNYDI--EPKYK------VFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGN--K 149 (323)
Q Consensus 83 ~i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~------~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~--~ 149 (323)
.|.+++ |+|.|+|.+.+..+.......+.+ .|... .+..|+.++|.|.+ .+.| .+.+.|++++ .
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~~~~~ 163 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSL---PLQFEWQKLSDSQ 163 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCS---SCEEEEEECSTTC
T ss_pred EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCC---CCEEEEEECCCCC
Confidence 776665 499999999887655433333333 22211 25679999999999 6777 7899999954 3
Q ss_pred eccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235 150 SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
.+.. ..........|.|.++..+|+|.|+|.| .|..+ .....+.|.|..
T Consensus 164 ~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~g--~~~~~~~l~V~~ 212 (214)
T 3jz7_A 164 TMPT----PWLAEMTSPVISVKNASSEYSGTYSCTV-QNRVG--SDQCMLRLDVVP 212 (214)
T ss_dssp CCCG----GGGGGTTSSEEEECSCCGGGCEEEEEEE-ECSSC--EEEEEEEECCBC
T ss_pred ccCc----cceeccCCCEEEEecCCHHHCEEEEEEE-EcCCC--cEEEEEEEEEeC
Confidence 3332 1222234568999999999999999999 77743 345555555553
No 245
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.78 E-value=3.8e-18 Score=137.84 Aligned_cols=174 Identities=17% Similarity=0.274 Sum_probs=111.7
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------ccccc-CcEE-----eceeEEEEeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELS-GRLT-----QSKDSITIRKT 173 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~-~~~~-----~~~~~l~i~~~ 173 (323)
.+....+.+|++++|.|.+.. + .+.+.||| .+..... ..... +|+. .....|.|.++
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v 107 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPIS-G---HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRT 107 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCBT-T---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSC
T ss_pred CCCEEEecCCCCEEEEEEeCC-C---CceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCC
Confidence 566677889999999999863 4 57999998 2221110 00111 4554 23678999999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecCCC-C-cEEEEECC
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGSPP-P-TVEWRIGN 243 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~-~-~~~W~~~~ 243 (323)
+.+|+|.|.|.+ .+............+.|.. +|.+.. +....+.+|+.++|.|.+.|.|+ + .+.|+++|
T Consensus 108 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g 186 (268)
T 3pl6_D 108 ERGDSAVYLCAT-SALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 186 (268)
T ss_dssp CGGGCEEEEEEE-ESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESS
T ss_pred CcccCEEEEEEE-ecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECC
Confidence 999999999999 5531122233344566654 444332 22233456999999999988654 4 89999999
Q ss_pred eeeeccCCeee-----eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 244 DTYFRSQGRIK-----LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 244 ~~~~~~~~~~~-----~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
..+........ .....++ ....+.|.|.....+| .|.|+|.|.|....
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 187 KEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp SEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 88753211100 0000001 1124678888888888 99999999998754
No 246
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.78 E-value=3.3e-18 Score=133.32 Aligned_cols=172 Identities=12% Similarity=0.084 Sum_probs=105.5
Q ss_pred eeceEEecC--CcEEEEEEec-cCceEEEEEc---CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235 28 FGDTEIMEG--APINISCILT-IFEQVKWQLN---GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP 101 (323)
Q Consensus 28 ~~~~~v~~G--~~v~L~C~~~-~~~~v~W~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~ 101 (323)
+..+.+.+| ++++|.|.+. |.+.++|+++ |..+... ..+..+ ....+.|......|+|.|+|.+.+..
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~-----~~~~~~-~~~~l~I~~v~~~D~G~Y~C~a~n~~ 87 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG-----NRISWD-SKKGFTIPSYMISYAGMVFCEAKIND 87 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCS-----SSCEEE-TTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred ceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCC-----Cccccc-CCccEEEccCChhcCceEEEEEEECC
Confidence 467889999 9999999954 5689999985 4444332 111111 13334444444455999999998743
Q ss_pred Ccc-----ce------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc---ccC--c---E
Q psy15235 102 RMN-----AI------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE---LSG--R---L 161 (323)
Q Consensus 102 ~~~-----~~------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~---~~~--~---~ 161 (323)
... .+ .+.+.+ .+....+.+|++++|.|.+.+.++. .+.+.|++++..+..... ... . .
T Consensus 88 ~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (213)
T 2x1w_L 88 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 166 (213)
T ss_dssp -CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTB-CCEEEEECSCSSCCSEEEEEEEECCCSSCSC
T ss_pred eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCC-ceEEEEEecCCccceEEEeccccccccCccc
Confidence 321 11 112222 2233367889999999999985421 358999998876432100 000 0 0
Q ss_pred EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235 162 TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209 (323)
Q Consensus 162 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~ 209 (323)
......|.|.+++.+|+|.|+|.| .|.. +.....+.|.|..+|.+
T Consensus 167 ~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~--g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 167 KKFLSTLTIDGVTRSDQGLYTCAA-SSGL--MTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEEEEEEESSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEEEC----
T ss_pred eeeeEEEEECCCCcccCEEEEEEE-ecCC--CcEEEEEEEEEeccccc
Confidence 123457999999999999999999 7774 34577778888877765
No 247
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.78 E-value=5e-18 Score=130.69 Aligned_cols=157 Identities=10% Similarity=0.043 Sum_probs=95.3
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP 101 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~ 101 (323)
+.+.......+.+|++++|.|.+.+ ...+.|+|+|..+....... ........+.|......|+|.|+|.+.+..
T Consensus 6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 6 PTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIP----QELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CEEEEESCSEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSC----HHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CeEeccCCCcccCCCcEEEEEEecCCCcEEEEEECCcccccccccc----ccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 3444444457899999999999543 34799999998775321000 001123333333334455999999998765
Q ss_pred -C--c--cceeeee---------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---ec
Q psy15235 102 -R--M--NAITGNY---------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QS 164 (323)
Q Consensus 102 -~--~--~~~~~~~---------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~ 164 (323)
+ . ..+...+ ...+. ..+.+|+.++|.|.+.+.+ +.+.|+|+|..+..... ..... ..
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~~----~~v~W~k~g~~~~~~~~-~~~~~~~~~~ 155 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVAF----DGFILCKEGEDEHPQCL-NSQPHARGSS 155 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSCC----SEEEEEEC------CEE-EC------CC
T ss_pred CCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCCC----cEEEEEECCCccCCccc-cccccCCCcc
Confidence 2 1 1111111 11111 3467899999999998874 59999999987643100 00011 23
Q ss_pred eeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 165 KDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 165 ~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
...|.|.+++.+|+|.|+|.| .|..
T Consensus 156 ~~~L~i~~v~~~D~G~Y~C~a-~n~~ 180 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYRCYA-YDSN 180 (198)
T ss_dssp EEEEEECCCCTTSCEEEEEEE-ECTT
T ss_pred eeEEEecccCcccCeEEEEEE-EeCC
Confidence 578999999999999999999 6653
No 248
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.78 E-value=7.3e-18 Score=132.12 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=110.5
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---------------ccccccCcEE------eceeEEEE
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---------------EATELSGRLT------QSKDSITI 170 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---------------~~~~~~~~~~------~~~~~l~i 170 (323)
+....+.+|++++|.|.+.+.+.. ...+.|||.. .... ....+.+|+. .....|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLS-GSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred cCCEEEcCCCCEEEEEEccccccc-ccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 334568889999999999874311 4699999832 1110 0111235554 22447999
Q ss_pred eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CCC-C-cEEEEEC
Q psy15235 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SPP-P-TVEWRIG 242 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~-~-~~~W~~~ 242 (323)
.+++.+|+|.|.|.+ .+............+.|. .+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|+++
T Consensus 86 ~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~ 163 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVI-RGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSES 163 (221)
T ss_dssp CSCCGGGCEEEEEEE-ESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred CCCCHHHCEEEEEEE-ECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence 999999999999999 554211122333455654 234444 222223 68999999999987 676 4 8999999
Q ss_pred CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+..+...................+.|+|.....+|.|.|+|.|.|..+.
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 8766321110000000000112357999999999999999999998844
No 249
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.78 E-value=9.5e-18 Score=135.05 Aligned_cols=173 Identities=15% Similarity=0.263 Sum_probs=113.7
Q ss_pred eCCceeEEecCCcEEEEEEeecCCCC---CCceEEEEEC--Ceecc---c-----cccccCcEE----eceeEEEEeeee
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVTSPPPG---DDYQIVWYKG--NKSIT---E-----ATELSGRLT----QSKDSITIRKTT 174 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~~~~~~---~~~~i~W~~~--~~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~ 174 (323)
..|....+.+|++++|.|.+.+.++. ..+.+.|+|+ +..+. . ......|+. .....|.|.+++
T Consensus 10 q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~ 89 (264)
T 2gjj_A 10 QTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVK 89 (264)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred ecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCC
Confidence 35666678899999999999876510 0368999985 22111 0 001234554 235689999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc--------------------eeeeeceeEEeeCCeEEEEEEEecCCC
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------------TAKLVETLTVIEGEKLRLECLVVGSPP 234 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~ 234 (323)
.+|+|.|.|.+ .+.... .......|.|..+| .+..++...+.+|++++|.|.+.+.|.
T Consensus 90 ~~DsG~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~ 167 (264)
T 2gjj_A 90 AEDLAVYYCQQ-YSNYPW-TFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSF 167 (264)
T ss_dssp GGGCEEEEEEE-CSSSSC-EECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred HHHCEEEEEEE-ecCCcc-EecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCcc
Confidence 99999999999 665221 11223466666542 222334457889999999999988764
Q ss_pred --CcEEEEECC--ee---ee---c----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 235 --PTVEWRIGN--DT---YF---R----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 235 --~~~~W~~~~--~~---~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
+.+.|+++. .. +. . ...++.+... .......|+|.+++.+|+|.|+|.|.|.
T Consensus 168 ~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 168 TGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD--TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp GGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc--CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 789999963 21 11 0 0223333211 1113578999999999999999999995
No 250
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.78 E-value=5.1e-19 Score=139.88 Aligned_cols=164 Identities=14% Similarity=0.198 Sum_probs=85.3
Q ss_pred CCceEEE-eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEee
Q psy15235 21 ADGKITY-FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHE 86 (323)
Q Consensus 21 ~~~~i~~-~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~ 86 (323)
....+.. +..+.+.+|++|+|.|.+. +.+.+.|+|++ ..+... ....+ +......+...|.|.+
T Consensus 22 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~ 99 (233)
T 3bqu_C 22 AETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSR--FSSSGYGTDFVFTIEN 99 (233)
T ss_dssp -CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTT--CCCCEEEEEEEEC---
T ss_pred cceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCcc--EEeeccCCEEEEEECC
Confidence 3444554 6778899999999999943 45789999954 222110 00111 1111123445666666
Q ss_pred cc--cCcceEEEeeccCCcc-----ceeeeeee-CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235 87 AI--LESGYVQSSLFIPRMN-----AITGNYDI-EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 87 ~~--~~G~Y~C~~~~~~~~~-----~~~~~~~~-~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~ 152 (323)
++ |+|.|+|.+.+..+.. .+.+.... .|.+.. ...|++++|.|.+.+.+|. ...+.|+++|..+.
T Consensus 100 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~ 178 (233)
T 3bqu_C 100 MLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQ 178 (233)
T ss_dssp --CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CEEEEEEEC-----
T ss_pred CCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCC-ceEEEEEECCeeCC
Confidence 54 5999999998754321 11111000 222222 1248999999999986541 24899999998775
Q ss_pred cc-cc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 153 EA-TE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 153 ~~-~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.. .. .++.+ .....|.|.....+|+|.|+|.| .|.
T Consensus 179 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~ 221 (233)
T 3bqu_C 179 NGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THK 221 (233)
T ss_dssp CCEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCCEEEEE-EEC
T ss_pred CCceEecCCccCCCCCE-EEEEEEEECHHHhCCCCCEEEEE-EeC
Confidence 42 00 00111 23356889988889999999999 665
No 251
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.78 E-value=1.1e-18 Score=131.67 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=95.7
Q ss_pred ceEEecCCcEEEEEEe----ccCceEEEEEcCccceeecc------CcceEEEeeeeCCeEEEEEeec--ccCcceEEEe
Q psy15235 30 DTEIMEGAPINISCIL----TIFEQVKWQLNGRNINQSSV------DSGFAATANLTEDNFKYSIHEA--ILESGYVQSS 97 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~----~~~~~v~W~~~g~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~ 97 (323)
.+.+.+|++|+|.|.. .+.+.+.|+|++..+..... ..++ +.. ..++. |.|.++ .|+|.|+|.+
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r-~~~-~~~gs--L~I~~v~~~D~G~Y~C~~ 80 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGA-FEI-LANGD--LKIKNLTRDDSGTYNVTV 80 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTT-EEE-CTTSC--EEESSCCGGGCEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCe-EEE-CCCCc--EEEcccccccCEEEEEEE
Confidence 4668899999999952 23568999999876542110 1111 111 12344 555555 4599999999
Q ss_pred eccCCcc--ceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235 98 LFIPRMN--AITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172 (323)
Q Consensus 98 ~~~~~~~--~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 172 (323)
.+..+.. .....+.+ .....+...+..++|.|.+.+.| .+.|.|+++|..+.. .. .+.|..
T Consensus 81 ~n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p---~p~i~W~~~g~~l~~----~~-------~~~i~~ 146 (176)
T 1hng_A 81 YSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS----LR-------QKTMSY 146 (176)
T ss_dssp EETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEETTEEEEE----ES-------SSEEEE
T ss_pred EeCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCC---CcEEEEEECCEECCC----CC-------cEEEEE
Confidence 9877664 22233333 12233444466799999999988 689999999988865 11 245567
Q ss_pred eecCCCeeEEEEEEcCCC
Q psy15235 173 TTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~ 190 (323)
+..+|+|.|+|.| .|..
T Consensus 147 ~~~~d~G~Y~C~a-~N~~ 163 (176)
T 1hng_A 147 QWTNLRAPFKCKA-VNRV 163 (176)
T ss_dssp ECSCCSSCEEEEE-EETT
T ss_pred EEccCCeEEEEEE-EecC
Confidence 8899999999999 7774
No 252
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.78 E-value=1.7e-17 Score=133.74 Aligned_cols=164 Identities=15% Similarity=0.192 Sum_probs=117.2
Q ss_pred EEecCCcEEEEEEeecCCCCCCc--eEEEEECCeeccccccccCcEEeceeEEEEeee---ecCCCee--EEEEEEcCCC
Q psy15235 118 VFEYRVPFTLKCNVTSPPPGDDY--QIVWYKGNKSITEATELSGRLTQSKDSITIRKT---TVDDAGQ--YSCRLIDPKS 190 (323)
Q Consensus 118 ~~~~g~~v~l~C~~~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~C~~~~~~~ 190 (323)
.+.+|+.++|.|.+.+..| .+ .|.|++++..+.. ........+.+..+ +.+|+|. |+|.+ .+..
T Consensus 14 ~v~~G~~v~l~C~~~g~~p--~p~~~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a-~n~~ 84 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFP--VSEAQVHLALGDQRLNP------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAV-ILGN 84 (265)
T ss_dssp EEETTEEEEEEEEEESCSC--GGGCEEEEEETTEECCC------EEEECSSEEEEEEEEEECGGGCEEEEEEEEE-EETT
T ss_pred eEecCCCEEEEEEccCCCC--CcceEEEEEeCCEECCc------eEeeCCCeEEEEeecccccccCCcceEEEEE-ecCC
Confidence 5778999999999998332 45 9999999988754 22222335555554 6788885 99999 6663
Q ss_pred CCCCCceeeeeEEEe--cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235 191 TNTTPLAQADFDVIM--KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268 (323)
Q Consensus 191 ~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 268 (323)
+ .......|.|.. +|.+. .....+.+|+.+.|.|.+. |.+.+.| +|..+.... ....|
T Consensus 85 ~--~~~~~~~l~V~~~p~p~~~-~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-------------~~~~l 144 (265)
T 2oz4_A 85 Q--SQETLQTVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-------------PRAQL 144 (265)
T ss_dssp E--EEEEEEEEEEECCCCCEEE-ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS-------------SEECC
T ss_pred C--CcEEEEEEEEeCCCCceee-cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC-------------CcEEE
Confidence 3 345667777765 34444 3356678899999999998 8899999 776652111 25678
Q ss_pred EEeecCcCCCeEEEEEEeecc-cCCCCCceeEEEEEEcceecCc
Q psy15235 269 QIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 269 ~i~~v~~~d~G~y~C~a~n~~-g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
.|..+..+|.|.|+|.|.|.. |. .......+.|.|..+|...
T Consensus 145 ~i~~~~~~~~g~Y~C~a~n~~~g~-~~~~s~~~~l~V~~~p~~~ 187 (265)
T 2oz4_A 145 LLKATPEDNGRSFSCSATLEVAGQ-LIHKNQTRELRVLYGPRLD 187 (265)
T ss_dssp EEECCGGGTTEEEEEEEEEECSSS-EEEEEEEEEEEEEEEEECC
T ss_pred EEccccccCCceEEEEEEcCCCCC-cccccccEEEEEEeCCccc
Confidence 899999999999999998654 44 1122367788888777653
No 253
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.78 E-value=7.6e-18 Score=134.17 Aligned_cols=172 Identities=17% Similarity=0.308 Sum_probs=109.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--------------Ceecccccccc-CcEE-----eceeEEEEee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--------------NKSITEATELS-GRLT-----QSKDSITIRK 172 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--------------~~~~~~~~~~~-~~~~-----~~~~~l~i~~ 172 (323)
.|....+.+|++++|.| ..+.+ .+.+.|||. +..... .... +|+. .....|.|.+
T Consensus 8 ~p~~v~v~~G~~v~L~C-~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~ 82 (245)
T 4ei6_B 8 IPSHQIIDMGQMVTLNC-DPVSN---HLYFYWYKQILGQQMEFLVNFYNGKVMEK-SKLFKDQFSVERPDGSYFTLKIQP 82 (245)
T ss_dssp ECSEEEEETTCCEEEEE-ECCTT---CCEEEEEEEETTTEEEEEEEEETTEEEEE-CTTCCTTEEEECCTTSCEEEEECS
T ss_pred CCceEEecCCCCEEEEE-EcCCC---CCEEEEEEECCCCCcEEEEEECCCceecc-CCCccCCEEEEeccCceEEEEECC
Confidence 45666788999999999 55555 679999981 111111 1111 5554 2345899999
Q ss_pred eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecC-CCC-cEEEE
Q psy15235 173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGS-PPP-TVEWR 240 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~ 240 (323)
++.+|+|.|.|.+ .+... .........+.|.. +|.+.. +....+.+|+.++|.|.+.|. |++ .+.|+
T Consensus 83 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 83 TALEDSAVYFCAS-SFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp CCGGGCEEEEEEE-ECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCHhHCEEEEEEE-ccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 9999999999999 54211 11222344566652 444432 222334569999999999884 555 89999
Q ss_pred ECCeeeeccCCeeeee---cC-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 241 IGNDTYFRSQGRIKLS---EH-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 241 ~~~~~~~~~~~~~~~~---~~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
++|..+.... +.... .. . .++ ...+.|.|.....+| .|.|+|.|.|....
T Consensus 162 ~~g~~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 162 VNGKEVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp ETTEEECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred ECCEECCCCc-ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 9998875321 11100 00 0 011 123568999998888 89999999998744
No 254
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.78 E-value=9e-18 Score=134.92 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=105.6
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cccc----------ccc-CcEE-----eceeEE
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TEAT----------ELS-GRLT-----QSKDSI 168 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~~~----------~~~-~~~~-----~~~~~l 168 (323)
+...+....+.+|++++|.|.+.+.+ .+.+.|||. +... .... ... .++. .....|
T Consensus 5 v~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 5 LEGRTKSVIRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ------CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred cccCCceeEecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 33355666788999999999998877 679999982 2111 0000 001 1111 234579
Q ss_pred EEeeeecCCCeeEEEEEEcCCCCC-CCCceeeeeEEEec-----------------ceee-eeceeEEeeCCeEEEEEEE
Q psy15235 169 TIRKTTVDDAGQYSCRLIDPKSTN-TTPLAQADFDVIMK-----------------PTAK-LVETLTVIEGEKLRLECLV 229 (323)
Q Consensus 169 ~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~-----------------p~~~-~~~~~~~~~g~~~~l~C~~ 229 (323)
.|.+++.+|+|.|.|.+ .+..+. ........|.|..+ |.+. .+....+.+|++++|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCAT-WDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEE-ECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEE-eeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999 555321 12233445666552 2333 3445778999999999999
Q ss_pred ecC-CCCcEEEEECCe--eee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 230 VGS-PPPTVEWRIGND--TYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 230 ~g~-p~~~~~W~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
.+. |.+.+.|++++. .+. ...+++.+. .........|+|.+++.+|+|.|.|.+.+.
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVN--FKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEEC--CBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEE--EcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 775 778999998431 111 011333333 111123567999999999999999999853
No 255
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.78 E-value=6.3e-18 Score=130.62 Aligned_cols=140 Identities=15% Similarity=0.284 Sum_probs=95.5
Q ss_pred EecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccceeeeee-
Q psy15235 33 IMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYD- 111 (323)
Q Consensus 33 v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~~~~~- 111 (323)
+.+|++|+|.|.+ +.+.++|+|+|..+... ....+.+.|......|+|.|+|.+.+.. +..+...+.
T Consensus 15 ~~~G~~v~L~C~~-p~~~i~W~k~g~~l~~~----------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s~~~~v~v~~ 82 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-EAKNITWFKDGKMIGFL----------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-SKPLQVYYRM 82 (204)
T ss_dssp CCSSSEEEEEECS-CSSEEEEEETTEEEEEE----------ESSCCCEEEEEGGGCCEEEEEEESSSSC-CCCEEEEEEC
T ss_pred ecCCCeEEEEEcC-CCCEEEEEECCEECCCC----------CCCCCeEEeCCCCcCCCEEEEEEecCCC-CeeEEEEEEE
Confidence 4689999999999 88999999999877653 1123344454445556999999975432 221211111
Q ss_pred -----------------------------------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc
Q psy15235 112 -----------------------------------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE 156 (323)
Q Consensus 112 -----------------------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~ 156 (323)
..+...+..+|++++|.|. +.| .+.+.|++++..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p---~p~i~W~k~~~~l~~~~- 156 (204)
T 1sy6_A 83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYP---GSEILWQHNDKNIGGDE- 156 (204)
T ss_dssp ------------------------------------CCCCEEEEETTEEEEECS--CCC---SSCEEEEETTEEESCCT-
T ss_pred eccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCC---CCceEEEECCEECCCcc-
Confidence 1111222338999999998 555 67899999998875410
Q ss_pred ccCcEEeceeEEEEeee-ecCCCeeEEEEEEcCCCC
Q psy15235 157 LSGRLTQSKDSITIRKT-TVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 157 ~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~ 191 (323)
...........|.|.++ +.+|+|.|+|.| .|..+
T Consensus 157 ~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A-~N~~g 191 (204)
T 1sy6_A 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYP-RGSKP 191 (204)
T ss_dssp TCTTEEEETTEEEETTCCHHHHCEEEEEEE-TTSCG
T ss_pred CCceEecCCCEEEEeeCCccccCEEEEEEe-ccCCC
Confidence 01122234678999999 999999999999 78754
No 256
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.78 E-value=1.2e-17 Score=133.13 Aligned_cols=175 Identities=17% Similarity=0.312 Sum_probs=112.0
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc----------cccccCcEE-----eceeEEEEeeeec
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE----------ATELSGRLT-----QSKDSITIRKTTV 175 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~----------~~~~~~~~~-----~~~~~l~i~~~~~ 175 (323)
.|....+.+|++++|.|.+.+.+ .+.+.|||. +..... ...+.+|+. .....|.|.+++.
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 7 WPATLVQPVGSPLSLECTVEGTS---NPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp ECSEEEEETTCCEEEEEEEESCS---SCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred CCceEEecCCCCEEEEEEecCCC---CceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 45566788999999999999877 789999992 211100 011233443 2356899999999
Q ss_pred CCCeeEEEEEEcCCCC----CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CCC-cEEEEE
Q psy15235 176 DDAGQYSCRLIDPKST----NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PPP-TVEWRI 241 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~ 241 (323)
+|+|.|.|.+ .+..+ .........|.|.. +|.+... ....+..|+.+.|.|.+.|. |++ .+.|++
T Consensus 84 ~D~G~Y~C~~-~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k 162 (245)
T 3nfj_J 84 SDSGFYLCAW-SVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWV 162 (245)
T ss_dssp GGCEEEEEEE-ECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhCEEEEEEE-eeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEE
Confidence 9999999999 56211 11122334566654 4444321 12224459999999999885 544 699999
Q ss_pred CCeeeeccCCeeee--ecC--CCCC--CcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 242 GNDTYFRSQGRIKL--SEH--PEKG--TANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 242 ~~~~~~~~~~~~~~--~~~--~~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
+|..+......... ... ..++ ...+.|.|.....+| .|.|+|.|.|....
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~ 219 (245)
T 3nfj_J 163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp TTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCC
Confidence 99887532111000 000 0111 123688999888888 66999999998754
No 257
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.78 E-value=9.1e-18 Score=128.38 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=110.4
Q ss_pred eEEecCCcEEEEEEeecCCCCCCc--eEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDY--QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT 194 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 194 (323)
..+..|++++|.|.+ +.+ .+ .|+|++.+..+. +.........|.|.+++.+|+|.|.|.+ .+.. ..
T Consensus 17 v~v~~G~sv~L~C~a-~~p---~P~~~i~W~~~~~~l~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a-~n~~--~~ 84 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACA---DRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVG-SCGG--RT 84 (210)
T ss_dssp EEEETTCCEEEEEEE-CCS---STTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCGGGCEEEEEEE-EETT--EE
T ss_pred eEEeCCCCEEEEEEC-CCC---CCCcceEEeecccccC-----cEEecCCccEEEECccCcccCceEEEEE-EeCC--Cc
Confidence 468899999999999 766 55 999998654331 1122245678999999999999999999 6652 34
Q ss_pred CceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecC-CC----CcEEEEECCeeeeccCC---eeeee--cC---CC
Q psy15235 195 PLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGS-PP----PTVEWRIGNDTYFRSQG---RIKLS--EH---PE 260 (323)
Q Consensus 195 ~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~----~~~~W~~~~~~~~~~~~---~~~~~--~~---~~ 260 (323)
....+.|+|..+|... +.+ .....|+.+ |.|.+.|. |. +++.|++|+..+..... ....+ .. ..
T Consensus 85 ~~~~~~ltV~~~P~~~~i~~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~ 162 (210)
T 1gsm_A 85 FQHTVQLLVYAFPNQLTVSP-AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 162 (210)
T ss_dssp EEEEEEEEEEBCCSEEEEES-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCC
T ss_pred eEEEEEEEEEecCCCcEEcc-ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcc
Confidence 5667888888888543 222 366678888 99999875 63 47999999999853211 11000 00 00
Q ss_pred -CCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 261 -KGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 261 -~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.....++|.+.....+|.+.|+|.|.+..
T Consensus 163 ~~~~vts~~~~~~~~~D~~~~~tC~a~~~L 192 (210)
T 1gsm_A 163 VLFRVTERWRLPPLGTPVPPALYCQATMRL 192 (210)
T ss_dssp CCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred eEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence 11234556666777777789999999987
No 258
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=144.35 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=123.0
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|.+...+....+.+|++++|.|.+.+. +.|++++..... .........|.|.+++.+|+|.|+|.+
T Consensus 4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~-------v~W~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~- 70 (292)
T 4dkd_C 4 IPVIEPSVPELVVKPGATVTLRCVGNGS-------VEWDGPPSPHWT-----LYSDGSSSILSTNNATFQNTGTYRCTE- 70 (292)
T ss_dssp CCEEESCCSSCEECTTCCEEEEEECSSC-------CCBCCCCCSSCE-----ECCBTTEEEEEESSCCGGGCSCEEECC-
T ss_pred CceecCCCCeEEEcCCCcEEEEEcCCCc-------eEEccCCCCceE-----EeccCceEEEEEcccccccCEEEEEEE-
Confidence 3555556666678899999999998662 789875532111 000134568999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecce--eeeeceeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235 187 DPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPEKG 262 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
.+..+ .....+.|.|..+|. ...+....+.+|+.+.|.|.+.+ |. +.+.|++++........++...
T Consensus 71 ~n~~~--~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~------ 141 (292)
T 4dkd_C 71 PGDPL--GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS------ 141 (292)
T ss_dssp CC------CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC------
T ss_pred ccCCC--CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc------
Confidence 66633 346777788877654 33455677889999999999987 44 7899999854433333444433
Q ss_pred CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
....|.|.++..+|+|.|+|.|.|..|. .....+.|.|..
T Consensus 142 -~~~~L~i~~~~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~ 181 (292)
T 4dkd_C 142 -PWHGFTIHRAKFIQSQDYQCSALMGGRK---VMSISIRLKVQK 181 (292)
T ss_dssp -SSSCCEETTCCGGGCSEEEEEECSTTSC---EECCCEEEEEEC
T ss_pred -CCceEEECCCCHHHCeEEEEEEEeCCCc---eeEEEEEEEEeC
Confidence 2455999999999999999999988754 233466777765
No 259
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.77 E-value=5.9e-18 Score=134.03 Aligned_cols=168 Identities=12% Similarity=0.170 Sum_probs=104.1
Q ss_pred cCCceEEE-eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeec
Q psy15235 20 SADGKITY-FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEA 87 (323)
Q Consensus 20 ~~~~~i~~-~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~ 87 (323)
.....+.. +..+.+.+|++++|.|.+. +.+.+.|+|++ ....... ......+......+...|.|.++
T Consensus 22 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 101 (237)
T 3sob_L 22 YADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL 101 (237)
T ss_dssp --CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred CccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence 33444544 6678899999999999954 46799999943 2211100 00011122224456778888887
Q ss_pred cc--CcceEEEeeccCCc---c--ceeeeeee-CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235 88 IL--ESGYVQSSLFIPRM---N--AITGNYDI-EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE 153 (323)
Q Consensus 88 ~~--~G~Y~C~~~~~~~~---~--~~~~~~~~-~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~ 153 (323)
+. +|.|+|.+.+..+. . .+.+.... .|.+.. ...|+.++|.|.+.+.+|. .+.|.|+++|..+..
T Consensus 102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~-~~~v~W~k~g~~~~~ 180 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSG 180 (237)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS-CCEEEEEETTEECCS
T ss_pred ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCC-ceEEEEEECCCCCCC
Confidence 64 99999999775532 1 12111111 233322 2247889999999885532 379999999988764
Q ss_pred cc--------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 154 AT--------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 154 ~~--------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.. ..++.+ .....|.|.....+|+|.|+|.| .|..
T Consensus 181 ~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~ 223 (237)
T 3sob_L 181 NSQESVTEQDSKDSTY-SLSSTLTLSKADYEKHKVYACEV-THQG 223 (237)
T ss_dssp SEEEEECCCCTTTCCE-EEEEEEEEEHHHHTTCCEEEEEE-ECTT
T ss_pred ceeecccccccCCCcE-EEEEEEEEcHHHccCCCcEEEEE-eeCC
Confidence 11 001111 22456888899899999999999 7763
No 260
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=133.13 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF 99 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~ 99 (323)
+.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+..... ..........|.|.+++ |+|.|+|.+.+
T Consensus 6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 2d3v_A 6 ATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ------NPLEPKNKARFSIPSMTEHHAGRYRCYYYS 79 (196)
T ss_dssp CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEE------CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CEEEeCCCCcccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccc------cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence 3444333357899999999999543 348999999987654200 00112334556666654 49999999987
Q ss_pred cCCcc----ceeee---------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---e
Q psy15235 100 IPRMN----AITGN---------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---Q 163 (323)
Q Consensus 100 ~~~~~----~~~~~---------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~ 163 (323)
..+.. .+... +...+ ...+.+|+.++|.|.+.+.+ +.+.|+|+|..+..... ..... .
T Consensus 80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p----~~~~W~k~g~~~~~~~~-~~~~~~~~~ 153 (196)
T 2d3v_A 80 PAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF----DRFILTEEGDHKLSWTL-DSQLTPSGQ 153 (196)
T ss_dssp TTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC----SEEEEEEC---CCEEEE-ECEECTTSC
T ss_pred CCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC----CEEEEEccCCccccccc-ccccccCCC
Confidence 54321 11111 11111 12467899999999998876 48999999987643000 00111 2
Q ss_pred ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 164 SKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 164 ~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
....|.|.+++.+|+|.|+|.+ .+.
T Consensus 154 ~~~~L~I~~v~~~D~G~Y~C~a-~n~ 178 (196)
T 2d3v_A 154 FQALFPVGPVTPSHRWMLRCYG-SRR 178 (196)
T ss_dssp EEEEEECCCCBTTBCEEEEEEE-EET
T ss_pred ceeEEEeeecCcccCeeEEEEE-Ecc
Confidence 3478999999999999999999 554
No 261
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.77 E-value=1.2e-17 Score=132.70 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=110.2
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--e------------eccccccccCcEE-----eceeEEEEeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--K------------SITEATELSGRLT-----QSKDSITIRKT 173 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~------------~~~~~~~~~~~~~-----~~~~~l~i~~~ 173 (323)
.|....+.+|++++|.|.+.+ + .+.+.|||.. . ... .....+|+. .....|.|.++
T Consensus 8 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 8 SPRHIIKEKGGRSVLTCIPIS-G---HSNVVWYQQTLGKELKFLIQHYEKVERD-KGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp ECSEEEEETTCCEEEEEECCT-T---CCEEEEEEECTTSCCEEEEEEETTEEEE-ECSCCTTEEEEECTTSCEEEEECSC
T ss_pred CcceeeecCCCcEEEEEEeCC-C---CceEEEEEECCCCCCEEEEEEcCCcccc-CcccCCeEEEEeCCCCEEEEEECcC
Confidence 455667889999999999876 4 5799999821 1 111 111224544 23568999999
Q ss_pred ecCCCeeEEEEEEcCCC-CCCCCceeeeeEEE------ecceeee--eceeEEeeCCeEEEEEEEec-CCCC-cEEEEEC
Q psy15235 174 TVDDAGQYSCRLIDPKS-TNTTPLAQADFDVI------MKPTAKL--VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIG 242 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~------~~p~~~~--~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~ 242 (323)
+.+|+|.|.|.+ .+.. ..........+.|. .+|.+.. +....+..|+.++|.|.+.| .|.+ .+.|+++
T Consensus 83 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 83 ELEDSAMYFCAS-SLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CGGGCEEEEEEE-ESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred ChhHCEEEEEEE-ccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999 5221 11122333456665 2344432 22223456899999999987 5666 7999999
Q ss_pred CeeeeccCCeee--eecCCCCCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 243 NDTYFRSQGRIK--LSEHPEKGTANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
|..+........ ...........+.|.|.....+| .|.|+|.|.|....
T Consensus 162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 988753211110 00000000123569999999999 67999999998754
No 262
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.77 E-value=9.3e-18 Score=135.52 Aligned_cols=172 Identities=17% Similarity=0.304 Sum_probs=109.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~ 176 (323)
.|....+.+|++++|.|.+.+.++. ..+.+.|+++. .... . ......|+. .....|.|.+++.+
T Consensus 21 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 100 (268)
T 1x9q_A 21 TPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE 100 (268)
T ss_dssp ECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence 4555567899999999999876520 03789999853 2111 0 001234554 23568999999999
Q ss_pred CCeeEEEEEEcCCCCCCCCceeeeeEEEecc------------------------eeeeeceeEEeeCCeEEEEEEEecC
Q psy15235 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP------------------------TAKLVETLTVIEGEKLRLECLVVGS 232 (323)
Q Consensus 177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p------------------------~~~~~~~~~~~~g~~~~l~C~~~g~ 232 (323)
|+|.|.|.+ .+.... .......|.|...+ .+..+....+.+|++++|.|.+.+.
T Consensus 101 DsG~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~ 178 (268)
T 1x9q_A 101 DLGVYFCSQ-STHVPW-TFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF 178 (268)
T ss_dssp GCEEEEEEE-CSSSSC-EECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred HCEEEEEEE-ecCCCc-eEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCc
Confidence 999999999 665321 11123345554321 1223445678899999999999887
Q ss_pred CC--CcEEEEECC--eeee------------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235 233 PP--PTVEWRIGN--DTYF------------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288 (323)
Q Consensus 233 p~--~~~~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 288 (323)
|+ +.+.|+++. ..+. ....++.+... .......|+|.+++.+|+|.|+|.|.|.
T Consensus 179 ~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 179 TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD--DSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEe--CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 64 789999852 2211 01233333310 0112468999999999999999999985
No 263
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.77 E-value=5.3e-18 Score=137.78 Aligned_cols=170 Identities=15% Similarity=0.220 Sum_probs=111.2
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~ 172 (323)
|....+.+|++++|.|.+.+.... ...+.|||.. ..... ......|+. .....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFS-SFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS 85 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCT-TSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred CCCEEECCCCcEEEEEEeeccCCC-CeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 555678899999999999874211 5789999732 11110 011223443 1235899999
Q ss_pred eecCCCeeEEEEEEcCCC-------CCCCCceeeeeEEEe---------------cceeeeeceeEEeeCCeEEEEEEEe
Q psy15235 173 TTVDDAGQYSCRLIDPKS-------TNTTPLAQADFDVIM---------------KPTAKLVETLTVIEGEKLRLECLVV 230 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~-------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~g~~~~l~C~~~ 230 (323)
++.+|+|.|.|.+ .+.. ..........|.|.. ++.+..++...+.+|++++|.|.+.
T Consensus 86 v~~~DsG~Y~C~~-~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~ 164 (280)
T 3fku_X 86 LRSEDTAVYYCAR-SPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGN 164 (280)
T ss_dssp CCSTTCEECCEEE-CSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECC
T ss_pred CChhhCEEEEEEE-ecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEec
Confidence 9999999999999 5540 111122344566655 4455544457789999999999998
Q ss_pred c-CC-CCcEEEEEC--Ceeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 231 G-SP-PPTVEWRIG--NDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 231 g-~p-~~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+ .+ .+.+.|++. +..+.. ...++.... ......|+|.+++.+|+|.|.|.+.|..
T Consensus 165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR----SGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 7 44 378999983 222110 112333321 0134679999999999999999999876
No 264
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.77 E-value=6.6e-18 Score=132.75 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=111.0
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE-e-----ceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT-Q-----SKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~-~-----~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.+.. .+.+.|||+. .... . ...+.+|+. . ....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeEecCCCCEEEEEEecCcccC-CceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 334568899999999999875421 3689999853 2111 0 011245655 1 256899999
Q ss_pred eecCCCeeEEEEEEcCCCCC----C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEE
Q psy15235 173 TTVDDAGQYSCRLIDPKSTN----T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEW 239 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~----~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W 239 (323)
++.+|+|.|.|.+ .+..+. . .......|.|.. +|.+.. .+...+..|+.++|.|.+.|. |.+ .+.|
T Consensus 86 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 164 (225)
T 1op3_H 86 MRVEDTAIYYCAR-KGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 164 (225)
T ss_dssp CCGGGCEEEEEEE-ECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEEC
T ss_pred CChhhCEEEEEEE-ecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEE
Confidence 9999999999999 665320 0 111234666664 344432 222235679999999999876 776 8999
Q ss_pred EECCeeeecc-CCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 240 RIGNDTYFRS-QGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
++++..+... ..... . .++ ....+.|.|.++..+| |.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~-~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 165 NSGALTSGVHTFPAVL-Q--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp CTTSCCTTCEECCCEE-C--TTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred ecCCCcCCeEecCcee-C--CCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 9988653110 01010 0 111 1134679999998888 9999999998743
No 265
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.77 E-value=2.4e-18 Score=134.30 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=104.3
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc------------cccccCcEE----eceeEEEEeeeec
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE------------ATELSGRLT----QSKDSITIRKTTV 175 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~------------~~~~~~~~~----~~~~~l~i~~~~~ 175 (323)
+....+.+|++++|.|.+.+.+.. ...+.|||.. ..... .....+|+. .....|.|.+++.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (215)
T 3nl4_H 6 SGGRLVTPGTPLTLACTVSGFSLN-TYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTT 84 (215)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTT-TCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCG
T ss_pred CCCEEEcCCCcEEEEEEecCcccC-CCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCc
Confidence 444567889999999999763211 5789999832 11110 012244554 3455799999999
Q ss_pred CCCeeEEEEEEcCCCCC--CCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCC--CcEEEEECCeee
Q psy15235 176 DDAGQYSCRLIDPKSTN--TTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTY 246 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~~--~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~ 246 (323)
+|+|.|.|.+ .+..+. ........+.|. .+|.+. .++...+.+|+.++|.|.+.+.++ ..+.|++++..+
T Consensus 85 ~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~ 163 (215)
T 3nl4_H 85 EDTATYFCVR-KYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTN 163 (215)
T ss_dssp GGCEEEEEEE-ECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred ccCEEEEEEE-ecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEEC
Confidence 9999999999 555221 012233456665 345554 333445667999999999987643 358899988644
Q ss_pred eccCCeeeeecCCCCCCcceeEEE---eecCcCCCeEEEEEEeecccCCCCCceeEEEEE
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQI---DEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i---~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~ 303 (323)
.......... ....+.+ ..+...| |.|+|.|.|..|. ......|.
T Consensus 164 ~~~~~~~~~~-------~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~----~~~~~~l~ 211 (215)
T 3nl4_H 164 GVRTFPSVRQ-------SSGLYSLSSVVSVTSSS-QPVTCNVAHPATN----TKVDKTVA 211 (215)
T ss_dssp TEEECCCEEC-------TTSCEEEEEEEEECC----CCEEEEEEGGGT----EEEEEECC
T ss_pred CeEecCceEC-------CCCCEEEEEEEEEeccC-CEEEEEEEeCCCC----cceEEecC
Confidence 2211111111 1122222 4456667 9999999999955 44444443
No 266
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.77 E-value=2.7e-17 Score=127.49 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=107.5
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceee-----cc----------CcceEEEeeeeCCeEEEEEeec--
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQS-----SV----------DSGFAATANLTEDNFKYSIHEA-- 87 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~-----~~----------~~~~~~~~~~~~~~~~l~i~~~-- 87 (323)
.+.+..+.+|++++|.|.. .+.+.+.|++++...... .. ..++.. .. .++ .|.|.++
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~-~~-~~~--~L~i~~v~~ 80 (208)
T 3r4d_A 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI-IY-SNG--SLLFQMITM 80 (208)
T ss_dssp EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEE-EC-TTS--CEEECSCCG
T ss_pred cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeE-Ee-cCC--eEEEccccc
Confidence 3456789999999999994 355799999975322111 00 011110 11 123 3555555
Q ss_pred ccCcceEEEeeccCC-ccceeeeeee--C---CceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc
Q psy15235 88 ILESGYVQSSLFIPR-MNAITGNYDI--E---PKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL 157 (323)
Q Consensus 88 ~~~G~Y~C~~~~~~~-~~~~~~~~~~--~---~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~ 157 (323)
.|+|.|+|.+.+... .......+.+ . +.... +..|+.+.|.|.+.+.+ +.+.|++++..+..
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~p----p~i~W~~~g~~l~~---- 152 (208)
T 3r4d_A 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG----ANIQWLFNSQSLQL---- 152 (208)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTT----CEEEEEETTEECCC----
T ss_pred cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCC----CceEEEECCEeCCC----
Confidence 459999999988742 2222222222 1 11111 66799999999998854 58999999998876
Q ss_pred cCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 158 SGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 158 ~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
..++. .....|.|.++..+|+|.|+|.+ .|..+. ..+..++|.|..+|
T Consensus 153 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~g~-~~s~~~~l~v~~~~ 202 (208)
T 3r4d_A 153 TERMTLSQNNSILRIDPIKREDAGEYQCEI-SNPVSV-RRSNSIKLDIIFDP 202 (208)
T ss_dssp CSSEEEETTTTEEEESSCCGGGCEEEEEEE-ECTTCC-EECCCEEECCC---
T ss_pred CCCeEEcCCCCEEEEeccCHHhCeEEEEEE-ecCCCc-ccCCceeeeEEeCC
Confidence 44544 34478999999999999999999 777544 34556666666554
No 267
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.77 E-value=6.8e-18 Score=141.38 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=113.0
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.++. .+.+.|+|+ +..+.. ......|+. .....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFT-DHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTT-SSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCeEEeCCCcEEEEEEcCCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 444568899999999999886311 578999996 332210 011245554 1346899999
Q ss_pred eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCee
Q psy15235 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDT 245 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~ 245 (323)
++.+|+|.|.|.+ .+.. ........|.|.. +|.+. .++...+.+|+.++|.|.+.|. |. +.+.|++++..
T Consensus 86 v~~~D~G~Y~C~~-~n~~--~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~ 162 (344)
T 1za6_B 86 LRSEDTAVYFCTR-SLNM--AYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT 162 (344)
T ss_dssp CCGGGCEEEEEEE-TTTT--CEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred CCcccCEEEEEEE-ecCc--ceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence 9999999999999 7642 1223345666662 34444 2333445789999999999886 65 69999999875
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.......... ........+.|+|.++..+| |.|+|.|.|..|.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~ 206 (344)
T 1za6_B 163 SGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 206 (344)
T ss_dssp TTEEECCCEEC-TTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred CceeECCCeEC-CCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 32110000000 00001124589999999888 9999999999864
No 268
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.76 E-value=3.3e-18 Score=143.47 Aligned_cols=169 Identities=9% Similarity=0.117 Sum_probs=114.4
Q ss_pred EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCc-ceEEEeecc
Q psy15235 26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LES-GYVQSSLFI 100 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G-~Y~C~~~~~ 100 (323)
..+....+.+|++++|.|.+ .+.+.+.|++++..+...... ........|.|.+++ |+| .|+|.+.+.
T Consensus 163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~ 235 (347)
T 2ifg_A 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAEND 235 (347)
T ss_dssp EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence 34566789999999999994 467899999988765543111 012334456666554 499 999999987
Q ss_pred CCccceeeeeee--CCc--eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-------eceeEEE
Q psy15235 101 PRMNAITGNYDI--EPK--YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-------QSKDSIT 169 (323)
Q Consensus 101 ~~~~~~~~~~~~--~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~~~l~ 169 (323)
.+.......+.+ .|. ......|+.++|.|.+.|.| .+.|.|+++|..+........++. .....|.
T Consensus 236 ~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 312 (347)
T 2ifg_A 236 VGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP---APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 312 (347)
T ss_dssp TEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEES---CCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEE
T ss_pred CCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecC---CCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEE
Confidence 766544333333 222 11245699999999999987 789999999998875111111110 1356799
Q ss_pred EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
|.+++.+|+|.|+|.| .|..+ .....+.+.|..+|
T Consensus 313 I~~v~~~d~G~Y~C~a-~N~~G--~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 313 LNQPTHVNNGNYTLLA-ANPFG--QASASIMAAFMDNP 347 (347)
T ss_dssp ESSCCGGGCEEEEEEE-EETTE--EEEEEEEECSCCCC
T ss_pred ECCCCcccCceEEEEE-ecCCC--ceeeEEEEEecCCC
Confidence 9999999999999999 77743 34555555554443
No 269
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.76 E-value=2.4e-18 Score=133.45 Aligned_cols=170 Identities=11% Similarity=0.179 Sum_probs=108.9
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceE-----EEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFA-----ATANLTEDNFKYSIHEA--ILESGYVQSSL 98 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~ 98 (323)
+..+.+.+|+++.|.|.+. +.+.+.|++++..+.......+.. .+..... ..|.|.++ .|+|.|+|.+.
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~ 88 (209)
T 1nbq_A 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYTCMVS 88 (209)
T ss_dssp CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEEEEEE
T ss_pred CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCcEEEEEEe
Confidence 4567799999999999943 568999999887643211000000 0011112 34555555 45999999998
Q ss_pred ccCCcc--ceeeeeee--------CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccccccc-----CcEE
Q psy15235 99 FIPRMN--AITGNYDI--------EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELS-----GRLT 162 (323)
Q Consensus 99 ~~~~~~--~~~~~~~~--------~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~-----~~~~ 162 (323)
+..+.. .....+.+ .+....+..|+.++|.|.+ .+.| .+.+.|++++..+....... .++.
T Consensus 89 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 165 (209)
T 1nbq_A 89 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165 (209)
T ss_dssp ETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCC
T ss_pred cCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCC---CceeEEEECCeeCCCccccceeeeccceE
Confidence 864421 11111111 1222347789999999997 6766 67999999998876521110 1121
Q ss_pred --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
.....|.|.++..+|+|.|+|.| .|..+....+..+.|.|
T Consensus 166 ~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 166 LNPTTGELVFDPLSASDTGEYSCEA-RNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCTTTCCEEESSCCGGGCCCEEEEE-ECSSSCCEECCCBCCEE
T ss_pred EcCCcceEEEEeccccCCeEEEEEE-eCCcCcccccccEEEEE
Confidence 35678999999999999999999 78865543455555554
No 270
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.76 E-value=8.9e-18 Score=130.81 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=101.8
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEEcC--cccee---------eccCcceEEEeeeeCCeEEEEEeeccc--Cc
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQ---------SSVDSGFAATANLTEDNFKYSIHEAIL--ES 91 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G 91 (323)
.+..+.+.+|++++|.|.+. +.+.+.|+|++ ..+.. .....+ +..........|.|.+++. +|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G 84 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSR--FSGSGSGTDFTLSINSVETEDFG 84 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEEEESSCCGGGCE
T ss_pred CCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEccccccccccc--EEEEcCCCEEEEEECCCChhhCE
Confidence 36778899999999999954 45789999854 22210 001112 2223345667788887754 99
Q ss_pred ceEEEeeccCCccce-eeeeee-----CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-cc--
Q psy15235 92 GYVQSSLFIPRMNAI-TGNYDI-----EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-TE-- 156 (323)
Q Consensus 92 ~Y~C~~~~~~~~~~~-~~~~~~-----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~-- 156 (323)
.|+|.+.+..+.... ...+.+ .|.... ...|+.++|.|.+.+.+|. ...+.|+++|..+... ..
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~ 163 (213)
T 3d9a_L 85 MYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSW 163 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEEEE
T ss_pred EEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCC-ceEEEEEcCCCcCcceeeecC
Confidence 999999876543210 011111 222222 2258899999999884431 2489999999987652 00
Q ss_pred -----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 157 -----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 157 -----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.+..+ .....|.|.++..+|+|.|+|.| .|..
T Consensus 164 ~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~ 200 (213)
T 3d9a_L 164 TDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKT 200 (213)
T ss_dssp CCCCTTTCCE-EEEEEEEEEHHHHHHCCEEEEEE-ECTT
T ss_pred CCccCCCCCE-EEEEEEEEeccccCCCCEEEEEE-EEcc
Confidence 00111 12458999999999999999999 7763
No 271
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.76 E-value=3.7e-18 Score=134.44 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=108.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCC--ceEEEEECC--eecc---c---------cccccCcEEe------ceeEEEEe
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDD--YQIVWYKGN--KSIT---E---------ATELSGRLTQ------SKDSITIR 171 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~--~~i~W~~~~--~~~~---~---------~~~~~~~~~~------~~~~l~i~ 171 (323)
|....+.+|++++|.|.+.+.+.. . +.+.|+|+. .... . ...+.+|+.. ....|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIR-TSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHH-HHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred CCceeecCCCeEEEEEEEeCcccC-CCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 344568899999999999886510 1 689999842 2211 0 0112455541 24789999
Q ss_pred eeecCCCeeEEEEEEcCCCCC-----C--CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cE
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTN-----T--TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TV 237 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~-----~--~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~ 237 (323)
+++.+|+|.|.|.+ .+..+. . .......|.|.. +|.+. .++...+.+|+.++|.|.+.|. |.+ .+
T Consensus 86 ~v~~~D~G~Y~C~~-~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v 164 (228)
T 3bae_H 86 SVDTADTATYYCAR-RGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL 164 (228)
T ss_dssp SCCGGGCEEEEEEE-EEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred CCCcccCEEEEEEE-ecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence 99999999999999 554210 0 111235666653 45444 2323446789999999999876 777 89
Q ss_pred EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.|++++..+.......... .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus 165 ~W~~~~~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~ 215 (228)
T 3bae_H 165 TWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS 215 (228)
T ss_dssp EEGGGTCCTTEEEEEEEEE--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred EEeeCCcccCceEcCceeC--CCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence 9999886531110000000 1011135679999988866 9999999999965
No 272
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.76 E-value=1.4e-18 Score=137.29 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=106.7
Q ss_pred cceEEEeeccCCc---c--ceeeeeee-CCceeE-EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc-----
Q psy15235 91 SGYVQSSLFIPRM---N--AITGNYDI-EPKYKV-FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE----- 156 (323)
Q Consensus 91 G~Y~C~~~~~~~~---~--~~~~~~~~-~~~~~~-~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~----- 156 (323)
|.|.|.+++..+. . ...|.+.+ .|.... +..|+.++|.|.+.+.. |. ...|+|+++|..+.....
T Consensus 1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~-~i~v~W~k~g~~l~~~~~~~~~~ 79 (240)
T 4acp_A 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP-EVKFNWYVDGVEVHNAKTKPREE 79 (240)
T ss_dssp ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--C-CCEEEEEETTEEECCCEECCCEE
T ss_pred CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCC-ccEEEEEECCcccCCceeccceE
Confidence 6788988875442 1 12233333 333332 44599999999999976 42 458999999988754110
Q ss_pred -ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEec-
Q psy15235 157 -LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVG- 231 (323)
Q Consensus 157 -~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g- 231 (323)
.++.+ .....|.|.....+|.|.|+|.+ .+..+.......+.+ .+..+|.+.+.. ......|+.+.|.|.+.|
T Consensus 80 ~~~g~~-~~~s~L~i~~~~~~d~~~YtC~v-~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf 157 (240)
T 4acp_A 80 QYNSTY-RVVSVLTVLHQDWLNGKEYKCKV-SNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF 157 (240)
T ss_dssp C---CE-EEEEEEECCHHHHHHTCCEEEEE-ECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred CCCCeE-EEEEEEEEechhccCCCEEEEEE-EcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence 01222 22346777777777899999999 676432222222221 233456555322 222234889999999988
Q ss_pred CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 232 SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 232 ~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+|.+ .+.|+++|..+.... ........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus 158 ~P~~i~v~W~k~g~~~~~~~-~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 158 YPSDIAVEWESNGQPENNYK-ATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp BSSCCEEEEEETTEECSSEE-ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred eCCCcEEEEEECCEECCCcC-ccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence 4654 799999998764211 11010001111 234678888777778999999999987
No 273
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.76 E-value=1.2e-16 Score=123.16 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=97.0
Q ss_pred CceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL 98 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~ 98 (323)
.+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+....... ..........|.|.+++ |+|.|+|.+.
T Consensus 8 ~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~----~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 8 KPSLLAHPGPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIG----EHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp CCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEEC----EEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCeEEEEcCCccCCCCcEEEEEeccCCCCEEEEEECCCcCCcceeee----ecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 4455544446789999999999954 557999999998765431000 00111123456666554 5999999997
Q ss_pred ccCC-------ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235 99 FIPR-------MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 99 ~~~~-------~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
+... +..+.. .+...+. ..+.+|+.++|.|.+.+ + .+.+.|+|+|..+..... .....
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~ 157 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-S---YDMYHLSREGEAHERRLP-AGPKV 157 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-C---CSEEEEEETTCSSCEEEE-CEEEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-C---CceEEEEECCcccCcccc-ccccc
Confidence 5321 111111 1222222 24678999999999886 3 468999999987654100 00111
Q ss_pred --eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 163 --QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 163 --~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.....|.|.+++ |+|.|+|.+.
T Consensus 158 ~~~~~~~L~i~~v~--d~G~Y~C~a~ 181 (201)
T 1nkr_A 158 NGTFQADFPLGPAT--HGGTYRCFGS 181 (201)
T ss_dssp TTEEEEEEEEEECC--SCEEEEEEEE
T ss_pred CCceEEEEEeCCcC--CCeeEEEEEE
Confidence 126789999998 9999999994
No 274
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.76 E-value=1.5e-17 Score=135.96 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=111.2
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~------~~~~~l~i~~ 172 (323)
|....+.+|++++|.|.+.+.+.. .+.+.|+|+. .... . .....+|+. .....|.|.+
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFT-SYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred CCcEEecCCCCEEEEEeccCCccc-ccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 345668899999999999875421 3689999953 2110 0 011234543 1246899999
Q ss_pred eecCCCeeEEEEEEcCCC-C--CCCCceeeeeEEEe----------------cceee-eeceeEEeeCCeEEEEEEEecC
Q psy15235 173 TTVDDAGQYSCRLIDPKS-T--NTTPLAQADFDVIM----------------KPTAK-LVETLTVIEGEKLRLECLVVGS 232 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~-~--~~~~~~~~~l~v~~----------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~ 232 (323)
++.+|+|.|.|.+ .+.. + .........|.|.. ++.+. .+....+.+|++++|.|.+.+.
T Consensus 108 v~~~DsG~Y~C~~-~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 186 (291)
T 2gki_A 108 LTSEDSAVYYCAR-GAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS 186 (291)
T ss_dssp CCGGGCEEEEEEE-ECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred CCHHHCEEEEEEE-eccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence 9999999999999 5542 1 00111233566655 22333 2445678999999999999888
Q ss_pred CCC------cEEEEECC--eee---ecc--------CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 233 PPP------TVEWRIGN--DTY---FRS--------QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 233 p~~------~~~W~~~~--~~~---~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
|.+ .+.|+++. ..+ ... ..++.... .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe----cCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 765 89999963 211 100 23333321 0124689999999999999999999954
No 275
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=1e-16 Score=127.78 Aligned_cols=164 Identities=15% Similarity=0.276 Sum_probs=106.5
Q ss_pred CceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--cccee--------------eccCcceEEEeeeeCCeEE
Q psy15235 22 DGKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQ--------------SSVDSGFAATANLTEDNFK 81 (323)
Q Consensus 22 ~~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~--------------~~~~~~~~~~~~~~~~~~~ 81 (323)
+..+..+.++.+.+|++|+|.|.+. + .+.+.|+|+. ..+.. .....+..+..+...+...
T Consensus 3 ~~~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 82 (247)
T 2ghw_B 3 EVQLVQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY 82 (247)
T ss_dssp CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE
T ss_pred eeEEEecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE
Confidence 4567778888999999999999954 3 4679999943 22110 0011222222222355677
Q ss_pred EEEeeccc--CcceEEEeeccCCcc------ceeee-------------------eeeCCceeEEecCCcEEEEEEeecC
Q psy15235 82 YSIHEAIL--ESGYVQSSLFIPRMN------AITGN-------------------YDIEPKYKVFEYRVPFTLKCNVTSP 134 (323)
Q Consensus 82 l~i~~~~~--~G~Y~C~~~~~~~~~------~~~~~-------------------~~~~~~~~~~~~g~~v~l~C~~~~~ 134 (323)
|.|.+++. +|.|+|.+.+..... .+.+. +...+....+.+|++++|.|.+.+.
T Consensus 83 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~ 162 (247)
T 2ghw_B 83 LQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQS 162 (247)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred EEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCC
Confidence 88887764 999999998762110 11111 1112333447789999999999998
Q ss_pred CCCCCceEEEEE--CCeeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 135 PPGDDYQIVWYK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 135 ~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+ .+.+.|+| ++..+.. ......++. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 163 ~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~~ 227 (247)
T 2ghw_B 163 V---RSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQ-RSN 227 (247)
T ss_dssp C---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEE-CSS
T ss_pred c---cceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEE-ccC
Confidence 8 57999999 5543311 001133443 34567999999999999999999 654
No 276
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.76 E-value=7.7e-17 Score=125.22 Aligned_cols=162 Identities=12% Similarity=0.215 Sum_probs=102.9
Q ss_pred eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235 24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL- 89 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~- 89 (323)
.+..+.++.+.+|++|+|.|.+. +.+.+.|+|++ ..+... ....+ +......+...|.|.+++.
T Consensus 3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 3 VLTQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPAR--FSGSGSGTDFTLTIDPVEAD 80 (210)
T ss_dssp CEECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCCGG
T ss_pred cEECCCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCcccc--EEEEecCCEEEEEECCCCHH
Confidence 34457778899999999999954 45789999953 332110 01111 2222345667788887754
Q ss_pred -CcceEEEeeccCCccce-eeeeee-----CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-c
Q psy15235 90 -ESGYVQSSLFIPRMNAI-TGNYDI-----EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-T 155 (323)
Q Consensus 90 -~G~Y~C~~~~~~~~~~~-~~~~~~-----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~ 155 (323)
+|.|+|.+.+..+.... ...+.+ .|.+.+ ...|+.++|.|.+.+.+|. ...|.|+++|..+... .
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~ 159 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPR-DISVKWKIDGTERRDGVL 159 (210)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEECCTTEE
T ss_pred HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCC-ceEEEEEeCCccCCCCce
Confidence 99999999876543210 011111 222222 1258999999999875431 2489999999987652 0
Q ss_pred cc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 156 EL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 156 ~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.. ++.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus 160 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~ 199 (210)
T 1lk3_L 160 DSVTDQDSKDSTY-SMSSTLSLTKADYESHNLYTCEV-VHKT 199 (210)
T ss_dssp EEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-ECTT
T ss_pred EccCCccCCCCCE-EEEEEEEEChHHhccCCcEEEEE-EecC
Confidence 00 0111 22347999999999999999999 6763
No 277
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.76 E-value=1.8e-17 Score=132.56 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=112.8
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee--cc-----------ccccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS--IT-----------EATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~--~~-----------~~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.... ...+.|||.. .. .. ....+.+|+. .....|+|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFS-SFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred CCCEEECCCCcEEEEEEeeCcccc-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 344567889999999999763211 4689999842 11 10 0012234554 2345699999
Q ss_pred eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECC
Q psy15235 173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGN 243 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~ 243 (323)
++.+|+|.|.|.+ .+... .........|.|. .+|.+. ......+..|+.+.|.|.+.| .|.+ .+.|++++
T Consensus 86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~ 164 (253)
T 3liz_H 86 LKSEDTAMYYCTR-DPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (253)
T ss_dssp CCGGGCEEEEEEE-CCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CChhhCEEEEEEE-ecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCC
Confidence 9999999999999 55410 1111223456665 355554 333445667999999999987 6766 89999988
Q ss_pred eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
..+.......... .......+.|+|.....+| |.|+|.|.|..+. ....+.|.+.
T Consensus 165 ~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~----~~~~~~~~~~ 219 (253)
T 3liz_H 165 LSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS----TKVDKKIVPR 219 (253)
T ss_dssp BCTTEEECCCEEE--TTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT----EEEEEECCCC
T ss_pred eecceEeCCcccc--CCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC----cceEEEecCc
Confidence 6321100000000 0001124789999999999 9999999999955 5556665554
No 278
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.76 E-value=9.9e-18 Score=150.29 Aligned_cols=169 Identities=16% Similarity=0.245 Sum_probs=114.8
Q ss_pred eEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccc--------ccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 117 KVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEA--------TELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
..+..|++++|.|.+ .+.+ .+.|.|++++..+... ..+..+.. ..+.+|.|.+++.+|+|.|+|.+
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~- 451 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKP---PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA- 451 (581)
T ss_dssp EEEETTSCEEECCTTCCSSS---SCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEE-
T ss_pred cceecCCcEEEeeeecCCCC---CceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEE-
Confidence 446789999999998 6655 6899999987633110 01122333 44458999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCe-EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeec----
Q psy15235 187 DPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEK-LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSE---- 257 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~-~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~---- 257 (323)
.+..+. .....+.|.|..+ |.+..... .+..+.. +.|.|.+.+ +|.|.+.|++|+..+.....++.+..
T Consensus 452 ~n~~~~-~~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~ 529 (581)
T 3o3u_N 452 MNRNGK-ETKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR 529 (581)
T ss_dssp ECTTSC-EEEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEE
T ss_pred EcCCCc-eeEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEE
Confidence 666322 1245677777663 34433322 3445544 567999987 69999999999998875444433211
Q ss_pred --CCCCCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 258 --HPEKGTANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 258 --~~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
........++|+|.+++.+| .|.|+|.|.|..+.
T Consensus 530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 530 HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp CTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred cCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 11112345789999998554 78999999999744
No 279
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.75 E-value=6.7e-18 Score=133.50 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=102.2
Q ss_pred CcchhHHHHHHHHHHhhhccCCceEEEeeceEEecCCcEEEEEEecc---Cc-eEEEEEcC--ccceee---------cc
Q psy15235 1 MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTI---FE-QVKWQLNG--RNINQS---------SV 65 (323)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~---~~-~v~W~~~g--~~~~~~---------~~ 65 (323)
|.++.+++.++++. . .......+..+..+.+.+|++|+|.|.+.+ .+ .+.|+|++ ..+... ..
T Consensus 1 M~~~~~ll~ll~~~-~-~~~~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2j6e_L 1 MAGFPLLLTLLTHC-A-GSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGV 78 (234)
T ss_dssp ---------------------CCCCBCCSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSS
T ss_pred CchhHHHHHHHHhh-c-ccccccEEeCCCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCc
Confidence 54454444443332 2 223334444477788999999999999542 23 69999963 322110 01
Q ss_pred CcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCc-------cceeeeee--eCCceeE------EecCCcEEEE
Q psy15235 66 DSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRM-------NAITGNYD--IEPKYKV------FEYRVPFTLK 128 (323)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~-------~~~~~~~~--~~~~~~~------~~~g~~v~l~ 128 (323)
..+ +......+...|.|.+++ |+|.|+|.+.+..+. ..+.+... ..|.+.. ...|+.++|.
T Consensus 79 ~~r--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~ 156 (234)
T 2j6e_L 79 PDR--FSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLV 156 (234)
T ss_dssp CTT--EEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEE
T ss_pred ccc--EEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEE
Confidence 111 222234566677777765 499999999876651 11111000 1222222 1248899999
Q ss_pred EEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 129 CNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 129 C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.+.+.+|. .+.|.|+++|..+........... .....|.|.++..+|+|.|+|.| .|.
T Consensus 157 C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a-~n~ 221 (234)
T 2j6e_L 157 CLISDFFPG-AVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV-THE 221 (234)
T ss_dssp ECCCBCSSC-CCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEE-EBT
T ss_pred EEEEEEcCC-ceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEE-EeC
Confidence 999986542 259999999998754211000000 23356889999999999999999 666
No 280
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.75 E-value=2.1e-18 Score=133.80 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=97.9
Q ss_pred ecCCcEEEEEEeecCCCC-CCceEEEEECCeeccccccccCcEEeceeE------EEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 120 EYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSITEATELSGRLTQSKDS------ITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
..|++++|.|.+.+.+|. ....|.|+|++..+..... .......... |.|.....+|+|.|+|.+ .+..+.
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~-~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a-~n~~~~ 93 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT-KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV-SNKALP 93 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE-CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEE-ECTTSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc-CCceeccCCcEEEEEEEEEEHHHccCCceEEEEE-EcCcCC
Confidence 689999999999886531 0359999999987654110 0011111122 233333344599999999 666432
Q ss_pred CCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-Ccce
Q psy15235 193 TTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANS 266 (323)
Q Consensus 193 ~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 266 (323)
......+.+ .+..+|.+.+.. ......|..+.|.|.+.|. |+ +.+.|+++|..+.... ........++. ...+
T Consensus 94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~gt~~~~s 172 (207)
T 1l6x_A 94 APIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYS 172 (207)
T ss_dssp SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE-ECCCEECTTSCEEEEE
T ss_pred cceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCcc-ccCceECCCCCEEEEE
Confidence 211222221 233456554221 1112246679999999885 54 3899999998775321 11111001111 1234
Q ss_pred eEEEeecCcCCCeEEEEEEeeccc
Q psy15235 267 VLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 267 ~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.|.|.....+|.|.|+|.|.|...
T Consensus 173 ~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 173 KLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEECHHHcCCCCEEEEEEEcCCc
Confidence 566777767789999999999873
No 281
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.75 E-value=2.2e-17 Score=134.09 Aligned_cols=176 Identities=13% Similarity=0.269 Sum_probs=111.9
Q ss_pred eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc-------------ccccccCcEE-----eceeEEEE
Q psy15235 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT-------------EATELSGRLT-----QSKDSITI 170 (323)
Q Consensus 111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~-----~~~~~l~i 170 (323)
...|....+.+|++++|.|.+.+.+ .+.+.|+|++ .... ......+|+. .....|.|
T Consensus 28 ~~~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 28 SQHPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp EEECSEEEEETTSCEEEEEEESSSC---EEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred EeCCCeEEecCCCeEEEEEEeCCCC---CCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 3356667788999999999998766 7899999853 1110 0011234554 13458999
Q ss_pred eeeecCCCeeEEEEEEcCCCC----CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CC-Cc
Q psy15235 171 RKTTVDDAGQYSCRLIDPKST----NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PP-PT 236 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~-~~ 236 (323)
.+++.+|+|.|.|.+ .+..+ .........|.|.. +|.+.+. ....+.+|+.++|.|.+.|. |+ +.
T Consensus 105 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 183 (279)
T 2wbj_D 105 TSAHPEDSSFYICSA-RDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE 183 (279)
T ss_dssp SSCCGGGCEEEEEEE-EETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred ccCCccCCEEEEEEE-cccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence 999999999999999 55211 00112234566654 4444422 11223468999999999886 54 58
Q ss_pred EEEEECCeeeeccCCeee------eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235 237 VEWRIGNDTYFRSQGRIK------LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVATR 291 (323)
Q Consensus 237 ~~W~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~ 291 (323)
+.|++|+..+.... ... +....++ ....+.|.|.....+| .|.|+|.|.|....
T Consensus 184 v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 184 LSWWVNGKEVHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEETTEECCTTE-EECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred EEEEECCEECCCCc-ccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 99999998875321 110 0000111 1124568888887765 67899999998754
No 282
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.75 E-value=1.8e-17 Score=129.09 Aligned_cols=169 Identities=15% Similarity=0.258 Sum_probs=104.9
Q ss_pred eEEEeeceEEecCCcEEEEEEec---------cCceEEEEEcCcc------ceee--------ccCcceEEEeeeeCCeE
Q psy15235 24 KITYFGDTEIMEGAPINISCILT---------IFEQVKWQLNGRN------INQS--------SVDSGFAATANLTEDNF 80 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~---------~~~~v~W~~~g~~------~~~~--------~~~~~~~~~~~~~~~~~ 80 (323)
.+..+..+.+.+|++|+|.|.+. +.+.+.|+|++.. +... ....+..+..+...++.
T Consensus 3 ~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 82 (214)
T 2zg1_A 3 ELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNC 82 (214)
T ss_dssp EEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBC
T ss_pred eeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeE
Confidence 45567778999999999999954 3568999997652 1110 01122222222223455
Q ss_pred EEEEeecc--cCcceEEEeeccCCc------cceeeeeee---CCcee---EEecCCcEEEEEEeecC----CCCCCceE
Q psy15235 81 KYSIHEAI--LESGYVQSSLFIPRM------NAITGNYDI---EPKYK---VFEYRVPFTLKCNVTSP----PPGDDYQI 142 (323)
Q Consensus 81 ~l~i~~~~--~~G~Y~C~~~~~~~~------~~~~~~~~~---~~~~~---~~~~g~~v~l~C~~~~~----~~~~~~~i 142 (323)
.|.|.+++ |+|.|+|.+.+..+. ..+...+.. .|.+. .+.+|+.++|.|.+.+. | .+.+
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p---~p~v 159 (214)
T 2zg1_A 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGP---PLTF 159 (214)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSS---CCEE
T ss_pred EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCC---CceE
Confidence 67776665 499999999876421 111111111 12111 14579999999999874 4 6899
Q ss_pred EEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235 143 VWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD 202 (323)
Q Consensus 143 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 202 (323)
.|++++..... .+. .....|.|..+..+|+|.|+|.| .|..+....+..+.|.
T Consensus 160 ~W~~~~~~~~~-----~~~-~~~~~L~i~~~~~~~~g~Y~C~a-~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 160 SWTGNALSPLD-----PET-TRSSELTLTPRPEDHGTNLTCQM-KRQGAQVTTERTVQLN 212 (214)
T ss_dssp EEESSTTSSSC-----SSC-CCSSEEEECCCTTCCSCEEEEEE-ECC----CCEEEEECC
T ss_pred EEeCCCCccCC-----CCc-eeEEEEEEecccHHcCcEEEEEE-EeCCCCcceEEEEEEE
Confidence 99999865432 111 34568999999999999999999 7764343444444443
No 283
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.75 E-value=3.8e-18 Score=135.08 Aligned_cols=167 Identities=12% Similarity=0.227 Sum_probs=105.0
Q ss_pred EecCCcEEEEEEeecCC--CCCCc-eEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 119 FEYRVPFTLKCNVTSPP--PGDDY-QIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~--~~~~~-~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+..|++++|.|.+.+.. | .+ .|.|++++..+..... ..+++ .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 29 v~~G~~v~L~C~~~g~~~~P--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~s~L~I~~~~~~D~g~Y~C~~-~~~ 104 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQND--PEVRFSWFIDDVEVHTAQTHAPEKQSNSTL-RSVSELPIVERDWLNGKTFKCKV-NSG 104 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTC--CCCEEEEEESSCEECCCEECCCEECTTSCE-EEEEEEECCHHHHHTTCCEEEEE-ECS
T ss_pred cccCCcEEEEEEEecCccCC--CCCEEEEEECCccccCcccccceEcCCCcE-EEEEEEEEEhhHccCCCeEEEEE-ecc
Confidence 56899999999998762 3 44 8999998866543110 01222 23457999999999999999999 666
Q ss_pred CCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-C
Q psy15235 190 STNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-T 263 (323)
Q Consensus 190 ~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (323)
.+.......+.+ .+..+|.+.+.. ......|+.+.|.|.+.|. |+ ..+.|++||..+.... ........++. .
T Consensus 105 ~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~dgt~~ 183 (239)
T 1i1c_A 105 AFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYK-NTPPTMDTDGSYF 183 (239)
T ss_dssp SSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE-ECCCEECTTSCEE
T ss_pred cCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCce-ecCceECCCCCEE
Confidence 433212222222 334456555322 1112347899999999884 54 3799999998774321 11111001111 1
Q ss_pred cceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
..+.|.|.....+|.|.|+|.|.|...
T Consensus 184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 184 LYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp EEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 234566666666789999999999873
No 284
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.75 E-value=9.6e-17 Score=124.91 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=102.3
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEc--Cccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--CcceE
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--ESGYV 94 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~ 94 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+|. +........ .....+..........|.|.+++. +|.|+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (213)
T 3mj8_L 7 PPLVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYY 86 (213)
T ss_dssp CSEEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEE
Confidence 3367899999999999954 5689999993 332221100 001112222356677888888764 99999
Q ss_pred EEeeccCCc-----cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--
Q psy15235 95 QSSLFIPRM-----NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-- 157 (323)
Q Consensus 95 C~~~~~~~~-----~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-- 157 (323)
|.+.+..+. ......+. ..|.+.. +..|+.++|.|.+.+.+|. .+.|.|+++|..+......
T Consensus 87 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~ 165 (213)
T 3mj8_L 87 CQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPA-DVAVTWEADGTPITQGVKTTQ 165 (213)
T ss_dssp EEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECC
T ss_pred EEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCC-CeEEEEEcCCcccCCCcccCC
Confidence 999887651 11111222 1233322 2269999999999986431 3599999999988641111
Q ss_pred ----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 158 ----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 158 ----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
...+ .....|.|.++..+|+|.|+|.| .|.
T Consensus 166 ~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~ 199 (213)
T 3mj8_L 166 PSKSDSKY-MATSYLTMTADAWKSRNTFICKV-THG 199 (213)
T ss_dssp CEEETTEE-EEEEEEEEESHHHHSCSCEEEEE-EET
T ss_pred cCccCCcE-EEEEEEEEeHHHcCCCCEEEEEE-EEC
Confidence 1111 23456899999999999999999 666
No 285
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.74 E-value=1.3e-17 Score=130.58 Aligned_cols=179 Identities=15% Similarity=0.171 Sum_probs=108.8
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc--Cc---eEEEEEcCccceeeccC------------cce-EE-----EeeeeCCe
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI--FE---QVKWQLNGRNINQSSVD------------SGF-AA-----TANLTEDN 79 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~~---~v~W~~~g~~~~~~~~~------------~~~-~~-----~~~~~~~~ 79 (323)
..+..+.++.+.+|++|+|.|.+.+ .+ .++|+|++..+...... ... .. .......+
T Consensus 3 v~V~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
T 4fmk_A 3 VRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRD 82 (225)
T ss_dssp CSEECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCB
T ss_pred EEEEeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCc
Confidence 4566677788999999999999643 22 48999987654332100 000 00 01111334
Q ss_pred EEEEEeecc--cCcceEEEeeccCCccceee-eeee--CC------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235 80 FKYSIHEAI--LESGYVQSSLFIPRMNAITG-NYDI--EP------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148 (323)
Q Consensus 80 ~~l~i~~~~--~~G~Y~C~~~~~~~~~~~~~-~~~~--~~------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~ 148 (323)
..|.|.+++ |+|.|+|.+.+..+...... ...+ .+ .......++.+.+.|.+.+.+| .+.+.|++++
T Consensus 83 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P--~~~~~w~~~~ 160 (225)
T 4fmk_A 83 ATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRP--PARITWISSL 160 (225)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBS--CCEEEEECSS
T ss_pred EEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCC--CCEEEEEECC
Confidence 456666655 49999999987655432111 1111 11 1122445677788887665444 6899999987
Q ss_pred eecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235 149 KSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 149 ~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
..+..... ..+.+ .....|.|.++..+|+|.|+|.| .|..+......+++|.|++
T Consensus 161 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~YtC~a-~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 161 GGEAKDTQEPGIQAGTV-TIISRYSLVPVGRADGVKVTCRV-EHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp CCEEEEEEEECSSTTCE-EEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCBTT
T ss_pred ccccCCcceEEecCCCE-EEEEEEEEeeCCHHHCCEEEEEE-EcCCCCeEEEEEEEEEEEE
Confidence 65543100 01111 22457999999999999999999 7876665556666666654
No 286
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.74 E-value=2.9e-17 Score=131.08 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=101.3
Q ss_pred eceEEecCCcEEEEEEe-----ccCceEEEEEcCccceeec--------------------------cCcceEEEeeeeC
Q psy15235 29 GDTEIMEGAPINISCIL-----TIFEQVKWQLNGRNINQSS--------------------------VDSGFAATANLTE 77 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~-----~~~~~v~W~~~g~~~~~~~--------------------------~~~~~~~~~~~~~ 77 (323)
.++.+.+|++++|.|.+ .+.+.+.|++++....... ...++. .+.. .
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~-~ 87 (250)
T 2fbo_J 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRA-SVAN-L 87 (250)
T ss_dssp SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTE-ECSC-T
T ss_pred CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceE-Eecc-C
Confidence 46789999999999994 4567899999875431100 000111 0110 1
Q ss_pred CeEEEEEeecc--cCcceEEEeeccCCccc-----eeeeeee------------CCceeEEecCCcEEEEEEeecCCCCC
Q psy15235 78 DNFKYSIHEAI--LESGYVQSSLFIPRMNA-----ITGNYDI------------EPKYKVFEYRVPFTLKCNVTSPPPGD 138 (323)
Q Consensus 78 ~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~-----~~~~~~~------------~~~~~~~~~g~~v~l~C~~~~~~~~~ 138 (323)
+...|.|.+++ |+|.|+|.+.+..+... ....+.+ .+....+.+|+.++|.|.+.+.+
T Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p--- 164 (250)
T 2fbo_J 88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA--- 164 (250)
T ss_dssp TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCT---
T ss_pred CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCC---
Confidence 23456666655 59999999998665321 1222222 11223355699999999999988
Q ss_pred CceEEEEECCeecccccc--------------------ccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 139 DYQIVWYKGNKSITEATE--------------------LSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 139 ~~~i~W~~~~~~~~~~~~--------------------~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.+.|.|++++..+..... +..+.. .....|.|.+++.+|+|.|+|.| .|..
T Consensus 165 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~ 236 (250)
T 2fbo_J 165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCEL-ATGQ 236 (250)
T ss_dssp TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEE-ESSS
T ss_pred CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEe-cCCc
Confidence 679999999887643110 011221 24478999999999999999999 7754
No 287
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.74 E-value=1e-17 Score=135.26 Aligned_cols=173 Identities=12% Similarity=0.203 Sum_probs=108.0
Q ss_pred EeeceEEecCCcEEEEEEec-----cCceEEEEEcCccceee---------------ccCcceEEEeeeeCCeEEEEEee
Q psy15235 27 YFGDTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS---------------SVDSGFAATANLTEDNFKYSIHE 86 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~ 86 (323)
.+..+.+.+|++++|.|.+. +.+.+.|++++...... ....+..+..+...++..|.|.+
T Consensus 11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 90 (268)
T 3mj6_A 11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD 90 (268)
T ss_dssp -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence 34567899999999999954 34679999966433111 00111111111123335566666
Q ss_pred cc--cCcceEEEeeccCCcc--ceeeeeee---CCceeEEecCCcEEEEEEe---ecCCCCCCceEEEEEC-Ceeccc--
Q psy15235 87 AI--LESGYVQSSLFIPRMN--AITGNYDI---EPKYKVFEYRVPFTLKCNV---TSPPPGDDYQIVWYKG-NKSITE-- 153 (323)
Q Consensus 87 ~~--~~G~Y~C~~~~~~~~~--~~~~~~~~---~~~~~~~~~g~~v~l~C~~---~~~~~~~~~~i~W~~~-~~~~~~-- 153 (323)
++ |+|.|+|.+.+..... .....+.+ .|....+..|+.++|.|.+ .+.+ .+.+.|+++ +.....
T Consensus 91 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p---~~~v~W~~~~~~~~~~~~ 167 (268)
T 3mj6_A 91 VQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKR---VTKVNWMFSSGSHTEEET 167 (268)
T ss_dssp CCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSC---CCEEEEEEECTTCSSCEE
T ss_pred CCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCC---ccceEEEecCCCCCccee
Confidence 65 4999999998765443 22222322 4556678899999999999 4445 789999994 321110
Q ss_pred ---------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235 154 ---------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 154 ---------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
...+..++. .....|.|.++..+|+|.|+|.| .|. .......+.|.|..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~--~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 168 VLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSI-YVG--KLESRKTIVLHVVQ 237 (268)
T ss_dssp EEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEE-EET--TEEEEEEEEEEEEC
T ss_pred EEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEE-EcC--CceEEEEEEEEEEc
Confidence 001111221 24678999999999999999999 665 33455666677643
No 288
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.74 E-value=5.4e-17 Score=129.89 Aligned_cols=172 Identities=14% Similarity=0.328 Sum_probs=106.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cc--------cccccC-cEE----eceeEEEEeeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TE--------ATELSG-RLT----QSKDSITIRKTT 174 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~--------~~~~~~-~~~----~~~~~l~i~~~~ 174 (323)
.|....+.+|++++|.|.+.+.+ ...+.|||. +... .. .....+ |+. .... |.|.+++
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~ 82 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQ---YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN 82 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTT---CCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred CCCeEEEeCCCcEEEEEEeCCCC---cceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence 45566788999999999987766 679999982 2111 00 001112 544 1112 9999999
Q ss_pred cCCCeeEEEEEEcCCCC----CCCCceeeeeEEE------ecceeeee--ceeEEeeCCeEEEEEEEec-CCCC-cEEEE
Q psy15235 175 VDDAGQYSCRLIDPKST----NTTPLAQADFDVI------MKPTAKLV--ETLTVIEGEKLRLECLVVG-SPPP-TVEWR 240 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~------~~p~~~~~--~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~ 240 (323)
.+|+|.|.|.+ .+..+ .........+.|. .+|.+.+. ....+..|+.++|.|.+.| .|++ .+.|+
T Consensus 83 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~ 161 (253)
T 3to4_D 83 MSQGRTLYCTS-SADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (253)
T ss_dssp CSSCEEEEEEE-ECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred hhhCeEEEEEE-ecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence 99999999999 54421 1111223355554 23444321 1112234689999999988 5766 89999
Q ss_pred ECCeeeeccCCeee--eecC-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235 241 IGNDTYFRSQGRIK--LSEH-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVA 289 (323)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~ 289 (323)
++|..+........ .... + .++ ...+.|.|.....+| .|.|+|.|.|..
T Consensus 162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 162 VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp ETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred ECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 99988753211100 0000 0 111 123678899888888 679999999986
No 289
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.74 E-value=8.2e-17 Score=127.92 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=113.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eec---cc-c--------cc-ccCcEEe------ceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSI---TE-A--------TE-LSGRLTQ------SKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~---~~-~--------~~-~~~~~~~------~~~~l~i~ 171 (323)
.|....+.+|++++|.|.+.+.... ...+.|||.. ... .. . .. ..+|+.. ....|.|.
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH 85 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred CCceEEecCCCcEEEEEEeCCcccc-CceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEEC
Confidence 4666778899999999999875211 5799999843 211 10 0 01 3456651 35789999
Q ss_pred eeecCCCeeEEEEEEcCCCC-C----CCCceeeeeEEEec-------ceee--eeceeEEeeCCeEEEEEEEecC-CC-C
Q psy15235 172 KTTVDDAGQYSCRLIDPKST-N----TTPLAQADFDVIMK-------PTAK--LVETLTVIEGEKLRLECLVVGS-PP-P 235 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~-~----~~~~~~~~l~v~~~-------p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~-~ 235 (323)
+++.+|+|.|.|.+ .+... . ........|.|... |.+. .+....+.+|+.++|.|.+.|. |. +
T Consensus 86 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~ 164 (242)
T 1hxm_B 86 NVEKQDIATYYCAL-WEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVI 164 (242)
T ss_dssp SCCGGGCEEEEEEE-EEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCE
T ss_pred CCCcccCEEEEEee-ecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCe
Confidence 99999999999999 44310 0 01122346677642 3222 2222334569999999999876 64 6
Q ss_pred cEEEEECCe-eeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 236 TVEWRIGND-TYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 236 ~~~W~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.+.|++++. .+.... ...... .......+.|+|..+.. | |.|+|.|.|..+. ......+.+
T Consensus 165 ~v~W~~~~~~~l~~~~~~~~~~~--~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~----~~~~~~~~~ 227 (242)
T 1hxm_B 165 KIHWEEKKSNTILGSQEGNTMKT--NDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNK----NGVDQEIIF 227 (242)
T ss_dssp EEEEEESSSCCCCCCEECCCEEC--SSSEEEEEEEEECTGGG-G-SCEEEEEEETTSG----GGSCEEEEE
T ss_pred EEEEEcCCCEeecCccccceecC--CCcEEEEEEEEEccccC-C-CEEEEEEEeCCCC----CCceeEeec
Confidence 899999987 453211 111100 00111246789987775 4 9999999999865 334445555
No 290
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.73 E-value=6.9e-18 Score=133.09 Aligned_cols=173 Identities=12% Similarity=0.217 Sum_probs=109.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec-cccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.|....+..|+.++|.|.+.+..|.+...|.|+++|..+ .... ..++.+ .....|.|.++..+|+|.|+|.+
T Consensus 19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~-~~~s~L~I~~~~~~D~g~Y~C~~- 96 (231)
T 2w59_A 19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTY-SASSAVPVSTQDWLSGERFTCTV- 96 (231)
T ss_dssp CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCE-EEEEEEECCHHHHHTTCCEEEEE-
T ss_pred CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcE-EEEEEEEecchhccCCCEEEEEE-
Confidence 344334568999999999988643101499999998876 3210 011222 23457999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEE------ecceeeee-ceeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeee-ee
Q psy15235 187 DPKSTNTTPLAQADFDVI------MKPTAKLV-ETLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIK-LS 256 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~-~~ 256 (323)
.+.... ....+.|. .+|.+.+. +......+..+.|.|.+.|. | .+.+.|++||..+........ ..
T Consensus 97 ~~~~~~----~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~ 172 (231)
T 2w59_A 97 QHEELP----LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVL 172 (231)
T ss_dssp ECTTCS----SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCE
T ss_pred EcCCCC----CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccc
Confidence 666322 23333332 34544422 11111235679999999885 4 368999999998754321110 01
Q ss_pred cC--------CC-C-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 257 EH--------PE-K-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 257 ~~--------~~-~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.. .+ + ....+.|.|.....+|.|.|+|.|.|....
T Consensus 173 ~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 173 PEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred cCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 00 11 1 123467889999989999999999998743
No 291
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.73 E-value=3.6e-16 Score=125.30 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=110.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.+..+.+|++|+|.|.+.+ .+.+.|+|.. ..+... ....+.....+.......|
T Consensus 4 ~~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 83 (256)
T 3umt_A 4 VQLQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYL 83 (256)
T ss_dssp CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred ceEEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEE
Confidence 4566677788999999999999543 5789999842 222110 0112222333333556778
Q ss_pred EEeeccc--CcceEEEeeccCC----c----cceee--------------------eeeeCCceeEEecCCcEEEEEEee
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPR----M----NAITG--------------------NYDIEPKYKVFEYRVPFTLKCNVT 132 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~----~----~~~~~--------------------~~~~~~~~~~~~~g~~v~l~C~~~ 132 (323)
.|.+++. +|.|+|.+.+... . ..+.+ .+...+....+.+|++++|.|.+.
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~ 163 (256)
T 3umt_A 84 ELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRAS 163 (256)
T ss_dssp EECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEES
T ss_pred EECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEe
Confidence 8887754 9999999987611 1 11111 111234445678899999999999
Q ss_pred cCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235 133 SPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ 198 (323)
Q Consensus 133 ~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 198 (323)
+.+ .+.+.|+|+ +..... ......++. .....|.|.+++.+|+|.|+|.+ .+.... .....
T Consensus 164 ~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~-~fg~g 238 (256)
T 3umt_A 164 QDI---GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ-YASSPP-TFGGG 238 (256)
T ss_dssp SCC---TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE-CSSSSC-EECCC
T ss_pred cCC---CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE-eeCCCc-EECCC
Confidence 977 569999984 222110 011134443 34557999999999999999999 664221 22333
Q ss_pred eeeEEEe
Q psy15235 199 ADFDVIM 205 (323)
Q Consensus 199 ~~l~v~~ 205 (323)
..|.|..
T Consensus 239 t~L~V~~ 245 (256)
T 3umt_A 239 TKLEIKR 245 (256)
T ss_dssp EEEEEC-
T ss_pred EEEEEEC
Confidence 4455544
No 292
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.73 E-value=1.4e-16 Score=130.11 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=104.8
Q ss_pred cCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCe
Q psy15235 20 SADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDN 79 (323)
Q Consensus 20 ~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~ 79 (323)
.....+..+..+.+.+|++|+|.|.+.. .+.+.|+|++ ..+.. . ....+.....+.....
T Consensus 21 ~~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 100 (291)
T 2gki_A 21 AREVQLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSST 100 (291)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTE
T ss_pred cccEEEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCE
Confidence 4566677778889999999999999543 4689999953 22211 0 0111222222223456
Q ss_pred EEEEEeecc--cCcceEEEeeccC-C--c------cceeeee--------------------eeCCceeEEecCCcEEEE
Q psy15235 80 FKYSIHEAI--LESGYVQSSLFIP-R--M------NAITGNY--------------------DIEPKYKVFEYRVPFTLK 128 (323)
Q Consensus 80 ~~l~i~~~~--~~G~Y~C~~~~~~-~--~------~~~~~~~--------------------~~~~~~~~~~~g~~v~l~ 128 (323)
..|.|.+++ |+|.|+|.+.+.. + . ..+.+.. ...+....+.+|++++|.
T Consensus 101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~ 180 (291)
T 2gki_A 101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS 180 (291)
T ss_dssp EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence 778888776 4999999998763 1 0 0111111 112334557899999999
Q ss_pred EEeecCCCCCCc------eEEEEECC--eecc---cc-----ccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 129 CNVTSPPPGDDY------QIVWYKGN--KSIT---EA-----TELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 129 C~~~~~~~~~~~------~i~W~~~~--~~~~---~~-----~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
|.+.+.+ .+ .+.|+|+. .... .. .....++. .....|+|.+++.+|+|.|+|.+ .+
T Consensus 181 C~~~~~~---~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~~ 256 (291)
T 2gki_A 181 CKSSQSL---FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQ-SY 256 (291)
T ss_dssp EEESSCC---EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-EE
T ss_pred EEcCCcc---ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEE-cc
Confidence 9998876 44 89999963 2111 00 01134443 23468999999999999999999 55
Q ss_pred C
Q psy15235 189 K 189 (323)
Q Consensus 189 ~ 189 (323)
.
T Consensus 257 ~ 257 (291)
T 2gki_A 257 Y 257 (291)
T ss_dssp T
T ss_pred C
Confidence 4
No 293
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.73 E-value=5.2e-16 Score=124.32 Aligned_cols=163 Identities=14% Similarity=0.200 Sum_probs=105.8
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e-----------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S-----------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+ +..+.. . ....+..+..+...+...|.
T Consensus 3 ~l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (256)
T 1nqb_A 3 QLQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ 82 (256)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence 456778889999999999999543 468999994 332211 0 01122222222234567788
Q ss_pred Eeeccc--CcceEEEeeccCCc---c----ceee------eeeeCCceeEEecCCcEEEEEEeecCCCCCC----ceEEE
Q psy15235 84 IHEAIL--ESGYVQSSLFIPRM---N----AITG------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDD----YQIVW 144 (323)
Q Consensus 84 i~~~~~--~G~Y~C~~~~~~~~---~----~~~~------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~----~~i~W 144 (323)
|.+++. +|.|+|.+.+..+. . .... .+...|....+.+|++++|.|.+.+.++ . +.+.|
T Consensus 83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~~~v~W 160 (256)
T 1nqb_A 83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIV--HSNGNTYLEW 160 (256)
T ss_dssp ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCB--CTTSCBCEEE
T ss_pred ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCccc--ccccceEEEE
Confidence 887764 99999999886431 1 1111 1111344455788999999999998773 2 49999
Q ss_pred EE--CCeeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 145 YK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 145 ~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+| ++..+.. ......++. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~~~ 218 (256)
T 1nqb_A 161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQ-GSH 218 (256)
T ss_dssp EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSS
T ss_pred EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEE-ccC
Confidence 99 5554311 001123443 34568999999999999999999 654
No 294
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.73 E-value=6.4e-17 Score=129.80 Aligned_cols=172 Identities=18% Similarity=0.264 Sum_probs=110.6
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEe
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~ 171 (323)
.|....+.+|++++|.|.+.+.+.. .+.+.|||+. ..+.. ......|+. .....|.|.
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 90 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFT-SYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS 90 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccC-CceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence 3556678899999999999875421 3689999863 21110 011245654 135689999
Q ss_pred eeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECC
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGN 243 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~ 243 (323)
+++.+|+|.|.|.+ .+..+.. .......|.|.. +|.+. ..+...+..|+.++|.|.+.+. |.+ .+.|++++
T Consensus 91 ~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g 169 (261)
T 2xqy_G 91 SLTSEDSAVYYCGR-LGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 169 (261)
T ss_dssp SCCGGGCEEEEEEE-ECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCeEEEEEE-ecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence 99999999999999 5542100 111234666654 34444 2323346679999999999875 766 89999988
Q ss_pred eeeecc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 244 DTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
..+... ..... . .......+.|+|..+..+| |.|+|.|.|...
T Consensus 170 ~~~~~~~~~~~~-~--~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~ 213 (261)
T 2xqy_G 170 LSSGVHTFPAVL-Q--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS 213 (261)
T ss_dssp CCTTEEECCCEE-E--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred CcCceEecCcee-c--CCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence 654211 11110 0 1011135789999988888 999999999873
No 295
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.73 E-value=8e-17 Score=125.59 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=105.9
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE-e-----ceeEEEEeee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT-Q-----SKDSITIRKT 173 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~-~-----~~~~l~i~~~ 173 (323)
|....+.+|++++|.|.+.+.+.. .+.+.|||+. .... . ...+.+|+. . ....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTT-SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred CCCeeecCCCcEEEEEEECCCcCC-CCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 344567889999999999875421 4789999852 2111 0 011245554 1 2458999999
Q ss_pred ecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCee
Q psy15235 174 TVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDT 245 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~ 245 (323)
+.+|+|.|.|.+ .+..+.. .......|.|.. +|.+.. ++...+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 86 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 164 (215)
T 1c5d_H 86 QTEDTAIYFCTR-EDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS 164 (215)
T ss_dssp CGGGCEEEEEEE-CCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred CcccCEEEEEEE-ecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence 999999999999 6653111 122335666663 354442 223345689999999999876 877 8999998865
Q ss_pred eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+.......... .......+.|+ ....+| |.|+|.|.|..|.
T Consensus 165 ~~~~~~~~~~~--~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~ 205 (215)
T 1c5d_H 165 SDVHTFPAVLQ--SGLYTLTSSVT--SSTWPS-QTVTCNVAHPASS 205 (215)
T ss_dssp CSCCBCCCEEE--TTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGT
T ss_pred CceEecCcccC--CCCEEEEEEEe--cccCCC-CeEEEEEEeCCCC
Confidence 32111100000 00000123344 444456 9999999999965
No 296
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.73 E-value=2.8e-16 Score=123.05 Aligned_cols=169 Identities=12% Similarity=0.171 Sum_probs=100.6
Q ss_pred eceEEecCCcEEEEEEec--c-----CceEEEEEcCccceeec------------cCcceEEEee-eeCCeEEEEEeecc
Q psy15235 29 GDTEIMEGAPINISCILT--I-----FEQVKWQLNGRNINQSS------------VDSGFAATAN-LTEDNFKYSIHEAI 88 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g~~~~~~~------------~~~~~~~~~~-~~~~~~~l~i~~~~ 88 (323)
.++.+.+|++++|.|.+. + ...+.|+|++..+.... ...+..+..+ ...++..|.|.+++
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 88 (222)
T 3sbw_C 9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK 88 (222)
T ss_dssp SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence 456789999999999953 3 23899999764332210 0011111100 12356678888776
Q ss_pred c--CcceEEEeeccCCccceeeeeee-----CCce---eEEecCCcEEEEEEeecCCCCCCceEEEEEC-Ceeccccccc
Q psy15235 89 L--ESGYVQSSLFIPRMNAITGNYDI-----EPKY---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATEL 157 (323)
Q Consensus 89 ~--~G~Y~C~~~~~~~~~~~~~~~~~-----~~~~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~ 157 (323)
. +|.|+|.+.+ .+.......+.+ .+.. ..+..|+.++|.|.+.+.| .+.+.|+++ +..+..
T Consensus 89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P---~p~i~W~~~~g~~~~~---- 160 (222)
T 3sbw_C 89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYP---KAEVIWTSSDHQVLSG---- 160 (222)
T ss_dssp GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBS---CCEEEEEETTCCEECC----
T ss_pred cccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCC---CCeEEEEECCCceecC----
Confidence 5 9999999987 333322222322 1111 1356799999999999977 789999998 555443
Q ss_pred cCcE--E-eceeE---EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235 158 SGRL--T-QSKDS---ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208 (323)
Q Consensus 158 ~~~~--~-~~~~~---l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~ 208 (323)
.... . ..... ..+..+..+|.|.|+|.| .|..+ .....+.|.|..+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a-~n~~g--~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF-RRLDP--EENHTAELVIPELPL 214 (222)
T ss_dssp EEEEEECC----CEEEEEEEEEECCTTCEEEEEE-EETTT--TEEEEEEEECCCC--
T ss_pred ccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEE-EeCcc--ceeeEEEEEecCCcc
Confidence 1111 1 11111 222245678999999999 77743 345556666655554
No 297
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.72 E-value=2.3e-16 Score=126.54 Aligned_cols=163 Identities=13% Similarity=0.218 Sum_probs=105.0
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee-------------ccCcceEEEeeeeCCeEEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS-------------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~-------------~~~~~~~~~~~~~~~~~~l~ 83 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+ +..+... ....+..+..+...+...|.
T Consensus 2 v~~~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 81 (257)
T 1f3r_B 2 VQLLESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLK 81 (257)
T ss_dssp CEEEEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEE
Confidence 3566777788999999999999542 578999996 3222110 01122222222235567788
Q ss_pred Eeecc--cCcceEEEeeccCC-------c----c--ceeeee-----------------ee--CCceeEEecCCcEEEEE
Q psy15235 84 IHEAI--LESGYVQSSLFIPR-------M----N--AITGNY-----------------DI--EPKYKVFEYRVPFTLKC 129 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~~~-------~----~--~~~~~~-----------------~~--~~~~~~~~~g~~v~l~C 129 (323)
|.+++ |+|.|+|.+.+..+ . . .+.+.. .+ .+....+.+|++++|.|
T Consensus 82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C 161 (257)
T 1f3r_B 82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSC 161 (257)
T ss_dssp EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEE
T ss_pred ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEE
Confidence 88776 49999999987632 1 0 111110 01 22233467899999999
Q ss_pred EeecCCCCCCceEEEEE--CCeecccc--------ccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 130 NVTSPPPGDDYQIVWYK--GNKSITEA--------TELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 130 ~~~~~~~~~~~~i~W~~--~~~~~~~~--------~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+.+.+ .+.+.|+| ++..+... .....++. .....|.|.+++.+|+|.|+|.+ .|.
T Consensus 162 ~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~ 231 (257)
T 1f3r_B 162 KGSQNI---NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ-YNN 231 (257)
T ss_dssp ECSSCC---BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE-ESS
T ss_pred EECCcC---CCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEE-eCC
Confidence 999887 57999999 55433110 01123443 34568999999999999999999 665
No 298
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.72 E-value=1.1e-16 Score=124.41 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=101.2
Q ss_pred eeceEEecCCcEEEEEEeccCceEEEEEc--CccceeeccC-------cceEEEeeeeCCeEEEEEeeccc--CcceEEE
Q psy15235 28 FGDTEIMEGAPINISCILTIFEQVKWQLN--GRNINQSSVD-------SGFAATANLTEDNFKYSIHEAIL--ESGYVQS 96 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~--g~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~ 96 (323)
+..+.+.+|++|+|.|.+.+.+.+.|+|+ +..+...... ....+..........|.|.+++. +|.|+|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 7 PPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp CSEEEECTTCEEEEEEECCCSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred CceEEEcCCCCEEEEEEECCCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 34678999999999999667789999994 3332211000 00112222345667788877654 9999999
Q ss_pred eeccCC--cc--ceeeeee----eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-----
Q psy15235 97 SLFIPR--MN--AITGNYD----IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL----- 157 (323)
Q Consensus 97 ~~~~~~--~~--~~~~~~~----~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~----- 157 (323)
+.+..+ .. .....+. ..|.+... ..|+.++|.|.+.+.+|. .+.+.|+++|..+......
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~ 165 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPG-AVTVAWKADSSPVKAGVETTTPSK 165 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEE
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCC-CeEEEEEECCeecCCCcccCCceE
Confidence 988655 11 1111111 12222221 259999999999885432 4799999999887541111
Q ss_pred --cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 158 --SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 158 --~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+..+ .....|.|.++..+|+|.|+|.+ .|.
T Consensus 166 ~~~~~~-~~~s~L~i~~~~~~d~g~Y~C~v-~~~ 197 (211)
T 3tv3_L 166 QSNNKY-AASSYLSLTPEQWKSHRSYSCQV-THE 197 (211)
T ss_dssp CTTSSE-EEEEEEEECHHHHHHSSCEEEEE-EET
T ss_pred CCCCCE-EEEEEEEEcHHHhCCCCeEEEEE-EEC
Confidence 1111 22356889888888999999999 666
No 299
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.72 E-value=5e-16 Score=124.24 Aligned_cols=176 Identities=14% Similarity=0.200 Sum_probs=109.5
Q ss_pred EEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEEE
Q psy15235 25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYSI 84 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i 84 (323)
+..+.++.+.+|++|+|.|.+.+ .+.+.|+|. +..+... ....+.....+.....+.|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 84 (253)
T 3uzq_A 5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL 84 (253)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence 34567788999999999999543 579999993 2222111 011223333333345677888
Q ss_pred eeccc--CcceEEEeeccCCcc-----ceee-------------------eeeeCCceeEEecCCcEEEEEEeecCCCCC
Q psy15235 85 HEAIL--ESGYVQSSLFIPRMN-----AITG-------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGD 138 (323)
Q Consensus 85 ~~~~~--~G~Y~C~~~~~~~~~-----~~~~-------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~ 138 (323)
.+++. +|.|+|.+.+..... .+.+ .+...+....+.+|++++|.|.+.+.+
T Consensus 85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~--- 161 (253)
T 3uzq_A 85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV--- 161 (253)
T ss_dssp CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC---
T ss_pred CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc---
Confidence 87754 999999998743221 1111 111234445678899999999999876
Q ss_pred Cc----eEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeee
Q psy15235 139 DY----QIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQAD 200 (323)
Q Consensus 139 ~~----~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~ 200 (323)
.+ .+.|+|+ +..... ......++. .....|.|.+++.+|+|.|.|.+ .+.... ....-..
T Consensus 162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~n~~~~-~fg~gt~ 239 (253)
T 3uzq_A 162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR-SNEVPW-TFGGGTK 239 (253)
T ss_dssp EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSSSSC-CBCCCEE
T ss_pred ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE-ccCCCc-EECCCEE
Confidence 44 8999984 222110 001123443 33557999999999999999999 665322 2223334
Q ss_pred eEEEe
Q psy15235 201 FDVIM 205 (323)
Q Consensus 201 l~v~~ 205 (323)
|.|..
T Consensus 240 l~v~~ 244 (253)
T 3uzq_A 240 LEIKR 244 (253)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 55544
No 300
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.72 E-value=4.1e-16 Score=121.30 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=100.5
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEEEEEeeccc--Ccc
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFKYSIHEAIL--ESG 92 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~--~G~ 92 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+|++ ..+.... ...+ +......+...|.|.+++. +|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G~ 85 (213)
T 3nl4_L 8 PASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSR--FKGSGSGTDFTLTISDLECADAAT 85 (213)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTT--EEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCcc--EEEecCCCEEEEEECCCChHHCEE
Confidence 5678899999999999954 46799999953 2221110 0112 2222446677788887765 999
Q ss_pred eEEEeeccCCc-----c--ceeeeeee-CCceeE------EecCCcEEEEEEeec-CCCCCCceEEEEECCeeccccc--
Q psy15235 93 YVQSSLFIPRM-----N--AITGNYDI-EPKYKV------FEYRVPFTLKCNVTS-PPPGDDYQIVWYKGNKSITEAT-- 155 (323)
Q Consensus 93 Y~C~~~~~~~~-----~--~~~~~~~~-~~~~~~------~~~g~~v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~~~-- 155 (323)
|+|.+.+..+. . .+.+.... .|.+.. +..|+.++|.|.+.+ .| .+.|.|+++|..+....
T Consensus 86 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P---~~~v~W~k~g~~~~~~~~~ 162 (213)
T 3nl4_L 86 YYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFP---DVTVTWEVDGTTQTTGIEN 162 (213)
T ss_dssp EEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBS---CCEEEEEETTEECCSSEEE
T ss_pred EEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccC---CcEEEEEeCCccCCCCeec
Confidence 99999876542 1 11111111 233322 235899999999998 55 68999999998875411
Q ss_pred ------cccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235 156 ------ELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 156 ------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
.....+ .....|.|.++..+|+|.|+|.|
T Consensus 163 ~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~Y~C~a 197 (213)
T 3nl4_L 163 SKTPQNSADCTY-NLSSTLTLTSTEYNSHKEYTCKV 197 (213)
T ss_dssp EECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE
T ss_pred ccCcccCCCCeE-EEEEEEEecHHHcCCCCeEEEEE
Confidence 011122 23467999999999999999999
No 301
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.72 E-value=4.8e-17 Score=130.02 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=95.7
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc----c---------cccccCcEE------eceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT----E---------ATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~----~---------~~~~~~~~~------~~~~~l~i~~~ 173 (323)
....+.+|++++|.|.+.+.++. .+.+.|||.. .... . ...+.+|+. .....|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 8 GGGLVKPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp CCEEECTTCEEEEEEEEESSCGG-GCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred CCEEEcCCCcEEEEEEeccccCC-CceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 34568899999999999875421 3689999853 2110 0 012345655 13468999999
Q ss_pred ecCCCeeEEEEEEcCCCCC---------C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-
Q psy15235 174 TVDDAGQYSCRLIDPKSTN---------T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP- 235 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~- 235 (323)
+.+|+|.|.|.+ .+..+. . .......|.|.. +|.+.. .+...+.+|+.++|.|.+.|. |.+
T Consensus 87 ~~~DsG~Y~C~~-~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 87 RAEDTAVYYCAR-PYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CGGGCEEEEEEE-ECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred ChhhCEEEEEEE-ecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence 999999999999 655320 0 111234666654 355542 223345689999999999875 777
Q ss_pred cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 236 TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 236 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.|++++..+.......... .++ ....+.|+|.++..+| |.|+|.|.|...
T Consensus 166 ~v~W~k~g~~~~~~~~~~~~~--~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~ 218 (257)
T 3bn9_D 166 TVSWNSGALTSGVHTFPAVLQ--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 218 (257)
T ss_dssp EEEETTTTCCSSCEECCCEEC--TTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred EEEEeeCCCcCCcEecCCeEc--CCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence 899999987532110000000 111 1134678888888878 999999999773
No 302
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.72 E-value=6.9e-16 Score=122.22 Aligned_cols=159 Identities=17% Similarity=0.265 Sum_probs=99.8
Q ss_pred EEeeceEEecCCcEEEEEE-eccCceEEEEEc--Ccccee------------eccCcceEEEeeeeCCeEEEEEeecc--
Q psy15235 26 TYFGDTEIMEGAPINISCI-LTIFEQVKWQLN--GRNINQ------------SSVDSGFAATANLTEDNFKYSIHEAI-- 88 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~-~~~~~~v~W~~~--g~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~-- 88 (323)
..+..+.+.+|++|+|.|. ..+.+.+.|+|+ +..+.. .....+..+.. .......|.|.+++
T Consensus 5 q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~ 83 (238)
T 2p1y_A 5 QSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELATPS 83 (238)
T ss_dssp EECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCCGG
T ss_pred ECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCCcc
Confidence 3466788999999999999 446689999995 222111 00111221111 22345567777765
Q ss_pred cCcceEEEeeccCCc---------cceee----------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEE
Q psy15235 89 LESGYVQSSLFIPRM---------NAITG----------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIV 143 (323)
Q Consensus 89 ~~G~Y~C~~~~~~~~---------~~~~~----------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~ 143 (323)
|+|.|+|.+.+..+. ..+.+ .+...+....+.+|++++|.|.+.+.+ .+.+.
T Consensus 84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p---~~~i~ 160 (238)
T 2p1y_A 84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSA---FDYFP 160 (238)
T ss_dssp GCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTT---CCEEE
T ss_pred cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCC---CCcEE
Confidence 499999999876421 11111 111124444578999999999999887 67999
Q ss_pred EEECCe--e---ccc-----cccccCcEEe------ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 144 WYKGNK--S---ITE-----ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 144 W~~~~~--~---~~~-----~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|+|++. . +.. ......++.. ....|.|.+++.+|+|.|+|.+ .|.
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~ 221 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA-IDT 221 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEE-EET
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEE-eeC
Confidence 999641 1 100 0011334431 2468999999999999999999 554
No 303
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.72 E-value=1.2e-16 Score=126.20 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=105.8
Q ss_pred eeEEecCCcEEEEEEeecCCCC-CCceEEEEECC--ee---cc----c--------cccccCcEE------eceeEEEEe
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGN--KS---IT----E--------ATELSGRLT------QSKDSITIR 171 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~--~~---~~----~--------~~~~~~~~~------~~~~~l~i~ 171 (323)
...+.+|++++|.|.+.+.+.. ....|.||+.. .. +. . ...+.+|+. .....|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 88 (232)
T 3qhz_H 9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT 88 (232)
T ss_dssp CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence 3567889999999999764210 02345999832 11 10 0 012234554 234579999
Q ss_pred eeecCCCeeEEEEEEcCCCCC------CCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCC--CcEE
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTN------TTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPP--PTVE 238 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~------~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~--~~~~ 238 (323)
+++.+|+|.|.|.+ .+..+. ........+.|. .+|.+. ..+...+..|+.++|.|.+.+.++ ..+.
T Consensus 89 ~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~ 167 (232)
T 3qhz_H 89 NMDPVDTATYYCAR-TLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 167 (232)
T ss_dssp SCCGGGCEEEEEEE-ECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred cCChhhCEEEEEEE-eeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence 99999999999999 543100 112223345554 245554 344445667999999999987533 3588
Q ss_pred EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|++++..+.......... ........+.|+|.....+| |.|+|.|.|..+. ......|.+
T Consensus 168 W~~~g~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~----~~~~~~l~~ 227 (232)
T 3qhz_H 168 WNSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEP 227 (232)
T ss_dssp EGGGTBCTTEEECCCEEC-TTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT----EEEEEECCC
T ss_pred EEECCEecceeeccceeC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC----ccEEEEeCC
Confidence 999886431110000000 00011134679999999889 9999999999855 555555443
No 304
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.72 E-value=6.7e-17 Score=110.83 Aligned_cols=94 Identities=29% Similarity=0.497 Sum_probs=74.6
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+.+..+.+|+.+.|.|.+.|+|.|.+.|++||..+..+ .++.+.. ++ ...+|.|.+++.+|+|.|+|.
T Consensus 13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~ 87 (107)
T 3knb_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-ERLSFPA--DG--AEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEECCE--ET--TEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce-eeEEEee--cC--ceEEEEEecCChhhCEEEEEE
Confidence 34433 455678899999999999999999999999999988654 4444431 11 356899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEccee
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
|.|..|. ....+.|.|.++|
T Consensus 88 a~N~~G~----~~~~~~l~V~~pP 107 (107)
T 3knb_B 88 ARNAAGE----AYAAAAVTVLEPP 107 (107)
T ss_dssp EEETTEE----EEEEEEEEEEC--
T ss_pred EEECCCE----EEEEEEEEEEcCC
Confidence 9999976 7888889888765
No 305
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.72 E-value=7.7e-17 Score=109.16 Aligned_cols=93 Identities=24% Similarity=0.449 Sum_probs=74.5
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++|+..+.... .++.+.. .+ ...+|.|.+++.+|+|.|+|
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TD--DLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE--CS--SEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec--cc--ceEEEEEcCCCccCCEEEEE
Confidence 45444 4556788999999999999999999999999999886533 3454442 11 35789999999999999999
Q ss_pred EEeecccCCCCCceeEEEEEEcc
Q psy15235 284 HGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
.|.|..|. ....+.|.|++
T Consensus 81 ~a~N~~G~----~~~~~~l~V~~ 99 (100)
T 3knb_A 81 SLGNEFGS----DSATVNIHIRS 99 (100)
T ss_dssp EEEETTEE----EEEEEEEEEEC
T ss_pred EEEECCCE----EEEEEEEEEEE
Confidence 99999966 78888888864
No 306
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.72 E-value=7.7e-16 Score=120.08 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=100.4
Q ss_pred EeeceEEecCCcEEEEEE-ecc---CceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeeccc--Cc
Q psy15235 27 YFGDTEIMEGAPINISCI-LTI---FEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEAIL--ES 91 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~-~~~---~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~--~G 91 (323)
.|.++.+.+|++|+|.|. ... .+.+.|+|++ ..+.... ......+......+...|.|.+++. +|
T Consensus 6 qp~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 85 (216)
T 2xzc_L 6 QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (216)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence 466688999999999999 332 4689999954 2221100 0001112223345667788887754 99
Q ss_pred ceEEEeeccCC-c---cceeeeee---eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-ccc
Q psy15235 92 GYVQSSLFIPR-M---NAITGNYD---IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-TEL 157 (323)
Q Consensus 92 ~Y~C~~~~~~~-~---~~~~~~~~---~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~~ 157 (323)
.|+|.+.+..+ . ......+. ..|.+... ..|+.++|.|.+.+.+|. ...|.|+++|..+... ...
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~ 164 (216)
T 2xzc_L 86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQES 164 (216)
T ss_dssp EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEE
T ss_pred EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCC-ceEEEEEECCeecCCCeeEe
Confidence 99999988654 1 11111111 12333222 248899999999985431 2499999999987652 000
Q ss_pred -------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 158 -------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 158 -------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
++.+ .....|.|..+..+|+|.|+|.| .|..
T Consensus 165 ~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~ 202 (216)
T 2xzc_L 165 VTEQDSKDSTY-SLSSTLTLSKADYEKHKVYACEV-THQG 202 (216)
T ss_dssp ECCCCTTTCCE-EEEEEEEEEHHHHTTCCEEEEEE-ECTT
T ss_pred cCcccCCCCCE-EEEEEEEECHHHhCCCCcEEEEE-EcCC
Confidence 0111 12347899999999999999999 6763
No 307
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.72 E-value=1.9e-16 Score=123.09 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=102.3
Q ss_pred eEEEeeceEEecCCcEEEEEEec--c---CceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeec
Q psy15235 24 KITYFGDTEIMEGAPINISCILT--I---FEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEA 87 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~--~---~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~ 87 (323)
.+..+.++.+.+|++|+|.|.+. + .+.+.|+|++ ..+... ....+ +......+...|.|.++
T Consensus 3 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v 80 (212)
T 1q0x_L 3 VVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPAR--FSGSLIGDKAALTITGA 80 (212)
T ss_dssp CEEECSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSC
T ss_pred eEECCCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCccccc--EEEEeeCCEEEEEECCC
Confidence 34457778899999999999954 3 3689999963 332110 01112 22233456677888877
Q ss_pred cc--CcceEEEeeccCCcc---ceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235 88 IL--ESGYVQSSLFIPRMN---AITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 88 ~~--~G~Y~C~~~~~~~~~---~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~ 152 (323)
+. +|.|+|.+.+..+.. .....+. ..|.+.. ...|+.++|.|.+.+.+|. ...|.|+++|..+.
T Consensus 81 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~l~ 159 (212)
T 1q0x_L 81 QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPG-VVTVDWKVDGTPVT 159 (212)
T ss_dssp CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEEC
T ss_pred CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCC-CeEEEEEECCEeCC
Confidence 54 999999998765321 1111111 1233322 1258899999999886541 24999999998876
Q ss_pred ccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 153 EATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 153 ~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.......... .....|.|.....+|+|.|+|.| .|.
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a-~n~ 201 (212)
T 1q0x_L 160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQV-THE 201 (212)
T ss_dssp TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEE-EET
T ss_pred CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEE-EeC
Confidence 5211011111 22346889998899999999999 665
No 308
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.71 E-value=3.4e-15 Score=115.31 Aligned_cols=230 Identities=17% Similarity=0.283 Sum_probs=146.4
Q ss_pred eeceEEecCCcEEEEEEe---cc---CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235 28 FGDTEIMEGAPINISCIL---TI---FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP 101 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~---~~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~ 101 (323)
|.-..+..|+.++|+|.+ .| +..++|+|+|..+... ...+.+......++|.|+|.+++..
T Consensus 9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------------T~tLti~s~t~sdSG~YqCvVTDa~ 75 (304)
T 3shs_A 9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------------TATLTVADATSENAGSYKVTVQDTD 75 (304)
T ss_dssp ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------------cceEEeeeccccCCeEEEEEEEECC
Confidence 455678999999999993 23 3489999999776543 2333333334455999999998765
Q ss_pred Ccccee----------eeeee-CCceeEEecCCcEEEEEEe--ecCC-CCC--CceEEEEECCeeccccccccCcEEece
Q psy15235 102 RMNAIT----------GNYDI-EPKYKVFEYRVPFTLKCNV--TSPP-PGD--DYQIVWYKGNKSITEATELSGRLTQSK 165 (323)
Q Consensus 102 ~~~~~~----------~~~~~-~~~~~~~~~g~~v~l~C~~--~~~~-~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+..... +.+.+ .|.......|..+.|.+.+ .+.. |.. ..+++|++++..+.. .
T Consensus 76 Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-----------A 144 (304)
T 3shs_A 76 TMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-----------T 144 (304)
T ss_dssp TCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-----------S
T ss_pred CCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-----------c
Confidence 543111 11222 3444445678899999887 5433 211 369999999988754 3
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-eeeeceeEEeeCCeEEEEEEEe----c----CCCC-
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVV----G----SPPP- 235 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~g~~~~l~C~~~----g----~p~~- 235 (323)
..+++......++|.|+|++ .+..+....+....+.+...+. .....+..+..|+.+.|.-.+. | .|..
T Consensus 145 q~lT~sS~TateaG~YtV~V-Tn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (304)
T 3shs_A 145 QDITIQEFTADKNGVYTVKV-WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLT 223 (304)
T ss_dssp SEEEECSCCGGGCEEEEEEE-ESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEE
T ss_pred cccceeeEEecCCeEEEEEE-EcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceE
Confidence 46777778888999999999 6664444455555555544332 2234456788899888877663 2 2333
Q ss_pred -cEEEEE--CCee---eec-----cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 236 -TVEWRI--GNDT---YFR-----SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 236 -~~~W~~--~~~~---~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.||. .|+. +.. .-..+.+. ....|.-.....+|...|.|.+.--.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 3shs_A 224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSIT-------PDGHLFKESATYDDTAKFWCVAKLYQ 281 (304)
T ss_dssp EEEEEEEECTTCCSCEEEESSSEECGGGEEEC-------TTSCEEESSCCGGGCEEEEEEEEEEE
T ss_pred EEEEEEEeecCccCchhhhhhhhhhhccceeC-------CCcceeecccccccchheeeHHHHHH
Confidence 478875 2321 111 11223333 35667777788899999999998544
No 309
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.71 E-value=2.9e-16 Score=125.72 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=102.2
Q ss_pred EEEeeceEEecCCcEEEEEEec--c-----CceEEEEEcC--cccee---------eccCcceEEEeeeeCCeEEEEEee
Q psy15235 25 ITYFGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQ---------SSVDSGFAATANLTEDNFKYSIHE 86 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 86 (323)
...+..+.+.+|++++|.|.+. + .+.+.|+|++ ..+.. .....+ +..........|.|.+
T Consensus 42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~ 119 (254)
T 2c1o_A 42 TQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDR--FTGSGSGTDFTLKISR 119 (254)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTT--EEEEEETTEEEEEESS
T ss_pred EeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccce--EEEecCCCEEEEEECc
Confidence 3446778899999999999954 3 2789999843 33321 001111 2223345667788887
Q ss_pred ccc--CcceEEEeeccCCccc---eeeeeee---CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235 87 AIL--ESGYVQSSLFIPRMNA---ITGNYDI---EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 87 ~~~--~G~Y~C~~~~~~~~~~---~~~~~~~---~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~ 152 (323)
++. +|.|+|.+.+...... ....+.. .|.+... ..|+.++|.|.+.+.+|. .+.+.|+++|..+.
T Consensus 120 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~ 198 (254)
T 2c1o_A 120 VEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQ 198 (254)
T ss_dssp CCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEESSSEEC
T ss_pred CCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCC-CcEEEEEECCCccc
Confidence 754 9999999987643211 0111111 2333221 247899999999885432 35799999998876
Q ss_pred cc-cc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 153 EA-TE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 153 ~~-~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.. .. .++.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus 199 ~~~~~~~~~~~~~~g~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~ 242 (254)
T 2c1o_A 199 NGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKT 242 (254)
T ss_dssp TTEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-ECTT
T ss_pred CcceeccccccCCCCcE-EEEEEEEeccccccCCCeEEEEE-EcCC
Confidence 52 00 01111 12468999999999999999999 7763
No 310
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.71 E-value=9.9e-17 Score=125.67 Aligned_cols=173 Identities=15% Similarity=0.228 Sum_probs=100.8
Q ss_pred eceEEecCCcEEEEEEeccC-------ceEEEEEcCccceeeccCcceE--------EEee---eeCCeEEEEEeecc--
Q psy15235 29 GDTEIMEGAPINISCILTIF-------EQVKWQLNGRNINQSSVDSGFA--------ATAN---LTEDNFKYSIHEAI-- 88 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~~~-------~~v~W~~~g~~~~~~~~~~~~~--------~~~~---~~~~~~~l~i~~~~-- 88 (323)
.++.+.+|++++|.|.+.+. +.+.|++++..........+.. .... ...++..|.|.+++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 45678999999999995432 6899999875542211111110 0010 01234556666655
Q ss_pred cCcceEEEeeccCCcc-c--ee-------eeeeeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEE-CCeecccccc
Q psy15235 89 LESGYVQSSLFIPRMN-A--IT-------GNYDIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYK-GNKSITEATE 156 (323)
Q Consensus 89 ~~G~Y~C~~~~~~~~~-~--~~-------~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~-~~~~~~~~~~ 156 (323)
|+|.|+|.+.+..... . +. +.+...+ ...+..|+.++|.|.+ .+.| .+.+.|++ ++..+.....
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P---~~~v~W~~~~~~~~~~~~~ 158 (222)
T 4i0k_A 83 DEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYP---EAEVFWKDGQGVPLTGNVT 158 (222)
T ss_dssp GCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBS---CCEEEEECTTSCBCCSEEE
T ss_pred cCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccC---CCeEEEEcCCCccCCCCcc
Confidence 4999999998653221 1 11 1222222 1235679999999999 6666 68999999 4555433000
Q ss_pred ccCcEE---eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235 157 LSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209 (323)
Q Consensus 157 ~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~ 209 (323)
..... .....|.|.++..+|+|.|+|.+ .|..+ .....+.|.|..+|..
T Consensus 159 -~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 159 -TSQMANERGLFDVHSVLRVVLGANGTYSCLV-RNPVL--QQDAHGSVTITGQPLT 210 (222)
T ss_dssp -EEEEECTTSCEEEEEEEEEECCTTCEEEEEE-EETTT--TEEEEEEEECCC----
T ss_pred -eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEE-ECCCC--CCceEEEEEEeCCccc
Confidence 00111 11234789999999999999999 77743 3566667777666644
No 311
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.71 E-value=1.8e-16 Score=125.66 Aligned_cols=184 Identities=19% Similarity=0.228 Sum_probs=109.5
Q ss_pred CceeEEecCCcEEEEEEeecCCCC-CCceEEEEECC--ee---c---c------c------cccccCcEE------ecee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGN--KS---I---T------E------ATELSGRLT------QSKD 166 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~--~~---~---~------~------~~~~~~~~~------~~~~ 166 (323)
+....+.+|++++|.|.+.+.+.. ....+.||+.. .. + . . .....+|+. ....
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 344568889999999999875411 02489999832 11 1 0 0 012245554 2345
Q ss_pred EEEEeeeecCCCeeEEEEEEcCCCC-----------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEe
Q psy15235 167 SITIRKTTVDDAGQYSCRLIDPKST-----------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVV 230 (323)
Q Consensus 167 ~l~i~~~~~~d~G~y~C~~~~~~~~-----------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~ 230 (323)
.|.|.+++.+|+|.|.|.+ .+..+ .........+.|. .+|.+. .++...+..|+.+.|.|.+.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~-~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCAR-FGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEECSCCGGGCEEEEEEE-EEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEE-ecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence 6999999999999999999 43310 0011122345553 244444 33344456799999999997
Q ss_pred c-CCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 231 G-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 231 g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
+ .|++ .+.|++++..+........ ..........+.|+|.....+| |.|+|.|.|..+. ......|.+
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~l~~ 235 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEP 235 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT----EEEEEECCC
T ss_pred eEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC----ceEEEEecc
Confidence 7 4544 5899998864321110000 1000011234679999998888 9999999999855 444444433
No 312
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.71 E-value=1.7e-16 Score=123.57 Aligned_cols=159 Identities=12% Similarity=0.170 Sum_probs=99.3
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--CcceE
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--ESGYV 94 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~ 94 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+|.+ ........ .....+......+...|.|.+++. +|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 6678899999999999954 46799999843 21111000 001112222445677888888764 99999
Q ss_pred EEeeccCCcc---ceeeeee---eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc-c-----
Q psy15235 95 QSSLFIPRMN---AITGNYD---IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-E----- 156 (323)
Q Consensus 95 C~~~~~~~~~---~~~~~~~---~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~-~----- 156 (323)
|.+.+..+.. .....+. ..|.+.. ...|+.++|.|.+.+.+|. .+.+.|+++|..+.... .
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~ 166 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPK-DINVKWKVDGSEKRDGVLQSVTDQ 166 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CEEEEEEETTEEECTTEEEEECCC
T ss_pred EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCC-ceEEEEEECCcccCCceEeccCce
Confidence 9998754221 1111111 1222222 2347789999999886532 36999999998876411 0
Q ss_pred --ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 157 --LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 157 --~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++.+ .....|.|.....+|+|.|+|.+ .|.
T Consensus 167 ~~~~g~~-~~~s~l~i~~~~~~d~g~YtC~v-~n~ 199 (213)
T 3r06_A 167 DSKDSTY-SLSSTLSLTKADYERHNLYTCEV-THK 199 (213)
T ss_dssp CTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-EET
T ss_pred eCCCCcE-EEEEEEEeCHHHhccCCeEEEEE-Eec
Confidence 00111 22346778888888999999999 666
No 313
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.71 E-value=1.1e-15 Score=122.58 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=105.6
Q ss_pred CCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee-------------ccCcceEEEeeeeCCeEE
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS-------------SVDSGFAATANLTEDNFK 81 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~-------------~~~~~~~~~~~~~~~~~~ 81 (323)
....+..+.+..+.+|++|+|.|.+.+ .+.+.|+|.. ...... ....+..+..+.......
T Consensus 8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 344566777888999999999999543 5799999943 221111 011222233333355667
Q ss_pred EEEeecc--cCcceEEEeeccCCc--------ccee------------------eeeeeCCceeEEecCCcEEEEEEeec
Q psy15235 82 YSIHEAI--LESGYVQSSLFIPRM--------NAIT------------------GNYDIEPKYKVFEYRVPFTLKCNVTS 133 (323)
Q Consensus 82 l~i~~~~--~~G~Y~C~~~~~~~~--------~~~~------------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 133 (323)
|.|.+++ |+|.|+|.+.+.... ..+. +.+...+....+.+|++++|.|.+.+
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 167 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS 167 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence 8888776 499999999875211 1111 11112344456889999999999998
Q ss_pred CCCCCCc-eEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 134 PPPGDDY-QIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 134 ~~~~~~~-~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+ .+ .+.|+|. +..... ......++. .....|.|.+++.+|+|.|.|.+ .+.
T Consensus 168 ~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~ 234 (257)
T 3gkz_A 168 SV---SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQ-WSS 234 (257)
T ss_dssp CC---CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSS
T ss_pred Cc---cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEE-ccC
Confidence 76 45 9999983 322211 011124443 24567999999999999999999 554
No 314
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.71 E-value=3.3e-17 Score=136.00 Aligned_cols=161 Identities=15% Similarity=0.253 Sum_probs=100.7
Q ss_pred CcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196 (323)
Q Consensus 123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 196 (323)
++++|.|.+.+..|. .+.|+|+++|..+...... ++.+ .....|.|.+...+|+|.|+|.| .+..+.
T Consensus 25 ~~v~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~---- 97 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPG-TIQITWLEDGQVMDVDLSTASTTQEGELA-STQSELTLSQKHWLSDRTYTCQV-TYQGHT---- 97 (323)
T ss_dssp SEEEEEEEEEEECCC-CEEEEEEETTEECCGGGEEEEEEEETTEE-EEEEEEEEEHHHHHTTCCEEEEE-EETTEE----
T ss_pred CcEEEEEEEeCeECC-CeEEEEEECCEEcccceecCCcCccCCcE-EEEEEEEEcHHHcCCCCcEEEEE-EeCCCC----
Confidence 699999999886432 4799999999887642110 1111 12245777777778999999999 665221
Q ss_pred eeeeeEE-----Eecceee--eeceeEEeeCCeEEEEEEEecC-CCC---cEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235 197 AQADFDV-----IMKPTAK--LVETLTVIEGEKLRLECLVVGS-PPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN 265 (323)
Q Consensus 197 ~~~~l~v-----~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
....+.+ ...|.+. .+....+.+|+.+.|.|.+.|. |.+ .+.|++++......................
T Consensus 98 ~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~ 177 (323)
T 2wqr_A 98 FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVT 177 (323)
T ss_dssp EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEE
T ss_pred cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEE
Confidence 1222211 1123222 2223346789999999999875 555 899999753332221111111000000135
Q ss_pred eeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 266 SVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 266 ~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
+.|+|.+++.+|.|.|+|.|.|..+
T Consensus 178 ~~L~I~~~~~~D~G~Y~C~a~n~~~ 202 (323)
T 2wqr_A 178 STLPVGTRDWIEGETYQCRVTHPHL 202 (323)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTS
T ss_pred EEEEECHHHccCCCCEEEEEECCCC
Confidence 6899999999999999999999873
No 315
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.71 E-value=1.1e-16 Score=119.84 Aligned_cols=145 Identities=11% Similarity=0.092 Sum_probs=90.0
Q ss_pred eceEEecCCcEEEEEEe-ccCceEEEEEcCccceeeccC-------cceEEEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235 29 GDTEIMEGAPINISCIL-TIFEQVKWQLNGRNINQSSVD-------SGFAATANLTEDNFKYSIHEA--ILESGYVQSSL 98 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~-~~~~~v~W~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~ 98 (323)
.++.+.+|++|+|.|.+ .+.+.+.|++++..+...... .......+...+ .|.|.++ .|+|.|+|.+.
T Consensus 3 ~~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~~~ 80 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEMESP 80 (171)
T ss_dssp EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEECT
T ss_pred cEEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEEEe
Confidence 45788999999999994 456799999987654432110 000111222234 4555554 55999999998
Q ss_pred ccCCccceeeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235 99 FIPRMNAITGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD 177 (323)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 177 (323)
+..+.......+.. .+...+........|.|.+.+.+ .+.+.|++++..+.. .....+.+. ...|
T Consensus 81 n~~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p---~p~i~W~~~~~~l~~---------~~~~~l~~~--~~~~ 146 (171)
T 1ccz_A 81 NITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS---------LRQKTMSYQ--WTNL 146 (171)
T ss_dssp TCCSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEETTEEEEE---------ESSSEEEEE--CSCC
T ss_pred CCCCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCC---CcEEEEEECCEECcC---------CcceEEEEe--ccCC
Confidence 76653222222211 11122222222348999999877 789999999988765 222334433 3678
Q ss_pred CeeEEEEEEcCCC
Q psy15235 178 AGQYSCRLIDPKS 190 (323)
Q Consensus 178 ~G~y~C~~~~~~~ 190 (323)
.|.|+|.| .|..
T Consensus 147 ~g~Y~C~a-~N~~ 158 (171)
T 1ccz_A 147 RAPFKCKA-VNRV 158 (171)
T ss_dssp SSCEEEEE-EETT
T ss_pred CceEEEEE-Eccc
Confidence 89999999 7773
No 316
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.9e-16 Score=120.64 Aligned_cols=170 Identities=12% Similarity=0.161 Sum_probs=115.9
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+ ..+....+..|+.+.|.|.+.+.| .+.|.|+++|..+.... ..++. .....|.|.++..+|+|.|+
T Consensus 19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p---~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (215)
T 3mtr_A 19 APKL-QGPVAVYTWEGNQVNITCEVFAYP---SATISWFRDGQLLPSSN--YSNIKIYNTPSASYLEVTPDSENDFGNYN 92 (215)
T ss_dssp EEEE-ECCSEEEECTTCCEEEEEEEEEES---CCEEEEEETTEESSCSS--SCSEEEEEETTEEEEEECCCSGGGCEEEE
T ss_pred CCcc-cCCceEEEECCCCEEEEEEEeecC---CCEEEEEECCeECCCCC--CccEEEecCCCeeEEEEecCChhhCeEEE
Confidence 4444 355556788999999999999988 68999999999886511 12333 34678999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe----cCCCC--cEEEEECCeeeeccCCeeeee
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV----GSPPP--TVEWRIGNDTYFRSQGRIKLS 256 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~----g~p~~--~~~W~~~~~~~~~~~~~~~~~ 256 (323)
|.+ .|..+. ....+.+.|..+|........ ...+..+.|.|... +.|.. .+.|.+++..... .......
T Consensus 93 C~a-~n~~g~--~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~-~~~~~~~ 167 (215)
T 3mtr_A 93 CTA-VNRIGQ--ESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH-SKWYDAK 167 (215)
T ss_dssp EEE-ECSSCE--EEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE-EEEEEHH
T ss_pred EEE-EECCCc--eEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc-ccccccc
Confidence 999 777443 455666666655533211111 24578899999852 22333 3788887653211 0111111
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
. ......|+|.++...+.|.|+|.|.|..|.
T Consensus 168 ~----~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~ 198 (215)
T 3mtr_A 168 E----ASMEGIVTIVGLKPETTYAVRLAALNGKGL 198 (215)
T ss_dssp H----HHHHTEEEEECCCTTCEEEEEEEEEESSCB
T ss_pred c----ccccccEEECCCCCCCEEEEEEEEEeCCcc
Confidence 0 001378999999999999999999999987
No 317
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.71 E-value=5.1e-17 Score=129.62 Aligned_cols=171 Identities=12% Similarity=0.184 Sum_probs=98.5
Q ss_pred eeceEEecCCcEEEEEEe--ccCc-----eEEEEEcCccceee----ccCcceEEE---------eeeeCCeEEEEEeec
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFE-----QVKWQLNGRNINQS----SVDSGFAAT---------ANLTEDNFKYSIHEA 87 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~-----~v~W~~~g~~~~~~----~~~~~~~~~---------~~~~~~~~~l~i~~~ 87 (323)
+..+.+.+|++|+|.|.+ .+.+ .+.|++++...... ......... .....++..|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 455678999999999996 4444 49999964332210 000000000 011134455777766
Q ss_pred c--cCcceEEEeeccCCccceeeeeee--CCceeE-----EecCCcEEEEEEeec-CCCCCCc-eEEEEECCeecccc--
Q psy15235 88 I--LESGYVQSSLFIPRMNAITGNYDI--EPKYKV-----FEYRVPFTLKCNVTS-PPPGDDY-QIVWYKGNKSITEA-- 154 (323)
Q Consensus 88 ~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~-----~~~g~~v~l~C~~~~-~~~~~~~-~i~W~~~~~~~~~~-- 154 (323)
+ |+|.|+|.+.+..+.......+.+ .|.+.+ ...|+.++|.|.+.+ .| .+ .|.|++++..+...
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P---~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYP---EAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBS---SCCEEEEEEECSSSCSCEE
T ss_pred CHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEEC---CCeEEEEEECCccCCCccc
Confidence 5 499999999876654333333333 333332 345778889999998 55 56 99999998654320
Q ss_pred -----------ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235 155 -----------TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 155 -----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 203 (323)
......+ .....|.+.....+|.|.|+|.+ .|..+.......+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~YtC~a-~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTF-NVTSCLKLNSSQEDPGTVYQCVV-RHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCE-EEEEEEECC--CCCTTCEEEEEE-ECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCE-EEEEEEEEcCccccCCCEEEEEE-ECCCCCCCcEEEEEEEE
Confidence 0001111 23456788888888999999999 78765555666666666
No 318
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.70 E-value=1.2e-15 Score=123.69 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=103.9
Q ss_pred CceEE-EeeceEEecCCcEEEEEEec--cCceEEEEEcCc--cceeecc-------CcceEEEeeeeCCeEEEEEeecc-
Q psy15235 22 DGKIT-YFGDTEIMEGAPINISCILT--IFEQVKWQLNGR--NINQSSV-------DSGFAATANLTEDNFKYSIHEAI- 88 (323)
Q Consensus 22 ~~~i~-~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~--~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~- 88 (323)
+..+. .+..+.+.+|++|+|.|.+. +.+.+.|+|++. .+..... .....+..........|.|.+++
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 33444 46678899999999999954 457899999642 1111000 00111222334566778888776
Q ss_pred -cCcceEEEeeccCCcc-----ceeee-----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235 89 -LESGYVQSSLFIPRMN-----AITGN-----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW 144 (323)
Q Consensus 89 -~~G~Y~C~~~~~~~~~-----~~~~~-----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W 144 (323)
|+|.|+|.+.+..+.. .+.+. +.+ .+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W 170 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTIS-DYWIHW 170 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGG-GSEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCC-CCEEEE
Confidence 4999999998754321 11111 111 2233457789999999999986632 379999
Q ss_pred EECC--eecc------c-------cccccCcEEe------ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 145 YKGN--KSIT------E-------ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 145 ~~~~--~~~~------~-------~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+|++ .... . ......++.. ....|.|.+++.+|+|.|+|.+ .|.
T Consensus 171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~ 235 (276)
T 3auv_A 171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCAR-FVF 235 (276)
T ss_dssp EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-ECS
T ss_pred EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEE-EcC
Confidence 9963 2110 0 0112345541 2348999999999999999999 665
No 319
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.70 E-value=4.6e-17 Score=126.64 Aligned_cols=161 Identities=15% Similarity=0.193 Sum_probs=101.3
Q ss_pred EEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 25 ITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
+..+.++.+.+|++|+|.|.+. +.+.+.|+|++ ..+... ....+ +..........|.|.+++.
T Consensus 3 v~qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D 80 (212)
T 1nfd_E 3 LIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPER--FSGSTSGTTATLTISGAQPED 80 (212)
T ss_dssp EECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTT--EEEEEETTEEEEEETTCCGGG
T ss_pred eECCCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCcccc--EEEEeeCCEEEEEECcCCccc
Confidence 3446778899999999999943 45689999953 333210 01112 2223345667788887754
Q ss_pred CcceEEEeeccCCc-----cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc
Q psy15235 90 ESGYVQSSLFIPRM-----NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA 154 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~-----~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~ 154 (323)
+|.|+|.+.+.... ......+. ..|.+.. +..|+.++|.|.+.+.+|. .+.|.|+++|..+...
T Consensus 81 ~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~~~ 159 (212)
T 1nfd_E 81 EAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPG-SATVTWKANGATINDG 159 (212)
T ss_dssp CSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSS-CCEEEEEETTEEECSS
T ss_pred CEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECC-ccEEEEEECCeEcCCC
Confidence 99999999852111 11111111 1222221 2358999999999987431 3799999999887652
Q ss_pred cccc------CcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 155 TELS------GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 155 ~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.... +.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus 160 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~ 199 (212)
T 1nfd_E 160 VKTTKPSKQGQNY-MTSSYLSLTADQWKSHNRVSCQV-THEG 199 (212)
T ss_dssp CBCCCCBCSSSCE-EEEEBCCEEHHHHHTCSCEEEEE-ECTT
T ss_pred eecCCceecCCCc-eEEEEEEEchhhcCCCCeEEEEE-EeCC
Confidence 1100 011 12356889999999999999999 7764
No 320
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.70 E-value=3.8e-16 Score=119.57 Aligned_cols=146 Identities=9% Similarity=0.147 Sum_probs=91.5
Q ss_pred eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeecc-----------Ccc--eEEEeeeeCCeEEEEEeec--cc
Q psy15235 28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSV-----------DSG--FAATANLTEDNFKYSIHEA--IL 89 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~-----------~~~--~~~~~~~~~~~~~l~i~~~--~~ 89 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+++|..+..... ... ....+. .+ ..|.|.++ .|
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~--~sL~I~~v~~~D 81 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QS--YSLQLSNLKMED 81 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TT--CCEEECSCCGGG
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CC--eEEEECCCCccc
Confidence 4567899999999999954 2368999998765432110 000 011111 23 44555555 55
Q ss_pred CcceEEEeeccCCccceeeeeee--C---Ccee----EEecCC-cEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235 90 ESGYVQSSLFIPRMNAITGNYDI--E---PKYK----VFEYRV-PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG 159 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~~~--~---~~~~----~~~~g~-~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~ 159 (323)
+|.|+|.+.+..+.......+.+ . |.+. ....|. .++|.|.+.+.+| .+.|.|+++|..+..
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p--~p~i~W~~~g~~l~~------ 153 (193)
T 2if7_A 82 TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD--NVSFRWEALGNTLSS------ 153 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT--TCEEEEEETTEEEES------
T ss_pred CceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC--ceEEEEEeCCEEcCC------
Confidence 99999999877654322222322 1 1111 123455 8999999998654 689999999987643
Q ss_pred cEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235 160 RLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS 190 (323)
Q Consensus 160 ~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~ 190 (323)
...|.|.....+ |+|.|+|.| .|..
T Consensus 154 -----~~~l~i~~~~~~~d~G~Y~C~a-~N~~ 179 (193)
T 2if7_A 154 -----QPNLTVSWDPRISSEQDYTCIA-ENAV 179 (193)
T ss_dssp -----SSEEEEEECTTTCSCCEEEEEE-EETT
T ss_pred -----CCeEEEEeccCcCCCCcEEEEE-ECCC
Confidence 234666544444 899999999 7763
No 321
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.70 E-value=3.8e-16 Score=123.00 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=107.1
Q ss_pred CCceeEEecCCcEEEEEEeecC--CCCCCceEEEEECC--ee---cc-cc--------ccccCcEE--e----ceeEEEE
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSP--PPGDDYQIVWYKGN--KS---IT-EA--------TELSGRLT--Q----SKDSITI 170 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~--~~~~~~~i~W~~~~--~~---~~-~~--------~~~~~~~~--~----~~~~l~i 170 (323)
.|....+.+|++++|.|.+.+. + ...+.|||.. .. +. .. ....+|+. . ....|.|
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 7 PEISISRPRDETAQISCKVFIESFR---SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGG---GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred cCCEEEEeCCCcEEEEEEeeccccC---ccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 4556678899999999999774 3 4689999842 21 10 00 01345665 1 3458999
Q ss_pred eeeecCCCeeEEEEEEcCC--CCCCCCceeeeeEEEe---------cceee--eeceeEEeeCCeEEEEEEEecC-CC-C
Q psy15235 171 RKTTVDDAGQYSCRLIDPK--STNTTPLAQADFDVIM---------KPTAK--LVETLTVIEGEKLRLECLVVGS-PP-P 235 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~---------~p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~-~ 235 (323)
.+++.+|+|.|.|.+ .+. ...........|.|.. +|.+. .+....+..|+.++|.|.+.|. |. +
T Consensus 84 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~ 162 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSY-GEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI 162 (230)
T ss_dssp CSCCGGGCSEEEEEE-CCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred CcCChhhCEEEEEEE-ECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence 999999999999999 553 1111112234666752 23222 2222234468899999999875 75 5
Q ss_pred cEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 236 TVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 236 ~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
.+.|++ +|..+...... ............+.|+|..... + |.|+|.|.|..+.
T Consensus 163 ~v~W~~~~g~~l~~~~~~-~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 163 RVYWKEKDGNTILDSQEG-DTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp EEEEECTTSSCBCCCEEC-CCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred EEEEEccCCeEccccccc-eeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 899999 77655321110 0000000011246799988875 4 9999999998854
No 322
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.70 E-value=5.9e-16 Score=120.86 Aligned_cols=159 Identities=13% Similarity=0.200 Sum_probs=96.7
Q ss_pred EEEeeceEEecCCcEEEEEEec---cCceEEEEEcC--cccee---e----------ccCcceEEEeeeeCCeEEEEEee
Q psy15235 25 ITYFGDTEIMEGAPINISCILT---IFEQVKWQLNG--RNINQ---S----------SVDSGFAATANLTEDNFKYSIHE 86 (323)
Q Consensus 25 i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g--~~~~~---~----------~~~~~~~~~~~~~~~~~~l~i~~ 86 (323)
+..+..+.+.+|++|+|.|.+. +.+.+.|+|.. ..... . ....+ +......+...|.|.+
T Consensus 4 v~~~p~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~ 81 (218)
T 3s96_B 4 LTQSSSASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDR--FSGSSSGADRYLSISN 81 (218)
T ss_dssp EECCSEEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTT--EEEEEETTEEEEEESS
T ss_pred EEeCCcEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccc--eEEecCCceEEEEEcc
Confidence 3334467899999999999943 45799999932 21111 0 01111 2222246677788887
Q ss_pred ccc--CcceEEEeeccCC-----c--cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235 87 AIL--ESGYVQSSLFIPR-----M--NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYK 146 (323)
Q Consensus 87 ~~~--~G~Y~C~~~~~~~-----~--~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~ 146 (323)
++. +|.|+|.+.+..+ . ......+. ..|.+.. ...|+.++|.|.+.+.+| .+ .|.|++
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p--~~~~v~W~k 159 (218)
T 3s96_B 82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSP--SGVTVAWKA 159 (218)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS--SCCEEEEEE
T ss_pred CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccC--CCeEEEEEE
Confidence 764 9999999987654 1 11111111 1222222 234789999999998443 44 999999
Q ss_pred CCeeccccccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 147 GNKSITEATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 147 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+|..+...... +..+ .....|.|.....+|+|.|+|.| .|.
T Consensus 160 ~g~~l~~~~~~~~~~~~~~~~-~~~s~l~i~~~~~~d~g~Y~C~a-~n~ 206 (218)
T 3s96_B 160 NGTPITQGVDTSNPTKEGNKF-MASSFLHLTSDQWRSHNSFTCQV-THE 206 (218)
T ss_dssp TTEEC--------------CE-EEEEEEEEEHHHHHTCSCEEEEE-EET
T ss_pred CCEECcCceecCcccccCCcE-EEEEEEEEeHHHccCCCeEEEEE-EeC
Confidence 99888641110 1111 22344778888888999999999 666
No 323
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.69 E-value=1.9e-15 Score=115.56 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=101.5
Q ss_pred CceEEEeec-eEEecCCcEEEEEEe-ccCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEE
Q psy15235 22 DGKITYFGD-TEIMEGAPINISCIL-TIFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQ 95 (323)
Q Consensus 22 ~~~i~~~~~-~~v~~G~~v~L~C~~-~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C 95 (323)
...+..+.. +.|.+|++++|+|.+ .+.+ .|.|.+.+..+.. .. .......|.|.+++ |+|.|.|
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~~~~l~~------~~----~~~~~~~L~I~~v~~~d~G~Y~C 76 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQ----SDTGRSVLTVRNASLSAAGTRVC 76 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC------EE----EESSEEEEEECSCCGGGCEEEEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeecccccCc------EE----ecCCccEEEECccCcccCceEEE
Confidence 344443433 689999999999995 4456 9999996654411 11 12455678888887 6999999
Q ss_pred EeeccCCccceeeeeee--CCceeEEe-----cCCcEEEEEEeecCCCCC--CceEEEEECCeeccccccccCcE-----
Q psy15235 96 SSLFIPRMNAITGNYDI--EPKYKVFE-----YRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITEATELSGRL----- 161 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~~~~-----~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~----- 161 (323)
.+.+..+.......+.+ .|....+. .|+.+ |.|.+.+.+|.. .++|+|+|++.++..........
T Consensus 77 ~a~n~~~~~~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~ 155 (210)
T 1gsm_A 77 VGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE 155 (210)
T ss_dssp EEEETTEEEEEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTT
T ss_pred EEEeCCCceEEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccc
Confidence 99987665544444444 44433332 68888 999999876542 26899999999885421101011
Q ss_pred ---------EeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 162 ---------TQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 162 ---------~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..-+..+.+.....+|.+.|+|+| .+.
T Consensus 156 ~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a-~~~ 191 (210)
T 1gsm_A 156 EPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA-TMR 191 (210)
T ss_dssp CCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEE-EEE
T ss_pred cccCCcceEEEEEEEEeecCCcccCCceEEEEE-Eee
Confidence 022344555566667778999999 554
No 324
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.69 E-value=1.2e-15 Score=117.65 Aligned_cols=151 Identities=10% Similarity=0.147 Sum_probs=94.9
Q ss_pred ceEEecCCcEEEEEEec------cCceEEEEEcCccceeeccC--------cceEEEeeeeCCeEEEEEeecc--cCcce
Q psy15235 30 DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQSSVD--------SGFAATANLTEDNFKYSIHEAI--LESGY 93 (323)
Q Consensus 30 ~~~v~~G~~v~L~C~~~------~~~~v~W~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~--~~G~Y 93 (323)
++.+.+|++|+|.|.+. +.+.+.|++++..+...... .++ ..++ ..+...|.|.+++ |+|.|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r-~~~~-~~~~~~L~I~~v~~~D~G~Y 80 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNR-TIFD-ITNNLSIVILALRPSDEGTY 80 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTT-EEEE-STTTTEEEECSCCGGGCEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccce-eEEc-cCCCcEEEEecccchhCeEE
Confidence 46789999999999963 34689999998776422100 011 1111 1234556666655 59999
Q ss_pred EEEeeccCCccc-----eeeeeee-----CCceeEE--ecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCc
Q psy15235 94 VQSSLFIPRMNA-----ITGNYDI-----EPKYKVF--EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGR 160 (323)
Q Consensus 94 ~C~~~~~~~~~~-----~~~~~~~-----~~~~~~~--~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~ 160 (323)
+|.+.+..+... ....+.+ .|..... ..|+.++|.|.+. +.| .+.|.|+++|..+... ..+
T Consensus 81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P---~p~i~W~k~g~~l~~~---~~~ 154 (201)
T 1dr9_A 81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFP---EPHLSWLENGEELNAI---NTT 154 (201)
T ss_dssp EEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESS---CEEEEEEESSCEECCS---EEE
T ss_pred EEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccC---CCEEEEEECCEECccc---cce
Confidence 999998654321 2222332 1333332 4588999999995 777 7899999999887641 112
Q ss_pred EE-ece-eEE---EEeeeecCCCeeEEEEEEcCC
Q psy15235 161 LT-QSK-DSI---TIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 161 ~~-~~~-~~l---~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+. ... ..+ .+..+..+|.|.|+|.| .|.
T Consensus 155 ~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a-~n~ 187 (201)
T 1dr9_A 155 VSQDPETELYAVSSKLDFNMTTNHSFMCLI-KYG 187 (201)
T ss_dssp EEECTTTCCEEEEEEEEEETTSCEEEEEEE-EET
T ss_pred EEecCCCcEEEEEEEEEEEecCCCEEEEEE-ecC
Confidence 21 111 111 23455678999999999 666
No 325
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.69 E-value=4.1e-16 Score=123.56 Aligned_cols=172 Identities=17% Similarity=0.280 Sum_probs=106.5
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c--------cccccCcEE-----eceeEEEEeeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E--------ATELSGRLT-----QSKDSITIRKTT 174 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~--------~~~~~~~~~-----~~~~~l~i~~~~ 174 (323)
.|....+.+|++++|.|.+.. + .+.+.|||++ .... . ...+..|+. .....|.|.+++
T Consensus 5 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 5 SPRNKVAVTGGKVTLSCQQTN-N---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp ECSEEEEETTCCEEEEEEESS-C---CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred CCCeeEEeCCCcEEEEEEeCC-C---CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 455667889999999999853 4 5799999853 1110 0 001234544 234689999999
Q ss_pred cCCCeeEEEEEEcCCCC---CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CCC-cEEEEE
Q psy15235 175 VDDAGQYSCRLIDPKST---NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PPP-TVEWRI 241 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~ 241 (323)
.+|+|.|.|.+ .+..+ .........|.|.. +|.+... ....+.+|+.++|.|.+.|. |.+ .+.|++
T Consensus 81 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 81 PSQTSVYFCAS-GGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp GGGCEEEEEEE-ESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred cccCEEEEEEE-ecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999 55421 01111233566654 4444422 22234579999999999886 655 899999
Q ss_pred CCeeeeccCCee--eeecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeeccc
Q psy15235 242 GNDTYFRSQGRI--KLSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVAT 290 (323)
Q Consensus 242 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g 290 (323)
+|..+....... .... .++ ....+.|.|.....+| .|.|+|.|.|...
T Consensus 160 ~g~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKE-SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TTEEECTTEEECSSCEEE-ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CCEECCCceecccceEeC-CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 998875321110 0000 000 0123456666555555 5789999999863
No 326
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.69 E-value=8.9e-16 Score=119.99 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=98.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.++.+.+|++++|.|.+.+ .+.+.|+|+ |..+... ....+..+..+...+...|
T Consensus 2 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (219)
T 1c1e_H 2 IQLVQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYL 81 (219)
T ss_dssp CEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEE
T ss_pred ccEeCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEE
Confidence 3566777888999999999999542 578999997 4433210 0111222222222455678
Q ss_pred EEeeccc--CcceEEEeeccCCcc--c--eeeeeee------CCceeE------EecCCcEEEEEEeec-CCCCCCc-eE
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPRMN--A--ITGNYDI------EPKYKV------FEYRVPFTLKCNVTS-PPPGDDY-QI 142 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~~~--~--~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~-~~~~~~~-~i 142 (323)
.|.+++. +|.|+|.+.+..+.. . ....+.+ .|.+.. +..|+.++|.|.+.+ .| .+ .|
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P---~p~~v 158 (219)
T 1c1e_H 82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP---EPVTV 158 (219)
T ss_dssp EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBS---SCCEE
T ss_pred EECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccC---CCeEE
Confidence 8877764 999999998765210 0 0111111 122222 346999999999998 56 56 99
Q ss_pred EEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 143 VWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 143 ~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|++++..+..... ..+.+ .....|.|... ..|.|.|+|.| .|.
T Consensus 159 ~W~~~g~~~~~~~~~~~~~~~~~-~~~s~L~i~~~-~~d~g~Y~C~a-~n~ 206 (219)
T 1c1e_H 159 TWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSS-PRPSETVTCNV-AHP 206 (219)
T ss_dssp EEGGGTBCTTEEECCCEESSSCE-EEEEEEEEESS-STTTSCCEEEE-EEG
T ss_pred EEEeCCcccceEecCCcccCCeE-EEEEEEEEecc-cCCCCEEEEEE-EeC
Confidence 99999876532000 01111 22346788443 44669999999 666
No 327
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.69 E-value=5.4e-15 Score=115.68 Aligned_cols=165 Identities=11% Similarity=0.148 Sum_probs=101.9
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee----------------ccCcceEEEeeeeCCeE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS----------------SVDSGFAATANLTEDNF 80 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~----------------~~~~~~~~~~~~~~~~~ 80 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|.. ...... ....+..+..+...+.+
T Consensus 2 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 81 (221)
T 3m8o_H 2 VQLVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTA 81 (221)
T ss_dssp CEEEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEE
T ss_pred ceEEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEE
Confidence 3466777888999999999999542 4789999843 211100 01122223333335677
Q ss_pred EEEEeeccc--CcceEEEeeccCC-c---cceeeeee--e--CCceeEE-----ecCCcEEEEEEeecCCCCCCceEEEE
Q psy15235 81 KYSIHEAIL--ESGYVQSSLFIPR-M---NAITGNYD--I--EPKYKVF-----EYRVPFTLKCNVTSPPPGDDYQIVWY 145 (323)
Q Consensus 81 ~l~i~~~~~--~G~Y~C~~~~~~~-~---~~~~~~~~--~--~~~~~~~-----~~g~~v~l~C~~~~~~~~~~~~i~W~ 145 (323)
.|.|.+++. +|.|+|.+.+... . ......+. . .|.+... ..|+.++|.|.+.+..|...+.+.|+
T Consensus 82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWS 161 (221)
T ss_dssp EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeECCCCEEEEEE
Confidence 788887754 9999999987531 1 11111111 0 2222211 47899999999998443111599999
Q ss_pred ECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 146 KGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 146 ~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++|..+.... ..++++ .....|.|.....+|.|.|+|.+ .+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v-~~~ 209 (221)
T 3m8o_H 162 ESGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHV-KHY 209 (221)
T ss_dssp CCSTTCEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEE-EET
T ss_pred ECCEECceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEE-EEC
Confidence 9987663200 112333 22346889988888999999999 665
No 328
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.69 E-value=4.2e-16 Score=124.11 Aligned_cols=182 Identities=19% Similarity=0.245 Sum_probs=107.6
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.... ...+.|||. +..... .....+|+. .....|+|.+
T Consensus 6 ~~~v~v~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (248)
T 3u2s_H 6 SGGGVVQPGSSLRLSCAASGFDFS-RQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS 84 (248)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCEEEeCCCCEEEEEEeccccCC-ccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 445668899999999999763211 468999983 211100 112345665 2345799999
Q ss_pred eecCCCeeEEEEEEcCCCC--------------------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEE
Q psy15235 173 TTVDDAGQYSCRLIDPKST--------------------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLEC 227 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~--------------------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C 227 (323)
++.+|+|.|.|.+ .+..+ .........+.|. .+|.+. .++...+..|+.++|.|
T Consensus 85 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C 163 (248)
T 3u2s_H 85 LRVEDTATYFCVR-EAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 163 (248)
T ss_dssp CCGGGCEEEEEEE-EEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred CCHHHCEEEEEEE-eCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence 9999999999999 43200 0011223355554 244444 33344456799999999
Q ss_pred EEec-CC-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 228 LVVG-SP-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 228 ~~~g-~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
.+.+ .| +..+.|++++..+.......... .++ ....+.|+|.....+| |.|+|.|.|..+. ......|.+
T Consensus 164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~l~~ 236 (248)
T 3u2s_H 164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKKVEP 236 (248)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCEEC--TTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT----EEEEEECCC
T ss_pred EEeeEECCCeEEEEeECCccCceeecCceEC--CCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC----cceEEEEcc
Confidence 9977 45 34799999886421110000000 111 1134679999988888 9999999999854 444444443
No 329
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.69 E-value=6.4e-16 Score=121.07 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=100.7
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccce---ee-------------ccCcceEEEeeeeCCeE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNIN---QS-------------SVDSGFAATANLTEDNF 80 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~---~~-------------~~~~~~~~~~~~~~~~~ 80 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|++ ..+. .. ....+..+..+...+..
T Consensus 2 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 81 (222)
T 1q9r_B 2 VKLVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSIL 81 (222)
T ss_dssp CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEE
T ss_pred ceEecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeE
Confidence 3566777889999999999999542 5689999953 2211 00 01112222222224566
Q ss_pred EEEEeeccc--CcceEEEeeccCC-----ccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-
Q psy15235 81 KYSIHEAIL--ESGYVQSSLFIPR-----MNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY- 140 (323)
Q Consensus 81 ~l~i~~~~~--~G~Y~C~~~~~~~-----~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~- 140 (323)
.|.|.+++. +|.|+|.+.+..+ .......+.+ .|.+.. +..|+.++|.|.+.+..| .+
T Consensus 82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~ 159 (222)
T 1q9r_B 82 YLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPV 159 (222)
T ss_dssp EEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBS--SCC
T ss_pred EEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEEC--CCC
Confidence 788877764 9999999987542 1100011111 122222 346999999999998633 56
Q ss_pred eEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 141 QIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 141 ~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.|.|+++|..+..... ..+.+ .....|.|.++..+| |.|+|.| .|..
T Consensus 160 ~v~W~~~g~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~y~C~a-~n~~ 210 (222)
T 1q9r_B 160 TVTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHPA 210 (222)
T ss_dssp EEEEGGGTBCTTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEGG
T ss_pred EEEEecCCeEcceEeccccccCCcE-EEEEEEEECchhcCC-CeEEEEE-EccC
Confidence 9999999876542100 01111 223468888888888 9999999 6763
No 330
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.68 E-value=2.1e-15 Score=116.43 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=112.4
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCC-CceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
+.+.|.-..+..|+.++|.|.+.+..|.. ...++|+|||..+.. ....|.+..+...|+|.|+|.+ .+
T Consensus 5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT~tLti~s~t~sdSG~YqCvV-TD 73 (304)
T 3shs_A 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NTATLTVADATSENAGSYKVTV-QD 73 (304)
T ss_dssp EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEE-EE
T ss_pred EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------CcceEEeeeccccCCeEEEEEE-EE
Confidence 33344555567899999999998765421 358999999988764 4557899999999999999999 56
Q ss_pred CCCCCCCceeeeeEEEecc--eee--eeceeEEeeCCeEEEEEEE--ec-CC-----CCcEEEEECCeeeeccCCeeeee
Q psy15235 189 KSTNTTPLAQADFDVIMKP--TAK--LVETLTVIEGEKLRLECLV--VG-SP-----PPTVEWRIGNDTYFRSQGRIKLS 256 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p--~~~--~~~~~~~~~g~~~~l~C~~--~g-~p-----~~~~~W~~~~~~~~~~~~~~~~~ 256 (323)
..+...... .+.|...+ .+. .|....+..+..+.|.+.+ .| .| ..+++|++++..+..
T Consensus 74 a~Gcs~tSs--~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-------- 143 (304)
T 3shs_A 74 TDTMTSVES--EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------- 143 (304)
T ss_dssp TTTCCEEEC--CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--------
T ss_pred CCCCeeeee--eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--------
Confidence 544432222 33333322 222 3334455667889999988 43 44 458999999987742
Q ss_pred cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
...|++......++|.|+|.+.|..+.+..+++..+.
T Consensus 144 --------Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~ 180 (304)
T 3shs_A 144 --------TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIM 180 (304)
T ss_dssp --------SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEE
T ss_pred --------ccccceeeEEecCCeEEEEEEEcCCCCcccccceEEE
Confidence 3467777888899999999999998753333333333
No 331
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.68 E-value=2e-16 Score=124.63 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=96.1
Q ss_pred EEeeceEEecCCcEEEEEEec--cC-ceEEEEEcCccce-----eec-cCcceEEEee----------e-eCCeEEEEEe
Q psy15235 26 TYFGDTEIMEGAPINISCILT--IF-EQVKWQLNGRNIN-----QSS-VDSGFAATAN----------L-TEDNFKYSIH 85 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~--~~-~~v~W~~~g~~~~-----~~~-~~~~~~~~~~----------~-~~~~~~l~i~ 85 (323)
..+..+.+.+|+++.|.|.+. +. +.+.|++++.... ... .......+.. . ..+. |.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--L~i~ 82 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGR--LVLA 82 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCC--EEES
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCce--EEEc
Confidence 346678899999999999954 32 6899999765422 100 0000011111 1 1233 5565
Q ss_pred ecc--cCcceEEEeeccC-Cccceeeeeee--CC---------ceeEEecCCcE-EEEEEe-ecCCCCCCceEEEEECCe
Q psy15235 86 EAI--LESGYVQSSLFIP-RMNAITGNYDI--EP---------KYKVFEYRVPF-TLKCNV-TSPPPGDDYQIVWYKGNK 149 (323)
Q Consensus 86 ~~~--~~G~Y~C~~~~~~-~~~~~~~~~~~--~~---------~~~~~~~g~~v-~l~C~~-~~~~~~~~~~i~W~~~~~ 149 (323)
+++ |+|.|+|.+.+.. +.......+.+ .| ....+.+|+.+ +|.|.+ .+.| .+.+.|++++.
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p---~p~i~W~~~~~ 159 (231)
T 2pet_A 83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNP---APKITWYRNGQ 159 (231)
T ss_dssp SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBS---CCEEEEEETTE
T ss_pred ccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECccc---CCEEEEEECCc
Confidence 554 5999999998775 43333223322 11 11123467877 999999 7777 78999999999
Q ss_pred eccccccccCcEE-e------------ceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 150 SITEATELSGRLT-Q------------SKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 150 ~~~~~~~~~~~~~-~------------~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+........++. . ....|.|.....+|.|.|+|.| .|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a-~n 210 (231)
T 2pet_A 160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA-HY 210 (231)
T ss_dssp ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEE-EE
T ss_pred cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEE-Ec
Confidence 8876221112322 0 1256788766666799999999 66
No 332
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.7e-15 Score=118.78 Aligned_cols=163 Identities=14% Similarity=0.210 Sum_probs=103.6
Q ss_pred eEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l~ 83 (323)
....+..+.+.+|++|+|.|.+. +.+.+.|+|.. ..+... ....+..+..+.....+.|.
T Consensus 9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 88 (256)
T 3juy_B 9 QLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME 88 (256)
T ss_dssp EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred EEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEE
Confidence 34456778899999999999953 45789999842 221110 01122233323335667788
Q ss_pred Eeecc--cCcceEEEeecc------------CCcc----ceee-------------------eeeeCCceeEEecCCcEE
Q psy15235 84 IHEAI--LESGYVQSSLFI------------PRMN----AITG-------------------NYDIEPKYKVFEYRVPFT 126 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~------------~~~~----~~~~-------------------~~~~~~~~~~~~~g~~v~ 126 (323)
|.+++ |+|.|+|.+.+. .... .+.+ .+...+....+.+|++++
T Consensus 89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~ 168 (256)
T 3juy_B 89 LRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERAT 168 (256)
T ss_dssp ECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEE
T ss_pred ECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEE
Confidence 88776 499999999875 1110 1111 111234445578899999
Q ss_pred EEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 127 LKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 127 l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.|.+.+.++ .+.+.|+|. +..... ......++. .....|.|.+++.+|+|.|.|.+ .+.
T Consensus 169 L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~ 242 (256)
T 3juy_B 169 FSCRSSHSIR--SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQV-YGA 242 (256)
T ss_dssp EEEEESSCCT--TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE-CCS
T ss_pred EEEEECCCcC--CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEE-eeC
Confidence 9999988663 379999983 222110 001133443 34567999999999999999999 664
No 333
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.68 E-value=2.6e-16 Score=121.92 Aligned_cols=163 Identities=9% Similarity=0.126 Sum_probs=94.2
Q ss_pred EEEeeceE-EecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEE
Q psy15235 25 ITYFGDTE-IMEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQ 95 (323)
Q Consensus 25 i~~~~~~~-v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C 95 (323)
+..+.... +.+|++++|.|.+.+ ...+.|+|++..+.....................|.|.+++ |+|.|+|
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 85 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 85 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence 33444444 889999999999532 23899999987654320000000000000112356676654 5999999
Q ss_pred EeeccCCccceeeee----ee--CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-
Q psy15235 96 SSLFIPRMNAITGNY----DI--EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT- 162 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~----~~--~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~- 162 (323)
.+.+..+.......+ .+ .|.+.+. ..|+.++|.|.+.+.+|. ...|.|+++|..+...........
T Consensus 86 ~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~ 164 (207)
T 2vol_A 86 RVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPE-DITVEWESNGQPAENYKNTQPIMDT 164 (207)
T ss_dssp EEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSS-CCEEEEEETTEECSCEEECCCEECT
T ss_pred EEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECC-CCEEEEEECCEeccCcccCCceECC
Confidence 999876543111111 11 3333322 138899999999986531 359999999988754111000001
Q ss_pred ----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 163 ----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 163 ----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.....|.|.....+|.|.|+|.| .|.
T Consensus 165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a-~n~ 194 (207)
T 2vol_A 165 DGSYFVYSKLNVQKSNWEAGNTFTCSV-LHE 194 (207)
T ss_dssp TSCEEEEEEEEEEHHHHSSCCEEEEEE-ECT
T ss_pred CCCEEEEEEEEECHHHcCCCCEEEEEE-ECC
Confidence 11234555555556899999999 676
No 334
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.68 E-value=3.5e-16 Score=118.23 Aligned_cols=144 Identities=12% Similarity=0.223 Sum_probs=89.9
Q ss_pred eceEEecCCcEEEEEEec-c--CceEEEEEc-CccceeeccC-------cc--eEEEeeeeCCeEEEEEeec--ccCcce
Q psy15235 29 GDTEIMEGAPINISCILT-I--FEQVKWQLN-GRNINQSSVD-------SG--FAATANLTEDNFKYSIHEA--ILESGY 93 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~~-~--~~~v~W~~~-g~~~~~~~~~-------~~--~~~~~~~~~~~~~l~i~~~--~~~G~Y 93 (323)
.++.+.+|++|+|.|... + .+.+.|+|+ +..+...... .. ..+.++...+ .|.|.++ .|+|.|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~--sL~I~~v~~~D~G~Y 84 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDY 84 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTC--CEEECSCCGGGCEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCc--cEEEcCCCHHHCeEE
Confidence 457899999999999953 3 579999994 4333221000 00 1112222234 4555554 559999
Q ss_pred EEEeeccCCccceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235 94 VQSSLFIPRMNAITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170 (323)
Q Consensus 94 ~C~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 170 (323)
+|.+.+.. .......+.+ .+...+...+..++|.|.+...+ .+.|.|++++..+.. .....+.+
T Consensus 85 ~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp---~p~i~W~~~~~~l~~---------~~~~~l~~ 151 (180)
T 2dru_A 85 YMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS---------LRQKTMSY 151 (180)
T ss_dssp EEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCT---TCEEEEEETTEEEEE---------ESSSEEEE
T ss_pred EEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCC---CCEEEEEECCeECcC---------CCCCEEEE
Confidence 99987655 3222223333 12233334567899999994445 789999999987753 23345555
Q ss_pred eeeecCCCeeEEEEEEcCCC
Q psy15235 171 RKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~ 190 (323)
.. .+|+|.|+|.| .|..
T Consensus 152 ~~--~~d~g~Y~C~a-~N~~ 168 (180)
T 2dru_A 152 QW--TNLRAPFKCKA-VNRV 168 (180)
T ss_dssp EC--SCCSSCEEEEE-EETT
T ss_pred EE--hhcCccEEEEE-ecCc
Confidence 33 68999999999 6763
No 335
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.68 E-value=3.7e-16 Score=117.97 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=92.6
Q ss_pred eeceEEecCCcEEEEEEec----cCceEEEEE--cCccceeecc------CcceEEEeeeeCCeEEEEEeecccCcceEE
Q psy15235 28 FGDTEIMEGAPINISCILT----IFEQVKWQL--NGRNINQSSV------DSGFAATANLTEDNFKYSIHEAILESGYVQ 95 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~----~~~~v~W~~--~g~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C 95 (323)
...+...+|++|+|.|... +.+.|.|++ ++..+..... ..++.. .. .++.+.|.-....|+|.|+|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~-~~-~ngsL~I~~v~~~DsG~Y~c 83 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LF-KNGTLKIKHLKTDDQDIYKV 83 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE-EC-TTSCEEECSCCGGGCEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE-EC-CCCCEEECCCChhhCEEEEE
Confidence 3456788999999999643 357899999 8876643210 111111 11 24444444444455999999
Q ss_pred EeeccCCccce--eeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235 96 SSLFIPRMNAI--TGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170 (323)
Q Consensus 96 ~~~~~~~~~~~--~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 170 (323)
.+.+..+.... ...+.+ .+.+.+...+..++|.|.+.+.+ .+.|.|+++|..+ . .....+.+
T Consensus 84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p---~~~~~W~~~g~~l-~---------~~~~~i~~ 150 (182)
T 1hnf_A 84 SIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGT---DPELNLYQDGKHL-K---------LSQRVITH 150 (182)
T ss_dssp EEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEESSCEE-E---------EESSCEEE
T ss_pred EEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCC---CCEEEEEECCEEC-C---------CCCcEEEE
Confidence 99887655322 222222 12223333455899999999887 6899999999887 3 12223333
Q ss_pred eeeecCCCeeEEEEEEcCCC
Q psy15235 171 RKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 171 ~~~~~~d~G~y~C~~~~~~~ 190 (323)
.. ..+|+|.|+|.| .|..
T Consensus 151 ~~-~~~d~G~Y~C~a-~N~~ 168 (182)
T 1hnf_A 151 KW-TTSLSAKFKCTA-GNKV 168 (182)
T ss_dssp EC-CSCEEEEEEEEE-ECSS
T ss_pred ec-ccCCCcEEEEEE-EeCC
Confidence 32 468999999999 7773
No 336
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=131.40 Aligned_cols=167 Identities=13% Similarity=0.239 Sum_probs=107.4
Q ss_pred EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
+..|++++|.|.+.+.. |. ...|.|++++..+..... ....+ .....|.|..++.+|+|.|+|.+ .+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~s~L~I~~~~~~D~g~Y~C~~-~~~~ 256 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTQPREEQFNSTF-RSVSELPIMHQDWLNGKEFKCRV-NSAA 256 (376)
T ss_pred eeeCCeeEEEEEEeccccCCC-ccEEEEEECCccccCcccCCCCcccCCcE-EEEEEEEechHhccCCCEEEEEE-ecCC
Confidence 66799999999998872 21 358999999866532100 01111 33457899999999999999999 6663
Q ss_pred CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCC-CCc
Q psy15235 191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTA 264 (323)
Q Consensus 191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~ 264 (323)
........+.+ .+..+|.+.+.. ......|+.++|.|.+.|. | .+.++|++||..+..... .......++ ...
T Consensus 257 ~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~-~~~~~~~dgty~~ 335 (376)
T 2aty_A 257 FPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN-TQPIMNTNESYFV 335 (376)
T ss_pred CCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe-CCceECCCCCEEE
Confidence 32222222222 344466665332 2233458899999999886 3 458999999987642111 111100111 123
Q ss_pred ceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 265 NSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 265 ~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.|.|.....+|.|.|+|.|.|..
T Consensus 336 ~s~L~i~~~~~~~~~~YtC~v~h~~ 360 (376)
T 2aty_A 336 YSKLNVQKSNWEAGNTFTCSVLHEG 360 (376)
T ss_pred EEEEEEcHHHhCCCCcEEEEEEeCC
Confidence 4678888888888999999999987
No 337
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.67 E-value=1.3e-15 Score=118.32 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=99.7
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e----------ccCcceEEEeeeeCCeEEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S----------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~----------~~~~~~~~~~~~~~~~~~l~ 83 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+ |..... . ....+..+..+...+...|.
T Consensus 2 v~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 81 (210)
T 3d9a_H 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLD 81 (210)
T ss_dssp CEEEEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred ceEecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEE
Confidence 3566777889999999999999553 378999995 322210 0 01122222222234556788
Q ss_pred Eeeccc--CcceEEEeeccCCc---cceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEECCe
Q psy15235 84 IHEAIL--ESGYVQSSLFIPRM---NAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNK 149 (323)
Q Consensus 84 i~~~~~--~G~Y~C~~~~~~~~---~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~ 149 (323)
|.+++. +|.|+|.+.+.... ..+.+.... .|.+.. +..|+.++|.|.+.+..| .+ .+.|++++.
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~~~~ 159 (210)
T 3d9a_H 82 LNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPVTVTWNSGSL 159 (210)
T ss_dssp ECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBS--SCCEEEEGGGTB
T ss_pred ECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEec--CCcEEEEeeCCc
Confidence 887765 99999999875311 111111000 122221 347899999999998733 56 999999987
Q ss_pred ecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 150 SITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 150 ~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+..... ..+.+ .....|.|.+...+| |.|+|.| .|.
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~ 200 (210)
T 3d9a_H 160 SSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHP 200 (210)
T ss_dssp CTTEEECCCEEETTEE-EEEEEEEEEGGGTTT-SCCEEEE-EEG
T ss_pred ccceEEcCCccCCCcE-EEEEEEEEcHHHcCC-CcEEEEE-EeC
Confidence 6432000 01111 234568888887766 9999999 666
No 338
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.67 E-value=1.8e-15 Score=121.23 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=100.5
Q ss_pred eeceEEecCCcEEEEEEe--ccCceEEEEEcC--ccceee----------ccCcceEEEeeeeCCeEEEEEeecc--cCc
Q psy15235 28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNG--RNINQS----------SVDSGFAATANLTEDNFKYSIHEAI--LES 91 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g--~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~--~~G 91 (323)
+..+.+.+|++|+|.|.+ .+.+.+.|+|.. ...... ....+.....+.......|.|.+++ |+|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG 89 (256)
T 3tf7_C 10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA 89 (256)
T ss_dssp CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence 456889999999999994 456899999942 221110 0112222222344667788888875 499
Q ss_pred ceEEEeeccCCcc--------ceee------------------------eeeeCCceeEEecCCcEEEEEEeecCCCCCC
Q psy15235 92 GYVQSSLFIPRMN--------AITG------------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDD 139 (323)
Q Consensus 92 ~Y~C~~~~~~~~~--------~~~~------------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~ 139 (323)
.|+|.+.+..+.. .+.+ .+...+....+.+|++++|.|.+.+..
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~---- 165 (256)
T 3tf7_C 90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSH---- 165 (256)
T ss_dssp EEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSCC----
T ss_pred EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCCc----
Confidence 9999998754311 1111 122244555677899999999998754
Q ss_pred ceEEEEECC--eeccc-----------cccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 140 YQIVWYKGN--KSITE-----------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 140 ~~i~W~~~~--~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.+.|+|.. ..... .....+++. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 166 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~ 232 (256)
T 3tf7_C 166 NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCAS-SDA 232 (256)
T ss_dssp SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEE-EEE
T ss_pred eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEe-cCC
Confidence 589999832 11110 000123332 23458999999999999999999 554
No 339
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.67 E-value=1.1e-14 Score=114.13 Aligned_cols=164 Identities=12% Similarity=0.201 Sum_probs=101.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+. ..+... ....+..+..+...+...|
T Consensus 2 ~~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (223)
T 1dee_B 2 VQLVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYL 81 (223)
T ss_dssp CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred ceEEcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEE
Confidence 3566778889999999999999543 3689999953 222110 0112222222223456788
Q ss_pred EEeeccc--CcceEEEeeccCC----c--cceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-e
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPR----M--NAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-Q 141 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~----~--~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~ 141 (323)
.|.+++. +|.|+|.+.+..+ . ......+.+ .|.+.. +..|+.++|.|.+.+..| .+ .
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~ 159 (223)
T 1dee_B 82 QMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLP--DSIT 159 (223)
T ss_dssp EECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBS--SCCE
T ss_pred EECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeC--CCeE
Confidence 8887764 9999999987542 1 000011222 222222 237899999999998744 44 9
Q ss_pred EEEEE-CCeecccccc-----ccCcEEeceeEEEEeeeec--CCCeeEEEEEEcCCC
Q psy15235 142 IVWYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKS 190 (323)
Q Consensus 142 i~W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~ 190 (323)
+.|++ +|..+..... .++.+ .....|.|..... +|.|.|+|.+ .|..
T Consensus 160 v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v-~n~~ 214 (223)
T 1dee_B 160 FSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKV-QHPN 214 (223)
T ss_dssp EEEEETTSCBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEE-ECTT
T ss_pred EEeEccCCCccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEE-EeCC
Confidence 99999 8877643000 01222 2245677776665 7789999999 7763
No 340
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.67 E-value=2.5e-16 Score=123.34 Aligned_cols=172 Identities=15% Similarity=0.223 Sum_probs=102.4
Q ss_pred EeeceEEecCCcEEEEEEec---cCc----eEEEEEcCccceeec--c--------CcceEEEee---eeCCeEEEEEee
Q psy15235 27 YFGDTEIMEGAPINISCILT---IFE----QVKWQLNGRNINQSS--V--------DSGFAATAN---LTEDNFKYSIHE 86 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~---~~~----~v~W~~~g~~~~~~~--~--------~~~~~~~~~---~~~~~~~l~i~~ 86 (323)
.+..+.+.+|++|+|.|.+. +.+ .+.|+|++....... . ..+..+..+ ...++..|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 45667889999999999963 333 499999865321110 0 111111110 012455677777
Q ss_pred ccc--CcceEEEeeccC-Cccceeeeeee--CCceeE-----EecCCcE-EEEEEee-cCCCCCCceEEEEECCeecccc
Q psy15235 87 AIL--ESGYVQSSLFIP-RMNAITGNYDI--EPKYKV-----FEYRVPF-TLKCNVT-SPPPGDDYQIVWYKGNKSITEA 154 (323)
Q Consensus 87 ~~~--~G~Y~C~~~~~~-~~~~~~~~~~~--~~~~~~-----~~~g~~v-~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~ 154 (323)
++. +|.|+|.+.+.. +.......+.+ .|.... ...|+.+ .|.|.+. +.| .+.|.|++++......
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~~~g~~~~~l~C~~~~g~P---~p~v~W~k~~~~~~~~ 161 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRP---PAQITWHSDLGGMPQT 161 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCCCCSSSCCEEEEEEESCSS---CCCEEEECSSSCCCCC
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcccCCceEEEEEEECCCccC---CCeeEEEeCCCCCCcc
Confidence 654 999999998755 33322222222 222221 1357788 4999988 555 6799999875433220
Q ss_pred cc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 155 TE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 155 ~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
.. ..+.+ .....|.|.++..+|.|.|+|.| .|.. ......+.|...|
T Consensus 162 ~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~a-~n~~----~~~~~~~~v~~~~ 212 (221)
T 3eow_R 162 SQVPGFLSGTV-TVTSLWILVPSSQVDGKQVTCKV-EHES----FEKPQLLTVSLTV 212 (221)
T ss_dssp EEECCCCBTTB-CCEEEEECCCCSCCCCCCEEEEE-CCSC----SSSCEEEEECCCC
T ss_pred ceeecCCCCcE-EEEEEEEEeCCHHHCCCeEEEEE-ECCC----CCCCeEEEEEEEE
Confidence 00 01111 33467999999999999999999 7773 3345555555544
No 341
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.66 E-value=6.3e-15 Score=117.73 Aligned_cols=174 Identities=15% Similarity=0.267 Sum_probs=108.7
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc--------cccccCcEEe-----ceeEEEEeeee
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE--------ATELSGRLTQ-----SKDSITIRKTT 174 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~--------~~~~~~~~~~-----~~~~l~i~~~~ 174 (323)
.|....+.+|++++|.|.+.. + .+.+.||++. .. +.. ......|+.. ....|.|.+++
T Consensus 9 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 84 (252)
T 1oga_E 9 SPKYLFRKEGQNVTLSCEQNL-N---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 84 (252)
T ss_dssp SCSEEEEETTCCEEECCEECS-C---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred cCCeEEEcCCCcEEEEEEeCC-C---CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence 566677889999999999853 3 5799999853 11 100 0012355541 24689999999
Q ss_pred cCCCeeEEEEEEcCCCC-CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CCC-cEEEEECC
Q psy15235 175 VDDAGQYSCRLIDPKST-NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGN 243 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~ 243 (323)
.+|+|.|.|.+ .+... .........|.|.. +|.+.+. ....+.+|+.++|.|.+.|. |.+ .+.|+++|
T Consensus 85 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 85 KNPTAFYLCAS-SSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp SCCCEEEEEEE-ESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hhhCEEEEEEE-ecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 99999999999 55310 01111223456543 4544432 11223468999999999875 654 89999999
Q ss_pred eeeeccCCee--e---eecCCCC-CCcceeEEEeecCcC-CCeEEEEEEeecccC
Q psy15235 244 DTYFRSQGRI--K---LSEHPEK-GTANSVLQIDEATMA-DRGNYYCHGNNVATR 291 (323)
Q Consensus 244 ~~~~~~~~~~--~---~~~~~~~-~~~~~~L~i~~v~~~-d~G~y~C~a~n~~g~ 291 (323)
..+....... . +....++ ....+.|.|...... |.|.|+|.|.|....
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 8875321110 0 0000111 123456888877665 577899999998754
No 342
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=125.76 Aligned_cols=166 Identities=14% Similarity=0.182 Sum_probs=98.7
Q ss_pred CceEE-EeeceEEecCCcEEEEEEec--cCceEEEEEcC--cccee----ec---------cCcceEEEeeeeCCeEEEE
Q psy15235 22 DGKIT-YFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQ----SS---------VDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 22 ~~~i~-~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~----~~---------~~~~~~~~~~~~~~~~~l~ 83 (323)
...+. .+.++.+.+|++|+|.|.+. +.+.+.|+|++ ..... .. ...++........+...|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 34444 45678899999999999963 45789999964 22110 00 0011211111125567788
Q ss_pred Eeeccc--CcceEEEeeccCC---------c-cceeeeee----eCCceeEE-------ecCCcEEEEEEeecCCCCCCc
Q psy15235 84 IHEAIL--ESGYVQSSLFIPR---------M-NAITGNYD----IEPKYKVF-------EYRVPFTLKCNVTSPPPGDDY 140 (323)
Q Consensus 84 i~~~~~--~G~Y~C~~~~~~~---------~-~~~~~~~~----~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~ 140 (323)
|.+++. +|.|+|.+.+..+ . ..+.+... ..|.+.+. ..|+.++|.|.+.+.+|. .+
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~ 182 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HV 182 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSS-CE
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCC-Cc
Confidence 887764 9999999987311 1 11111110 12333332 258999999999987542 37
Q ss_pred eEEEEECCeeccccccc------------cCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235 141 QIVWYKGNKSITEATEL------------SGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS 190 (323)
Q Consensus 141 ~i~W~~~~~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~ 190 (323)
.|.|+++|..+...... +..+ .....|.|.+.... +.|.|+|.+ .|..
T Consensus 183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~~~~YtC~v-~n~~ 243 (279)
T 2wbj_D 183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG 243 (279)
T ss_dssp EEEEEETTEECCTTEEECSSCEESSTTSTTCCE-EEEEEEECCSTTTTCTTCEEEEEE-EECC
T ss_pred EEEEEECCEECCCCcccccccccccccCCCCcE-EEEEEEEEChHHhccCCCEEEEEE-EeCC
Confidence 99999999887542111 1111 22335667666554 467899999 6663
No 343
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.66 E-value=3.4e-15 Score=119.15 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=101.3
Q ss_pred eeceEEecCCcEEEEEEec--cCceEEEEEcCc--cceee---------ccCcceEEEeeeeCCeEEEEEeeccc--Ccc
Q psy15235 28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGR--NINQS---------SVDSGFAATANLTEDNFKYSIHEAIL--ESG 92 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~--~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~ 92 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+|+.. ..... ....+ +..........|.|.+++. +|.
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G~ 88 (250)
T 3esu_F 11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSR--FSGSGSGTDYSLTISNLEQEDIGT 88 (250)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCC--EEEeCCCCEEEEEEccCChhhCEE
Confidence 4567799999999999954 567999999532 11110 01111 2334456677888888764 999
Q ss_pred eEEEeeccCCcc-----ceeee-----------------------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235 93 YVQSSLFIPRMN-----AITGN-----------------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW 144 (323)
Q Consensus 93 Y~C~~~~~~~~~-----~~~~~-----------------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W 144 (323)
|+|.+.+..+.. .+.+. ....+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus 89 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W 167 (250)
T 3esu_F 89 YFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFS-SSWMNW 167 (250)
T ss_dssp EEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGG-GSEEEE
T ss_pred EEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCccc-CCEEEE
Confidence 999998754321 11111 1113334457889999999999875422 469999
Q ss_pred EEC--Ceeccc-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 145 YKG--NKSITE-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 145 ~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
+|+ +..+.. ......|+. .....|.|.+++.+|+|.|.|.+ .+
T Consensus 168 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~ 231 (250)
T 3esu_F 168 VKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCAR-SG 231 (250)
T ss_dssp EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-EC
T ss_pred EEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEE-ec
Confidence 997 433211 011234444 22347999999999999999999 54
No 344
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.66 E-value=2.7e-15 Score=118.13 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=111.9
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---cc-c---------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---IT-E---------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~-~---------~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.... ...+.|||.. .. +. . .....+|+. .....|.|.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFT-HYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS 85 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCEEEcCCCCEEEEEEeecceec-CcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 344668899999999999763211 4689999732 11 10 0 112245555 2345699999
Q ss_pred eecCCCeeEEEEEEcCCCC------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecC-C-CCcEEE
Q psy15235 173 TTVDDAGQYSCRLIDPKST------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGS-P-PPTVEW 239 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W 239 (323)
++.+|+|.|.|.+ .+... .........|.|. .+|.+. ..+...+..|+.+.|.|.+.+. | ++.+.|
T Consensus 86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W 164 (230)
T 3n9g_H 86 LRSEDTAVYYCAR-DWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 164 (230)
T ss_dssp CCGGGCEEEEEEE-ECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred CChhhCEEEEEEE-ccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE
Confidence 9999999999999 54320 0011223345554 244444 2333445689999999999774 4 346999
Q ss_pred EECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 240 RIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
++..+.............++ ....+.|+|.....+| |.|+|.|.|..+. ......|.|.+
T Consensus 165 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~~~v~~ 225 (230)
T 3n9g_H 165 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEPKS 225 (230)
T ss_dssp --GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT----EEEEEECCCCT
T ss_pred --CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC----cceEEEccCCC
Confidence 55544211000000000111 1134689999999999 9999999999855 55566665554
No 345
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.66 E-value=8.2e-15 Score=116.14 Aligned_cols=160 Identities=12% Similarity=0.139 Sum_probs=100.9
Q ss_pred EeeceEEecCCcEEEEEEec--c----CceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 27 YFGDTEIMEGAPINISCILT--I----FEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~----~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
.+.++.+.+|++|+|.|.+. + .+.+.|+|++ ..+.... ......+..........|.|.+++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 86 (240)
T 1moe_A 7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD 86 (240)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhh
Confidence 45668899999999999954 3 5689999963 3221110 0001112223345667788887754
Q ss_pred CcceEEEeeccCCcc-----ceeee----------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc
Q psy15235 90 ESGYVQSSLFIPRMN-----AITGN----------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT 152 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~ 152 (323)
+|.|+|.+.+..+.. .+.+. ....+....+.+|++++|.|.+.+.++. .+.+.|+++ +....
T Consensus 87 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~ 165 (240)
T 1moe_A 87 VATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIK-DTYMHWVKQRPEQGLE 165 (240)
T ss_dssp CEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCE
T ss_pred CEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCC-CCEEEEEEECCCCCcE
Confidence 999999998764321 11111 1112334457789999999999987621 258999995 32221
Q ss_pred c-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 153 E-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 153 ~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
. ......++. .....|.|.+++.+|+|.|+|.+ ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~ 219 (240)
T 1moe_A 166 WIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAP-FG 219 (240)
T ss_dssp EEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-CS
T ss_pred EEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEE-Ee
Confidence 0 001234444 12367999999999999999999 53
No 346
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.65 E-value=1.3e-14 Score=114.39 Aligned_cols=164 Identities=10% Similarity=0.183 Sum_probs=97.8
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e----------ccCcceEEEeeeeCCeEEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S----------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~----------~~~~~~~~~~~~~~~~~~l~ 83 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|.. ..+.. . ....+..+..+...+.+.|.
T Consensus 2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 81 (232)
T 1dn0_B 2 VQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLK 81 (232)
T ss_dssp CEEEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred CeEECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEE
Confidence 3566778889999999999999542 4689999953 22211 0 01122222222234567788
Q ss_pred Eeeccc--CcceEEEeeccCC--c----cceeeeeee------CCceeE------EecC-CcEEEEEEeecCCCCCCc-e
Q psy15235 84 IHEAIL--ESGYVQSSLFIPR--M----NAITGNYDI------EPKYKV------FEYR-VPFTLKCNVTSPPPGDDY-Q 141 (323)
Q Consensus 84 i~~~~~--~G~Y~C~~~~~~~--~----~~~~~~~~~------~~~~~~------~~~g-~~v~l~C~~~~~~~~~~~-~ 141 (323)
|.+++. +|.|+|.+....+ . ......+.+ .|.+.. +..| +.++|.|.+.+..| .+ .
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P--~p~~ 159 (232)
T 1dn0_B 82 LSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLP--DSIT 159 (232)
T ss_dssp ECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBS--SCCE
T ss_pred ECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeC--CCeE
Confidence 887764 9999999973111 1 000112222 122222 2257 99999999998643 44 9
Q ss_pred EEEEE-CCeecccccc-----ccCcEEeceeEEEEeeeec--CCCeeEEEEEEcCCC
Q psy15235 142 IVWYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKS 190 (323)
Q Consensus 142 i~W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~ 190 (323)
+.|++ +|..+..... ..+.+ .....|.|..... +|.|.|+|.+ .|..
T Consensus 160 v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~ytC~v-~n~~ 214 (232)
T 1dn0_B 160 FSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVMAGTDEHVVCKV-QHPN 214 (232)
T ss_dssp EEEEETTSCEECCEEECCCEEETTEE-EEEEEEEECTTCC---CCCEEEEEE-ECTT
T ss_pred EEEEcCCCCceeeEEECCccccCCcE-EEEEEEEEcHHHhcccCCCeEEEEE-EeCC
Confidence 99999 8877643000 01222 2245688887776 7899999999 7763
No 347
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.65 E-value=5.8e-15 Score=115.44 Aligned_cols=163 Identities=14% Similarity=0.167 Sum_probs=100.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cc---ceeec-------------cCcceEEEeeeeCCeE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RN---INQSS-------------VDSGFAATANLTEDNF 80 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~---~~~~~-------------~~~~~~~~~~~~~~~~ 80 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|++ .. +.... ...+..+..+...+..
T Consensus 2 ~~v~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 81 (220)
T 1pz5_B 2 VKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSV 81 (220)
T ss_dssp CEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEE
T ss_pred ceEeccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeE
Confidence 3466778889999999999999542 5789999953 22 11100 0122222222234566
Q ss_pred EEEEeeccc--CcceEEEeeccCCc-----cceeeeeee----CCceeE------EecCCcEEEEEEeecCCCCCCc-eE
Q psy15235 81 KYSIHEAIL--ESGYVQSSLFIPRM-----NAITGNYDI----EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QI 142 (323)
Q Consensus 81 ~l~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~~~----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i 142 (323)
.|.|.+++. +|.|+|.+.+..+. ......+.. .|.+.. +.+|+.++|.|.+.+..| .+ .|
T Consensus 82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v 159 (220)
T 1pz5_B 82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFP--EPVTV 159 (220)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBS--SCCEE
T ss_pred EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeC--CCeEE
Confidence 788877764 99999999876421 111111110 122221 346999999999998733 56 99
Q ss_pred EEEECCeecc----ccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235 143 VWYKGNKSIT----EATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190 (323)
Q Consensus 143 ~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 190 (323)
.|++++.... ......+.+ .....|.|.+...+| |.|+|.| .|..
T Consensus 160 ~W~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~~ 208 (220)
T 1pz5_B 160 KWNYGALSSGVRTVSSVLQSGFY-SLSSLVTVPSSTWPS-QTVICNV-AHPA 208 (220)
T ss_dssp EEGGGTCCTTEEECCCEEETTEE-EEEEEEEECGGGTTT-SCCEEEE-EEGG
T ss_pred EEecCCcccceEEcCCcccCCeE-EEEEEEEEcchhcCC-ceEEEEE-EECC
Confidence 9999886421 100001222 235678888887766 9999999 6763
No 348
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=123.63 Aligned_cols=157 Identities=14% Similarity=0.182 Sum_probs=101.4
Q ss_pred eEEecCCcEEEEEEec-cCceEEEEEcC--ccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc--
Q psy15235 31 TEIMEGAPINISCILT-IFEQVKWQLNG--RNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA-- 105 (323)
Q Consensus 31 ~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~-- 105 (323)
+.+.+|+.+.|.|.+. |.+.++|++++ ..+... .+...+ + ....|+|.|+|.+.+..+...
T Consensus 105 ~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~---------~~~~~~---~--~~~~d~G~Y~C~a~n~~~~~~s~ 170 (289)
T 3mjg_X 105 IFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVP---------YDHQRG---F--SGIFEDRSYICKTTIGDREVDSD 170 (289)
T ss_dssp EEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCC---------EETTTE---E--EECCCSSEEEEEEEETTEEEECC
T ss_pred EEeecCCeEEEEeEcCCCCceEEEEeCCCCCcccee---------ecCCcC---e--eeeccCcEEEEEEEeCCceeeee
Confidence 5688999999999954 56789999865 333211 011111 1 124579999999986543321
Q ss_pred -e--------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEe
Q psy15235 106 -I--------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIR 171 (323)
Q Consensus 106 -~--------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~ 171 (323)
. .+.+...+....+.+|+.++|.|.+.+.| .+.+.|++++............. ......|.|.
T Consensus 171 ~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 247 (289)
T 3mjg_X 171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNE---VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP 247 (289)
T ss_dssp CEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCS---SBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEES
T ss_pred eEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCC---CcceEEEcCCccCCCcccccccccCCcceEEEEEEEEc
Confidence 1 11112222234477899999999999977 78999998765433200001111 1345789999
Q ss_pred eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
++..+|+|.|+|.| .|..+ ....+..|+|...+
T Consensus 248 ~v~~~D~G~Y~C~a-~N~~G--~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 248 SAELEDSGTYTCNV-TESVN--DHQDEKAINITVVE 280 (289)
T ss_dssp SCCSSCCEEEEEEE-EETTT--TEEEEEEEEEEEEC
T ss_pred ccChhhCcEEEEEe-ecCCC--CceeEEEEEEEEEe
Confidence 99999999999999 77744 45566666666554
No 349
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=103.53 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=74.4
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....++... ...+|.|.+++.+|+|.|+|.
T Consensus 8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-------EQGTLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC-------TTCCEEEESCCTTTCCEEEEE
T ss_pred CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc-------CCCEEEEccCCcccCEEEEEE
Confidence 44444 3445678899999999999999999999999998887555555554 356899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEccee
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
|.|..|. ....+.|.|.+++
T Consensus 81 a~n~~g~----~~~~~~l~V~~~~ 100 (100)
T 2edj_A 81 ATSSSGE----TSWSAVLDVTESG 100 (100)
T ss_dssp EECSSCC----CBCCEEEEEESCC
T ss_pred EEcCCCC----EEEEEEEEEecCC
Confidence 9999966 6777888887653
No 350
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.64 E-value=1.9e-15 Score=118.80 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=95.5
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---ec-----------cCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---SS-----------VDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~~-----------~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|++ ..+.. .. ...+..+..+...+...|
T Consensus 2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (227)
T 1mju_H 2 VQLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYM 81 (227)
T ss_dssp CEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred ceEcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEE
Confidence 3456677788999999999999542 4689999964 22211 00 112222222222456778
Q ss_pred EEeeccc--CcceEEEeeccCCc---c--ceeeeee--eCCcee------EEecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPRM---N--AITGNYD--IEPKYK------VFEYRVPFTLKCNVTSPPPGDDY-QIVWYK 146 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~~---~--~~~~~~~--~~~~~~------~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~ 146 (323)
.|.+++. +|.|+|.+.+.... . .+.+... ..|.+. .+..|+.++|.|.+.+..| .+ .|.|++
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~ 159 (227)
T 1mju_H 82 QLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFP--EPVTLTWNS 159 (227)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBS--SCCEEEEGG
T ss_pred EECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeC--CCeEEEEec
Confidence 8887765 99999999864311 1 1111100 011111 2346899999999998643 44 999999
Q ss_pred CCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 147 GNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 147 ~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++..+..... ..+.+ .....|.|.....+| |.|+|.| .|.
T Consensus 160 ~g~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~ 203 (227)
T 1mju_H 160 GSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHP 203 (227)
T ss_dssp GTBCTTEEECCCEEETTEE-EEEEEEEECTTTTTT-SCCEEEE-EEG
T ss_pred CCCcCCcEECCceecCCeE-EEEEEEEEchhhcCC-CeEEEEE-EEC
Confidence 9876432000 01112 234578888887777 9999999 665
No 351
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.64 E-value=1.5e-14 Score=115.12 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=98.1
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEcC--cc--------------ceeeccCcceEEEeeeeCCeEEEEEeecc
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNG--RN--------------INQSSVDSGFAATANLTEDNFKYSIHEAI 88 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g--~~--------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 88 (323)
.+..+.+.+|++|+|.|.+ .+.+.+.|+|.. .. ........+..+ .....+...|.|.+++
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~L~I~~v~ 85 (246)
T 4dzb_B 7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLI-NHASLTLSTLTVTSAH 85 (246)
T ss_dssp ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEE-EEEETTEEEEEECSCC
T ss_pred CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEE-EecCCCEEEEEECCCC
Confidence 4566889999999999984 356789999921 11 111101122222 2223567788888776
Q ss_pred c--CcceEEEeeccCCc------c--ceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEEC
Q psy15235 89 L--ESGYVQSSLFIPRM------N--AITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKG 147 (323)
Q Consensus 89 ~--~G~Y~C~~~~~~~~------~--~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~ 147 (323)
. +|.|+|.+.+.... . .+.+... ..|.+.+ +..|+.++|.|.+.+.+|. ...+.|+++
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~ 164 (246)
T 4dzb_B 86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVN 164 (246)
T ss_dssp GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEET
T ss_pred HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCC-ceEEEEEEC
Confidence 4 99999999764321 1 1111100 1222222 2348999999999986642 249999999
Q ss_pred Ceeccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 148 NKSITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 148 ~~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
|..+...... ++.+ .....|.|.....+| .|.|+|.| .|..
T Consensus 165 g~~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~~g~YtC~v-~~~~ 218 (246)
T 4dzb_B 165 GKEVHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG 218 (246)
T ss_dssp TEEECTTEEECSSCEESSTTSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EECC
T ss_pred CEECCCCcccccccccccccCCCCCE-EEEEEEEECHHHhccCCCeEEEEE-EecC
Confidence 9887651111 1112 122457888887778 99999999 6653
No 352
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.64 E-value=4.8e-15 Score=118.72 Aligned_cols=166 Identities=15% Similarity=0.220 Sum_probs=97.1
Q ss_pred hccCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeC
Q psy15235 18 SISADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTE 77 (323)
Q Consensus 18 ~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~ 77 (323)
.......+..+..+.+.+|++|+|.|...+ ...+.|+|.. +..... ....+..+..+...
T Consensus 20 ~~~~~~~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 99 (256)
T 3sob_H 20 NAYAEVQLVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSK 99 (256)
T ss_dssp ----CCEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGG
T ss_pred ccccceEEEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCC
Confidence 344566777777788999999999999542 4689999842 211110 01223333333346
Q ss_pred CeEEEEEeeccc--CcceEEEeeccCC---------c----cceeeeee--e--CCcee------EEecCCcEEEEEEee
Q psy15235 78 DNFKYSIHEAIL--ESGYVQSSLFIPR---------M----NAITGNYD--I--EPKYK------VFEYRVPFTLKCNVT 132 (323)
Q Consensus 78 ~~~~l~i~~~~~--~G~Y~C~~~~~~~---------~----~~~~~~~~--~--~~~~~------~~~~g~~v~l~C~~~ 132 (323)
+.+.|.|.+++. +|.|+|.+.+..+ . ......+. . .|.+. .+..|+.++|.|.+.
T Consensus 100 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~ 179 (256)
T 3sob_H 100 NTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 179 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEE
Confidence 777888888764 9999999975421 0 11111111 1 12222 234789999999998
Q ss_pred cCCCCCCceEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 133 SPPPGDDYQIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 133 ~~~~~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+..|. ...+.| ++..+..... .++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus 180 ~~~p~-~~~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-~~ytC~v-~~~ 237 (256)
T 3sob_H 180 DYFPE-PVTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 237 (256)
T ss_dssp EEBSS-CCEEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred EEECC-CeEEEE--CCcccCCCeEeCCceeCCCCCE-EEEEEEEECHHHcCC-ceEEEEE-EeC
Confidence 85543 468999 5544322100 11222 223568888888888 9999999 665
No 353
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.6e-15 Score=118.81 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=100.6
Q ss_pred EEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235 26 TYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAI--LE 90 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~--~~ 90 (323)
..+..+.+.+|++|+|.|.+. +.+.+.|+|++ ........ .....+..........|.|.+++ |+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 345567899999999999954 45789999953 22221000 00111223344566788888775 49
Q ss_pred cceEEEeeccCCcc-------ceeeee-----------------------ee-CCceeEEecCCcEEEEEEeecCCCCCC
Q psy15235 91 SGYVQSSLFIPRMN-------AITGNY-----------------------DI-EPKYKVFEYRVPFTLKCNVTSPPPGDD 139 (323)
Q Consensus 91 G~Y~C~~~~~~~~~-------~~~~~~-----------------------~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~ 139 (323)
|.|+|.+.+..+.. .+.+.. .+ .+....+.+|++++|.|.+.+.++. .
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~ 165 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFS-S 165 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGG-G
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccc-c
Confidence 99999998743211 111100 11 1122347789999999999886532 4
Q ss_pred ceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 140 YQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 140 ~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.+.|+|+ +..+.. .....+|+. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~ 235 (256)
T 3ux9_B 166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR-YID 235 (256)
T ss_dssp SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-EET
T ss_pred cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEE-EcC
Confidence 69999986 322210 011233544 23456999999999999999999 554
No 354
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.64 E-value=2.4e-14 Score=111.95 Aligned_cols=163 Identities=15% Similarity=0.254 Sum_probs=101.4
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccce---ee-----------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNIN---QS-----------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~---~~-----------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.++.+.+|++|+|.|.+.+ .+.+.|+|.. ..+. .. ....+..+..+...+...|
T Consensus 2 ~~~~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (220)
T 2fbj_H 2 VKLLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYL 81 (220)
T ss_dssp CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEE
T ss_pred ceEecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEE
Confidence 3566777889999999999999542 4689999953 2211 10 0112222222223456778
Q ss_pred EEeeccc--CcceEEEeeccCCcc---ceeeeeee------CCceeE-----EecCCcEEEEEEeecCCCCCC--ceEEE
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPRMN---AITGNYDI------EPKYKV-----FEYRVPFTLKCNVTSPPPGDD--YQIVW 144 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~~~---~~~~~~~~------~~~~~~-----~~~g~~v~l~C~~~~~~~~~~--~~i~W 144 (323)
.|.+++. +|.|+|.+.+..... .....+.+ .|.+.. +..|+.++|.|.+.+..| . +.|.|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P--~~~~~v~W 159 (220)
T 2fbj_H 82 QMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFP--SGTMNVTW 159 (220)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBS--CCCEEEEE
T ss_pred EECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEEC--CCcEEEEE
Confidence 8887764 999999998754321 00011112 122222 246899999999998744 4 79999
Q ss_pred EECCeeccccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 145 YKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 145 ~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++++..+.... ..++.+ .....|.|.+...+|.|.|+|.+ .|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~ytC~v-~n~ 207 (220)
T 2fbj_H 160 GKSGKDITTVNFPPALASGGRY-TMSNQLTLPAVECPEGESVKCSV-QHD 207 (220)
T ss_dssp SCCCSSCEEEECCCEECSSSCE-EEEEEEEECGGGSCTTCEEEEEE-EET
T ss_pred ecCCEecceEecCceECCCCCE-EEEEEEEECHHHcCCCCeEEEEE-EcC
Confidence 99987652100 011222 22346888888888999999999 666
No 355
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.64 E-value=6.8e-16 Score=106.41 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=66.0
Q ss_pred eeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235 199 ADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277 (323)
Q Consensus 199 ~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 277 (323)
+.+.+..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......... ....|.|.++..+|
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D 75 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKED 75 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET-------TTTEEEECSCCGGG
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC-------CCcEEEEeecCccc
Confidence 345555666665 4556778899999999999999999999999998876443322222 35789999999999
Q ss_pred CeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 278 RGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
+|.|+|.|.|..|. ....+.|.|.+++..
T Consensus 76 ~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~~ 104 (108)
T 3kvq_A 76 EGLYTCQACSVLGC----AKVEAFFIIEGAQEK 104 (108)
T ss_dssp CEEEEEEEC----C----EEEEEEEEEEC----
T ss_pred CEEEEEEEEeCCCc----eEEEEEEEEeCCCcc
Confidence 99999999999965 888889999887654
No 356
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.64 E-value=1.3e-14 Score=115.12 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=100.8
Q ss_pred EEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235 26 TYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFKYSIHEAI--LE 90 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~--~~ 90 (323)
..+..+.+.+|++|+|.|.+. +.+.+.|+|+. ..+.... ...+ +..........|.|.+++ |+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~ 83 (242)
T 2znx_A 6 QSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSR--FSGSGSGTDFTLSINSVETEDF 83 (242)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEEEESSCCGGGC
T ss_pred EcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCC--EEEecCCCEEEEEECCCChHHC
Confidence 345678899999999999954 45799999953 2221100 1111 222234566778888776 49
Q ss_pred cceEEEeeccCCcc-----ceeee----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-
Q psy15235 91 SGYVQSSLFIPRMN-----AITGN----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG- 147 (323)
Q Consensus 91 G~Y~C~~~~~~~~~-----~~~~~----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~- 147 (323)
|.|+|.+.+..+.. .+.+. +.+ .+....+.+|++++|.|.+.+.+.. .+.+.|+|+
T Consensus 84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~ 162 (242)
T 2znx_A 84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSIT-SDYXSXIRKF 162 (242)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGG-GSCEEEEEEC
T ss_pred EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccC-CcceeeEeeC
Confidence 99999998764321 11110 011 1122347789999999999886521 368999994
Q ss_pred -Ceeccc------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 148 -NKSITE------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 148 -~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+..+.. ......++. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus 163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~~ 222 (242)
T 2znx_A 163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN-XDG 222 (242)
T ss_dssp TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-TTS
T ss_pred CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEec-cCC
Confidence 322210 001234444 12458999999999999999999 664
No 357
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=101.19 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=74.0
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++.... .+ ...+|.|.++..+|+|.|+|.
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~--~~--~~~~L~i~~~~~~D~G~Y~C~ 80 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA--EG--GLCRLRILAAERGDAGFYTCK 80 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEEC--GG--GEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC--CC--CEEEEEEccCCcCCCEEEEEE
Confidence 44443 34456788999999999999999999999999998876655554431 11 235899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcce
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
|.|..|. ....+.|.|.++
T Consensus 81 a~N~~g~----~~~~~~l~V~~~ 99 (99)
T 1u2h_A 81 AVNEYGA----RQCEARLEVRGE 99 (99)
T ss_dssp EEETTEE----EEEEEEEEEEC-
T ss_pred EEECCCc----eeEEEEEEEECC
Confidence 9999966 778888888763
No 358
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.63 E-value=2.1e-14 Score=114.14 Aligned_cols=162 Identities=15% Similarity=0.222 Sum_probs=97.0
Q ss_pred EEeeceEEecCCcEEEEEE-eccCceEEEEEc--Cccc------------eeeccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235 26 TYFGDTEIMEGAPINISCI-LTIFEQVKWQLN--GRNI------------NQSSVDSGFAATANLTEDNFKYSIHEAIL- 89 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~-~~~~~~v~W~~~--g~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~- 89 (323)
..+..+.+.+|++|+|.|. ..+.+.+.|+|. +... .......++........+.+.|.|.+++.
T Consensus 7 ~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~ 86 (245)
T 4ei6_B 7 QIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE 86 (245)
T ss_dssp EECSEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred eCCceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence 3456688999999999996 345679999992 2211 11111101111111224567788887754
Q ss_pred -CcceEEEeeccCCc------cceeeeee------eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235 90 -ESGYVQSSLFIPRM------NAITGNYD------IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK 149 (323)
Q Consensus 90 -~G~Y~C~~~~~~~~------~~~~~~~~------~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~ 149 (323)
+|.|+|.+.+.... ......+. ..|...+ +..|+.++|.|.+.+.+|. ...+.|+++|.
T Consensus 87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~~~g~ 165 (245)
T 4ei6_B 87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGK 165 (245)
T ss_dssp GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTE
T ss_pred HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCC-CeEEEEEECCE
Confidence 99999999853211 11111111 1222222 2348999999999885541 24899999998
Q ss_pred eccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 150 SITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 150 ~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
.+...... ++.+ .....|.|.....+| .|.|+|.+ .+..
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~~g~ytC~v-~~~~ 217 (245)
T 4ei6_B 166 EVHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG 217 (245)
T ss_dssp EECTTEEECSSCEESSTTSTTCCE-EEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred ECCCCcccccccccccccCCCCCE-EEEEEEEEcHHHhccCCCeEEEEE-EECC
Confidence 87651111 1112 223457888877777 99999999 5553
No 359
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.63 E-value=4.7e-17 Score=126.78 Aligned_cols=171 Identities=16% Similarity=0.276 Sum_probs=104.3
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
|....+.+|++++|.|.+.+.+|.+.+.|.| + +..+.... .+.+++ .....|.|.+++.+|+|.|+|.+ .
T Consensus 11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~g~Y~C~~-~ 86 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTA-A 86 (214)
T ss_dssp CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC-CEEEECTTTHHHHHHTCEEEEEE-C
T ss_pred cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE-EEEEEEEEeHHHcCCCCeEEEEE-e
Confidence 4444467899999999999876421158999 4 43332100 111222 23456888888889999999999 6
Q ss_pred CCCCCCCCceeeee---EEEecceeeeec--eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCe-eeeecCC
Q psy15235 188 PKSTNTTPLAQADF---DVIMKPTAKLVE--TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGR-IKLSEHP 259 (323)
Q Consensus 188 ~~~~~~~~~~~~~l---~v~~~p~~~~~~--~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~-~~~~~~~ 259 (323)
+.... ......+ .+..+|.+.+.. ...+..|+.+.|.|.+.|. |+ +.+.|++||..+...... .......
T Consensus 87 ~~~~~--~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~ 164 (214)
T 1ow0_A 87 YPESK--TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEP 164 (214)
T ss_dssp CSSCS--SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECS
T ss_pred cCCCC--CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccc
Confidence 66332 2222233 223466554322 2235678999999999885 54 489999999887543111 0011100
Q ss_pred --CCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 260 --EKG--TANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 260 --~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.++ ...+.|.|.....+|.|.|+|.|.|..-
T Consensus 165 ~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 165 SQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp CSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred cCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 111 1234566666655668999999999873
No 360
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.63 E-value=1.2e-14 Score=112.41 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=99.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc------cccccCcEE-e------ceeEEEEeeeecCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE------ATELSGRLT-Q------SKDSITIRKTTVDD 177 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~------~~~~~~~~~-~------~~~~l~i~~~~~~d 177 (323)
.|....+.+|++++|.|.+.+.. ..+.|||.. ..... .....+|+. . ....|.|.+++.+|
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 7 SPSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp SCSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred CCCeEEEccCCcEEEEEEEeCCC----eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 45666788999999999998754 379999843 21110 011245554 1 23589999999999
Q ss_pred CeeEEEEEEcCCCC---------CCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeee
Q psy15235 178 AGQYSCRLIDPKST---------NTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTY 246 (323)
Q Consensus 178 ~G~y~C~~~~~~~~---------~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~ 246 (323)
+|.|.|.+ .+..+ .........|.|...+....++...+..+ .+.|.|.+.|. |. +.+.|+++ ..+
T Consensus 83 ~G~Y~C~~-~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l 159 (207)
T 1ypz_E 83 SGTYFCAA-DTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKI 159 (207)
T ss_dssp CEEEEEEE-ECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEE
T ss_pred CEEEEEEE-ecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Ccc
Confidence 99999999 55421 00111234666664211111122222222 37999999765 54 68999999 665
Q ss_pred eccCCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccC
Q psy15235 247 FRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATR 291 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~ 291 (323)
.......... ....+.+..... +|.|.|+|.|.|..+.
T Consensus 160 ~~~~~~~~~~-------~~g~y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 160 VEFDPAIVIS-------PSGKYSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp EECCCEEEEC-------TTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred cCCccceEEc-------CCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence 4322222111 123344434444 6789999999998743
No 361
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.63 E-value=1.2e-14 Score=117.44 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=96.3
Q ss_pred EeeceEEecCCcEEEEEEec-cCceEEEEEc--Cccceeec------------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 27 YFGDTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQSS------------VDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
.+..+.+.+|++|+|.|.+. +.+.+.|+|. +....... ...++........++..|.|.+++.
T Consensus 33 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 112 (270)
T 3qib_D 33 TPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD 112 (270)
T ss_dssp ECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG
T ss_pred CCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH
Confidence 45668899999999999943 5679999993 22211100 0000111111234567788887764
Q ss_pred CcceEEEeeccCCc------cceeeeeee------CCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235 90 ESGYVQSSLFIPRM------NAITGNYDI------EPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~------~~~~~~~~~------~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~ 150 (323)
+|.|+|.+.+.... ......+.. .|...+ +..|+.++|.|.+.+..|. ...+.|+++|..
T Consensus 113 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~ 191 (270)
T 3qib_D 113 SALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKE 191 (270)
T ss_dssp CEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEE
T ss_pred CeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCC-CeEEEEEECCEE
Confidence 99999999853211 111111111 232222 2248999999999984431 248999999988
Q ss_pred ccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 151 ITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 151 ~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
+...... ++.+ .....|.|.....+| .|.|+|.+ .+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~~g~YtC~v-~~~~ 242 (270)
T 3qib_D 192 VHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG 242 (270)
T ss_dssp ECTTEEECSSCEESCTTSSSCCE-EEEEEEEEEHHHHHSTTCEEEEEE-EECC
T ss_pred CCCCcccccccccccccCCCCCE-EEEEEEEEcHHHhccCCCeEEEEE-EecC
Confidence 8642111 1112 223457777777777 99999999 6653
No 362
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.63 E-value=1.3e-14 Score=116.48 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=95.1
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEEc--Ccccee---ec-----------cCcceEEEeeeeCCeEEEEEeecc
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQ---SS-----------VDSGFAATANLTEDNFKYSIHEAI 88 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~ 88 (323)
.+..+.+.+|++|+|.|.+. +.+.+.|+|. +..... .. ...+.....+.......|.|.+++
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 87 (259)
T 3omz_A 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI 87 (259)
T ss_dssp ---CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred CCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence 35668899999999999954 4578999993 222111 00 011222222233455667777765
Q ss_pred --cCcceEEEeeccCCcc-------ceee---------------------eeeeCCceeEEecCCcEEEEEEeecCCCCC
Q psy15235 89 --LESGYVQSSLFIPRMN-------AITG---------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGD 138 (323)
Q Consensus 89 --~~G~Y~C~~~~~~~~~-------~~~~---------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~ 138 (323)
|+|.|+|.+.+..+.. .+.+ .+...+....+.+|++++|.|.+.+..+
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~-- 165 (259)
T 3omz_A 88 ENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWW-- 165 (259)
T ss_dssp GGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCS--
T ss_pred cccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccC--
Confidence 4999999998754310 1111 1122444456788999999999887533
Q ss_pred CceEEEEECC--eeccc--------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 139 DYQIVWYKGN--KSITE--------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 139 ~~~i~W~~~~--~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+.+.|+|.+ ..+.. .....+++. .....|.|.+++.+|+|.|.|.+.
T Consensus 166 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 229 (259)
T 3omz_A 166 SYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALG 229 (259)
T ss_dssp SCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEE
T ss_pred CceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEe
Confidence 6899999843 11110 001123443 224569999999999999999993
No 363
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.63 E-value=1.8e-15 Score=103.09 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=68.8
Q ss_pred eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
..++.+.|.|.+.|+|.|.+.|+++|..+..+... ..+.. .......++|.|.++..+|+|.|+|.|.|..|. .
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~ 88 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV-TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK----D 88 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEE-ECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE----E
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEe-cCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc----E
Confidence 45788999999999999999999999988755321 11111 111123567999999999999999999999966 8
Q ss_pred eeEEEEEEcceecC
Q psy15235 297 EAFVYVRVKGKSFG 310 (323)
Q Consensus 297 ~~~~~l~v~~~~~~ 310 (323)
...+.|.|.+.|.+
T Consensus 89 ~~~~~l~V~~~P~~ 102 (103)
T 1wwb_X 89 EKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEEECCSCCCCC
T ss_pred eEEEEEEECCCCCC
Confidence 89999999887753
No 364
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.63 E-value=9.8e-16 Score=119.64 Aligned_cols=150 Identities=13% Similarity=0.224 Sum_probs=89.0
Q ss_pred EecCCcEEEEEEec-----c-CceEEEEEcCccceeeccCcceEEEeeee----CCeEEEEEeecc--cCcceEEEeecc
Q psy15235 33 IMEGAPINISCILT-----I-FEQVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEAI--LESGYVQSSLFI 100 (323)
Q Consensus 33 v~~G~~v~L~C~~~-----~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~--~~G~Y~C~~~~~ 100 (323)
+.+|++++|.|.+. + .+.++|+|++..+.... ........ .....|.|.+++ |+|.|+|.+.+.
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~ 98 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNK 98 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCE----EEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEET
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcc----cccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECC
Confidence 78999999999943 2 26899999997664321 00000000 112356676654 499999999887
Q ss_pred CCccceeeee----e--eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEE
Q psy15235 101 PRMNAITGNY----D--IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLT 162 (323)
Q Consensus 101 ~~~~~~~~~~----~--~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~ 162 (323)
.........+ . ..|.+.+. ..|+.++|.|.+.+..|. ...|.|+++|..+...... ++.+
T Consensus 99 ~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~~~~~~~gt~- 176 (218)
T 2rgs_A 99 DLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPG-DISVEWTSNGHTEENYKDTAPVLDSDGSY- 176 (218)
T ss_dssp TCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSS-CCEEEEEETTEEECCEEECCCEECTTSCE-
T ss_pred cCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCC-CcEEEEEECCEeccCceecccEECCCCCE-
Confidence 5432111111 1 13333222 148999999999985431 2499999999877431110 0011
Q ss_pred eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 163 QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.....|.+.....+|.|.|+|.| .|.
T Consensus 177 ~~~s~l~v~~~~~~d~g~YtC~a-~n~ 202 (218)
T 2rgs_A 177 FIYSKLNMKTSKWEKTDSFSCNV-RHE 202 (218)
T ss_dssp EEEEEEEEEHHHHHHCSCEEEEE-ECT
T ss_pred EEEEEEEECHHHcCCCCeEEEEE-EcC
Confidence 11223445444445699999999 676
No 365
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.62 E-value=3.5e-15 Score=103.85 Aligned_cols=99 Identities=24% Similarity=0.193 Sum_probs=77.5
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. . .....|.|.+++.+|+|.|+|.
T Consensus 7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~--~--~~~~~L~I~~v~~~D~G~Y~C~ 81 (114)
T 2cqv_A 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVEN--S--ENGSKLTILAARQEHCGCYTLL 81 (114)
T ss_dssp CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEE--C--SSEEEEEETTCCTTTCEEEEEE
T ss_pred CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-CCEEEEE--c--CCEEEEEECCCChhcCEEEEEE
Confidence 34333 445677889999999999999999999999999887643 3444441 1 1367899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
|.|..|. ....+.|.|.+.|.+...
T Consensus 82 a~N~~g~----~~~~~~l~V~~~p~~P~~ 106 (114)
T 2cqv_A 82 VENKLGS----RQAQVNLTVVDKPDPPAG 106 (114)
T ss_dssp EECSSCE----EECCEEEEEECSCSCCCC
T ss_pred EEECCCc----EEEEEEEEEECCCCCCCC
Confidence 9999965 777888888877665543
No 366
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.62 E-value=6e-15 Score=114.21 Aligned_cols=148 Identities=12% Similarity=0.201 Sum_probs=86.3
Q ss_pred ecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEE---eeccc---CcceEEEeeccC
Q psy15235 34 MEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI---HEAIL---ESGYVQSSLFIP 101 (323)
Q Consensus 34 ~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~---~G~Y~C~~~~~~ 101 (323)
.+|++++|.|.+.+ ...++|+|+|..+..... . ......++.+.+.. ....+ +|.|+|.+.+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~--~--~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~ 91 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT--K--PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA 91 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE--C--CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc--C--CceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCc
Confidence 79999999999432 239999999976654210 0 00011133333221 12334 899999999876
Q ss_pred Cccceeeee----ee--CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e-----
Q psy15235 102 RMNAITGNY----DI--EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q----- 163 (323)
Q Consensus 102 ~~~~~~~~~----~~--~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~----- 163 (323)
+.......+ .+ .|.+.+. ..|..++|.|.+.+.+|. ...|.|+++|..+.... ..+.. .
T Consensus 92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~--~~~~~~~~~gt~ 168 (207)
T 1l6x_A 92 LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS-DIAVEWESNGQPENNYK--TTPPVLDSDGSF 168 (207)
T ss_dssp SSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEEECCEE--ECCCEECTTSCE
T ss_pred CCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECC-CeEEEEEECCeeccCcc--ccCceECCCCCE
Confidence 543221111 11 2333321 135669999999986531 35999999998775311 11111 1
Q ss_pred -ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 164 -SKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 164 -~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
....|.+.....+|.|.|+|.| .|.
T Consensus 169 ~~~s~l~i~~~~~~~~g~YtC~a-~n~ 194 (207)
T 1l6x_A 169 FLYSKLTVDKSRWQQGNVFSCSV-MHE 194 (207)
T ss_dssp EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred EEEEEEEECHHHcCCCCEEEEEE-EcC
Confidence 1223445555456799999999 676
No 367
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=101.47 Aligned_cols=94 Identities=24% Similarity=0.343 Sum_probs=73.1
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........... . . ....|.|.++..+|+|.|+|.
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~-~--~~~~L~i~~v~~~D~G~Y~C~ 80 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-E-K--GLHSLIFEVVRASDAGAYACV 80 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEE-T-T--TEEEEEESSCCGGGCEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEc-C-C--CeEEEEECCCCcccCEEEEEE
Confidence 45443 44566788999999999999999999999999998865433222221 1 1 236899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcce
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
|.|..|. ....+.|.|.++
T Consensus 81 a~n~~g~----~~~~~~l~V~~~ 99 (100)
T 2kdg_A 81 AKNRAGE----ATFTVQLDVLAK 99 (100)
T ss_dssp EEETTEE----EEEEEEEEEECC
T ss_pred EEcCCCe----EEEEEEEEEEec
Confidence 9999966 788888888765
No 368
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.62 E-value=7.4e-15 Score=117.60 Aligned_cols=181 Identities=18% Similarity=0.251 Sum_probs=106.3
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEeeee
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRKTT 174 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~ 174 (323)
...+.+|++++|.|.+.+.... ...+.|||.. ..... ...+.+|+. .....|+|.+++
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFT-NSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR 110 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred cEEEcCCCCEEEEEEeeccccC-CCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence 3457889999999999763211 4689999732 11100 112345555 234569999999
Q ss_pred cCCCeeEEEEEEcCCCC---------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CC-CCcEE
Q psy15235 175 VDDAGQYSCRLIDPKST---------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SP-PPTVE 238 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~---------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p-~~~~~ 238 (323)
.+|+|.|.|.+ .+..+ .........+.|. .+|.+. ..+...+.+|+.++|.|.+.+ .| ++.+.
T Consensus 111 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~ 189 (256)
T 3sob_H 111 AEDTAVYYCAR-GSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 189 (256)
T ss_dssp GGGCEEEEEEE-ESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred cccCEEEEEEE-ecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEE
Confidence 99999999999 54310 0011223345554 244444 333445678999999999976 45 34699
Q ss_pred EEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
| ++..+.............++ ....+.|+|.....+| |.|+|.|.|..+. ......+.+.
T Consensus 190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~----~~~~~~~~~~ 250 (256)
T 3sob_H 190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKKVEPK 250 (256)
T ss_dssp E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT----EEEEEECCCC
T ss_pred E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC----cceEEEeccc
Confidence 9 55443211000000000111 1234689999999999 9999999999855 4555555444
No 369
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.62 E-value=4.3e-14 Score=112.03 Aligned_cols=161 Identities=14% Similarity=0.218 Sum_probs=96.2
Q ss_pred EeeceEEecCCcEEEEEEec-cCceEEEEEcC--ccce------------eeccCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 27 YFGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNIN------------QSSVDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
.+..+.+.+|++|+|.|.+. +.+.+.|+|.. .... ......+..+.. ...+...|.|.+++.
T Consensus 8 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D 86 (240)
T 3q5y_A 8 SPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ-FDDYHSEMNMSALELED 86 (240)
T ss_dssp ECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCCGGG
T ss_pred CcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEe-CCCCEEEEEECcCChhH
Confidence 45668899999999999943 56799999932 1111 111111222211 134567788887764
Q ss_pred CcceEEEeeccCC--c---c--ceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 90 ESGYVQSSLFIPR--M---N--AITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 90 ~G~Y~C~~~~~~~--~---~--~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
+|.|+|.+.+... . . .+.+... ..|...+ +..|+.++|.|.+.+.+|. ...+.|+++|..+
T Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~~~g~~l 165 (240)
T 3q5y_A 87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD-HVELSWWVNGKEV 165 (240)
T ss_dssp CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEEE
T ss_pred CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECC-CeEEEEEECCEEC
Confidence 9999999973211 1 1 1111110 1222222 2348999999999985432 3489999999987
Q ss_pred cccccccCc-EE------eceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 152 TEATELSGR-LT------QSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 152 ~~~~~~~~~-~~------~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
......... .. .....|.|.....+| .|.|+|.+ .+..
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v-~~~~ 211 (240)
T 3q5y_A 166 HSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQV-QFHG 211 (240)
T ss_dssp CTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred cCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEE-EcCC
Confidence 642111110 11 123458888888888 67999999 5553
No 370
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.62 E-value=1.1e-14 Score=114.31 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=100.3
Q ss_pred ceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+.++.+.+|++|+|.|.+. + .+.+.|+|+. ..+.. . ....+..+..+...+...|
T Consensus 2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (225)
T 1op3_H 2 VQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYL 81 (225)
T ss_dssp CEEEEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred ceEEcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEE
Confidence 356677788999999999999954 2 5789999953 22211 0 0112222222222456778
Q ss_pred EEeeccc--CcceEEEeeccCC-----c--c-ceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPR-----M--N-AITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY 140 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~-----~--~-~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~ 140 (323)
.|.+++. +|.|+|.+.+..+ . . .....+.+ .|.+.. +..|+.++|.|.+.+..| .+
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p 159 (225)
T 1op3_H 82 QMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP--EP 159 (225)
T ss_dssp EECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBS--SC
T ss_pred EECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEEC--CC
Confidence 8887764 9999999987642 1 0 00111111 122222 246899999999998743 44
Q ss_pred -eEEEEECCeecccc--c---cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 141 -QIVWYKGNKSITEA--T---ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 141 -~i~W~~~~~~~~~~--~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|.|++++..+... . ..++.+ .....|.|.+...+| |.|+|.| .|.
T Consensus 160 ~~v~W~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~ 211 (225)
T 1op3_H 160 VTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 211 (225)
T ss_dssp CEEECCTTSCCTTCEECCCEECTTSCE-EEEEEEEEEGGGTTC-CCCCEEE-EEG
T ss_pred eEEEEecCCCcCCeEecCceeCCCCCE-EEEEEEEEechhcCC-CcEEEEE-EcC
Confidence 99999998764210 0 011222 224568888888778 9999999 665
No 371
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.62 E-value=5.7e-15 Score=99.96 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=70.4
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........... ......|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 86 (99)
T 1g1c_A 11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAG 86 (99)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEc----CCCEEEEEECCCCcCCCEEEEEEEEECCC
Confidence 44567789999999999999999999999999998865433322210 01356899999999999999999999996
Q ss_pred CCCCCceeEEEEEEcc
Q psy15235 291 RNSQPNEAFVYVRVKG 306 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~ 306 (323)
. ....+.|.|.+
T Consensus 87 ~----~~~~~~l~V~~ 98 (99)
T 1g1c_A 87 E----TSSHAFLLVQA 98 (99)
T ss_dssp E----EEEEEEEEEEC
T ss_pred c----EEEEEEEEEec
Confidence 6 77788888865
No 372
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=104.23 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=76.9
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++.+.... ....+|.|.+++.+|+|.|+|.|.|..|
T Consensus 21 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 97 (116)
T 2kkq_A 21 KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN---TGRVTLLIKDVNKKDAGWYTVSAVNEAG 97 (116)
T ss_dssp CCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT---TCEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred CCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC---CCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence 5557788999999999999999999999999999887555566554211 1234899999999999999999999996
Q ss_pred CCCCCceeEEEEEEcceecCc
Q psy15235 291 RNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~~~ 311 (323)
. ....+.|.|...|...
T Consensus 98 ~----~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 98 V----TTCNTRLDVTARPNQT 114 (116)
T ss_dssp E----EEEEEEEEEECCSCCC
T ss_pred e----EEEEEEEEEeCCCCCC
Confidence 6 7788889998877653
No 373
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.62 E-value=3e-15 Score=116.63 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=91.0
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee------------ccCcceEEEeeeeCCeEEEEEe
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS------------SVDSGFAATANLTEDNFKYSIH 85 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~ 85 (323)
.+..+.++.+.+|++|+|.|.+.+ .+.+.|+|.. ...... ....++ +......+.+.|.|.
T Consensus 2 ~l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~L~I~ 80 (215)
T 3nl4_H 2 SVEESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGR-FTISKTSTTVDLKIT 80 (215)
T ss_dssp EEEEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTT-EEEEECSSEEEEEES
T ss_pred eeEcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCC-EEEEeeCCEEEEEEC
Confidence 355677889999999999999642 5689999842 221110 001111 222235667778888
Q ss_pred eccc--CcceEEEeeccCCc------cceeeeee----eCCcee------EEecCCcEEEEEEeecCCCCCCceEEEEEC
Q psy15235 86 EAIL--ESGYVQSSLFIPRM------NAITGNYD----IEPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVWYKG 147 (323)
Q Consensus 86 ~~~~--~G~Y~C~~~~~~~~------~~~~~~~~----~~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~ 147 (323)
+++. +|.|+|.+.+..+. ......+. ..|.+. .+..|+.++|.|.+.+.+|. ...+.|+++
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~-~~~v~W~~~ 159 (215)
T 3nl4_H 81 SPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPE-PVTVTWNSG 159 (215)
T ss_dssp SCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSS-CCEEEEGGG
T ss_pred CCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCC-CeEEEEeeC
Confidence 7764 99999999876431 11111111 022221 13458999999999886542 457889999
Q ss_pred CeeccccccccCcEEeceeEEEE---eeeecCCCeeEEEEEEcCC
Q psy15235 148 NKSITEATELSGRLTQSKDSITI---RKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~ 189 (323)
+..+... ...........+.+ ..+...| |.|+|.| .|.
T Consensus 160 g~~~~~~--~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v-~~~ 200 (215)
T 3nl4_H 160 TLTNGVR--TFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNV-AHP 200 (215)
T ss_dssp TBCTTEE--ECCCEECTTSCEEEEEEEEECC----CCEEEE-EEG
T ss_pred CEECCeE--ecCceECCCCCEEEEEEEEEeccC-CEEEEEE-EeC
Confidence 8755321 01111111222333 3455667 9999999 666
No 374
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.62 E-value=5.6e-14 Score=111.72 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=98.0
Q ss_pred EeeceEEecCCcEEEEEEec--cCceEEEEEc--Ccccee-----------eccCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235 27 YFGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQ-----------SSVDSGFAATANLTEDNFKYSIHEAIL-- 89 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~-- 89 (323)
.+..+.+.+|++|+|.|.+. +.+.+.|+|. +..... .....+..+..+ ..+...|.|.+++.
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 85 (245)
T 3nfj_J 7 WPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKKLLLSD 85 (245)
T ss_dssp ECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESSCCGGG
T ss_pred CCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECCCChhh
Confidence 45678899999999999954 5679999993 221111 001112222221 35677888888764
Q ss_pred CcceEEEeeccCC-----c---cceeeeeee------CCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235 90 ESGYVQSSLFIPR-----M---NAITGNYDI------EPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148 (323)
Q Consensus 90 ~G~Y~C~~~~~~~-----~---~~~~~~~~~------~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~ 148 (323)
+|.|+|.+.+..+ . ......+.. .|.+.+ +..|+.++|.|.+.+.+|. ...+.|+++|
T Consensus 86 ~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g 164 (245)
T 3nfj_J 86 SGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPD-HVELSWWVNG 164 (245)
T ss_dssp CEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETT
T ss_pred CEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCC-CEEEEEEECC
Confidence 9999999987221 1 111111111 233322 2238999999999985432 3589999999
Q ss_pred eeccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 149 KSITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 149 ~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
..+...... ++.+ .....|.|.....+| .|.|+|.+ .+..
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~~YtC~v-~~~~ 217 (245)
T 3nfj_J 165 KEVHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG 217 (245)
T ss_dssp EEECTTEEECSSCEESSSSSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EECC
T ss_pred EECCCCcccccccccccccCCCCCE-EEEEEEEECHHHhccCCCeEEEEE-EECC
Confidence 887652111 1112 223467787777777 66999999 6653
No 375
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=103.89 Aligned_cols=95 Identities=24% Similarity=0.370 Sum_probs=75.4
Q ss_pred Eecceeee----eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235 204 IMKPTAKL----VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279 (323)
Q Consensus 204 ~~~p~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 279 (323)
..+|.+.. +....+.+|+.+.|.|.+.|+|.|.+.|++++..+.. .++.+.. ......|.|.++..+|+|
T Consensus 19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~----~~~~~~L~i~~~~~~D~G 92 (118)
T 2e7c_A 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHVRT----SDFDTVFFVRQAARSDSG 92 (118)
T ss_dssp SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC--SSCEEEE----CSSEEEEEESSCCTTTCE
T ss_pred ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC--CcEEEEE----CCCeEEEEECCCChhcCE
Confidence 34666643 3467788999999999999999999999999998852 3333321 113567999999999999
Q ss_pred EEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 280 NYYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 280 ~y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.|+|.|.|..|. ....+.|.|.++|
T Consensus 93 ~Y~C~a~N~~G~----~~~~~~l~V~~~P 117 (118)
T 2e7c_A 93 EYELSVQIENMK----DTATIRIRVVEKA 117 (118)
T ss_dssp EEEEEEECSSCE----ECCEEEEEEECCC
T ss_pred EEEEEEEeCCCe----EEEEEEEEEEcCC
Confidence 999999999965 7888899988776
No 376
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.61 E-value=2.4e-14 Score=113.99 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=100.3
Q ss_pred EeeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEEEEEeecc
Q psy15235 27 YFGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFKYSIHEAI 88 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~ 88 (323)
.+..+.+.+|++|+|.|.+. + .+.+.|+|++ ..+.... ...+ +..........|.|.+++
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~ 84 (247)
T 1svz_A 7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDR--FSGSGSGTDFTLKISRVE 84 (247)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCC
T ss_pred cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCc--EEeccCCCEEEEEECCCC
Confidence 45678899999999999953 3 4789999953 2221100 1112 222334566788888776
Q ss_pred c--CcceEEEeeccCCc-----cceeee----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235 89 L--ESGYVQSSLFIPRM-----NAITGN----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW 144 (323)
Q Consensus 89 ~--~G~Y~C~~~~~~~~-----~~~~~~----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W 144 (323)
. +|.|+|.+.+.... ..+.+. +.+ .+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus 85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W 163 (247)
T 1svz_A 85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFT-DYSMHW 163 (247)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEE
T ss_pred HHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccC-CcEEEE
Confidence 4 99999999876432 111111 111 2222347889999999999887421 468999
Q ss_pred EECC--eecc------c-------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 145 YKGN--KSIT------E-------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 145 ~~~~--~~~~------~-------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
+|++ .... . ......++. .....|.|.+++.+|+|.|.|.+ .+
T Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n 227 (247)
T 1svz_A 164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVR-DR 227 (247)
T ss_dssp EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-EE
T ss_pred EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEE-ec
Confidence 9963 2110 0 001234444 12468999999999999999999 55
No 377
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=101.31 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=74.2
Q ss_pred ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
.+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+.. . .....|.|.++..+|+|.|+|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~--~--~~~~~L~i~~~~~~D~G~Y~C 81 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-SKIHYTN--T--SGVLTLEILDCHTDDSGTYRA 81 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEE--E--TTEEEEEECSCCGGGCEEEEE
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC-CCEEEEE--C--CCEEEEEEcCCCcccCEEEEE
Confidence 344444 344677889999999999999999999999999888644 3444331 0 124689999999999999999
Q ss_pred EEeecccCCCCCceeEEEEEEccee
Q psy15235 284 HGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
.|.|..|. ....+.|.|.++.
T Consensus 82 ~a~N~~G~----~~~~~~l~V~~~~ 102 (103)
T 3qp3_A 82 VCTNYKGE----ASDYATLDVTGGD 102 (103)
T ss_dssp EEEETTEE----EEEEEEEEEECC-
T ss_pred EEEeCCCc----EEEEEEEEEECCC
Confidence 99999966 7888888887753
No 378
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.61 E-value=2.3e-14 Score=116.30 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=101.7
Q ss_pred eEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccce---ee-----------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNIN---QS-----------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~---~~-----------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+..+.+.+|++|+|.|.+. +.+.+.|+|.. .... .. ....+..+..+.....+.|.
T Consensus 3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 3 QLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp CEECCCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred eEEcCCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 34457778899999999999954 34789999842 1111 10 01122223222345667888
Q ss_pred Eeecc--cCcceEEEeeccC------------Cc-cceeeee-----------------ee--CCceeEEecCCcEEEEE
Q psy15235 84 IHEAI--LESGYVQSSLFIP------------RM-NAITGNY-----------------DI--EPKYKVFEYRVPFTLKC 129 (323)
Q Consensus 84 i~~~~--~~G~Y~C~~~~~~------------~~-~~~~~~~-----------------~~--~~~~~~~~~g~~v~l~C 129 (323)
|.+++ |+|.|+|.+.+.. +. ..+.+.. .+ .+. ..+.+|++++|.|
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C 161 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC 161 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence 88876 4999999998751 11 1111111 11 333 5688999999999
Q ss_pred EeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 130 NVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 130 ~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+.+..+. .+.+.|||. +..... ......|+. .....|.|.+++.+|+|.|.|.+ .+.
T Consensus 162 ~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~ 233 (280)
T 3fku_X 162 TGNSNNVG-NQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCST-WDS 233 (280)
T ss_dssp ECCCCCCC-TTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE-EET
T ss_pred EecCCCCC-CceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEE-ecC
Confidence 99883321 378999983 222210 011134443 33456999999999999999999 554
No 379
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.61 E-value=1.4e-13 Score=110.55 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=102.1
Q ss_pred ceEE-EeeceEEecCCcEEEEEEec--c------CceEEEEEc--Cccceee---------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKIT-YFGDTEIMEGAPINISCILT--I------FEQVKWQLN--GRNINQS---------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~-~~~~~~v~~G~~v~L~C~~~--~------~~~v~W~~~--g~~~~~~---------~~~~~~~~~~~~~~~~~~l 82 (323)
..+. .+..+.+.+|++|+|.|.+. + .+.+.|+|+ |..+... ....+ +..........|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R--~~~~~~~~~~~L 83 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDR--FTGSGSGTDFTL 83 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCcc--EEEecCCCEEEE
Confidence 3444 45678899999999999953 3 468999995 3322110 01112 222234566788
Q ss_pred EEeeccc--CcceEEEeeccCCc-----cceeee----------------------eee-CCceeEEecCCcEEEEEEee
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPRM-----NAITGN----------------------YDI-EPKYKVFEYRVPFTLKCNVT 132 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~----------------------~~~-~~~~~~~~~g~~v~l~C~~~ 132 (323)
.|.+++. +|.|+|.+.+.... ..+.+. +.+ .+....+.+|++++|.|.+.
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~ 163 (264)
T 2gjj_A 84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS 163 (264)
T ss_dssp EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence 8888764 99999999875431 111111 111 12223577899999999998
Q ss_pred cCCCCCCceEEEEECC--eeccc-----c--------ccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 133 SPPPGDDYQIVWYKGN--KSITE-----A--------TELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 133 ~~~~~~~~~i~W~~~~--~~~~~-----~--------~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.++. .+.+.|+++. ..... . ....+++. .....|.|.+++.+|+|.|.|.+ .+.
T Consensus 164 ~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~ 239 (264)
T 2gjj_A 164 GYSFT-GYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVR-SGN 239 (264)
T ss_dssp SSCGG-GSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-ECS
T ss_pred CCccC-CeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEE-ecC
Confidence 87621 2689999963 21110 0 01133443 23568999999999999999999 553
No 380
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.60 E-value=2e-13 Score=125.59 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=140.7
Q ss_pred cCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeee-eCCeEEEEEeec--ccCcceEEEeeccCCcc-ceee
Q psy15235 35 EGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANL-TEDNFKYSIHEA--ILESGYVQSSLFIPRMN-AITG 108 (323)
Q Consensus 35 ~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~~-~~~~ 108 (323)
.++++.|.|.+ .|.+.+.|.++|..+... . ...+.+.. ....+.+.+..+ .+.|.|.|......... ...|
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~--~-~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p 166 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTW--N-RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP 166 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSC--E-EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCce--e-EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence 35689999995 456899999999776432 0 11111111 022222332222 22566665432111111 1122
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEE-EE--ECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIV-WY--KGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~-W~--~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
.+. .+....+..|++++|.|.+.+.| .+.+. |+ ++|..+.. ..... .....|.|.++...|.|.|
T Consensus 167 ~~~-~~~~~~v~~G~~v~l~C~~~g~P---~p~i~~W~~~~~g~~l~~----~~~~~~~~~~~~~~l~I~~~~~~d~g~Y 238 (731)
T 2v5y_A 167 HFL-RIQNVEVNAGQFATFQCSAIGRT---VAGDRLWLQGIDVRDAPL----KEIKVTSSRRFIASFNVVNTTKRDAGKY 238 (731)
T ss_dssp EEC-CCCCEEEETTSCEEEEEEEESCC---CTTCEEEEEESSSCCEEE----EEEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred ccc-cccceEEeCCCcEEEEEEeCCCC---CCceeEEEecCCCccccc----cceEEeccccceEEEEEcccccccCeEE
Confidence 222 44456688999999999999988 67777 88 67776654 11111 2347899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec---CCC-C--cEEEEECCeeeeccCCeeee
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG---SPP-P--TVEWRIGNDTYFRSQGRIKL 255 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g---~p~-~--~~~W~~~~~~~~~~~~~~~~ 255 (323)
+|.| .|..+.. ......|.|..+|....++.........+.|.|.... ..+ . .+.|...+.... ....
T Consensus 239 ~c~A-~n~~G~~-~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~----~~~~ 312 (731)
T 2v5y_A 239 RCMI-RTEGGVG-ISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWN----DRQP 312 (731)
T ss_dssp EEEE-EETTEEE-ECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCE----EEEE
T ss_pred EEEE-ECCCCCc-ceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCce----EEec
Confidence 9999 6774331 3445667777777554333344445678899987632 222 2 366655432111 1111
Q ss_pred ecCCCCCCcceeEEEeecCcCCCeEEEEEEe--ecccC
Q psy15235 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGN--NVATR 291 (323)
Q Consensus 256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~--n~~g~ 291 (323)
. ....++|.++...+...|+|.|. |..|.
T Consensus 313 ~-------~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~ 343 (731)
T 2v5y_A 313 V-------DSTSYKIGHLDPDTEYEISVLLTRPGEGGT 343 (731)
T ss_dssp C-------CSSEEEECSCCTTCEEEEEEEEECSSTTCS
T ss_pred c-------CcceEEEeCCCCCCEEEEEEEEEecCCCcc
Confidence 1 24678999998888888889999 99887
No 381
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.60 E-value=3.6e-15 Score=99.71 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=66.4
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
+....+.+|+.+.|.|.+.|+|.|.+.|++++ ..+... ...... .....|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 81 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-LLVDAK------SSTTSIFFPSAKRADSGNYKLKVKNEL 81 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-SEEEEE------TTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-EEEEec------CCEEEEEECCCChhcCEEEEEEEEcCC
Confidence 34567889999999999999999999999999 766432 222211 135889999999999999999999999
Q ss_pred cCCCCCceeEEEEEEc
Q psy15235 290 TRNSQPNEAFVYVRVK 305 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~ 305 (323)
|. ....+.|.|+
T Consensus 82 G~----~~~~~~l~V~ 93 (93)
T 1wit_A 82 GE----DEAIFEVIVQ 93 (93)
T ss_dssp EE----EEEEEEEEEC
T ss_pred Ce----EEEEEEEEEC
Confidence 65 7778877763
No 382
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.60 E-value=3.9e-14 Score=114.18 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=96.3
Q ss_pred EeeceEEecCCcEEEEEEe-ccCceEEEEE--cCccceee------------ccC-cceEEEeeeeCCeEEEEEeecc--
Q psy15235 27 YFGDTEIMEGAPINISCIL-TIFEQVKWQL--NGRNINQS------------SVD-SGFAATANLTEDNFKYSIHEAI-- 88 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~--~g~~~~~~------------~~~-~~~~~~~~~~~~~~~l~i~~~~-- 88 (323)
.+..+.+.+|++|+|.|.+ .+.+.+.|+| .+...... ... .+..+. ....++..|.|.+++
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~sL~I~~v~~~ 110 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAV-RPEGSVSTLKIQRTERG 110 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEE-CTTSSSEEEEECSCCGG
T ss_pred CCCEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEE-ecCCCEEEEEECCCCcc
Confidence 3456789999999999995 3567999999 33322110 011 122111 113456778887765
Q ss_pred cCcceEEEeeccCCc--c----ceeeeee--e--CCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235 89 LESGYVQSSLFIPRM--N----AITGNYD--I--EPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI 151 (323)
Q Consensus 89 ~~G~Y~C~~~~~~~~--~----~~~~~~~--~--~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~ 151 (323)
|+|.|+|.+.+.... . .+.+... . .|...+ +..|+.++|.|.+.+.+|. ...+.|+++|..+
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~~~g~~l 189 (268)
T 3pl6_D 111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEV 189 (268)
T ss_dssp GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEESSSEE
T ss_pred cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCC-CeEEEEEECCEEC
Confidence 499999999863111 1 1111110 0 222222 2348999999999986641 2399999999887
Q ss_pred cccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235 152 TEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS 190 (323)
Q Consensus 152 ~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 190 (323)
...... ++.+ .....|.|.....+| +|.|+|.+ .+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~~~~~d~~g~YtC~v-~~~~ 239 (268)
T 3pl6_D 190 HSGVCTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG 239 (268)
T ss_dssp CTTEEECSSCEESSTTCTTCCE-EEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred CCCeEeccccccccccCCCCcE-EEEEEEEEcHHHhccCCCEEEEEE-EcCC
Confidence 541111 1112 223456777777677 99999999 5653
No 383
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.60 E-value=4.8e-15 Score=118.99 Aligned_cols=171 Identities=17% Similarity=0.262 Sum_probs=100.2
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE------eceeEEEEeeeec
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT------QSKDSITIRKTTV 175 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~------~~~~~l~i~~~~~ 175 (323)
...+.+|++++|.|.+.+.... ...+.|||.. .... . ...+.+|+. .....|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 87 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLS-RYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQT 87 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeccccCC-ceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCH
Confidence 4567889999999999763211 4589999732 1110 0 112345555 2345699999999
Q ss_pred CCCeeEEEEEEcCCCC------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecC-CC-CcEEEEEC
Q psy15235 176 DDAGQYSCRLIDPKST------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIG 242 (323)
Q Consensus 176 ~d~G~y~C~~~~~~~~------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~ 242 (323)
+|+|.|.|.+ .+... .........|.|. .+|.+. ..+...+..|+.++|.|.+.+. |. +.+.| +
T Consensus 88 ~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~ 164 (263)
T 3iu4_H 88 DDTAMYYCAR-SGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--N 164 (263)
T ss_dssp GGCEEEEEEE-EECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--G
T ss_pred HHCEEEEEEE-EeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--C
Confidence 9999999999 44310 0011122345553 245444 3333445689999999999775 43 57999 4
Q ss_pred CeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 243 NDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+..+.............++ ....+.|+|.....+| |.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 213 (263)
T 3iu4_H 165 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 213 (263)
T ss_dssp GGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGT
T ss_pred CcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCC
Confidence 4433211000000000111 1234679999998888 9999999999854
No 384
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.59 E-value=2.7e-14 Score=112.25 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=97.0
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc--C----ceEEEEEc--Ccccee---e----------ccCcceEEEeeeeCCeEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI--F----EQVKWQLN--GRNINQ---S----------SVDSGFAATANLTEDNFK 81 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~----~~v~W~~~--g~~~~~---~----------~~~~~~~~~~~~~~~~~~ 81 (323)
..+..+.++.+.+|++|+|.|.+.+ . +.+.|+|+ +..+.. . ....+..+..+...+...
T Consensus 2 v~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (228)
T 3bae_H 2 VTLKESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVF 81 (228)
T ss_dssp CEEEEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEE
T ss_pred cEEeCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEE
Confidence 3456677889999999999999543 2 78999985 332211 0 011122222222234577
Q ss_pred EEEeeccc--CcceEEEeeccCC------c---cceeeeeee------CCcee------EEecCCcEEEEEEeecCCCCC
Q psy15235 82 YSIHEAIL--ESGYVQSSLFIPR------M---NAITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGD 138 (323)
Q Consensus 82 l~i~~~~~--~G~Y~C~~~~~~~------~---~~~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~ 138 (323)
|.|.+++. +|.|+|.+.+..+ . ......+.+ .|.+. .+..|+.++|.|.+.+..|
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P-- 159 (228)
T 3bae_H 82 MKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP-- 159 (228)
T ss_dssp EEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBS--
T ss_pred EEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeC--
Confidence 88887765 9999999987542 0 000011111 12221 1357999999999998643
Q ss_pred Cc-eEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 139 DY-QIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 139 ~~-~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+ .|.|++++..+..... ..+.+ .....|.|.....+| |.|+|.+ .|.
T Consensus 160 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~d~-g~YtC~~-~n~ 212 (228)
T 3bae_H 160 EPVTLTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-ESITCNV-AHP 212 (228)
T ss_dssp SCCEEEEGGGTCCTTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEG
T ss_pred CCEEEEEeeCCcccCceEcCceeCCCcE-EEEEEEEEEhhhcCC-CcEEEEE-EEC
Confidence 45 9999998875421000 01111 234568888877756 9999999 666
No 385
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.59 E-value=3.3e-15 Score=118.19 Aligned_cols=155 Identities=10% Similarity=0.156 Sum_probs=89.1
Q ss_pred EecCCcEEEEEEec-----cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235 33 IMEGAPINISCILT-----IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN 104 (323)
Q Consensus 33 v~~G~~v~L~C~~~-----~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~ 104 (323)
+.+|++++|.|.+. |.+ .++|+|++..+.....................|.|.++. |+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 77999999999943 334 899999886654321000000000000123456666554 5999999998876543
Q ss_pred ceeeee----e--eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeE
Q psy15235 105 AITGNY----D--IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDS 167 (323)
Q Consensus 105 ~~~~~~----~--~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~ 167 (323)
.....+ . ..|.+.+. ..|+.++|.|.+.+.+|. ...|.|++||..+........... .....
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~ 187 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPP-DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSK 187 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECC-CeEEEEEECCEECCCceecCceECCCCCEEEEEE
Confidence 221111 1 13333321 237889999999985542 358999999988754111000001 11223
Q ss_pred EEEeeeecCCCeeEEEEEEcCC
Q psy15235 168 ITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 168 l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.|.....+|.|.|+|.+ .|.
T Consensus 188 l~v~~~~~~~~g~YtC~v-~n~ 208 (239)
T 1i1c_A 188 LNVKKETWQQGNTFTCSV-LHE 208 (239)
T ss_dssp EEEEHHHHHTTCCEEEEE-ECT
T ss_pred EEEChhhcCCCCEEEEEE-ECC
Confidence 444444445799999999 676
No 386
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.59 E-value=7e-14 Score=112.72 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=102.3
Q ss_pred CCceEEE-eeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEE
Q psy15235 21 ADGKITY-FGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFK 81 (323)
Q Consensus 21 ~~~~i~~-~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~ 81 (323)
....+.. +..+.+.+|++|+|.|.+. + .+.+.|+|++ ..+.... ...+ +..........
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r--~~~~~~~~~~~ 91 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDR--FSGSGSGTDFT 91 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCccc--EEEEcCCCEEE
Confidence 3444544 5678899999999999953 2 3789999953 2221100 1111 22233456678
Q ss_pred EEEeeccc--CcceEEEeeccCCc-----cceeeee--------------------------ee-CCceeEEecCCcEEE
Q psy15235 82 YSIHEAIL--ESGYVQSSLFIPRM-----NAITGNY--------------------------DI-EPKYKVFEYRVPFTL 127 (323)
Q Consensus 82 l~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~--------------------------~~-~~~~~~~~~g~~v~l 127 (323)
|.|.+++. +|.|+|.+.+.... ..+.+.. .+ .+....+.+|++++|
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 88887764 99999999876331 1111110 01 122345778999999
Q ss_pred EEEeecCCCCCCceEEEEEC--Ceeccc---------------cccccCcEEe------ceeEEEEeeeecCCCeeEEEE
Q psy15235 128 KCNVTSPPPGDDYQIVWYKG--NKSITE---------------ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 128 ~C~~~~~~~~~~~~i~W~~~--~~~~~~---------------~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.|.+.+.++. .+.+.|+++ +..+.. .....+++.. ....|.|.+++.+|+|.|+|.
T Consensus 172 ~C~~~~~~~~-~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 250 (268)
T 1x9q_A 172 SCVTSGFTFG-HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT 250 (268)
T ss_dssp EEEEESSCGG-GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEecCcccc-ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence 9999886532 368999985 222110 0112345541 246899999999999999999
Q ss_pred EEcC
Q psy15235 185 LIDP 188 (323)
Q Consensus 185 ~~~~ 188 (323)
+ .+
T Consensus 251 a-~~ 253 (268)
T 1x9q_A 251 G-AS 253 (268)
T ss_dssp E-EE
T ss_pred E-cc
Confidence 9 44
No 387
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=101.13 Aligned_cols=90 Identities=24% Similarity=0.476 Sum_probs=70.3
Q ss_pred Eecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235 204 IMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282 (323)
Q Consensus 204 ~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 282 (323)
..+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ... ....|.|.++..+|+|.|+
T Consensus 9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-~~~-------~~~~L~i~~v~~~D~G~Y~ 80 (99)
T 2yr3_A 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-CEA-------GVAELHIQDALPEDHGTYT 80 (99)
T ss_dssp CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-EET-------TEEEEEECSCCTTCCBCEE
T ss_pred ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-eeC-------CeEEEEECCCChhhCEEEE
Confidence 3455554 445677889999999999999999999999999887543221 111 3578999999999999999
Q ss_pred EEEeecccCCCCCceeEEEEEEc
Q psy15235 283 CHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 283 C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
|.|.|..|. ....+.|.|+
T Consensus 81 C~a~N~~g~----~~~~~~l~V~ 99 (99)
T 2yr3_A 81 CLAENALGQ----VSCSAWVTVH 99 (99)
T ss_dssp EEEECSSCE----EEEECCEEEC
T ss_pred EEEEECCCe----EEEEEEEEEC
Confidence 999999965 6777777663
No 388
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.59 E-value=1.4e-14 Score=113.76 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=103.7
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEE------eceeEEEEee
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLT------QSKDSITIRK 172 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~------~~~~~l~i~~ 172 (323)
+....+.+|++++|.|.+.+.... ...+.|||.. .. +.. ...+.+|+. .....|+|.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFL-DSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT 85 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred CCCEEEecCCCEEEEEEecCcccc-CCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence 334668899999999999763211 4689999832 11 100 112235554 2346699999
Q ss_pred eecCCCeeEEEEEEcCCCC-------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecC-C-CCcEE
Q psy15235 173 TTVDDAGQYSCRLIDPKST-------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGS-P-PPTVE 238 (323)
Q Consensus 173 ~~~~d~G~y~C~~~~~~~~-------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~ 238 (323)
++.+|+|.|.|.+ .+... .........|.|. .+|.+. .++...+.+|+.+.|.|.+.+. | ++.+.
T Consensus 86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~ 164 (226)
T 3mlr_H 86 LQASDTGKYFCTR-LYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 164 (226)
T ss_dssp CCGGGCEEEEEEE-EEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred CCcccCEEEEEeE-ccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEE
Confidence 9999999999999 43210 0001122245553 245454 3333445679999999999774 5 35799
Q ss_pred EEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 239 WRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 239 W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
| ++..+.............++ ....+.|+|.....+| |.|+|.|.|..+.
T Consensus 165 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 215 (226)
T 3mlr_H 165 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 215 (226)
T ss_dssp E--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred E--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence 9 44332211000000000111 1234689999999889 9999999999854
No 389
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=104.77 Aligned_cols=94 Identities=29% Similarity=0.413 Sum_probs=76.4
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....++... ...+|.|.+++.+|+|.|+|.
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~ 80 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL-------ENGVLQIRYAKLGDTGRYTCI 80 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE-------ETTEEEEESCCGGGCCCEEEE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc-------cCCEEEEccCCcCCCEEEEEE
Confidence 34443 3446678899999999999999999999999998886555566555 356899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcceecC
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
|.|..|. ....+.|.|.+.+.+
T Consensus 81 a~n~~g~----~~~~~~l~V~~~~~p 102 (118)
T 2eo9_A 81 ASTPSGE----ATWSAYIEVQEFGVP 102 (118)
T ss_dssp EECSSCE----EEEECCEEEECCSCC
T ss_pred EEcCCCc----EEEEEEEEEEeCCCC
Confidence 9999965 777788888777554
No 390
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.58 E-value=1e-13 Score=107.82 Aligned_cols=166 Identities=12% Similarity=0.029 Sum_probs=107.9
Q ss_pred ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEee
Q psy15235 23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSL 98 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~ 98 (323)
+.+..+..+.+.+|+.+.|.|. +.|.+.+.|+++|..+..... ..+..........|.|.++.. .|.|+|.+.
T Consensus 20 P~~~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 20 PKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY---SNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSS---CSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred CcccCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCC---ccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 3444556678999999999999 457789999999988766411 112223334456677777654 999999999
Q ss_pred ccCCccceeeeeee--C---Cc-eeEEecCCcEEEEEEeec---CCCCCCceEEEEECCeeccccccccCcEE----ece
Q psy15235 99 FIPRMNAITGNYDI--E---PK-YKVFEYRVPFTLKCNVTS---PPPGDDYQIVWYKGNKSITEATELSGRLT----QSK 165 (323)
Q Consensus 99 ~~~~~~~~~~~~~~--~---~~-~~~~~~g~~v~l~C~~~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~ 165 (323)
+..+.......+.+ . |. ......+..+.|.|.... ..|.....+.|.+++..... ..... ...
T Consensus 97 n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~----~~~~~~~~~~~~ 172 (215)
T 3mtr_A 97 NRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH----SKWYDAKEASME 172 (215)
T ss_dssp CSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE----EEEEEHHHHHHH
T ss_pred ECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc----cccccccccccc
Confidence 98877654444444 1 11 122345778899997433 22210125788887654322 11111 223
Q ss_pred eEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196 (323)
Q Consensus 166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 196 (323)
..+.|.++...+.|.|+|.| .|..|....+
T Consensus 173 ~~l~i~~L~~~~~y~~~~~A-~N~~G~s~~S 202 (215)
T 3mtr_A 173 GIVTIVGLKPETTYAVRLAA-LNGKGLGEIS 202 (215)
T ss_dssp TEEEEECCCTTCEEEEEEEE-EESSCBCCCC
T ss_pred ccEEECCCCCCCEEEEEEEE-EeCCcccCcc
Confidence 78999999999999999999 7876554433
No 391
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-15 Score=101.83 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=77.1
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++.+.... + ....|.|.+++.+|+|.|+|.
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-~--~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL-D--GTCSLHTTASTLDDDGNYTIM 84 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECT-T--CEEEEEESSCCTTTCSCCEEE
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECC-C--cEEEEEECCCChhhCEEEEEE
Confidence 34333 3445678899999999999999999999999999887655566554211 1 235899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcceecCc
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
|.|..|. ....+.|.|.+.+...
T Consensus 85 a~N~~g~----~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 85 AANPQGR----ISCTGRLMVQAVNSGP 107 (110)
T ss_dssp EECTTCC----EEECCCEEEECCSCCS
T ss_pred EEECCCe----EEEEEEEEEECCCCCC
Confidence 9999966 7777888887776553
No 392
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.58 E-value=1.6e-16 Score=112.14 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=85.6
Q ss_pred ceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeec
Q psy15235 196 LAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEA 273 (323)
Q Consensus 196 ~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v 273 (323)
...+.|.|..+|.+..+....+.+|+.+.|.|.+.|.|.|. +.|++++..+... ..++.+..........++|.|.++
T Consensus 4 ~~~~~l~V~~~P~i~~~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v 83 (122)
T 2cry_A 4 GSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83 (122)
T ss_dssp SCCCCCCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred ceEEEEEEecCCCccCCCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence 45667788888877766677789999999999999999997 9999999887642 345544211111112568999999
Q ss_pred CcCCC-eEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 274 TMADR-GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 274 ~~~d~-G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
+.+|. |.|+|.|.|..|. ....+.|.|.+.+..
T Consensus 84 ~~~D~~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~ 117 (122)
T 2cry_A 84 VRADFQTIYNCTAWNSFGS----DTEIIRLKEQGSEMS 117 (122)
T ss_dssp CHHHHHSCEEEEEECSSCE----EEEEECCCCSCSSCC
T ss_pred ChhhCCceEEEEEECCCCe----EEEEEEEEECCCCCC
Confidence 99999 9999999999966 778888888875443
No 393
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.57 E-value=2e-14 Score=100.05 Aligned_cols=89 Identities=17% Similarity=0.299 Sum_probs=69.7
Q ss_pred eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee-eeecC-CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEH-PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296 (323)
Q Consensus 219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 296 (323)
.+..+.|.|.+.|+|.|.++|++||..+..+.... ..... .........|.|.++...|+|.|+|.|.|.+|. .
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~----~ 89 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ----A 89 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE----E
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe----E
Confidence 57789999999999999999999999987544322 11210 011123578999999999999999999999976 8
Q ss_pred eeEEEEEEcceecCc
Q psy15235 297 EAFVYVRVKGKSFGY 311 (323)
Q Consensus 297 ~~~~~l~v~~~~~~~ 311 (323)
...+.|.|.+.|...
T Consensus 90 ~~t~~l~v~~~P~~~ 104 (126)
T 1he7_A 90 SASIMAAFMDNPFEF 104 (126)
T ss_dssp EEEEEECCCSCTTSC
T ss_pred EEEEEEEEEcCCCCC
Confidence 888899888887663
No 394
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.57 E-value=2.1e-14 Score=113.05 Aligned_cols=158 Identities=9% Similarity=0.131 Sum_probs=97.9
Q ss_pred eEEEeeceEEecCCcEEEEEEec---c-Cc-eEEEEEcCccc-eeeccCcceEEEeeeeCC----eEEEEEeecc--cCc
Q psy15235 24 KITYFGDTEIMEGAPINISCILT---I-FE-QVKWQLNGRNI-NQSSVDSGFAATANLTED----NFKYSIHEAI--LES 91 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~---~-~~-~v~W~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~l~i~~~~--~~G 91 (323)
.+..+....+.+|+.++|.|.+. | .+ .++|+++|..+ ... .. ... ...++ ...|.|.++. |+|
T Consensus 16 ~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~---~~-~~~-~~~~g~~~~~s~L~I~~~~~~D~g 90 (231)
T 2w59_A 16 YAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD---PM-VLQ-EHFNGTYSASSAVPVSTQDWLSGE 90 (231)
T ss_dssp EEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC---CC-EEE-ECTTSCEEEEEEEECCHHHHHTTC
T ss_pred EEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc---cc-cce-ECCCCcEEEEEEEEecchhccCCC
Confidence 33445556678999999999943 4 24 99999999877 221 01 000 01112 2356666654 489
Q ss_pred ceEEEeeccCCccceeeeeee------CCceeEEe------cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--
Q psy15235 92 GYVQSSLFIPRMNAITGNYDI------EPKYKVFE------YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-- 157 (323)
Q Consensus 92 ~Y~C~~~~~~~~~~~~~~~~~------~~~~~~~~------~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-- 157 (323)
.|+|.+.+......+...+.. .|.+.+.. .+..++|.|.+.+.+|. .+.|.|++||..+......
T Consensus 91 ~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~ 169 (231)
T 2w59_A 91 RFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPR-DIEIRWLRDHRAVPATEFVTT 169 (231)
T ss_dssp CEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECCGGGCEEC
T ss_pred EEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCC-CcEEEEEECCEECCCcccccC
Confidence 999999987654332222221 22222221 24579999999986542 3799999999988652100
Q ss_pred --------------c-CcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 158 --------------S-GRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 158 --------------~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+ +.+ .....|.|.....+|.|.|+|.| .|.
T Consensus 170 ~~~~~~~~~~~~~~d~gt~-~~~s~L~i~~~~~~~~g~YtC~v-~n~ 214 (231)
T 2w59_A 170 AVLPEERTANGAGGDGDTF-FVYSKMSVETAKWNGGTVFACMA-VHE 214 (231)
T ss_dssp CCEECCTTSCC---CCCCE-EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred ccccCcccccccCCCCCeE-EEEEEEEEeHHHcCCCCcEEEEE-EcC
Confidence 0 111 12245777777777899999999 676
No 395
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.57 E-value=3.8e-14 Score=113.25 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=99.0
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+..+.+.+|++|+|.|.+.+ ...+.|+|.. ...... ....+..+..+...+.+.|
T Consensus 2 v~v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (253)
T 3liz_H 2 VQLVESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFL 81 (253)
T ss_dssp CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEE
T ss_pred ceEEcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 3466677889999999999999643 4689999943 211110 0112333333333567778
Q ss_pred EEeeccc--CcceEEEeeccC----Cc--cceeeeee----eCCcee------EEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235 83 SIHEAIL--ESGYVQSSLFIP----RM--NAITGNYD----IEPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVW 144 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~----~~--~~~~~~~~----~~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W 144 (323)
.|.+++. +|.|+|.+.+.. .. ......+. ..|.+. .+..|+.++|.|.+.+..|. ...+.|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W 160 (253)
T 3liz_H 82 QMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE-PVTVTW 160 (253)
T ss_dssp EECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSS-CCEEEE
T ss_pred EECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCC-CeEEEE
Confidence 8887754 999999997652 11 11111111 122221 13469999999999984431 249999
Q ss_pred EECCeecccc----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 145 YKGNKSITEA----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 145 ~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++++..+... ....+.+ .....|.|.....+| |.|+|.+ .|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v-~~~ 206 (253)
T 3liz_H 161 NSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHP 206 (253)
T ss_dssp GGGTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEE-EEG
T ss_pred EeCCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEE-EEC
Confidence 9988743210 0001222 233678898888888 9999999 666
No 396
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.57 E-value=2.2e-13 Score=101.84 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--CeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+.|+...+..|+++.|.|.+.... +..+.|.-. +..+.. .. .....|.|.+++. | |.|.|.+ ..
T Consensus 3 ~v~P~~~~V~~G~Sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~-----~~--~~~~~l~l~~vs~-~-g~y~C~~-~c 69 (185)
T 1iam_A 3 SVSPSKVILPRGGSVLVTCSTSCDQ---PKLLGIETPLPKKELLL-----PG--NNRKVYELSNVQE-D-SQPMCYS-NC 69 (185)
T ss_dssp EEESSEEEEETTEEEEEEEEECSSS---CSEEEEECSSCEEEECS-----SS--SSEEEEEEEEECS-C-BCCEEEE-EC
T ss_pred EEECCCcEEeCCCCEEEEEEccCCC---CccceEEeeCCCccEec-----cC--CceeEEEEEecCc-C-CEEEEEE-EC
Confidence 3456667789999999999997544 234777531 111101 00 2235688999973 3 9999999 54
Q ss_pred CCCCCCCceeeeeEEEeccee-eeec-eeEEeeCCeEEEEEEEecC-CCC--cEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 189 KSTNTTPLAQADFDVIMKPTA-KLVE-TLTVIEGEKLRLECLVVGS-PPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~~-~~~~-~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
. .......+.|+|..+|.. .+.. ...+.+|+.++|.|.+.|. |.. .+.|++++..+.... . . . ..
T Consensus 70 ~--~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~---~-~--~--~~ 139 (185)
T 1iam_A 70 P--DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---A-V--G--EP 139 (185)
T ss_dssp S--SCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---C-C--T--TT
T ss_pred C--CCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc---C-C--C--cc
Confidence 4 235777888888877633 3322 3458899999999999875 543 489999999886432 0 0 0 01
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+|++.....+|...|+|.|.|..+.
T Consensus 140 ~~~tl~~~~~reD~g~~~sC~A~~~l~~ 167 (185)
T 1iam_A 140 AEVTTTVLVRRDHHGAQFSCRTELDLRP 167 (185)
T ss_dssp EEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred ccEEEEEeceeccCCCeEEEEEEecCcc
Confidence 2456776655555555999999999874
No 397
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.57 E-value=2.1e-14 Score=98.29 Aligned_cols=92 Identities=25% Similarity=0.374 Sum_probs=72.7
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
..|.+...+....+.+|+++.|.|.+.|.| .+.|+|+++|..+.. +.++. .....|.|.+++.+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEP---PPVVVWEKGGQQLAA----SERLSFPADGAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEECCEETTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEec---CCEEEEEECcccccc----eeeEEEeecCceEEEEEecCChhhCEEE
Confidence 356666677777888999999999999988 789999999999977 55554 4556899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
+|.| .|..+ .....+.|.|..+|
T Consensus 85 ~C~a-~N~~G--~~~~~~~l~V~~pP 107 (107)
T 3knb_B 85 VCRA-RNAAG--EAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEE-EETTE--EEEEEEEEEEEC--
T ss_pred EEEE-EECCC--EEEEEEEEEEEcCC
Confidence 9999 77743 34556677776654
No 398
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=4.7e-15 Score=106.26 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=68.2
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECC----------------------------eeeeccCCeeeeecCCCCCC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN----------------------------DTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 263 (323)
+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+.....++.+.. . .
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~--~--~ 100 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET--T--K 100 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEE--E--T
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEe--C--C
Confidence 45678899999999999999999999999998 33322333443331 0 1
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
..+.|+|.++..+|+|.|+|.|.|..|. ....+.|.|.+
T Consensus 101 ~~s~L~I~~v~~~DsG~Y~C~A~N~~G~----~~~~~~L~V~d 139 (139)
T 1gxe_A 101 DRSIFTVEGAEKEDEGVYTVTVKNPVGE----DQVNLTVKVID 139 (139)
T ss_dssp TEEEEECSCCCTTTCEEEEEEEECSSCE----EEEEEEEEECC
T ss_pred CEEEEEECCCCcccCEEEEEEEEeCCce----EEEEEEEEEEC
Confidence 2467999999999999999999999965 88888888753
No 399
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.57 E-value=2.3e-14 Score=98.46 Aligned_cols=94 Identities=29% Similarity=0.497 Sum_probs=72.9
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. . .....|.|.+++.+|+|.|+|.
T Consensus 13 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~--~--~~~~~L~i~~~~~~D~G~Y~C~ 87 (107)
T 3irg_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-ERLSFPA--D--GAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEECCE--E--TTEEEEEESSCCGGGCEEEEEE
T ss_pred CCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCC-CcEEEEe--C--CCEEEEEEccCCHHhCEEEEEE
Confidence 45444 444677889999999999999999999999999887643 4444331 0 1244899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEccee
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
|.|..|. ....+.|.|.++|
T Consensus 88 a~n~~g~----~~~~~~l~V~~~P 107 (107)
T 3irg_B 88 ARNAAGE----AYAAAAVTVLEPP 107 (107)
T ss_dssp EEETTEE----EEEEEEEEEEC--
T ss_pred EEcCCCc----EEEEEEEEEEcCC
Confidence 9999966 7788888888764
No 400
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.56 E-value=2e-13 Score=109.10 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=92.5
Q ss_pred EeeceEEecCCcEEEEEEe--ccCceEEEEEc--Ccccee--eccC---------cceEEEeeeeCCe-EEEEEeecccC
Q psy15235 27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLN--GRNINQ--SSVD---------SGFAATANLTEDN-FKYSIHEAILE 90 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~--g~~~~~--~~~~---------~~~~~~~~~~~~~-~~l~i~~~~~~ 90 (323)
.+..+.+.+|++|+|.|.. .+.+.+.|+|. +..... .... .+..+........ +.|.-....|+
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds 86 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG 86 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC
T ss_pred CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC
Confidence 4566889999999999983 35678999983 221111 0000 0001112221111 44555555669
Q ss_pred cceEEEeeccCC---cc-------ceeeeee----eCCceeEEe-------cCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235 91 SGYVQSSLFIPR---MN-------AITGNYD----IEPKYKVFE-------YRVPFTLKCNVTSPPPGDDYQIVWYKGNK 149 (323)
Q Consensus 91 G~Y~C~~~~~~~---~~-------~~~~~~~----~~~~~~~~~-------~g~~v~l~C~~~~~~~~~~~~i~W~~~~~ 149 (323)
|.|+|.+.+..+ .. .+.+... ..|.+.+.. .|+.++|.|.+.+..|. ...+.|+++|.
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~i~v~W~k~g~ 165 (253)
T 3to4_D 87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGK 165 (253)
T ss_dssp EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTE
T ss_pred eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECC-cEEEEEEECCE
Confidence 999999975432 10 1111110 133333322 36899999999985442 24899999998
Q ss_pred eccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235 150 SITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPK 189 (323)
Q Consensus 150 ~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~ 189 (323)
.+...... ++.+ .....|.|.....+| .|.|+|.+ .+.
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~~~~ytC~v-~h~ 216 (253)
T 3to4_D 166 EVHSGVSTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFY 216 (253)
T ss_dssp EECTTEEECSSCEESSTTCTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EEC
T ss_pred ECCCceecccccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEE-EeC
Confidence 87542111 1222 223467777776667 77999999 565
No 401
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.56 E-value=3.8e-14 Score=96.04 Aligned_cols=88 Identities=25% Similarity=0.448 Sum_probs=70.6
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ...++.+.. . ....+|.|.++..+|+|.|+|.|.|..
T Consensus 11 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 86 (100)
T 3irg_A 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--T--DDLTTLIIMDVQKQDGGLYTLSLGNEF 86 (100)
T ss_dssp CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE--C--SSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEe--c--CCEEEEEEeecCcccCEEEEEEEEeCC
Confidence 34456788999999999999999999999999988753 234555442 1 124889999999999999999999999
Q ss_pred cCCCCCceeEEEEEEcc
Q psy15235 290 TRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~~ 306 (323)
|. ....+.|.|.+
T Consensus 87 g~----~~~~~~l~V~~ 99 (100)
T 3irg_A 87 GS----DSATVNIHIRS 99 (100)
T ss_dssp EE----EEEEEEEEEEC
T ss_pred Cc----EEEEEEEEEEe
Confidence 66 77888887764
No 402
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.56 E-value=1e-13 Score=111.62 Aligned_cols=165 Identities=13% Similarity=0.193 Sum_probs=96.1
Q ss_pred ccCCceEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCC
Q psy15235 19 ISADGKITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTED 78 (323)
Q Consensus 19 ~~~~~~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~ 78 (323)
......+..+..+.+.+|++|+|.|... ....+.|+|.. ...... ....+.....+...+
T Consensus 21 ~~~~~~v~q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 100 (267)
T 3u1s_H 21 AHSQVQLVQSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGAS 100 (267)
T ss_dssp ---CCCEEECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGC
T ss_pred ccccceEEeeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCC
Confidence 3455567777778899999999999953 34689999842 221110 011222232333356
Q ss_pred eEEEEEeeccc--CcceEEEeec-------cC------------C-c-------cceeeeee--e--CCceeE------E
Q psy15235 79 NFKYSIHEAIL--ESGYVQSSLF-------IP------------R-M-------NAITGNYD--I--EPKYKV------F 119 (323)
Q Consensus 79 ~~~l~i~~~~~--~G~Y~C~~~~-------~~------------~-~-------~~~~~~~~--~--~~~~~~------~ 119 (323)
.+.|.|.+++. +|.|+|.+.+ .. . . ......+. . .|.+.. .
T Consensus 101 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~ 180 (267)
T 3u1s_H 101 TVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKS 180 (267)
T ss_dssp CEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGG
T ss_pred EEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCccc
Confidence 77788887754 9999999961 00 0 0 00111111 1 222221 1
Q ss_pred ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..|+.++|.|.+.+..|. ...+.| ++..+..... .++.+ .....|.|.....+| +.|+|.+ .+.
T Consensus 181 ~~g~~~~l~C~~~~~~p~-~~~v~W--~~~~~~~~~~~~~~~~~~~g~y-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 251 (267)
T 3u1s_H 181 TSGGTAALGCLVKDYFPE-PVTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 251 (267)
T ss_dssp EETTEEEEEEEEEEEBSS-CCEEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGGGT-CCCEEEE-EEG
T ss_pred CCCCcEEEEEEEeEEECC-CeEEEE--CCcccCCCEEeCCceECCCCCE-EEEEEEEECchhcCC-CEEEEEE-EEC
Confidence 368899999999886543 468999 5544422100 11222 233568888887778 9999999 665
No 403
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.55 E-value=3.6e-14 Score=104.28 Aligned_cols=105 Identities=22% Similarity=0.329 Sum_probs=78.1
Q ss_pred eeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235 200 DFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278 (323)
Q Consensus 200 ~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 278 (323)
.+.+..+|.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+... .++.+.... . ....|.|.++..+|+
T Consensus 35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~-~--~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDE-E--GNCSLTISEVCGDDD 110 (154)
T ss_dssp CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECT-T--CEEEEEESSCCGGGC
T ss_pred cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC-CcEEEEECC-C--CeEEEEECCCChhcC
Confidence 34445566655 344677899999999999999999999999999888643 444433111 1 247899999999999
Q ss_pred eEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235 279 GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 279 G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~ 312 (323)
|.|+|.|.|..|. ....+.|.|...|....
T Consensus 111 G~Y~C~a~N~~G~----~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 111 AKYTCKAVNSLGE----ATCTAELLVETMGKEGE 140 (154)
T ss_dssp EEEEEEEEETTEE----EEEEEEEEEECC-----
T ss_pred EEEEEEEEECCCe----EEEEEEEEEeCcCcCCC
Confidence 9999999999966 77888888887776554
No 404
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.55 E-value=1.7e-13 Score=106.60 Aligned_cols=160 Identities=11% Similarity=0.141 Sum_probs=92.5
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee--e-----------ccCcceEEEeeeeCCeEEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ--S-----------SVDSGFAATANLTEDNFKYSI 84 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~--~-----------~~~~~~~~~~~~~~~~~~l~i 84 (323)
.+..+.++.+.+|++|+|.|.+.+ .+.+.|+|+. ..+.. . ....+..+..+...+.+.|.|
T Consensus 3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (215)
T 1c5d_H 3 KLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM 82 (215)
T ss_dssp CEEEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEE
T ss_pred eEEcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEE
Confidence 456677889999999999999543 4789999953 22210 0 011222222222345677888
Q ss_pred eeccc--CcceEEEeeccCCc-----cceeeeeee----CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235 85 HEAIL--ESGYVQSSLFIPRM-----NAITGNYDI----EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYK 146 (323)
Q Consensus 85 ~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~~~----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~ 146 (323)
.+++. +|.|+|.+.+..+. ......+.. .|.+.. +..|+.++|.|.+.+..| .+ .|.|++
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~ 160 (215)
T 1c5d_H 83 NSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFP--EPVTVTWNS 160 (215)
T ss_dssp SSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBS--SCCEEEEGG
T ss_pred CCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEc--CCcEEEEcc
Confidence 87764 99999999875311 111111110 122222 246899999999998733 45 999999
Q ss_pred CCeeccccccccCcEE-eceeEE--EEeeeecCCCeeEEEEEEcCC
Q psy15235 147 GNKSITEATELSGRLT-QSKDSI--TIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~-~~~~~l--~i~~~~~~d~G~y~C~~~~~~ 189 (323)
++..+... ...... .....+ .+.....+| |.|+|.+ .|.
T Consensus 161 ~g~~~~~~--~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v-~n~ 202 (215)
T 1c5d_H 161 GALSSDVH--TFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNV-AHP 202 (215)
T ss_dssp GTTCCSCC--BCCCEEETTEEEEEEEEEESSTTT-SCCEEEE-EEG
T ss_pred CCccCceE--ecCcccCCCCEEEEEEEecccCCC-CeEEEEE-EeC
Confidence 88654320 011111 111111 122333345 9999999 666
No 405
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.55 E-value=5.3e-14 Score=95.11 Aligned_cols=92 Identities=26% Similarity=0.404 Sum_probs=71.7
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. .. ....|.|.++..+|+|.|+|.
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~--~~--~~~~L~i~~~~~~d~G~Y~C~ 80 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-GKYKLSE--DK--GGFFLEIHKTDTSDSGLYTCT 80 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS-SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC-CCEEEEE--eC--CEEEEEECCCCcccCEEEEEE
Confidence 34443 344667889999999999999999999999999887643 4444441 11 245899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcc
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
|.|..|. ....+.|.|.+
T Consensus 81 a~n~~g~----~~~~~~l~V~~ 98 (99)
T 3puc_A 81 VKNSAGS----VSSSCKLTIKA 98 (99)
T ss_dssp EEETTEE----EEEEEEEEEEC
T ss_pred EEeCCCc----EeEEEEEEEEe
Confidence 9999966 77777877754
No 406
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=101.68 Aligned_cols=98 Identities=29% Similarity=0.412 Sum_probs=75.9
Q ss_pred cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......... ... ...+|.|.+++.+|+|.|+|.
T Consensus 9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~--~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm3_A 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV--REN--GVHSLIIEPVTSRDAGIYTCI 84 (110)
T ss_dssp CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE--CTT--SCEEEEESSCCGGGCSBBCEE
T ss_pred CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE--ecC--CeEEEEEeeCCcccCEEEEEE
Confidence 34333 3446778899999999999999999999999998876544433322 111 246899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcceecCc
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
|.|..|. ....+.|.|.++|.+.
T Consensus 85 a~n~~g~----~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 85 ATNRAGQ----NSFSLELVVAAKESGP 107 (110)
T ss_dssp EECSSCE----EEECCEEEEECCCCSS
T ss_pred EECCCCE----EEEEEEEEEeCCCCCC
Confidence 9999965 7788888888877653
No 407
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.55 E-value=3.8e-13 Score=105.75 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=99.6
Q ss_pred EeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccce---eec----------cCcceEEEeeeeCCeEEEEEeec
Q psy15235 27 YFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNIN---QSS----------VDSGFAATANLTEDNFKYSIHEA 87 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~---~~~----------~~~~~~~~~~~~~~~~~l~i~~~ 87 (323)
.+..+.+.+|++|+|.|.+. +...+.|+|.. +.+. ... ...+..+..+...+.+.|.|.++
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (230)
T 1ypz_F 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (230)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence 35678899999999999954 34689999953 2221 100 11111111122236678888877
Q ss_pred c--cCcceEEEeecc--CCc----cceeeeee---------eCCceeEE-------ecCCcEEEEEEeecCCCCCCceEE
Q psy15235 88 I--LESGYVQSSLFI--PRM----NAITGNYD---------IEPKYKVF-------EYRVPFTLKCNVTSPPPGDDYQIV 143 (323)
Q Consensus 88 ~--~~G~Y~C~~~~~--~~~----~~~~~~~~---------~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~~i~ 143 (323)
+ |+|.|+|.+.+. ... ......+. ..|...+. ..|+.++|.|.+.+..|. .+.|.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~-~~~v~ 165 (230)
T 1ypz_F 87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPD-VIRVY 165 (230)
T ss_dssp CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSC-CCEEE
T ss_pred ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCC-CeEEE
Confidence 6 499999999864 110 11111111 11332332 247899999999987442 36999
Q ss_pred EEE-CCeecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 144 WYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 144 W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
|++ +|..+..... .++.+ .....|.|..... + |.|+|.+ .+.... ..+...+..+|
T Consensus 166 W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~-~-~~ytC~v-~~~~~~----~~~~~~~~fp~ 227 (230)
T 1ypz_F 166 WKEKDGNTILDSQEGDTLKTNDTY-MKFSWLTVPERAM-G-KEHRCIV-KHENNK----GGADQAIFFPS 227 (230)
T ss_dssp EECTTSSCBCCCEECCCEEETTEE-EEEEEEEECGGGT-T-SCEEEEE-ECSSCT----TTSCEEEEECC
T ss_pred EEccCCeEccccccceeecCCCCE-EEEEEEEEEhhhC-C-CEEEEEE-EECCCC----CceeEeeecCC
Confidence 999 8776643111 01111 2234677777664 4 8999999 666322 23444555544
No 408
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.55 E-value=1.8e-14 Score=100.90 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=75.0
Q ss_pred eeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235 200 DFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279 (323)
Q Consensus 200 ~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 279 (323)
.|.|..+|.+....... ..+...|.|.+.|+|.|.+.|+++|..+.... +.............+.|.|.++..+|+|
T Consensus 2 ~L~V~~pP~i~~~~~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G 78 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK-IIHVEYYQEGEISEGCLLFNKPTHYNNG 78 (118)
T ss_dssp --CCCCCCCCCCCCCCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSS-SEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred EEEEecCCceeccCCCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCC-ceeEEEeccCccccEEEEECCCChhcCE
Confidence 45566677655332222 23667899999999999999999999886543 2222110111123578999999999999
Q ss_pred EEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 280 NYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 280 ~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
.|+|.|.|..|. ....+.|.|.++|..+
T Consensus 79 ~Y~C~a~N~~G~----~~~~~~l~v~~~P~~v 106 (118)
T 1wwc_A 79 NYTLIAKNPLGT----ANQTINGHFLKEPFPV 106 (118)
T ss_dssp EEEEEEEETTEE----EEEEEEECCSCCCCCS
T ss_pred EEEEEEECCCCe----EeeEEEEEEccCCCch
Confidence 999999999966 8889999888887654
No 409
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.55 E-value=8e-14 Score=93.85 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=70.3
Q ss_pred eeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+..+.+|+.+.|.|.+.|. |.+.+.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|.|.|..
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEITY--ED--GVAILYVKDITKLDDGTYRCKVVNDY 81 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS-SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC-CCEEEEE--cC--CeEEEEEecCChhhCeEEEEEEECCC
Confidence 3446778899999999999997 88999999999887643 4444431 01 24589999999999999999999999
Q ss_pred cCCCCCceeEEEEEEcce
Q psy15235 290 TRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~~~ 307 (323)
|. ....+.|.|.+.
T Consensus 82 g~----~~~~~~l~V~~~ 95 (97)
T 2bk8_A 82 GE----DSSYAELFVKGV 95 (97)
T ss_dssp CE----EEEEEEEEETTT
T ss_pred Ce----EeEEEEEEEEec
Confidence 65 778888888753
No 410
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.54 E-value=1e-13 Score=109.26 Aligned_cols=163 Identities=11% Similarity=0.181 Sum_probs=95.6
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceE--EEEEcC--ccceee----------------ccCcceEEEeeeeCC
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQV--KWQLNG--RNINQS----------------SVDSGFAATANLTED 78 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v--~W~~~g--~~~~~~----------------~~~~~~~~~~~~~~~ 78 (323)
..+..+.++.+.+|++|+|.|...+ ...+ .|+|.. ...... ....+..+..+...+
T Consensus 2 v~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 81 (232)
T 3qhz_H 2 VNLRESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKS 81 (232)
T ss_dssp CEEEEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTT
T ss_pred CeEEcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCC
Confidence 3566777788999999999999643 2345 999842 211100 011222232233356
Q ss_pred eEEEEEeeccc--CcceEEEeeccC--------Cc--cceeeeee--e--CCcee------EEecCCcEEEEEEeecCCC
Q psy15235 79 NFKYSIHEAIL--ESGYVQSSLFIP--------RM--NAITGNYD--I--EPKYK------VFEYRVPFTLKCNVTSPPP 136 (323)
Q Consensus 79 ~~~l~i~~~~~--~G~Y~C~~~~~~--------~~--~~~~~~~~--~--~~~~~------~~~~g~~v~l~C~~~~~~~ 136 (323)
.+.|.|.+++. +|.|+|.+.+.. .. ......+. . .|.+. .+..|+.++|.|.+.+.+|
T Consensus 82 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P 161 (232)
T 3qhz_H 82 QVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 161 (232)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBS
T ss_pred EEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeC
Confidence 77888887764 999999997542 00 11111111 0 12221 2345899999999988654
Q ss_pred CCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 137 GDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 137 ~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
. ...+.|++++..+... ...++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus 162 ~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~ytC~v-~~~ 215 (232)
T 3qhz_H 162 E-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 215 (232)
T ss_dssp S-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGGGT-CCCEEEE-EEG
T ss_pred C-CeEEEEEECCEecceeeccceeCCCCCE-EEEEEEEEchhhcCC-CEEEEEE-EeC
Confidence 3 4578999988644220 0011222 233568888888888 9999999 665
No 411
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.54 E-value=3e-14 Score=113.79 Aligned_cols=162 Identities=14% Similarity=0.230 Sum_probs=86.5
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l 82 (323)
..+.++.++.+.+|++|+|.|.+.+ .+.+.|+|.. +.+.. . ....+..+..+...+.+.|
T Consensus 2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (257)
T 3bn9_D 2 VQLVQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYL 81 (257)
T ss_dssp CEEEEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred CeEEccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEE
Confidence 3566777889999999999999542 4689999953 22211 0 0112222222222456778
Q ss_pred EEeecc--cCcceEEEeeccCCc---------c--c--eeeeeee------CCce------eEEecCCcEEEEEEeecCC
Q psy15235 83 SIHEAI--LESGYVQSSLFIPRM---------N--A--ITGNYDI------EPKY------KVFEYRVPFTLKCNVTSPP 135 (323)
Q Consensus 83 ~i~~~~--~~G~Y~C~~~~~~~~---------~--~--~~~~~~~------~~~~------~~~~~g~~v~l~C~~~~~~ 135 (323)
.|.+++ |+|.|+|.+.+..+. . . ....+.+ .|.+ ..+..|+.++|.|.+.+..
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~ 161 (257)
T 3bn9_D 82 QMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 161 (257)
T ss_dssp EEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEB
T ss_pred EECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEE
Confidence 887765 499999999875430 0 0 0011111 1111 1234689999999999864
Q ss_pred CCCCc-eEEEEECCeeccccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 136 PGDDY-QIVWYKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 136 ~~~~~-~i~W~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
| .+ .|.|++++..+.... ..++.+ .....|.|.+...+| |.|+|.+ .|.
T Consensus 162 P--~pi~v~W~k~g~~~~~~~~~~~~~~~g~y-~~~s~L~I~~~~~~~-g~YtC~v-~n~ 216 (257)
T 3bn9_D 162 P--EPVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 216 (257)
T ss_dssp S--SCCEEEETTTTCCSSCEECCCEECTTSCE-EEEEECCCC--------CEEEEE-EEG
T ss_pred C--CCcEEEEeeCCCcCCcEecCCeEcCCCCE-EEEEEEEEcccccCC-CeEEEEE-Eec
Confidence 3 44 999999987642200 011222 223467787777777 9999999 665
No 412
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.54 E-value=1.3e-13 Score=110.47 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--ccceee---c-----------cCcceEEEeeeeCCeE
Q psy15235 21 ADGKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQS---S-----------VDSGFAATANLTEDNF 80 (323)
Q Consensus 21 ~~~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~~---~-----------~~~~~~~~~~~~~~~~ 80 (323)
....+..+.++.+.+|++|+|.|.+. + .+.+.|+|+. ..+... . ...+..+..+...+..
T Consensus 6 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (261)
T 2xqy_G 6 DQVQLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTV 85 (261)
T ss_dssp -CCEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred CceeEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEE
Confidence 45566667788899999999999954 2 4789999963 322110 0 1122222222234567
Q ss_pred EEEEeeccc--CcceEEEeeccCCcc-c--eeeeeee------CCcee------EEecCCcEEEEEEeecCCCCCCceEE
Q psy15235 81 KYSIHEAIL--ESGYVQSSLFIPRMN-A--ITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIV 143 (323)
Q Consensus 81 ~l~i~~~~~--~G~Y~C~~~~~~~~~-~--~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~ 143 (323)
.|.|.+++. +|.|+|.+.+..... . ....+.+ .|.+. .+..|+.++|.|.+.+..|. ...|.
T Consensus 86 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~-~i~v~ 164 (261)
T 2xqy_G 86 YIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE-PVTLT 164 (261)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSS-CCEEE
T ss_pred EEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCC-CCEEE
Confidence 788887764 999999998753100 0 0011111 12111 13468999999999886431 24999
Q ss_pred EEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 144 WYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 144 W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|++++..+..... ..+.+ .....|.|.+...+| |.|+|.+ .+.
T Consensus 165 W~k~g~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~YtC~v-~n~ 211 (261)
T 2xqy_G 165 WNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHP 211 (261)
T ss_dssp EGGGTCCTTEEECCCEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEG
T ss_pred EecCCCcCceEecCceecCCcE-EEEEEEEEeccccCC-CEEEEEE-EEC
Confidence 9999876532000 01122 234578888887777 9999999 665
No 413
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.53 E-value=1.2e-13 Score=109.33 Aligned_cols=163 Identities=13% Similarity=0.175 Sum_probs=97.4
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc------CceEEEEEcC--cccee----e---------------ccCcceEEEeee
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI------FEQVKWQLNG--RNINQ----S---------------SVDSGFAATANL 75 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g--~~~~~----~---------------~~~~~~~~~~~~ 75 (323)
..+..+.++.+.+|++|+|.|...+ ...+.|+|.. ..... . ....+..+..+.
T Consensus 2 v~l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 81 (239)
T 3tv3_H 2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT 81 (239)
T ss_dssp CEEEEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG
T ss_pred ceEecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC
Confidence 3566778889999999999999543 3489999942 22111 0 011222222233
Q ss_pred eCCeEEEEEeeccc--CcceEEEeeccCC----------------c-cceeeeeee--CCcee------EEecCCcEEEE
Q psy15235 76 TEDNFKYSIHEAIL--ESGYVQSSLFIPR----------------M-NAITGNYDI--EPKYK------VFEYRVPFTLK 128 (323)
Q Consensus 76 ~~~~~~l~i~~~~~--~G~Y~C~~~~~~~----------------~-~~~~~~~~~--~~~~~------~~~~g~~v~l~ 128 (323)
....+.|.|.+++. +|.|+|.+.+..+ . ..+.+.... .|.+. .+..|+.++|.
T Consensus 82 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~ 161 (239)
T 3tv3_H 82 PKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALG 161 (239)
T ss_dssp GGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEE
T ss_pred CCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEE
Confidence 35677788888764 9999999975421 0 011111000 22222 13458999999
Q ss_pred EEeecCCCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 129 CNVTSPPPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 129 C~~~~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
|.+.+..|. ...+.|++++..+... ...++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus 162 C~~~~~~p~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 223 (239)
T 3tv3_H 162 CLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 223 (239)
T ss_dssp EEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred EEEeeEeCC-CeEEEEEECCccCceEecCceECCCCCE-EEEEEEEEchhhcCC-CEEEEEE-EEC
Confidence 999885542 3578999988644220 0011222 233568888887788 9999999 665
No 414
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=91.45 Aligned_cols=79 Identities=25% Similarity=0.488 Sum_probs=61.1
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 293 (323)
+..+.+|+.+.|.|.+.+ |.|.+.|++||..+..+ .++.+.. .+ ....|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n------ 72 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ-GRVQLEQ--AG--ARQVLRVQGARSGDAGEYLCDAPQ------ 72 (84)
T ss_dssp CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC-SSEEEEE--CS--SCEEEEESSCSSTTCEEEEEECTT------
T ss_pred EEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc-ccEEEee--cC--CeEEEEecCCCCcccEEEEEEECC------
Confidence 456789999999999965 88999999999998754 4444442 11 356899999999999999999854
Q ss_pred CCceeEEEEEEcc
Q psy15235 294 QPNEAFVYVRVKG 306 (323)
Q Consensus 294 ~~~~~~~~l~v~~ 306 (323)
....+.|.|.+
T Consensus 73 --~~~~a~l~V~e 83 (84)
T 2lu7_A 73 --DSRIFLVSVEE 83 (84)
T ss_dssp --TCEEEEEEECC
T ss_pred --EEEEEEEEEEC
Confidence 34566676654
No 415
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.52 E-value=9.1e-13 Score=104.47 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=94.3
Q ss_pred EeeceEEecCCcEEEEEEec----cCceEEEEEcC--cccee---ec-----------cCcceEEEeeeeCCeEEEEEee
Q psy15235 27 YFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQ---SS-----------VDSGFAATANLTEDNFKYSIHE 86 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~ 86 (323)
.+..+.+.+|++|+|.|.+. +...+.|+|+. ..+.. .. ...+..+..+...+...|.|.+
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence 35678899999999999954 34789999953 22211 00 1111112112222567788887
Q ss_pred cc--cCcceEEEeeccCC-c--------cceeeeeeeC-------CceeE-------EecCCcEEEEEEeecCCCCCCce
Q psy15235 87 AI--LESGYVQSSLFIPR-M--------NAITGNYDIE-------PKYKV-------FEYRVPFTLKCNVTSPPPGDDYQ 141 (323)
Q Consensus 87 ~~--~~G~Y~C~~~~~~~-~--------~~~~~~~~~~-------~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~ 141 (323)
++ |+|.|+|.+.+... . ......+... |...+ +..|+.++|.|.+.+..|. .+.
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~-~~~ 165 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD-VIK 165 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC-CEE
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC-CeE
Confidence 65 49999999987531 0 1111111111 11111 2358999999999987542 379
Q ss_pred EEEEECCe-ecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235 142 IVWYKGNK-SITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191 (323)
Q Consensus 142 i~W~~~~~-~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 191 (323)
|.|++++. .+..... .++.+ .....|.|.+... + |.|+|.+ .|..+
T Consensus 166 v~W~~~~~~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~-~-g~y~C~v-~n~~~ 217 (242)
T 1hxm_B 166 IHWEEKKSNTILGSQEGNTMKTNDTY-MKFSWLTVPEKSL-D-KEHRCIV-RHENN 217 (242)
T ss_dssp EEEEESSSCCCCCCEECCCEECSSSE-EEEEEEEECTGGG-G-SCEEEEE-EETTS
T ss_pred EEEEcCCCEeecCccccceecCCCcE-EEEEEEEEccccC-C-CEEEEEE-EeCCC
Confidence 99999987 5532100 11122 2234677877654 4 9999999 67643
No 416
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.52 E-value=4.6e-13 Score=105.33 Aligned_cols=161 Identities=13% Similarity=0.192 Sum_probs=97.1
Q ss_pred ceEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+..+.+.+|++|+|.|... +...+.|+|.. ...... ....+..+..+...+.+.|
T Consensus 2 v~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (230)
T 3n9g_H 2 VQLVQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYM 81 (230)
T ss_dssp CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred cEEEecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEE
Confidence 345667778899999999999953 24689999842 211110 0112233333334567778
Q ss_pred EEeeccc--CcceEEEeeccCC-----c-----cceeeeee--e--CCceeE------EecCCcEEEEEEeecCCCCCCc
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPR-----M-----NAITGNYD--I--EPKYKV------FEYRVPFTLKCNVTSPPPGDDY 140 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~-----~-----~~~~~~~~--~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~ 140 (323)
.|.+++. +|.|+|.+.+... . ......+. . .|.+.. +..|+.++|.|.+.+.+|. ..
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~-~~ 160 (230)
T 3n9g_H 82 ELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PV 160 (230)
T ss_dssp EECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSS-CC
T ss_pred EECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECC-CE
Confidence 8887754 9999999976431 0 11111111 1 222211 3478999999999886543 46
Q ss_pred eEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 141 QIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 141 ~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.+.| ++..+..... .++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus 161 ~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 211 (230)
T 3n9g_H 161 TVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 211 (230)
T ss_dssp EEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEESTTBTT-BCCEEEE-EEG
T ss_pred EEEE--CCcccCCCeEeCCceECCCCCE-EEEEEEEECHHHcCC-CeEEEEE-EEC
Confidence 8999 5544432100 11222 233578888888888 9999999 665
No 417
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.52 E-value=4e-13 Score=106.29 Aligned_cols=161 Identities=16% Similarity=0.260 Sum_probs=93.4
Q ss_pred EEeeceEEecCCcEEEEEEec-cCceEEEEEcC--ccceee------------ccCcceEEEeeeeCCeEEEEEeecc--
Q psy15235 26 TYFGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNINQS------------SVDSGFAATANLTEDNFKYSIHEAI-- 88 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~-- 88 (323)
..+..+.+.+|++|+|.|.+. +.+.+.|+|++ ..+... ....+..+.. ...+...|.|.+++
T Consensus 4 q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~L~I~~v~~~ 82 (238)
T 1bec_A 4 QSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQEQFSLILELATPS 82 (238)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEEC-CSSSEEEEEESSCCGG
T ss_pred cCCCeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEe-cCCCEEEEEEecCCcc
Confidence 446778899999999999953 46789999964 221110 0111111111 12456778888776
Q ss_pred cCcceEEEeeccCC--------c-cceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235 89 LESGYVQSSLFIPR--------M-NAITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148 (323)
Q Consensus 89 ~~G~Y~C~~~~~~~--------~-~~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~ 148 (323)
|+|.|+|.+.+..+ . ..+.+... ..|.+.+ +..|+.++|.|.+.+..|. ...+.|+++|
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~~~g 161 (238)
T 1bec_A 83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD-HVELSWWVNG 161 (238)
T ss_dssp GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSC-CEEEEEEETT
T ss_pred cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCC-CcEEEEEECC
Confidence 49999999987531 1 11111110 0222222 2358999999999986431 3599999999
Q ss_pred eeccccccccCc-EEec------eeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235 149 KSITEATELSGR-LTQS------KDSITIRKTTVDD-AGQYSCRLIDPK 189 (323)
Q Consensus 149 ~~~~~~~~~~~~-~~~~------~~~l~i~~~~~~d-~G~y~C~~~~~~ 189 (323)
..+......... .... ...|.|......| .|.|+|.+ .|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v-~~~ 209 (238)
T 1bec_A 162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQV-QFH 209 (238)
T ss_dssp EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEE-EEC
T ss_pred EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEE-EcC
Confidence 887652111101 1111 1234444443333 67899999 665
No 418
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.51 E-value=5.5e-14 Score=94.23 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=66.1
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+....+.+|+.+.|.|.+.|.| +.+.|++++..+... .++.+. ...|.|.+++.+|+|.|+|.|.|..|
T Consensus 15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~n~~g 84 (95)
T 2ckn_A 15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES-NRTRIT--------GEEVEVRDSIPADSGLYACVTSSPSG 84 (95)
T ss_dssp BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC-SSEEEC--------SSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC-CCEEEe--------CCEEEECCCChHHCEEEEEEeccCCC
Confidence 34466788999999999999987 799999999887643 344443 57899999999999999999999996
Q ss_pred CCCCCceeEEEEEE
Q psy15235 291 RNSQPNEAFVYVRV 304 (323)
Q Consensus 291 ~~~~~~~~~~~l~v 304 (323)
. ....+.|.|
T Consensus 85 ~----~~~~~~l~V 94 (95)
T 2ckn_A 85 S----DTTYFSVNV 94 (95)
T ss_dssp E----EEEEEEEEE
T ss_pred c----EEEEEEEEE
Confidence 5 777777776
No 419
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.51 E-value=4e-13 Score=100.46 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=90.6
Q ss_pred eeceEEecCCcEEEEEEec-cCce-EEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc
Q psy15235 28 FGDTEIMEGAPINISCILT-IFEQ-VKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA 105 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~ 105 (323)
|....|.+|+++.|+|... +.+. +.|... +... .. .+...+...|.+.++++.|.|.|.+........
T Consensus 6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~~~------~~-~~~~~~~~~l~l~~vs~~g~y~C~~~c~~~~~~ 75 (185)
T 1iam_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LPKK------EL-LLPGNNRKVYELSNVQEDSQPMCYSNCPDGQST 75 (185)
T ss_dssp SSEEEEETTEEEEEEEEECSSSCSEEEEECS---SCEE------EE-CSSSSSEEEEEEEEECSCBCCEEEEECSSCEEE
T ss_pred CCCcEEeCCCCEEEEEEccCCCCccceEEee---CCCc------cE-eccCCceeEEEEEecCcCCEEEEEEECCCCceE
Confidence 4556799999999999954 4454 666531 1111 00 011123345677777777999999965543322
Q ss_pred eeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC
Q psy15235 106 ITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD 176 (323)
Q Consensus 106 ~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 176 (323)
....+.+ .+....+.+|+.++|.|.+.+..|.+...|+|||++..+.... ... ...+..+++.....+
T Consensus 76 ~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-~~~--~~~~~tl~~~~~reD 152 (185)
T 1iam_A 76 AKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-AVG--EPAEVTTTVLVRRDH 152 (185)
T ss_dssp EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-CCT--TTEEEEEEEECCSSC
T ss_pred EEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-CCC--ccccEEEEEeceecc
Confidence 2222222 2332336789999999999997764334699999998886411 000 022345666655555
Q ss_pred CCeeEEEEEEcCC
Q psy15235 177 DAGQYSCRLIDPK 189 (323)
Q Consensus 177 d~G~y~C~~~~~~ 189 (323)
|.+.|+|+| .+.
T Consensus 153 ~g~~~sC~A-~~~ 164 (185)
T 1iam_A 153 HGAQFSCRT-ELD 164 (185)
T ss_dssp SSCEEEEEE-EEE
T ss_pred CCCeEEEEE-Eec
Confidence 555999999 555
No 420
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.51 E-value=1.2e-13 Score=108.94 Aligned_cols=164 Identities=12% Similarity=0.150 Sum_probs=91.7
Q ss_pred ceEEEeeceE-EecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcce
Q psy15235 23 GKITYFGDTE-IMEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGY 93 (323)
Q Consensus 23 ~~i~~~~~~~-v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y 93 (323)
..+..+.+.. +..|+.++|.|.+.+ ...++|+++|.++...............-.....|.+.... +.|.|
T Consensus 25 v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~Y 104 (240)
T 4acp_A 25 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104 (240)
T ss_dssp EEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCE
T ss_pred EEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEE
Confidence 3334444454 557999999999543 23799999998875431000000000000111245554443 38999
Q ss_pred EEEeeccCCccceeeeee------eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-----
Q psy15235 94 VQSSLFIPRMNAITGNYD------IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE----- 156 (323)
Q Consensus 94 ~C~~~~~~~~~~~~~~~~------~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~----- 156 (323)
+|.+.+......+...+. ..|.+.+. ..|+.++|.|.+.+..|. ...+.|+++|..+.....
T Consensus 105 tC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~ 183 (240)
T 4acp_A 105 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS-DIAVEWESNGQPENNYKATPPVL 183 (240)
T ss_dssp EEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEE
T ss_pred EEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCC-CcEEEEEECCEECCCcCccCceE
Confidence 999998765322221111 13333332 137899999999996542 358999999987643110
Q ss_pred -ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 157 -LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 157 -~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.++.+ .....|.+......+.|.|+|.+ .+.
T Consensus 184 ~~dgt~-~~~s~L~v~~~~~~~~~~ytC~V-~h~ 215 (240)
T 4acp_A 184 DSDGSF-FLYSKLTVDKSRWQQGNVFSCSV-MHE 215 (240)
T ss_dssp CTTSCE-EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred CCCCCE-EEEEEEEEChHHhCCCCEEEEEE-EEC
Confidence 01111 22345556555556789999999 666
No 421
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.51 E-value=8.8e-13 Score=103.34 Aligned_cols=168 Identities=17% Similarity=0.263 Sum_probs=98.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc-----cccccCcEE------eceeEEEEeeeecC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE-----ATELSGRLT------QSKDSITIRKTTVD 176 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~-----~~~~~~~~~------~~~~~l~i~~~~~~ 176 (323)
.|....+.+|++++|.|.+.+.+.. ...+.|||.. .. +.. .....+|+. .....|.|.+++.+
T Consensus 7 ~p~~v~v~~G~~vtL~C~~s~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 85 (229)
T 1hxm_A 7 EHQTVPVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER 85 (229)
T ss_dssp SCSEEEEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred CCCEEEEcCCCCEEEEeEecCCccC-cceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHh
Confidence 4566678899999999999854311 3589999842 21 110 112245665 23458999999999
Q ss_pred CCeeEEEEEEcCCCC------CCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeec
Q psy15235 177 DAGQYSCRLIDPKST------NTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFR 248 (323)
Q Consensus 177 d~G~y~C~~~~~~~~------~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~ 248 (323)
|+|.|.|.+ .+... .........|.|........++...+.. ....|.|.+.|. |.+ .+.|+++ ..+..
T Consensus 86 Dsg~Y~C~~-~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~ 162 (229)
T 1hxm_A 86 DEGSYYCAC-DTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITE 162 (229)
T ss_dssp GCEEEEEEE-ECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEE
T ss_pred HCeEEEEEE-ecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEec
Confidence 999999999 54310 0011122356665411111111122212 235899999875 554 8999999 66643
Q ss_pred cCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235 249 SQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR 291 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~ 291 (323)
........ ...++.+.... .+|.|.|+|.+.|..+.
T Consensus 163 ~~~~~~~~-------~dg~y~~~~~~~~~~~~~ytC~V~h~~~~ 199 (229)
T 1hxm_A 163 FDPAIVIS-------PSGKYNAVKLGKYEDSNSVTCSVQHDNKT 199 (229)
T ss_dssp CCCEEEEC-------TTSSEEEEEEEEETTTTTCEEEEEETTEE
T ss_pred CccceEEC-------CCCcEEEEECcccCCCCcEEEEEEeCCCC
Confidence 22222111 12333333333 36789999999998743
No 422
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.51 E-value=2.6e-13 Score=108.29 Aligned_cols=160 Identities=15% Similarity=0.200 Sum_probs=93.3
Q ss_pred eeceEEecCCcEEEEEEec-cCceEEEEEcC--ccce---eec--------cCcceEEEeeeeCCeEEEEEeecc--cCc
Q psy15235 28 FGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNIN---QSS--------VDSGFAATANLTEDNFKYSIHEAI--LES 91 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~---~~~--------~~~~~~~~~~~~~~~~~l~i~~~~--~~G 91 (323)
+..+.+.+|++|+|.|.+. +.+.+.|+|+. .... ... ...++........+...|.|.+++ |+|
T Consensus 10 p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G 89 (252)
T 1oga_E 10 PKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA 89 (252)
T ss_dssp CSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCE
Confidence 5668899999999999953 46789999953 2111 100 001111111111344566666665 599
Q ss_pred ceEEEeeccC------Cc-cceeeee----eeCCceeEE-------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235 92 GYVQSSLFIP------RM-NAITGNY----DIEPKYKVF-------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE 153 (323)
Q Consensus 92 ~Y~C~~~~~~------~~-~~~~~~~----~~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~ 153 (323)
.|+|.+.+.. +. ..+.+.. ...|.+.+. ..|+.++|.|.+.+..|. .+.|.|+++|..+..
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~~~g~~l~~ 168 (252)
T 1oga_E 90 FYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEVHS 168 (252)
T ss_dssp EEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEEECS
T ss_pred EEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCC-CcEEEEEECCEECCC
Confidence 9999998751 11 1111111 012333332 258999999999986431 359999999987754
Q ss_pred cccc------------cCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235 154 ATEL------------SGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS 190 (323)
Q Consensus 154 ~~~~------------~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~ 190 (323)
.... +..+ .....|.|...... |.|.|+|.+ .|..
T Consensus 169 ~~~~~~~~~~~~~~~~~gt~-~~~s~L~i~~~~~~d~~~~ytC~v-~~~~ 216 (252)
T 1oga_E 169 GVSTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG 216 (252)
T ss_dssp SEEECSSCEESCTTSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EECC
T ss_pred CcccccccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEE-EcCC
Confidence 2111 1111 22334677665543 577999999 6663
No 423
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=110.97 Aligned_cols=171 Identities=19% Similarity=0.295 Sum_probs=102.0
Q ss_pred eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c---------cccccCcEE------eceeEEEEeeee
Q psy15235 116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E---------ATELSGRLT------QSKDSITIRKTT 174 (323)
Q Consensus 116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~---------~~~~~~~~~------~~~~~l~i~~~~ 174 (323)
...+.+|++++|.|...+.... ...+.||+. +.... . ...+.+|+. .....|+|.+++
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFS-NHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT 110 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGG-TSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred CEEEeCCCcEEEEEEeeCCccC-CCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence 3568899999999998652111 468999983 21110 0 112345665 234569999999
Q ss_pred cCCCeeEEEEEEcC-------CC------------C-CC---CCceeeeeEEE----ecceee-eeceeEEeeCCeEEEE
Q psy15235 175 VDDAGQYSCRLIDP-------KS------------T-NT---TPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLE 226 (323)
Q Consensus 175 ~~d~G~y~C~~~~~-------~~------------~-~~---~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~ 226 (323)
.+|+|.|.|.+ .+ .. . .. .......+.|. .+|.+. ..+.....+|+.++|.
T Consensus 111 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~ 189 (267)
T 3u1s_H 111 ADDTAIYYCLT-GSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALG 189 (267)
T ss_dssp GGGCEEEEEEE-EEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEE
T ss_pred hhhCEEEEEEE-CcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEE
Confidence 99999999999 41 00 0 00 01112345554 244444 2333334679999999
Q ss_pred EEEec-CC-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 227 CLVVG-SP-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 227 C~~~g-~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
|.+.+ .| ++.+.| ++..+.............++ ....+.|+|.....+| |.|+|.+.|..+.
T Consensus 190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence 99976 45 457999 55444211000000000111 1234679999998889 9999999998844
No 424
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.50 E-value=7.1e-13 Score=106.31 Aligned_cols=160 Identities=13% Similarity=0.217 Sum_probs=93.0
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e----------ccCcceEEEeeeeCCeEEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S----------SVDSGFAATANLTEDNFKYSI 84 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~----------~~~~~~~~~~~~~~~~~~l~i 84 (323)
.+..+..+.+.+|++|+|.|.... ...+.|+|.. +.... . ....+..+..+.....+.|.|
T Consensus 3 ~v~~~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 82 (263)
T 3iu4_H 3 QLKESGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKM 82 (263)
T ss_dssp EEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEE
T ss_pred eEECCCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEE
Confidence 456677788999999999999542 4689999842 22111 0 012223333333456777888
Q ss_pred eeccc--CcceEEEeeccCC------c----c--ceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCCceE
Q psy15235 85 HEAIL--ESGYVQSSLFIPR------M----N--AITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQI 142 (323)
Q Consensus 85 ~~~~~--~G~Y~C~~~~~~~------~----~--~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i 142 (323)
.+++. +|.|+|.+.+... . . .+.+.... .|.+.. +..|+.++|.|.+.+..|. .+.+
T Consensus 83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~-~~~v 161 (263)
T 3iu4_H 83 NSLQTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPE-PVTV 161 (263)
T ss_dssp CSCCGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSS-CCEE
T ss_pred CCCCHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCC-ceEE
Confidence 87764 9999999976431 0 1 11111011 122221 2368899999999886653 3789
Q ss_pred EEEECCeeccccc-------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 143 VWYKGNKSITEAT-------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 143 ~W~~~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.| ++..+.... ..++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus 162 ~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 210 (263)
T 3iu4_H 162 SW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 210 (263)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-CCCEEEE-EEG
T ss_pred EE--CCcccCCceeecCceECCCCCE-EEEEEEEECHhHcCC-CEEEEEE-EEC
Confidence 99 444332100 011222 223468888887778 9999999 665
No 425
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.7e-14 Score=95.33 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=69.2
Q ss_pred ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
....+.+|+.+.|.|.+.|.| |.+.|++++..+... .++.+. ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g~- 79 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES-NRTRIT--------GEEVEVQDSVPADSGLYACVTSSPSGS- 79 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC-SSEEEC--------SSEEEETTCCTTTCEEEEEEEEETTEE-
T ss_pred cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC-CcEEEE--------CCEEEEccCCHHHCEEEEEEEEeCCce-
Confidence 345677899999999999886 799999999877543 344433 568999999999999999999999966
Q ss_pred CCCceeEEEEEEcceecC
Q psy15235 293 SQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 293 ~~~~~~~~~l~v~~~~~~ 310 (323)
....+.|.|.+.++.
T Consensus 80 ---~~~~~~l~V~~~~~s 94 (99)
T 2cr3_A 80 ---DTTYFSVNVSDALPS 94 (99)
T ss_dssp ---EEEEEEECBCSCCSC
T ss_pred ---EEEEEEEEEecCCCC
Confidence 788888988887654
No 426
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.50 E-value=4.4e-14 Score=96.72 Aligned_cols=86 Identities=29% Similarity=0.444 Sum_probs=69.7
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+.. .. ...+|.|.+++.+|+|.|+|.|.|..|
T Consensus 20 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G 94 (106)
T 1nct_A 20 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTT--TK--YKSTFEISSVQASDEGNYSVVVENSEG 94 (106)
T ss_dssp CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC-SSEEEEE--CS--SEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEE--CC--CEEEEEECcCCchhCEEEEEEEEeCCC
Confidence 445677889999999999999999999999999877543 4444441 11 357999999999999999999999996
Q ss_pred CCCCCceeEEEEEEc
Q psy15235 291 RNSQPNEAFVYVRVK 305 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~ 305 (323)
. ....+.|.|.
T Consensus 95 ~----~~~~~~l~V~ 105 (106)
T 1nct_A 95 K----QEAEFTLTIQ 105 (106)
T ss_dssp B----CCEEEEEEEC
T ss_pred e----EEEEEEEEEE
Confidence 6 7778888775
No 427
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.50 E-value=2.3e-13 Score=91.94 Aligned_cols=90 Identities=18% Similarity=0.334 Sum_probs=68.3
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+++|..+.... ..++. .....|.|.+++.+|+|.|+
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEP---TPEVTWSCGGRKIHSQE--QGRFHIENTDDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEES---CCEEEEEETTEECCTTG--GGTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECceEeeeec--cceeeeecccceEEEEEcCCCccCCEEEE
Confidence 45555566777788999999999999988 78999999999886521 22333 44568999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEE
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
|.| .|..+ ..+..+.|.|.
T Consensus 80 C~a-~N~~G--~~~~~~~l~V~ 98 (100)
T 3knb_A 80 LSL-GNEFG--SDSATVNIHIR 98 (100)
T ss_dssp EEE-EETTE--EEEEEEEEEEE
T ss_pred EEE-EECCC--EEEEEEEEEEE
Confidence 999 77743 34445555553
No 428
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=116.40 Aligned_cols=159 Identities=9% Similarity=0.146 Sum_probs=93.2
Q ss_pred eeceE-EecCCcEEEEEEeccC------ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235 28 FGDTE-IMEGAPINISCILTIF------EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSL 98 (323)
Q Consensus 28 ~~~~~-v~~G~~v~L~C~~~~~------~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~ 98 (323)
+.... +.+|++++|.|.+.+. ..|+|+|++..+.....................|.|..+ .|+|.|+|.+.
T Consensus 174 p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~ 253 (376)
T 2aty_A 174 PKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN 253 (376)
T ss_pred cCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEe
Confidence 33344 7899999999995433 379999998665432100000000001112234555544 35899999998
Q ss_pred ccCCccceeeee----ee--CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCc
Q psy15235 99 FIPRMNAITGNY----DI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGR 160 (323)
Q Consensus 99 ~~~~~~~~~~~~----~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~ 160 (323)
+..........+ .+ .|.+.+ ...|+.++|.|.+.+..|. ...|+|+|||..+...... ++.
T Consensus 254 ~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~-~i~v~W~k~g~~~~~~~~~~~~~~~dgt 332 (376)
T 2aty_A 254 SAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPE-DITVEWQWNGQPAENYKNTQPIMNTNES 332 (376)
T ss_pred cCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECC-CcEEEEEECCEECCCeEeCCceECCCCC
Confidence 765532221111 11 233322 2247899999999986543 4699999999877431110 111
Q ss_pred EEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+ .....|.|.....+|.|.|+|.| .|.
T Consensus 333 y-~~~s~L~i~~~~~~~~~~YtC~v-~h~ 359 (376)
T 2aty_A 333 Y-FVYSKLNVQKSNWEAGNTFTCSV-LHE 359 (376)
T ss_pred E-EEEEEEEEcHHHhCCCCcEEEEE-EeC
Confidence 1 22345666666667889999999 665
No 429
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=108.65 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=109.3
Q ss_pred CCceeEEecCCcEEEEEEeecCCCC-----------CCceEEEEEC--Ce--eccc---cc-----c-ccCc--E-----
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPG-----------DDYQIVWYKG--NK--SITE---AT-----E-LSGR--L----- 161 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~-----------~~~~i~W~~~--~~--~~~~---~~-----~-~~~~--~----- 161 (323)
.+....+..|++++|.|.....++. +...+.||+. |. .+.. .. . ..++ +
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 4555668899999999988643311 0357999973 32 1110 00 0 1111 1
Q ss_pred ------EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeE--EeeCC-eEEEEEEEecC
Q psy15235 162 ------TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT--VIEGE-KLRLECLVVGS 232 (323)
Q Consensus 162 ------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~g~-~~~l~C~~~g~ 232 (323)
...+..|.|.+++.+|+|.|.|.+ .+.. ......+.|.|..+|.+.+..... +..|+ .++|.|.+.|.
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v-~~~~--~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf 320 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATI-HLPY--LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF 320 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEE-Eecc--cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence 135678999999999999999999 5542 234556677888888776543222 34576 79999999875
Q ss_pred -CC--CcEEEE-ECCe---eeeccCCe--eeeecCCCC-CCcceeEEEeecCcCCC-eEEEEEEeecccCCCCCceeEEE
Q psy15235 233 -PP--PTVEWR-IGND---TYFRSQGR--IKLSEHPEK-GTANSVLQIDEATMADR-GNYYCHGNNVATRNSQPNEAFVY 301 (323)
Q Consensus 233 -p~--~~~~W~-~~~~---~~~~~~~~--~~~~~~~~~-~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~~~~~~~~~~~ 301 (323)
|. +.+.|. +++. .+...... .......++ ....+.|.+...+.++. +.|+|.+.|..-. .++....++
T Consensus 321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~-~g~rs~sVt 399 (401)
T 3f8u_B 321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLP-ASGRSAEVT 399 (401)
T ss_dssp BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSC-TTCEEEEEE
T ss_pred cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCC-CCcceEEEE
Confidence 65 689995 7652 11111100 000100111 12345677776643344 5999999998632 133444444
Q ss_pred E
Q psy15235 302 V 302 (323)
Q Consensus 302 l 302 (323)
|
T Consensus 400 L 400 (401)
T 3f8u_B 400 L 400 (401)
T ss_dssp C
T ss_pred e
Confidence 3
No 430
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=92.78 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=68.0
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|.+ .|.+.+.|++||..+..+ .++.+.. .+ ....|.|.++..+|+|.|+|.|.|..
T Consensus 13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~-~r~~i~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~- 84 (100)
T 2yuz_A 13 PLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES-DRLKVVQ--KG--RIHKLVIANALTEDEGDYVFAPDAYN- 84 (100)
T ss_dssp CCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC-SSEEEEE--CS--SEEEEEESSCCGGGCSEEEEEESSSC-
T ss_pred cCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC-CcEEEEE--eC--CEEEEEECCCChhhCEEEEEEEcCCC-
Confidence 3446778999999999999 888999999999988643 4554441 11 24689999999999999999999973
Q ss_pred CCCCCceeEEEEEEcceec
Q psy15235 291 RNSQPNEAFVYVRVKGKSF 309 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~ 309 (323)
....+.|.|.++|.
T Consensus 85 -----~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 85 -----VTLPAKVHVISGPS 98 (100)
T ss_dssp -----CCEEEEEEEECCSC
T ss_pred -----eeEEEEEEEeCCCC
Confidence 55677788877664
No 431
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.49 E-value=2.7e-13 Score=93.13 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=66.4
Q ss_pred eeceeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeecc--CCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRS--QGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
.+....+.+|+.++|.|.+.|.|. |.+.|++++...... ..++.+... .........|.|.+++.+|+|.|+|
T Consensus 10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 89 (108)
T 3cx2_A 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRC 89 (108)
T ss_dssp CCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEE
T ss_pred CCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEE
Confidence 455677899999999999999988 899999987322211 123332210 0111135789999999999999999
Q ss_pred EEeecccCCCCCceeEEEEEEc
Q psy15235 284 HGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.|.|..|. ..+.+.|.|.
T Consensus 90 ~a~N~~G~----~~~~~~L~V~ 107 (108)
T 3cx2_A 90 EVSTKDKF----DCSNFNLTVH 107 (108)
T ss_dssp EEECSSCE----EEEEEEEEEE
T ss_pred EEecCCCc----eEEEEEEEEe
Confidence 99999965 8888888875
No 432
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.49 E-value=3e-13 Score=124.44 Aligned_cols=167 Identities=11% Similarity=0.112 Sum_probs=106.6
Q ss_pred CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCCCCCCCceeee
Q psy15235 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKSTNTTPLAQAD 200 (323)
Q Consensus 122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~~~~~~~~ 200 (323)
...+.|.|.+.|.| .+.+.|.++|..+.. .....+.|..+... ..+.|.|.+ .+..+... ...+.
T Consensus 91 ~g~l~v~c~~~g~P---~p~i~W~k~g~~~~~---------~~~~~~~i~~~~~~~~~l~~~~va-~~~~G~~~-~~~v~ 156 (731)
T 2v5y_A 91 PGLLNVYVKVNNGP---LGNPIWNISGDPTRT---------WNRAELAISTFWPNFYQVIFEVIT-SGHQGYLA-IDEVK 156 (731)
T ss_dssp SEEEEEEEEETTCC---CCSEEEEECCCCCSS---------CEEEEEEECCCTTSCEEEEEEEEE-CSSCCEEE-ECCBE
T ss_pred cceEEEEEecCCCC---ccceeEEEeCCcCCc---------eeEEEEEEeecCCCceEEEEEEEe-cCCceEEE-EeeEE
Confidence 45789999999988 789999999977643 12223344332112 235666655 44422111 01111
Q ss_pred eE---EEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEE-EE--ECCeeeeccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235 201 FD---VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE-WR--IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274 (323)
Q Consensus 201 l~---v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 274 (323)
+. +..+|.+..+.+..+.+|+++.|.|.+.|.|.|.+. |+ +++..+.... ...+. .....+.|+|.++.
T Consensus 157 ~~~~~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~----~~~~~~~l~I~~~~ 231 (731)
T 2v5y_A 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTS----SRRFIASFNVVNTT 231 (731)
T ss_dssp EESSCCSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE-EEECC----SSEEEEEEEECSCC
T ss_pred eeecccccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc-eEEec----cccceEEEEEcccc
Confidence 11 113455555567888999999999999999999987 77 6776664321 11111 11135789999999
Q ss_pred cCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 275 ~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
..|.|.|+|.|.|..|. ..+..+.|.|...|.+
T Consensus 232 ~~d~g~Y~c~A~n~~G~---~~s~~~~l~V~~~P~~ 264 (731)
T 2v5y_A 232 KRDAGKYRCMIRTEGGV---GISNYAELVVKEPPVP 264 (731)
T ss_dssp TTTCEEEEEEEEETTEE---EECCCEEEEEECCCCB
T ss_pred cccCeEEEEEEECCCCC---cceeeEEEEEecCCCC
Confidence 99999999999999964 1344456667666554
No 433
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=91.40 Aligned_cols=77 Identities=21% Similarity=0.447 Sum_probs=62.5
Q ss_pred ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 292 (323)
....+.+|+.+.|.|.+.|+|.|.+.|++++..+... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~- 75 (91)
T 3bfo_A 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------------TKKLYMVPYVDLEHQGTYWCHVYNDRDS- 75 (91)
T ss_dssp CCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC--------------CSSEEEESSCCGGGCEEEEEEEECSSCE-
T ss_pred CccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC--------------CCCeEEECCCCHHhCEEEEEEEEcCCCC-
Confidence 3556889999999999999999999999999876432 2468999999999999999999999965
Q ss_pred CCCceeEEEEEEcc
Q psy15235 293 SQPNEAFVYVRVKG 306 (323)
Q Consensus 293 ~~~~~~~~~l~v~~ 306 (323)
..+..+.|.|.+
T Consensus 76 --~~s~~~~l~V~~ 87 (91)
T 3bfo_A 76 --QDSKKVEIIIDE 87 (91)
T ss_dssp --EECCCEEEEEC-
T ss_pred --EEeeeEEEEEeh
Confidence 133556776654
No 434
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.48 E-value=1.6e-13 Score=92.97 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=65.1
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...+.+|+.+.|.|.+.|.|.+.+.|++++..+...... +.... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 90 (100)
T 3caf_A 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPSDKGNYTCVVENEYGS 90 (100)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG------GGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec------CeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence 456788999999999999999999999999887643221 12221 3468999999999999999999999966
Q ss_pred CCCCceeEEEEEE
Q psy15235 292 NSQPNEAFVYVRV 304 (323)
Q Consensus 292 ~~~~~~~~~~l~v 304 (323)
....+.|.|
T Consensus 91 ----~~~~~~l~V 99 (100)
T 3caf_A 91 ----INHTYHLDV 99 (100)
T ss_dssp ----EEEEEEEEE
T ss_pred ----EEEEEEEEE
Confidence 677777766
No 435
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.48 E-value=1.1e-12 Score=104.38 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=96.3
Q ss_pred eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235 24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKYS 83 (323)
Q Consensus 24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l~ 83 (323)
.+..+.++.+.+|++|+|.|...+ ...+.|+|.. +.+... ....+.....+.....+.|.
T Consensus 2 ~l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 81 (248)
T 3u2s_H 2 RLVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQ 81 (248)
T ss_dssp EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred ceecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEE
Confidence 456778889999999999999642 4689999842 221110 01222333333335677888
Q ss_pred Eeeccc--CcceEEEeeccCC--------------------c----cceeeeee--e--CCcee------EEecCCcEEE
Q psy15235 84 IHEAIL--ESGYVQSSLFIPR--------------------M----NAITGNYD--I--EPKYK------VFEYRVPFTL 127 (323)
Q Consensus 84 i~~~~~--~G~Y~C~~~~~~~--------------------~----~~~~~~~~--~--~~~~~------~~~~g~~v~l 127 (323)
|.+++. +|.|.|.+.+..+ . ......+. . .|.+. .+..|+.++|
T Consensus 82 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L 161 (248)
T 3u2s_H 82 MNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAAL 161 (248)
T ss_dssp ECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEE
T ss_pred ECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEE
Confidence 887764 9999999975310 0 01111111 0 12111 1345899999
Q ss_pred EEEeecCCCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 128 KCNVTSPPPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 128 ~C~~~~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
.|.+.+..|. ...+.|++++..+... ...++.+ .....|.|.....+| |.|+|.+ .|.
T Consensus 162 ~C~~~~~~P~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 224 (248)
T 3u2s_H 162 GCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 224 (248)
T ss_dssp EEEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGBTT-BCCEEEE-EEG
T ss_pred EEEEeeEECC-CeEEEEeECCccCceeecCceECCCCCE-EEEEEEEEChhhcCC-CeEEEEE-EEC
Confidence 9999886543 4689999988643220 0112222 233567788877778 9999999 665
No 436
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.46 E-value=1.9e-12 Score=101.51 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=96.4
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY 82 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l 82 (323)
..+..+..+.+.+|++|+|.|.... ...+.|+|.. +..... ....+..+..+.....+.|
T Consensus 2 v~v~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (226)
T 3mlr_H 2 VQLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYL 81 (226)
T ss_dssp CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEE
T ss_pred ceEEcCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEE
Confidence 3456677788999999999999532 4689999942 221110 0112333333333567788
Q ss_pred EEeeccc--CcceEEEeeccCC------------c-cceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCC
Q psy15235 83 SIHEAIL--ESGYVQSSLFIPR------------M-NAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDD 139 (323)
Q Consensus 83 ~i~~~~~--~G~Y~C~~~~~~~------------~-~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~ 139 (323)
.|.+++. +|.|+|.+.+... . ..+.+.... .|.+.. ...|+.++|.|.+.+..|. .
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~-~ 160 (226)
T 3mlr_H 82 QWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-P 160 (226)
T ss_dssp EESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSS-C
T ss_pred EECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECC-C
Confidence 8888764 9999999965421 0 011111111 222221 2368999999999886543 4
Q ss_pred ceEEEEECCeeccccc-------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 140 YQIVWYKGNKSITEAT-------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 140 ~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
..+.| ++..+.... ..++.+ .....|.|.+...+| |.|+|.+ .+.
T Consensus 161 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~ 212 (226)
T 3mlr_H 161 VTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK 212 (226)
T ss_dssp CEEEE--GGGTCCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred eEEEE--CCccccCCeEeCCcEECCCCCE-EEEEEEEECHhHcCC-CeEEEEE-EEC
Confidence 68999 443332100 011222 223468888888788 9999999 665
No 437
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.46 E-value=3.3e-13 Score=90.41 Aligned_cols=84 Identities=25% Similarity=0.366 Sum_probs=67.6
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+....+.+|+.+.|.|.+.+ .|.+.|++++..+... .++.+. ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~-~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 76 (95)
T 4hwu_A 8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN-NRTVLI--------GEYLQIKGATPRDSGLYACTAARTVDS 76 (95)
T ss_dssp CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC-SSEEEE--------TTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC-ceEEEe--------CCEEEECcCCcccCEEEEEEEccCCCc
Confidence 44567889999999999986 5799999999888543 444444 568999999999999999999999955
Q ss_pred CCCCceeEEEEEEcceecC
Q psy15235 292 NSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 292 ~~~~~~~~~~l~v~~~~~~ 310 (323)
....+.|.|.+++..
T Consensus 77 ----~~~~~~l~V~~~~~~ 91 (95)
T 4hwu_A 77 ----ETWIFMVNVTDAAEN 91 (95)
T ss_dssp ----EEEEEEEEECCC---
T ss_pred ----EEEEEEEEEeCCccc
Confidence 888899999887654
No 438
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=94.25 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=64.3
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 17 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 82 (96)
T 2ens_A 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP--------------PSPVLILPEIGPQDQGTYSCVATHSSHG 82 (96)
T ss_dssp STTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC--------------CCSEEEEESCCTTTCEEEECEECCSSCC
T ss_pred CCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC--------------CCCEEEECCCCcccCEEEEEEEEeCCCC
Confidence 33566889999999999999999999999998876432 2578999999999999999999997654
Q ss_pred CCCCceeEEEEEEcc
Q psy15235 292 NSQPNEAFVYVRVKG 306 (323)
Q Consensus 292 ~~~~~~~~~~l~v~~ 306 (323)
...+..+.|.|.+
T Consensus 83 --~~~s~~~~v~V~~ 95 (96)
T 2ens_A 83 --PQESRAVSISIIE 95 (96)
T ss_dssp --CEECCCEEEEECC
T ss_pred --cEEEEEEEEEEeC
Confidence 3355667777764
No 439
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.46 E-value=8.8e-13 Score=106.53 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=107.9
Q ss_pred eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec-cccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI-TEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
+.|+...+.+|+++.|.|.+.... ...+.|.-. ...+ .. + .....+.+.++..+ |.|.|.+ ..
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~~----g----~~~~~~~l~~v~~~--~~y~C~~-~~ 69 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTSCDQ---PKLLGIETPLPKKELLLP----G----NNRKVYELSNVQED--SQPMCYS-NC 69 (291)
T ss_dssp EECSEEEECTTCEEEEEEEECCSS---CSEEEEECSSCCCCCCCS----C----SSEEEEEEESCCSC--CCCEEEE-EC
T ss_pred EeCCccEEcCCCeEEEEEeCCCCC---CccceEEecCCCcccccC----C----CceEEEEEEecccC--CeEEEEE-Ec
Confidence 445667789999999999997544 235888531 1111 11 0 12235677777643 5799999 54
Q ss_pred CCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEecC-CCC--cEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 189 KSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVGS-PPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
. .......+.+.|..+|... +.. ...+.+|+.++|.|.+.|. |.. .++|++++..+...... . ..
T Consensus 70 ~--~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---~-----~~ 139 (291)
T 1mq8_A 70 P--DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---G-----EP 139 (291)
T ss_dssp S--SCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---B-----TT
T ss_pred C--CccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---C-----CC
Confidence 4 2356667778887766322 221 2447889999999999776 443 48999999887533210 1 01
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccCCC----CCceeEEEEEEcceecC
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATRNS----QPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~----~~~~~~~~l~v~~~~~~ 310 (323)
...+|++.....+|.+.|+|.|.|..+..+ ...+....|.|...|..
T Consensus 140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~ 190 (291)
T 1mq8_A 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190 (291)
T ss_dssp EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------
T ss_pred ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC
Confidence 346677777777777799999999865311 12345567777766543
No 440
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=2.1e-13 Score=94.99 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=66.9
Q ss_pred eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECCeee-e-ccCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDTY-F-RSQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
.+.+..+.+|++++|.|.+.+. |.|.++|+|+.... . ....++.+... .........|.|.+++.+|+|.|+|
T Consensus 13 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~C 92 (126)
T 2dav_A 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC 92 (126)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred cCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEE
Confidence 4566788999999999999764 88999999964211 1 11233333210 1111235889999999999999999
Q ss_pred EEeecccCCCCCceeEEEEEEcc
Q psy15235 284 HGNNVATRNSQPNEAFVYVRVKG 306 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l~v~~ 306 (323)
+|.|..|. .++.+.|.|..
T Consensus 93 evsn~~g~----~~~~~~L~V~~ 111 (126)
T 2dav_A 93 EVTYKDKF----DSCSFDLEVHE 111 (126)
T ss_dssp EEECSSCE----EEECCEEEEEC
T ss_pred EEEeCCCc----EEEEEEEEEEe
Confidence 99999965 77888888877
No 441
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.45 E-value=2.7e-12 Score=96.73 Aligned_cols=163 Identities=16% Similarity=0.182 Sum_probs=104.8
Q ss_pred eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+.|+...+..|+++.|.|.+.... ...+.|.-.- ..+.. ......+.+.+++ +|.+.|.|.+ .-
T Consensus 6 ~v~P~~~~V~~G~Sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~--------g~~~~~~~ls~vs-~d~~~~~C~~-~c 72 (196)
T 3bn3_B 6 DLQPRVAFVERGGSLWLNCSTNCPR---PERGGLETSLRRNGTQR--------GLRWLARQLVDIR-EPETQPVCFF-RC 72 (196)
T ss_dssp EEESSEEEEETTEEEEEEEEECCSS---CSEEEEECSSEEEEEEE--------ETTEEEEEEEEEC-SSEECCEEEE-EE
T ss_pred EEcCCCcEEcCCCeEEEEEeCCCCC---CCccEEEEccCCeeEcc--------ccCceEEEEEEEc-cCCCceEEEE-EC
Confidence 3456667789999999999996544 2367774321 11111 0122347888988 7877799999 33
Q ss_pred CCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEecC-CCCc--EEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235 189 KSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVGS-PPPT--VEWRIGNDTYFRSQGRIKLSEHPEKGT 263 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~-p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
. .......+.|+|..+|... +.. ...+.+|+.++|.|.+.+. |... +.|++++..+.... +. ........
T Consensus 73 ~--~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~--~~-~~~~~~~~ 147 (196)
T 3bn3_B 73 A--RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS--FA-GEPPRARG 147 (196)
T ss_dssp T--TEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE--CT-TSCTTCCC
T ss_pred C--CCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc--cc-cccccccc
Confidence 3 2456778888888866332 222 2347899999999999775 5444 89999999885322 10 00000001
Q ss_pred cceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 264 ANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
...++++.....+|...|+|.|.+..+.
T Consensus 148 ~t~~~~~~~~r~D~g~~~sC~A~l~l~~ 175 (196)
T 3bn3_B 148 AVLTATVLARREDHGANFSCRAELDLRP 175 (196)
T ss_dssp EEEEEEEECCGGGTTCEEEEEEEEECGG
T ss_pred eeEEEEEeeeeccCCCeEEEEEEccCCc
Confidence 2356667666655555999999998863
No 442
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=93.75 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECCee-eec-cCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDT-YFR-SQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC 283 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C 283 (323)
.|.+..+.+|++++|.|.+.|. |.|.|+|+|+... +.. ...++.+... .........|.|.++..+|+|.|+|
T Consensus 18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 97 (118)
T 2edn_A 18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRL 97 (118)
T ss_dssp CCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEE
T ss_pred CCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEE
Confidence 4567789999999999999875 7889999997421 111 1233333210 1111135889999999999999999
Q ss_pred EEeecccCCCCCceeEEEEEEcce
Q psy15235 284 HGNNVATRNSQPNEAFVYVRVKGK 307 (323)
Q Consensus 284 ~a~n~~g~~~~~~~~~~~l~v~~~ 307 (323)
+|.|..|. .++.+.|.|..+
T Consensus 98 evsn~~g~----~s~~~~L~V~~~ 117 (118)
T 2edn_A 98 EVKAKDTC----DSCGFNIDVEAP 117 (118)
T ss_dssp EEECSSCE----EEEEECCEEECC
T ss_pred EEEEcCCc----EEEEEEEEEEcC
Confidence 99999966 888999888763
No 443
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.45 E-value=6.7e-13 Score=93.37 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=66.7
Q ss_pred eeEEeeCCeEEEEEEEecC--CCCcEEEEECCeeeec----cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 214 TLTVIEGEKLRLECLVVGS--PPPTVEWRIGNDTYFR----SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
...+.+|+.+.|.|.+.|. |.+.+.|++++..+.. ...+..... .......++|+|.+++.+|+|.|+|.|.|
T Consensus 17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 95 (122)
T 3s35_X 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG-SEMKKFLSTLTIDGVTRSDQGLYTCAASS 95 (122)
T ss_dssp CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE-TTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC-CceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence 3467899999999999985 4568999998874321 111111000 00001357899999999999999999999
Q ss_pred cccCCCCCceeEEEEEEcceecCc
Q psy15235 288 VATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 288 ~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
..|. ....+.|.|.++|...
T Consensus 96 ~~g~----~~~~~~l~V~~~p~i~ 115 (122)
T 3s35_X 96 GLMT----KKNSTFVRVHEKPFVA 115 (122)
T ss_dssp SSCE----EEEEEEEEEEEEECC-
T ss_pred CCCc----eEEEEEEEEeccCeEE
Confidence 9965 7789999999888654
No 444
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.45 E-value=1e-12 Score=87.38 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=57.6
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+..+.+|+.+.|.|.+.+ |++.+.|++||..+..+ .++.+.. ++ ....|.|.+++.+|+|.|+|.|.|..
T Consensus 11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-~~~~i~~--~g--~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T 1waa_A 11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-PDCEIIE--DG--KKHILILHNCQLGMTGEVSFQAANTK 83 (93)
T ss_dssp CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-TTEEEEE--ET--TEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-CCEEEEE--EC--CEEEEEECCCChhhCEEEEEEECCCc
Confidence 344678899999999999976 45789999999988654 4454441 11 24689999999999999999998854
No 445
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.44 E-value=1.4e-12 Score=116.77 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=93.7
Q ss_pred eceEEecCCcEEEEEEe---ccCceEEEEEcCccceee---------ccCcceEEEeeeeCCeEEEEEeecc--cCcceE
Q psy15235 29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQS---------SVDSGFAATANLTEDNFKYSIHEAI--LESGYV 94 (323)
Q Consensus 29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~ 94 (323)
..+.+.+|++++|.|.+ .+.+.++|++++..+... ....+... ...+ .|.|.+++ |+|.|+
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~--~L~i~~v~~~D~G~Y~ 448 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV---LPNG--SLFLPAVGIQDEGIFR 448 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE---CTTS--CEEESSCCGGGCEEEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE---cCCc--eEEEeccccccCeEEE
Confidence 45778999999999995 356799999987633211 00111111 1123 45555554 599999
Q ss_pred EEeeccCCcc-ceeeeeee--CC-ce------eEEecCCc-EEEEEEeecC-CCCCCceEEEEECCeeccccccccCcEE
Q psy15235 95 QSSLFIPRMN-AITGNYDI--EP-KY------KVFEYRVP-FTLKCNVTSP-PPGDDYQIVWYKGNKSITEATELSGRLT 162 (323)
Q Consensus 95 C~~~~~~~~~-~~~~~~~~--~~-~~------~~~~~g~~-v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~ 162 (323)
|.+.+..+.. .....+.+ .+ .. ..+..++. +.|.|.+.+. | .+.|+|+++|..+... ..++.
T Consensus 449 C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P---~~~i~W~~~g~~l~~~---~~~~~ 522 (581)
T 3o3u_N 449 CQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYP---AGTLSWHLDGKPLVPN---EKGVS 522 (581)
T ss_dssp EEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBS---CCEEEEEETTEECCTT---STTEE
T ss_pred EEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCC---CCeEEEEECCEECCCC---CCeEE
Confidence 9999876654 22233322 11 11 11334444 4679999885 5 6899999999887641 11111
Q ss_pred --------------eceeEEEEeeee-cCCCeeEEEEEEcCCC
Q psy15235 163 --------------QSKDSITIRKTT-VDDAGQYSCRLIDPKS 190 (323)
Q Consensus 163 --------------~~~~~l~i~~~~-~~d~G~y~C~~~~~~~ 190 (323)
.....|.|.++. .++.|.|+|.+ +|..
T Consensus 523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~-~n~~ 564 (581)
T 3o3u_N 523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSF-SPGL 564 (581)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEE-ECSS
T ss_pred EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEE-eccC
Confidence 223568888888 44588999999 6764
No 446
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=94.87 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=74.4
Q ss_pred eeeEEEecc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235 199 ADFDVIMKP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276 (323)
Q Consensus 199 ~~l~v~~~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 276 (323)
+.|.|..+| .+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+.. . ......|.|.++..+
T Consensus 5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~--~-~~~~~~L~I~~v~~~ 80 (115)
T 2cr6_A 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDA--Q-PGGYHVLTLRQLALK 80 (115)
T ss_dssp CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS-SSCCBCC--B-TTTBCCBEECSCCTT
T ss_pred EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC-CcEEEEE--c-CCCEEEEEEcCCChh
Confidence 345555544 333 445678899999999999999999999999999888644 3333321 0 113568999999999
Q ss_pred CCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235 277 DRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR 313 (323)
Q Consensus 277 d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~ 313 (323)
|+|.|+|.+ |. ....+.|.|.++|..+.+
T Consensus 81 D~G~Y~C~~----g~----~~~~~~L~V~~~p~~~~~ 109 (115)
T 2cr6_A 81 DSGTIYFEA----GD----QRASAALRVTEKPSVFSR 109 (115)
T ss_dssp TCEEEEEEE----TT----EECCEEEEEECCSSCCSS
T ss_pred hCEEEEEEE----CC----eeEEEEEEEECCCceecc
Confidence 999999993 33 556678888888766543
No 447
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.43 E-value=1.1e-12 Score=90.13 Aligned_cols=93 Identities=22% Similarity=0.390 Sum_probs=69.4
Q ss_pred eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe-eeec------cCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND-TYFR------SQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280 (323)
Q Consensus 208 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 280 (323)
.+..+.+..+.+|+++.|.|.+.+.|.+.+.|++++. .+.. ...++.+.... .....|.|.+++.+|+|.
T Consensus 9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~v~~~D~G~ 85 (108)
T 3m45_A 9 QFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISVSDVSLSDEGQ 85 (108)
T ss_dssp CCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEES---SSEEEEEECSCCGGGCEE
T ss_pred ccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecC---CCcEEEEECCCChhHCeE
Confidence 3345667788999999999999999989999999876 2211 12244332110 136789999999999999
Q ss_pred EEEEEeecccCCCCCceeEEEEEEccee
Q psy15235 281 YYCHGNNVATRNSQPNEAFVYVRVKGKS 308 (323)
Q Consensus 281 y~C~a~n~~g~~~~~~~~~~~l~v~~~~ 308 (323)
|+|.|.| .|. ....+.|.|.++|
T Consensus 86 Y~C~~~n-~~~----~~~~~~L~V~~~P 108 (108)
T 3m45_A 86 YTCSLFT-MPV----KTSKAYLTVLGVP 108 (108)
T ss_dssp EEEEECS-SSC----EEEEEEEEEECCC
T ss_pred EEEEEEc-CCC----cEEEEEEEEEcCC
Confidence 9999999 754 7788888887654
No 448
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.43 E-value=8.1e-13 Score=89.03 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=62.6
Q ss_pred ceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 213 ~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
....+.+|+.+.|.|.+. +.|.+.+.|++++...... +... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~--~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (98)
T 1gl4_B 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMD--------FNGILTIRNVQPSDAGTYVCTGSNMFAM 87 (98)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT--TEEE--------ETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc--eeec--------CCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence 455788999999999998 6899999999975443211 1111 2568999999999999999999999965
Q ss_pred CCCCceeEEEEEEc
Q psy15235 292 NSQPNEAFVYVRVK 305 (323)
Q Consensus 292 ~~~~~~~~~~l~v~ 305 (323)
....+.|.|.
T Consensus 88 ----~~~~~~l~V~ 97 (98)
T 1gl4_B 88 ----DQGTATLHVQ 97 (98)
T ss_dssp ----EEEEEEEEEC
T ss_pred ----cccEEEEEEe
Confidence 7778888775
No 449
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.42 E-value=4.1e-12 Score=98.07 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=89.2
Q ss_pred EeeceEEecCCcEEEEEEecc-CceEEEEEcC--ccceee-------ccCcceEEEee-eeCCeEEEEEeeccc--Ccce
Q psy15235 27 YFGDTEIMEGAPINISCILTI-FEQVKWQLNG--RNINQS-------SVDSGFAATAN-LTEDNFKYSIHEAIL--ESGY 93 (323)
Q Consensus 27 ~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g--~~~~~~-------~~~~~~~~~~~-~~~~~~~l~i~~~~~--~G~Y 93 (323)
.+..+.+.+|++|+|.|.... .+.+.|+|.. ..+... ....+.....+ ...+...|.|.+++. +|.|
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 86 (207)
T 1ypz_E 7 SPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY 86 (207)
T ss_dssp SCSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred CCCeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence 356688999999999999543 3579999953 222110 01112222211 225567788877654 9999
Q ss_pred EEEeeccCC---------c------cceeeeee--e--CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccc
Q psy15235 94 VQSSLFIPR---------M------NAITGNYD--I--EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA 154 (323)
Q Consensus 94 ~C~~~~~~~---------~------~~~~~~~~--~--~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~ 154 (323)
+|.+.+..+ . ..+.+... . .|.+.+.. ..++|.|.+.+..|. .+.+.|+++ ..+...
T Consensus 87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~--~~~~l~C~~~g~~P~-~~~v~W~~~-~~l~~~ 162 (207)
T 1ypz_E 87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK--NGTNVACLVKDFYPK-EVTISLRSS-KKIVEF 162 (207)
T ss_dssp EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEE--ETTEEEEEEEEESSS-CCEEEEECS-SEEEEC
T ss_pred EEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeC--CCCeEEEEEeeEeCC-CeEEEEecC-CcccCC
Confidence 999987531 0 11111110 1 23333332 247999999886542 379999999 665431
Q ss_pred ccccCcEE-eceeEEEEeeeec-CCCeeEEEEEEcCC
Q psy15235 155 TELSGRLT-QSKDSITIRKTTV-DDAGQYSCRLIDPK 189 (323)
Q Consensus 155 ~~~~~~~~-~~~~~l~i~~~~~-~d~G~y~C~~~~~~ 189 (323)
..... .....+.+..... +|.|.|+|.+ .+.
T Consensus 163 ---~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v-~~~ 195 (207)
T 1ypz_E 163 ---DPAIVISPSGKYSAVKLGQYGDSNSVTCSV-QHN 195 (207)
T ss_dssp ---CCEEEECTTSSEEEEECEEESSTTTCEEEE-EET
T ss_pred ---ccceEEcCCCcEEEEEeecccCCCcEEEEE-EEC
Confidence 11111 2223344434433 6789999999 665
No 450
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=89.05 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=53.4
Q ss_pred EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+|+.+.|.|.+.+ |.+.+.|++||..+..+ .++.+.. ++ ...+|.|.++..+|+|.|+|.|.|..
T Consensus 17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~-~~~~i~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~ 84 (91)
T 2lvc_A 17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEES-DFVVLEN--EG--PHRRLVLPATQPSDGGEFQCVAGDEC 84 (91)
T ss_dssp ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC-SSCEEEE--ET--TEEEEEESSCCGGGCSEEEEECSSCE
T ss_pred EEECCCcEEEEEEECC-CCcEEEEEECCEEeeee-eeeeEEe--cC--CeEEEEeCCCChhhcEEEEEEEcceE
Confidence 3457999999999965 88899999999988754 4444441 11 24689999999999999999997654
No 451
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.42 E-value=1.1e-12 Score=89.26 Aligned_cols=87 Identities=25% Similarity=0.310 Sum_probs=65.8
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+....+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ++.+.. .+ ....|.|.+++.+|+|.|+|.|.|.
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n~- 86 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV--EG--KKHILIIEGATKADAAEYSVMTTGG- 86 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEE--ET--TEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEE--cC--CEEEEEECCCCcccCEEEEEEECCC-
Confidence 344667889999999999977 7789999999998865432 334431 11 2478999999999999999999872
Q ss_pred cCCCCCceeEEEEEEcceecC
Q psy15235 290 TRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~~~~~~ 310 (323)
...+.|.|.++|.+
T Consensus 87 -------~~~~~l~V~~~p~p 100 (103)
T 1x44_A 87 -------QSSAKLSVDLKSGP 100 (103)
T ss_dssp -------EEEEEEEEECCCSC
T ss_pred -------cEEEEEEEeCCCCC
Confidence 35666777766654
No 452
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.42 E-value=1.9e-13 Score=106.23 Aligned_cols=157 Identities=12% Similarity=0.200 Sum_probs=90.4
Q ss_pred ceEEEeeceEEecCCcEEEEEEecc--C---ceEEEEEcCccceeec------cCcceEEEeeeeCCeEEEEEeecc--c
Q psy15235 23 GKITYFGDTEIMEGAPINISCILTI--F---EQVKWQLNGRNINQSS------VDSGFAATANLTEDNFKYSIHEAI--L 89 (323)
Q Consensus 23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~---~~v~W~~~g~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~--~ 89 (323)
..+..+....+.+|++++|.|.+.+ . +.+.| + +..+.... ...+.. .....|.|.++. |
T Consensus 6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~------~~~~~L~I~~~~~~D 77 (214)
T 1ow0_A 6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY------SVSSVLPGCAEPWNH 77 (214)
T ss_dssp CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC------CEEEECTTTHHHHHH
T ss_pred EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE------EEEEEEEEeHHHcCC
Confidence 3444566777899999999999543 2 58999 4 43332210 000100 123355565554 4
Q ss_pred CcceEEEeeccCCccceeeee---e--eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc
Q psy15235 90 ESGYVQSSLFIPRMNAITGNY---D--IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL 157 (323)
Q Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~---~--~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~ 157 (323)
+|.|+|.+.+..........+ . ..|.+.+ +..|+.++|.|.+.+.+|. .+.|.|+|||..+......
T Consensus 78 ~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~ 156 (214)
T 1ow0_A 78 GKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPK-DVLVRWLQGSQELPREKYL 156 (214)
T ss_dssp TCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSS-CCEEEEEETTEECCGGGSE
T ss_pred CCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECC-CcEEEEEECCEECCCCcee
Confidence 899999998766443221121 1 1333322 2357889999999986542 3599999999887652100
Q ss_pred cCc-EEe---cee------EEEEeeeecCCCeeEEEEEEcCC
Q psy15235 158 SGR-LTQ---SKD------SITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 158 ~~~-~~~---~~~------~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
... ... .+. .|.+.....++.|.|+|.| .|.
T Consensus 157 ~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v-~n~ 197 (214)
T 1ow0_A 157 TWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV-GHE 197 (214)
T ss_dssp ECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEE-ECT
T ss_pred ecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEE-ECC
Confidence 000 112 222 2333333334588999999 666
No 453
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.41 E-value=2e-12 Score=89.72 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=71.3
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.+.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+
T Consensus 7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 79 (114)
T 2cqv_A 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQ---PITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHCGCYT 79 (114)
T ss_dssp CCEESCCCCSEEEETTCCEEEEEEEESSS---SCEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTCEEEE
T ss_pred CCEEEeCCCCeEEeCCCeEEEEEEEEcCC---CCEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCChhcCEEEE
Confidence 34454566667788999999999999988 789999999988876 44554 23678999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
|.+ .|..+ .....+.|.|..+|
T Consensus 80 C~a-~N~~g--~~~~~~~l~V~~~p 101 (114)
T 2cqv_A 80 LLV-ENKLG--SRQAQVNLTVVDKP 101 (114)
T ss_dssp EEE-ECSSC--EEECCEEEEEECSC
T ss_pred EEE-EECCC--cEEEEEEEEEECCC
Confidence 999 77743 34556677776654
No 454
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=87.83 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.+...+....+.+|+++.|.|.+ .+ .+.+.|+|+|..+.. ..++. .....|.|.++..+|+|.|+|.
T Consensus 9 ~~~~~~~~~~v~~G~~v~l~C~v--~p---~p~v~W~k~g~~l~~----~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (100)
T 2yuz_A 9 KILTPLTDQTVNLGKEICLKCEI--SE---NIPGKWTKNGLPVQE----SDRLKVVQKGRIHKLVIANALTEDEGDYVFA 79 (100)
T ss_dssp CCSBCCCCEEEETTSCCCEEEEC--SS---CCCEEEEETTEECCC----CSSEEEEECSSEEEEEESSCCGGGCSEEEEE
T ss_pred EEeccCCceEEcCCCCEEEEEEe--CC---CCeEEEEECCEECCC----CCcEEEEEeCCEEEEEECCCChhhCEEEEEE
Confidence 33335566678899999999999 45 678999999999876 55554 3346899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEEEecc
Q psy15235 185 LIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
+ .|. ....++.|.|..+|
T Consensus 80 a-~N~----~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 80 P-DAY----NVTLPAKVHVISGP 97 (100)
T ss_dssp E-SSS----CCCEEEEEEEECCS
T ss_pred E-cCC----CeeEEEEEEEeCCC
Confidence 9 775 35677888888766
No 455
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=93.38 Aligned_cols=96 Identities=23% Similarity=0.329 Sum_probs=63.9
Q ss_pred ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC----eeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235 205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG----RIKLSEHPEKGTANSVLQIDEATMADRG 279 (323)
Q Consensus 205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G 279 (323)
.+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..... ..+......+.+.+++.+|+|
T Consensus 8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~D~G 85 (117)
T 2v9t_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL--PSGSLFFLRIVHGRKSRPDEG 85 (117)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEEC--TTSCEEESSCCCBTTBCSSCE
T ss_pred CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEe--cCCcEEEEEEEeCCCCcCcCE
Confidence 355555 34466788999999999999999999999999988764321 11111 111111122333366899999
Q ss_pred EEEEEEeecccCCCCCceeEEEEEEc
Q psy15235 280 NYYCHGNNVATRNSQPNEAFVYVRVK 305 (323)
Q Consensus 280 ~y~C~a~n~~g~~~~~~~~~~~l~v~ 305 (323)
.|+|.|.|..|.. ....+.|.+.
T Consensus 86 ~Y~C~a~N~~G~~---~s~~~~l~~~ 108 (117)
T 2v9t_A 86 VYVCVARNYLGEA---VSHDASLEVA 108 (117)
T ss_dssp EEEEEEEETTEEE---ECCCEEEEEC
T ss_pred EEEEEEEeCccce---EeeeEEEEhh
Confidence 9999999999862 3344455444
No 456
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=88.67 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=75.4
Q ss_pred CceeeeeEEEec-ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEee
Q psy15235 195 PLAQADFDVIMK-PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272 (323)
Q Consensus 195 ~~~~~~l~v~~~-p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 272 (323)
....+.|.|... |.+. .+....+.+|+.+.|.|.+.+. |.+.|++++..+... .++.+.. .+ ....|.|.+
T Consensus 7 ~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~ 79 (113)
T 2edh_A 7 GRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG-DRHSLRQ--DG--ARCELQIRG 79 (113)
T ss_dssp CCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS-SSEEEEE--ET--TEEEEEECS
T ss_pred CcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC-CcEEEEE--CC--CEEEEEECC
Confidence 344556666643 3443 4456788999999999999764 789999999887643 4555441 11 245899999
Q ss_pred cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 273 v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~ 311 (323)
+..+|+|.|+|.| |. ....+.|.|.+.|..+
T Consensus 80 v~~~D~G~Y~C~a----~~----~~~~~~l~V~~~p~~~ 110 (113)
T 2edh_A 80 LVAEDAGEYLCMC----GK----ERTSAMLTVRAMPSGP 110 (113)
T ss_dssp CCSTTCEEEEEEE----TT----EEEEEEEEECCCCCSS
T ss_pred CChhhCEEEEEEe----CC----CCEEEEEEEeCCCCCc
Confidence 9999999999999 33 6678889998887654
No 457
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=91.13 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=67.6
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 284 (323)
+....+.+|++++|.|.+.+.|.+.+.|++++..+.. ...++.+.. ......+|+|.+++.+|+|.|+|.
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~ 84 (124)
T 3rbg_A 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH---HSANQLSITVPNVTLQDEGVYKCL 84 (124)
T ss_dssp EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE---EETTEEEEEESSCCGGGCEEEEEE
T ss_pred CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe---CCCCEEEEEECCCChHHCEEEEEE
Confidence 3456788999999999999999999999986654321 234444331 011257899999999999999999
Q ss_pred EeecccCCCCCceeEEEEEEcceecC
Q psy15235 285 GNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 285 a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
|.|. |. ....+.|.|...|..
T Consensus 85 a~n~-g~----~~~~~~l~V~~~P~~ 105 (124)
T 3rbg_A 85 HYSD-SV----STKEVKVIVLATMKG 105 (124)
T ss_dssp EESS-SE----EEEEEEEEEECC---
T ss_pred EEcC-CC----CcEEEEEEEEeCCCC
Confidence 9998 66 778888888877654
No 458
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=84.79 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=58.3
Q ss_pred eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235 117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN 192 (323)
Q Consensus 117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 192 (323)
..+.+|+.+.|.|.+.+ | .+.|.|+|||.++.. ..++. .....|.|.++..+|+|.|+|.| .+.
T Consensus 6 v~~~~G~~v~l~C~vs~-p---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~n~--- 73 (84)
T 2lu7_A 6 VRSTPGGDLELVVHLSG-P---GGPVRWYKDGERLAS----QGRVQLEQAGARQVLRVQGARSGDAGEYLCDA-PQD--- 73 (84)
T ss_dssp EEECTTSCEEEECCCSC-C---STTCEEEETTEECCC----CSSEEEEECSSCEEEEESSCSSTTCEEEEEEC-TTT---
T ss_pred EEEecCCCEEEEEEECC-C---CcEEEEEECCEEccc----cccEEEeecCCeEEEEecCCCCcccEEEEEEE-CCE---
Confidence 34678999999999865 5 578999999999987 55554 44568999999999999999998 554
Q ss_pred CCCceeeeeEEEe
Q psy15235 193 TTPLAQADFDVIM 205 (323)
Q Consensus 193 ~~~~~~~~l~v~~ 205 (323)
...+.|.|..
T Consensus 74 ---~~~a~l~V~e 83 (84)
T 2lu7_A 74 ---SRIFLVSVEE 83 (84)
T ss_dssp ---CEEEEEEECC
T ss_pred ---EEEEEEEEEC
Confidence 4556666653
No 459
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.39 E-value=4e-12 Score=85.73 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=67.0
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y 181 (323)
.|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKP---DPECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeC---CCEEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCCcCCCEEE
Confidence 45555566677788999999999999988 789999999998876 33332 3456899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEE
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
+|.+ .|..+ .....+.|.|.
T Consensus 78 ~C~a-~N~~g--~~~~~~~l~V~ 97 (99)
T 1g1c_A 78 MVKA-INIAG--ETSSHAFLLVQ 97 (99)
T ss_dssp EEEE-EETTE--EEEEEEEEEEE
T ss_pred EEEE-EECCC--cEEEEEEEEEe
Confidence 9999 67633 33444555543
No 460
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.38 E-value=4.5e-12 Score=86.83 Aligned_cols=92 Identities=25% Similarity=0.374 Sum_probs=69.4
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
..|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 84 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEP---PPVVVWEKGGQQLAA----SERLSFPADGAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEECCEETTEEEEEESSCCGGGCEEE
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecC---CCEEEEEECCeECCC----CCcEEEEeCCCEEEEEEccCCHHhCEEE
Confidence 345555566677788999999999999988 679999999998876 45554 2334899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
+|.+ .|..+ .....+.|.|..+|
T Consensus 85 ~C~a-~n~~g--~~~~~~~l~V~~~P 107 (107)
T 3irg_B 85 VCRA-RNAAG--EAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEE-EETTE--EEEEEEEEEEEC--
T ss_pred EEEE-EcCCC--cEEEEEEEEEEcCC
Confidence 9999 67633 34456666666543
No 461
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.37 E-value=5.7e-12 Score=85.68 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=68.0
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 80 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKP---TAEVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDSGTYR 80 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecC---CCEEEEEECCEECCC----CCCEEEEECCCEEEEEEcCCCcccCEEEE
Confidence 45555566667788999999999999988 789999999998876 44443 34568999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEE
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
|.+ .|..+ .......|.|.
T Consensus 81 C~a-~N~~G--~~~~~~~l~V~ 99 (103)
T 3qp3_A 81 AVC-TNYKG--EASDYATLDVT 99 (103)
T ss_dssp EEE-EETTE--EEEEEEEEEEE
T ss_pred EEE-EeCCC--cEEEEEEEEEE
Confidence 999 67633 33455555554
No 462
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-12 Score=85.61 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=68.6
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
.|.+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+.. ...++. .....|.|.++..+|+|.|+|.+
T Consensus 8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 81 (100)
T 2edj_A 8 PPIILQGPANQTLAVDGTALLKCKATGDP---LPVISWLKEGFTFPG---RDPRATIQEQGTLQIKNLRISDTGTYTCVA 81 (100)
T ss_dssp SCEEEECCCCEEEESSSEEEECCEEECSS---CCEEEEEESSSEESS---SCSSCEECTTCCEEEESCCTTTCCEEEEEE
T ss_pred CCEEEeCcCCEEEcCCCcEEEEEEEEEcC---CCEEEEEECCEECCC---CCCCEEEcCCCEEEEccCCcccCEEEEEEE
Confidence 34455566666788999999999999988 789999999988763 123333 44567999999999999999999
Q ss_pred EcCCCCCCCCceeeeeEEEec
Q psy15235 186 IDPKSTNTTPLAQADFDVIMK 206 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~v~~~ 206 (323)
.|..+ .....+.|.|..+
T Consensus 82 -~n~~g--~~~~~~~l~V~~~ 99 (100)
T 2edj_A 82 -TSSSG--ETSWSAVLDVTES 99 (100)
T ss_dssp -ECSSC--CCBCCEEEEEESC
T ss_pred -EcCCC--CEEEEEEEEEecC
Confidence 77744 3456666666543
No 463
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=88.19 Aligned_cols=87 Identities=23% Similarity=0.349 Sum_probs=67.2
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+....+.+|+.+.|.|.+.+ |.+.+.|++++..+... .++.+.. .+ ....|.|.++..+|+|.|+|.|.|.
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~-- 85 (103)
T 2edf_A 14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS-QKYDVVC--EG--TMAMLVIRGASLKDAGEYTCEVEAS-- 85 (103)
T ss_dssp CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCS-SSEEEEE--ET--TEEEEEESSCCTTTCSEEEEECSSC--
T ss_pred cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC-CCEEEEE--CC--CEEEEEECCCCcccCEEEEEEEccC--
Confidence 344677889999999999987 78899999999887643 3444441 11 2568999999999999999999983
Q ss_pred CCCCCceeEEEEEEcceecCc
Q psy15235 291 RNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~~~ 311 (323)
...+.|.|.++|...
T Consensus 86 ------~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 86 ------KSTASLHVEEKASGP 100 (103)
T ss_dssp ------EEEEEEEECCCSSSS
T ss_pred ------CcEEEEEEeCCCCCC
Confidence 367778888776654
No 464
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-12 Score=87.17 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=62.7
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~ 294 (323)
..+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|.|.|..
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~----- 88 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES-ELLVVKM--DG--RKHRLILPEAKVQDSGEFECRTEGVS----- 88 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEETTEECCCB-TTBEEEE--ET--TEEEEEESSCCTTTCEEEEEECSSCC-----
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC-CCEEEEe--CC--CEEEEEECCCChhhCEEEEEEECCce-----
Confidence 578899999999999999888 9999999987644 3333331 01 35689999999999999999999875
Q ss_pred CceeEEEEEEcceecC
Q psy15235 295 PNEAFVYVRVKGKSFG 310 (323)
Q Consensus 295 ~~~~~~~l~v~~~~~~ 310 (323)
. .+.|.|.++|.+
T Consensus 89 -~--~~~l~V~~~P~p 101 (104)
T 2e6p_A 89 -A--FFGVTVQDPSGP 101 (104)
T ss_dssp -C--CEEEEEECCCCS
T ss_pred -E--EEEEEEcCCCCC
Confidence 2 445556655543
No 465
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-12 Score=85.58 Aligned_cols=91 Identities=14% Similarity=0.312 Sum_probs=66.9
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C 183 (323)
.|.+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+.... ..+.. .....|.|.++..+|+|.|+|
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 79 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLP---APDVSWYLNGRTVQSDD--LHKMIVSEKGLHSLIFEVVRASDAGAYAC 79 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEES---CCEEEEEETTEEECCCS--SSCEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeC---CCEEEEEECCEECcCCC--cEEEEEcCCCeEEEEECCCCcccCEEEEE
Confidence 44555566667788999999999999887 68999999998886511 11222 233589999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEEEe
Q psy15235 184 RLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
.+ .|..+ .....+.|.|..
T Consensus 80 ~a-~n~~g--~~~~~~~l~V~~ 98 (100)
T 2kdg_A 80 VA-KNRAG--EATFTVQLDVLA 98 (100)
T ss_dssp EE-EETTE--EEEEEEEEEEEC
T ss_pred EE-EcCCC--eEEEEEEEEEEe
Confidence 99 67733 345555666554
No 466
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.36 E-value=2.5e-12 Score=85.68 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=63.9
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccccccccCcEE--eceeEEEEeeeecCCCeeEEE
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSC 183 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C 183 (323)
|.+...+....+..|+.+.|.|.+.|.| .+.+.|++++ ..+.. ..+.. .....|.|.++..+|+|.|+|
T Consensus 3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 75 (93)
T 1wit_A 3 PKILTASRKIKIKAGFTHNLEVDFIGAP---DPTATWTVGDSGAALAP----ELLVDAKSSTTSIFFPSAKRADSGNYKL 75 (93)
T ss_dssp CEECCCCCEEEECTTBCCEEEEEEECCS---SCEEEEECSTTTCBCST----TSEEEEETTEEEEECTTBCGGGCEEEEE
T ss_pred CeEEcCCCceEEeCCCEEEEEEEEEEcC---CCEEEEEECCCCcccCC----cEEEEecCCEEEEEECCCChhcCEEEEE
Confidence 4444455666788999999999999988 7899999999 77754 22222 445789999999999999999
Q ss_pred EEEcCCCCCCCCceeeeeEE
Q psy15235 184 RLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~v 203 (323)
.| .|..+ .....+.|.|
T Consensus 76 ~a-~N~~G--~~~~~~~l~V 92 (93)
T 1wit_A 76 KV-KNELG--EDEAIFEVIV 92 (93)
T ss_dssp EE-EETTE--EEEEEEEEEE
T ss_pred EE-EcCCC--eEEEEEEEEE
Confidence 99 77743 3344444443
No 467
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.35 E-value=7.9e-12 Score=83.01 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=62.0
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
.+...+....+.+|+.++|.|.+.+ + .+.+.|+|+|.++.. +.++. .....|.|.+++.+|+|.|+|.
T Consensus 7 ~~~~~~~~~~v~~G~~v~l~C~v~~-~---~~~v~W~k~g~~i~~----~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~ 78 (93)
T 1waa_A 7 EVEKPLYGVEVFVGETAHFEIELSE-P---DVHGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMTGEVSFQ 78 (93)
T ss_dssp CEEECCCCEEEETTSCEEEEEEESS-S---SCCCEEEETTEECCC----BTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred EeeccCcceEEeCCCCEEEEEEECC-C---CCeEEEEECCEECcC----CCCEEEEEECCEEEEEECCCChhhCEEEEEE
Confidence 3444556667889999999999976 4 357999999999876 45554 3446899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEEE
Q psy15235 185 LIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v~ 204 (323)
+ .|. ..+..|.|.
T Consensus 79 a-~n~------~~sa~L~V~ 91 (93)
T 1waa_A 79 A-ANT------KSAANLKVK 91 (93)
T ss_dssp E-TTE------EEEEEEEEE
T ss_pred E-CCC------cEEEEEEEE
Confidence 9 664 245555554
No 468
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.35 E-value=2.4e-11 Score=91.52 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=88.1
Q ss_pred eeceEEecCCcEEEEEEec-cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcc
Q psy15235 28 FGDTEIMEGAPINISCILT-IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMN 104 (323)
Q Consensus 28 ~~~~~v~~G~~v~L~C~~~-~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~ 104 (323)
|....|.+|+++.|+|... +.+ .+.|.-.- ... . .+.......+.+.++++ ++.|.|.+.......
T Consensus 9 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l---~~~------~--~~~g~~~~~~~ls~vs~d~~~~~C~~~c~~~~~ 77 (196)
T 3bn3_B 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSL---RRN------G--TQRGLRWLARQLVDIREPETQPVCFFRCARRTL 77 (196)
T ss_dssp SSEEEEETTEEEEEEEEECCSSCSEEEEECSS---EEE------E--EEEETTEEEEEEEEECSSEECCEEEEEETTEEE
T ss_pred CCCcEEcCCCeEEEEEeCCCCCCCccEEEEcc---CCe------e--EccccCceEEEEEEEccCCCceEEEEECCCCce
Confidence 4556799999999999954 334 56775421 111 0 01112222356666655 566999987644333
Q ss_pred ceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc--EEeceeEEEEeee
Q psy15235 105 AITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR--LTQSKDSITIRKT 173 (323)
Q Consensus 105 ~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~ 173 (323)
.....+.+ .+...-+.+|+.++|.|.+.+..|.+..+|+|+|++..+......... .......+++...
T Consensus 78 ~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~ 157 (196)
T 3bn3_B 78 QARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLAR 157 (196)
T ss_dssp EEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECC
T ss_pred EEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeee
Confidence 22222222 121112667999999999999877544568999999887541100110 0022355666666
Q ss_pred ecCCCeeEEEEEEcCC
Q psy15235 174 TVDDAGQYSCRLIDPK 189 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~ 189 (323)
..+|...|+|+| .+.
T Consensus 158 r~D~g~~~sC~A-~l~ 172 (196)
T 3bn3_B 158 REDHGANFSCRA-ELD 172 (196)
T ss_dssp GGGTTCEEEEEE-EEE
T ss_pred eccCCCeEEEEE-Ecc
Confidence 555666999999 554
No 469
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.9e-13 Score=89.92 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=57.5
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC---eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG---RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
.+.+..+.+|+.+.|.|.+.+.| +.+.|++++..+..... ++.+.. .+ ....|.|.++..+|+|.|+|.|.|
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n 88 (101)
T 2edk_A 14 PLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKK--DG--KRHILIFSDVVQEDRGRYQVITNG 88 (101)
T ss_dssp CCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEE--CS--SEEEEECSSCCGGGCSBEEEECSS
T ss_pred cCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEE--CC--CEEEEEECCCChhhCEEEEEEEcC
Confidence 34457788999999999999888 99999999988765432 334431 11 356899999999999999999997
Q ss_pred c
Q psy15235 288 V 288 (323)
Q Consensus 288 ~ 288 (323)
.
T Consensus 89 ~ 89 (101)
T 2edk_A 89 G 89 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 470
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=5.7e-12 Score=84.99 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=66.8
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-EeceeEEEEeeeecCCCeeEEEE
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-TQSKDSITIRKTTVDDAGQYSCR 184 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~ 184 (323)
..|.+...+....+.+|+.++|.|.+.+.| .+.+.|++++..+.. .... ......|.|.++..+|+|.|+|.
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 82 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTP---VPRITWLLNGQPIQY----ARSTCEAGVAELHIQDALPEDHGTYTCL 82 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEES---CCCCEEEESSSBCSS----CCCEEETTEEEEEECSCCTTCCBCEEEE
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeC---CCeEEEEECCEECcc----cceEeeCCeEEEEECCCChhhCEEEEEE
Confidence 455566666777788999999999999988 689999999988765 2322 25567899999999999999999
Q ss_pred EEcCCCCCCCCceeeeeEE
Q psy15235 185 LIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~v 203 (323)
+ .|..+. ....+.|.|
T Consensus 83 a-~N~~g~--~~~~~~l~V 98 (99)
T 2yr3_A 83 A-ENALGQ--VSCSAWVTV 98 (99)
T ss_dssp E-ECSSCE--EEEECCEEE
T ss_pred E-EECCCe--EEEEEEEEE
Confidence 9 777433 344444443
No 471
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-11 Score=85.34 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=64.6
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~ 294 (323)
..+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|.|.|.
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~------ 90 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-PALLLQK--ED--TVRRLVLPAVQLEDSGEYLCEIDDE------ 90 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-TTBEEEE--CS--SEEEEEESSCCTTTCEEEEEESSSC------
T ss_pred EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-CCEEEEE--CC--CEEEEEECCCCcccCEEEEEEEecC------
Confidence 5677899999999995 788899999999887644 3444331 11 2468999999999999999999982
Q ss_pred CceeEEEEEEcceecCcC
Q psy15235 295 PNEAFVYVRVKGKSFGYD 312 (323)
Q Consensus 295 ~~~~~~~l~v~~~~~~~~ 312 (323)
...+.|.|..+|....
T Consensus 91 --~~~~~l~V~~~p~~~~ 106 (113)
T 2cpc_A 91 --SASFTVTVTEPPVRII 106 (113)
T ss_dssp --EEEEEEEEECCCCCCC
T ss_pred --cEEEEEEEecCCchhc
Confidence 3567777877775544
No 472
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.34 E-value=1.6e-11 Score=82.85 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=63.5
Q ss_pred eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294 (323)
Q Consensus 215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~ 294 (323)
..+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.+.. .+ ....|.|.++..+|+|.|+|.| |.
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a----g~--- 84 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-TKYIFEH--KG--CQRILFINNCQMTDDSEYYVTA----GD--- 84 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-TTEEEEE--ET--TEEEEEEEEECTTTCCEEEEEE----TT---
T ss_pred cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-CCEEEEe--cC--CEEEEEEcCCCcCcCEEEEEEE----CC---
Confidence 4677999999999998 788999999999887643 3444431 11 2458999999999999999999 33
Q ss_pred CceeEEEEEEcceec
Q psy15235 295 PNEAFVYVRVKGKSF 309 (323)
Q Consensus 295 ~~~~~~~l~v~~~~~ 309 (323)
....+.|.|.++|.
T Consensus 85 -~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 85 -EKCSTELFVRSGPS 98 (100)
T ss_dssp -EEEEEEEEECCSCC
T ss_pred -ceEEEEEEEecCCC
Confidence 66778888887653
No 473
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=83.27 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=66.4
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEP---RPTAIWTKDGKAITQ----GGKYKLSEDKGGFFLEIHKTDTSDSGLYT 78 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEES---CCEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecC---CCEEEEEECCEECcC----CCCEEEEEeCCEEEEEECCCCcccCEEEE
Confidence 45555566667788999999999999988 689999999998876 45554 23457999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEE
Q psy15235 183 CRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v 203 (323)
|.+ .|..+. ....+.|.|
T Consensus 79 C~a-~n~~g~--~~~~~~l~V 96 (99)
T 3puc_A 79 CTV-KNSAGS--VSSSCKLTI 96 (99)
T ss_dssp EEE-EETTEE--EEEEEEEEE
T ss_pred EEE-EeCCCc--EeEEEEEEE
Confidence 999 676332 344444444
No 474
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.34 E-value=7.4e-11 Score=92.36 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=91.6
Q ss_pred EEeeceEEecCCcEEEEEEec-c---CceEEEEEc--Cccceee---------ccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235 26 TYFGDTEIMEGAPINISCILT-I---FEQVKWQLN--GRNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL- 89 (323)
Q Consensus 26 ~~~~~~~v~~G~~v~L~C~~~-~---~~~v~W~~~--g~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~- 89 (323)
+.+..+.+.+|++|+|.|.+. . ...+.|+|. |+.+..- ....+.....+...+.+.|.|.+++.
T Consensus 6 q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 85 (229)
T 1hxm_A 6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER 85 (229)
T ss_dssp ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred eCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHh
Confidence 345678899999999999955 2 357999984 3222110 01222323333346677888888764
Q ss_pred -CcceEEEeeccCC-----c-------cceeeeee----eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235 90 -ESGYVQSSLFIPR-----M-------NAITGNYD----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT 152 (323)
Q Consensus 90 -~G~Y~C~~~~~~~-----~-------~~~~~~~~----~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~ 152 (323)
+|.|+|.+.+... . ..+.+.-. ..|.+.+.. ..++|.|.+.+..|. ...|.|+++ ..+.
T Consensus 86 Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~--~~~~L~C~~~g~~P~-~i~v~W~~~-~~~~ 161 (229)
T 1hxm_A 86 DEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK--NGTNVACLVKEFYPK-DIRINLVSS-KKIT 161 (229)
T ss_dssp GCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE--ETTEEEEEEESCBSS-CCEEEEECS-SEEE
T ss_pred HCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC--CCCeEEEEEEEEeCC-CEEEEEecC-CEEe
Confidence 9999999976521 1 01111110 133333333 345999999987653 359999999 6654
Q ss_pred ccccccCcEE-eceeEEEEeeee-cCCCeeEEEEEEcCC
Q psy15235 153 EATELSGRLT-QSKDSITIRKTT-VDDAGQYSCRLIDPK 189 (323)
Q Consensus 153 ~~~~~~~~~~-~~~~~l~i~~~~-~~d~G~y~C~~~~~~ 189 (323)
.. ..... .....+.+.... .++.|.|+|.+ .+.
T Consensus 162 ~~---~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V-~h~ 196 (229)
T 1hxm_A 162 EF---DPAIVISPSGKYNAVKLGKYEDSNSVTCSV-QHD 196 (229)
T ss_dssp EC---CCEEEECTTSSEEEEEEEEETTTTTCEEEE-EET
T ss_pred cC---ccceEECCCCcEEEEECcccCCCCcEEEEE-EeC
Confidence 31 11111 222334443333 36789999999 665
No 475
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.34 E-value=7.5e-12 Score=87.01 Aligned_cols=94 Identities=17% Similarity=0.353 Sum_probs=71.1
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ 180 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~ 180 (323)
..+.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+... ..++. .....|.|.+++.+|+|.
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIP---PPKLFWKRNNEMVQFN---TDRISLYQDNTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBS---CCEEEEEETTEECCCC---BTTEEEEECTTCEEEEEEEEECGGGCEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccC---CCEEEEEECCEECcCC---CCeEEEEeCCCCeEEEEECCCCcccCEE
Confidence 345555577777899999999999999988 6899999999887641 23443 123389999999999999
Q ss_pred EEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235 181 YSCRLIDPKSTNTTPLAQADFDVIMKPT 208 (323)
Q Consensus 181 y~C~~~~~~~~~~~~~~~~~l~v~~~p~ 208 (323)
|+|.+ .|..+ .....+.|.|..+|.
T Consensus 88 Y~C~a-~N~~G--~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 88 YTVSA-VNEAG--VTTCNTRLDVTARPN 112 (116)
T ss_dssp EEEEE-EETTE--EEEEEEEEEEECCSC
T ss_pred EEEEE-EcCCC--eEEEEEEEEEeCCCC
Confidence 99999 77643 345666777776553
No 476
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.33 E-value=7.2e-12 Score=85.17 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=56.3
Q ss_pred eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
...+.+|+++.|.|.+ +.|.+.+.|+++|..+.....++.+.. .+ ....|+|.++..+|+|.|+|.|.|..
T Consensus 25 ~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~~~~ 95 (104)
T 1pd6_A 25 AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES--IG--AKRTLTISQCSLADDAAYQCVVGGEK 95 (104)
T ss_dssp EEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE--ET--TEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred cEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEe--cC--CEEEEEECCCCcccCEEEEEEECCCc
Confidence 3678899999999999 688889999999998875534555441 11 24589999999999999999995433
No 477
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.33 E-value=1.5e-11 Score=82.92 Aligned_cols=89 Identities=13% Similarity=0.251 Sum_probs=65.9
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS 182 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~ 182 (323)
.|.+...+....+..|+.++|.|.+.+.| .+.+.|++++..+... ..++. .....|.|.++..+|+|.|+
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEP---KPVVSWLRNRQPVRPD---QRRFAEEAEGGLCRLRILAAERGDAGFYT 78 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCCB---TTEEEEECGGGEEEEEESSCCGGGCEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcC---CCEEEEEECCEECCCC---CCEEEEECCCCEEEEEEccCCcCCCEEEE
Confidence 45555666667788999999999999988 6899999999888651 12222 23347999999999999999
Q ss_pred EEEEcCCCCCCCCceeeeeEEE
Q psy15235 183 CRLIDPKSTNTTPLAQADFDVI 204 (323)
Q Consensus 183 C~~~~~~~~~~~~~~~~~l~v~ 204 (323)
|.+ .|..+. ....+.|.|.
T Consensus 79 C~a-~N~~g~--~~~~~~l~V~ 97 (99)
T 1u2h_A 79 CKA-VNEYGA--RQCEARLEVR 97 (99)
T ss_dssp EEE-EETTEE--EEEEEEEEEE
T ss_pred EEE-EECCCc--eeEEEEEEEE
Confidence 999 676332 3444455443
No 478
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.33 E-value=7.8e-12 Score=87.07 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=66.2
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCC--CCCCceEEEEECCee-ccccccccCcEE----------eceeEEEEeeee
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKS-ITEATELSGRLT----------QSKDSITIRKTT 174 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~-~~~~~~~~~~~~----------~~~~~l~i~~~~ 174 (323)
+.|...|+...+.+|++++|.|.+.+.+ | .+.|.|||+... +.. ....++. .....|+|.++.
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p--~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 83 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLR--KPTIKWFKGKWMDLAS--KAGKHLQLKETFERHSRVYTFEMQIIKAK 83 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSS--CCEEEEEESSSCCHHH--HTTSSEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCC--CCcEEEeeCcCcccCC--CCCceEEEccccccccccceEEEEEccCC
Confidence 4455577778899999999999998751 3 789999997421 111 0011221 135789999999
Q ss_pred cCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIM 205 (323)
Q Consensus 175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 205 (323)
..|+|.|+|++ .|.. ...+..+.|+|..
T Consensus 84 ~~DaG~Y~Cev-sn~~--g~~~~~~~L~V~~ 111 (126)
T 2dav_A 84 DNFAGNYRCEV-TYKD--KFDSCSFDLEVHE 111 (126)
T ss_dssp TTSCEEEEEEE-ECSS--CEEEECCEEEEEC
T ss_pred cccCEEEEEEE-EeCC--CcEEEEEEEEEEe
Confidence 99999999999 7873 4567788888887
No 479
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=99.33 E-value=3.4e-10 Score=86.33 Aligned_cols=167 Identities=19% Similarity=0.271 Sum_probs=104.2
Q ss_pred ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-------------cccccCcEE------eceeEEEEeee
Q psy15235 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-------------ATELSGRLT------QSKDSITIRKT 173 (323)
Q Consensus 115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~ 173 (323)
...++.+|.++.|.|.+.|+.-. ...+.|+| .|+.+.. .+..++|+. .+...|.+.++
T Consensus 8 G~~lvkPG~Sl~lSC~~SG~tf~-~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL 86 (254)
T 4f9p_D 8 GAEVVRPGTSVKVSCKASGYAFT-SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSL 86 (254)
T ss_dssp CCEEECTTCCEEEEEEEESSCGG-GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceECCCCCeEEEEEEeCCChh-hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccC
Confidence 34567889999999999886521 34688987 3432211 234456665 34567899999
Q ss_pred ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cc-----------------eee-eeceeEEeeCCeEEEEEEEec
Q psy15235 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KP-----------------TAK-LVETLTVIEGEKLRLECLVVG 231 (323)
Q Consensus 174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p-----------------~~~-~~~~~~~~~g~~~~l~C~~~g 231 (323)
+.+|++.|.|.. ...... .-.-..++|.. .| .+. .|....+.+|+.++|+|.+..
T Consensus 87 ~~eDTAvYYCAr-~~~~d~--WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~ 163 (254)
T 4f9p_D 87 TSDDSAVYFCAR-SDYGAY--WGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQ 163 (254)
T ss_dssp CGGGCEEEECEE-SSSCCE--ECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESS
T ss_pred CCCCCEEEEEEe-cCCCCC--cCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccC
Confidence 999999999976 433211 11112333322 01 111 344567889999999999965
Q ss_pred CCCCcEEEEE--CCee---ee-c-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 232 SPPPTVEWRI--GNDT---YF-R-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 232 ~p~~~~~W~~--~~~~---~~-~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.-...+.||+ .|+. +. . -..|+..+. .....+|+|..++.+|.+.|.|...+..
T Consensus 164 ~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~----sgt~ftLtIs~lq~eD~A~YYC~q~~~~ 230 (254)
T 4f9p_D 164 SISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSG----SGTEFTLSINSVETEDFGIYFCQQSNSW 230 (254)
T ss_dssp CCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEEC----CTTEEEEEEESCCTTCCEEEEEEECSSS
T ss_pred cccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeee----eCCEEEEEECCCCHHHCEEEEEeecCCC
Confidence 5444699997 2322 11 0 113444331 1135689999999999999999766543
No 480
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-12 Score=87.25 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=66.2
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+..+.+|+.++|.|.+.+.|.+ .+.|+++|..+... .++.+.. ++ ...+|.|.+++.+|+|.|+|.|.|
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-~r~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~~-- 86 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-SRFQATR--QG--RKYILVVREAAPSDAGEVVFSVRG-- 86 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-SSCEEEE--ET--TEEEEEECSCCTTTCSCEEEEETT--
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-CCEEEEE--cC--CEEEEEECCCCHHHCEEEEEEECC--
Confidence 4456788999999999999888754 79999999888644 3444441 11 246899999999999999998854
Q ss_pred cCCCCCceeEEEEEEcceecC
Q psy15235 290 TRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 290 g~~~~~~~~~~~l~v~~~~~~ 310 (323)
....+.|.|.++|..
T Consensus 87 ------~~~~a~L~V~~~p~~ 101 (104)
T 2eny_A 87 ------LTSKASLIVRERSGP 101 (104)
T ss_dssp ------EEEEECEEEECCCSS
T ss_pred ------eeEEEEEEEeCCCcC
Confidence 346777888776643
No 481
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.33 E-value=5.4e-12 Score=87.06 Aligned_cols=97 Identities=19% Similarity=0.331 Sum_probs=65.3
Q ss_pred ecceee-eeceeEEeeCCeEEEEEEEecC--CCCcEEEEECCeeeeccCCe--eeeecCC-CCCCcceeEEEeecCcCCC
Q psy15235 205 MKPTAK-LVETLTVIEGEKLRLECLVVGS--PPPTVEWRIGNDTYFRSQGR--IKLSEHP-EKGTANSVLQIDEATMADR 278 (323)
Q Consensus 205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~L~i~~v~~~d~ 278 (323)
.+|.+. .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+...... ....... ........|.|.+++.+|+
T Consensus 9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence 355554 3445678899999999999865 45789999999887543211 1111000 0001247899999999999
Q ss_pred eEEEEEEeecccCCCCCceeEEEEEE
Q psy15235 279 GNYYCHGNNVATRNSQPNEAFVYVRV 304 (323)
Q Consensus 279 G~y~C~a~n~~g~~~~~~~~~~~l~v 304 (323)
|.|+|.|.|..|. ..+..+.|.|
T Consensus 89 G~Y~C~a~n~~g~---~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGS---SYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEE---EECCCEEEEE
T ss_pred CeEEEEEEeCCCc---EEEeEEEEEe
Confidence 9999999999864 1335555554
No 482
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=82.04 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=62.9
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+...|....+.+|+.++|.|.+.+.| .+.+.|++++..+.. .....|.|.++..+|+|.|+|.+ .|
T Consensus 5 ~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a-~n 71 (91)
T 3bfo_A 5 QICVEPTSQKLMPGSTLVLQCVAVGSP---IPHYQWFKNELPLTH---------ETKKLYMVPYVDLEHQGTYWCHV-YN 71 (91)
T ss_dssp EEEECCCCEEECTTSCEEEECEEECSS---CCEEEEEETTEECTT---------CCSSEEEESSCCGGGCEEEEEEE-EC
T ss_pred EEEECCCccEecCCCcEEEEEEeccCC---CCEEEEEcCCeeCCc---------CCCCeEEECCCCHHhCEEEEEEE-Ec
Confidence 344466667788999999999999988 689999999988876 34568999999999999999999 67
Q ss_pred CCCCCCCceeeeeEE
Q psy15235 189 KSTNTTPLAQADFDV 203 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v 203 (323)
..+. ..+..+.|.|
T Consensus 72 ~~g~-~~s~~~~l~V 85 (91)
T 3bfo_A 72 DRDS-QDSKKVEIII 85 (91)
T ss_dssp SSCE-EECCCEEEEE
T ss_pred CCCC-EEeeeEEEEE
Confidence 6432 1233444444
No 483
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=3.7e-12 Score=87.11 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=58.2
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 289 (323)
.+.+..+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+.. .+ ....|.|.++..+|+|.|+|.|.|..
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~ 86 (106)
T 2dlt_A 14 DIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS-KRITISH--VG--RFHKLVIDDVRPEDEGDYTFVPDGYA 86 (106)
T ss_dssp CCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC-SSCEEEE--ET--TEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred CCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC-CCEEEEE--eC--CEEEEEECCCCcCCCEEEEEEEccCC
Confidence 3446778999999999999988877 9999999887643 3444431 01 24689999999999999999999984
No 484
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.30 E-value=6.4e-12 Score=86.22 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=61.7
Q ss_pred eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEE
Q psy15235 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLI 186 (323)
Q Consensus 109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~ 186 (323)
.+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+|.+
T Consensus 12 ~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a- 83 (108)
T 3kvq_A 12 TITGNLENQTTSIGESIEVSCTASGNP---PPQIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEGLYTCQA- 83 (108)
T ss_dssp CCBSCCCCEEEETTCCEEEECBCC-------CCEEEEESSSBCCC----BTTEEEETTTTEEEECSCCGGGCEEEEEEE-
T ss_pred ceecCCCCeEEeCCCeEEEEEECcCcC---CCeEEEEECCeEccc----CCCeEEeCCCcEEEEeecCcccCEEEEEEE-
Confidence 333355566788999999999999887 679999999988765 33333 45678999999999999999999
Q ss_pred cCCCCCCCCceeeeeEEEecc
Q psy15235 187 DPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 187 ~~~~~~~~~~~~~~l~v~~~p 207 (323)
.|..+ .....+.|.|..+|
T Consensus 84 ~n~~g--~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 84 CSVLG--CAKVEAFFIIEGAQ 102 (108)
T ss_dssp C------CEEEEEEEEEEC--
T ss_pred EeCCC--ceEEEEEEEEeCCC
Confidence 77733 35556666666544
No 485
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.30 E-value=3.8e-12 Score=91.44 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=62.5
Q ss_pred ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc---------CCeeeeecCCCCCCcceeEEEeecC
Q psy15235 205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS---------QGRIKLSEHPEKGTANSVLQIDEAT 274 (323)
Q Consensus 205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~L~i~~v~ 274 (323)
.+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+.. .........|.|.+++
T Consensus 20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~ 98 (137)
T 3qr2_A 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHA-TYHQHAASTISIDTLV 98 (137)
T ss_dssp -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEE-EESSSEEEEEEECSCC
T ss_pred CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEec-ccccccceEEEECCCC
Confidence 355444 455677889999999999999999999999977654321 11222210 0011135789999999
Q ss_pred cCCCeEEEEEEeecccC
Q psy15235 275 MADRGNYYCHGNNVATR 291 (323)
Q Consensus 275 ~~d~G~y~C~a~n~~g~ 291 (323)
.+|+|.|+|.|.|..|.
T Consensus 99 ~~D~G~Y~C~a~N~~G~ 115 (137)
T 3qr2_A 99 EEDTGTYECRASNDPDR 115 (137)
T ss_dssp GGGCEEEEEEEECCTTS
T ss_pred cccCEEEEEEEEecCCc
Confidence 99999999999999976
No 486
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.30 E-value=8.2e-12 Score=84.87 Aligned_cols=87 Identities=24% Similarity=0.404 Sum_probs=65.7
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+....+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|. .|
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~----~g 83 (103)
T 2e7b_A 14 ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG-DKYSLRQ--EG--AMLELVVRNLRPQDSGRYSCS----FG 83 (103)
T ss_dssp CCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS-SSEEEEE--CS--SEEEEEECSCCTTTCCCEEEE----CS
T ss_pred cCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC-CcEEEEE--cC--CEEEEEEccCCcccCEEEEEE----EC
Confidence 3446778899999999999999888 9999999887533 4555542 11 245799999999999999998 43
Q ss_pred CCCCCceeEEEEEEcceecCc
Q psy15235 291 RNSQPNEAFVYVRVKGKSFGY 311 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~~~ 311 (323)
. ....+.|.|.+.|..+
T Consensus 84 ~----~~~~~~l~V~~~p~~~ 100 (103)
T 2e7b_A 84 D----QTTSATLTVTALPSGP 100 (103)
T ss_dssp S----CBCCBCEEEECCCCCS
T ss_pred C----cEEEEEEEEEeccccc
Confidence 3 4556677777766543
No 487
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.2e-12 Score=87.18 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=69.6
Q ss_pred eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEE
Q psy15235 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRL 185 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~ 185 (323)
.|.+...+....+..|+.++|.|.+.+.+ .+.+.|++++..+.. ...++. .....|.|.++..+|+|.|+|.+
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSP---VPTILWRKDGVLVST---QDSRIKQLENGVLQIRYAKLGDTGRYTCIA 81 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSS---CCEEEEEESSSBCCT---TSTTEEEEETTEEEEESCCGGGCCCEEEEE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecC---CCEEEEEECCEECcC---CCCeEEEccCCEEEEccCCcCCCEEEEEEE
Confidence 34444456667788999999999999888 789999999988753 133443 44568999999999999999999
Q ss_pred EcCCCCCCCCceeeeeEEEecc
Q psy15235 186 IDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~l~v~~~p 207 (323)
.|..+. ....+.|.|..++
T Consensus 82 -~n~~g~--~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 82 -STPSGE--ATWSAYIEVQEFG 100 (118)
T ss_dssp -ECSSCE--EEEECCEEEECCS
T ss_pred -EcCCCc--EEEEEEEEEEeCC
Confidence 777433 4556677777654
No 488
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.30 E-value=2.6e-10 Score=85.05 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
+.+.|+..++..|+++.|.|.+.... ...+.|-.. +. +..+. ..-..+.+.++. |+|.|.|.+..
T Consensus 5 v~v~P~~~~V~~G~S~~l~Cs~~c~~---p~~~glet~---l~-----~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c 71 (192)
T 1zxq_A 5 VHVRPKKLAVEPKGSLEVNCSTTCNQ---PEVGGLETS---LN-----KILLDEQAQWKHYLVSNIS--HDTVLQCHFTC 71 (192)
T ss_dssp EEEESSEEEECTTEEEEEEEEESCSS---CSEEEEECS---SE-----EEEEEEETTEEEEEEEEEC--SCEEEEEEEEE
T ss_pred EEEeCCCcEEeCCCcEEEEEECCCCC---ccccccccc---cC-----ceEEcCCCCeEEEEEeccc--cCCeeEEEEEC
Confidence 44566777789999999999986433 223455321 11 01111 123468999998 78999999943
Q ss_pred CCCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEec-CCCCc--EEEEECCeeeeccCCeeeeecCCCCC
Q psy15235 188 PKSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVG-SPPPT--VEWRIGNDTYFRSQGRIKLSEHPEKG 262 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
+. ......+.|+|..+|... +.. ...+.+|+.++|.|.+.+ .|... +.|++++..+.... +... .....
T Consensus 72 ~~---~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~--f~~~-~~~~~ 145 (192)
T 1zxq_A 72 SG---KQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET--FGKA-APAPQ 145 (192)
T ss_dssp TT---EEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEE--CCSS-TTCTT
T ss_pred CC---cceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecc--cccc-cCcCc
Confidence 32 345678888888877333 332 346889999999999964 56554 89999998875321 1100 01111
Q ss_pred CcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235 263 TANSVLQIDEATMADRG-NYYCHGNNVA 289 (323)
Q Consensus 263 ~~~~~L~i~~v~~~d~G-~y~C~a~n~~ 289 (323)
....++++ .+..+|.| +|+|.|.-..
T Consensus 146 ~~tv~~~~-~~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 146 EATATFNS-TADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp CEEEEEEE-ECCGGGGGCEEEEEEEEEC
T ss_pred ceEEEEEE-ecchhhCCceEEEEEEecC
Confidence 11223333 46666777 8999999877
No 489
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.30 E-value=4.8e-12 Score=86.45 Aligned_cols=88 Identities=15% Similarity=0.309 Sum_probs=68.8
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY 181 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y 181 (323)
..+.+...|....+.+|+++.|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEP---VPTVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDEGNY 85 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSS---CCBCCBCSSSSCCTT----CSSEEEEECSSEEEEEECCCCSSCCSEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcC---CCEEEEEECCEECCC----CCCEEEEECCCEEEEEECcCCchhCEEE
Confidence 344555577777889999999999999988 789999999988866 45554 2357899999999999999
Q ss_pred EEEEEcCCCCCCCCceeeeeEE
Q psy15235 182 SCRLIDPKSTNTTPLAQADFDV 203 (323)
Q Consensus 182 ~C~~~~~~~~~~~~~~~~~l~v 203 (323)
+|.+ .|..+. ....+.|.|
T Consensus 86 ~C~a-~N~~G~--~~~~~~l~V 104 (106)
T 1nct_A 86 SVVV-ENSEGK--QEAEFTLTI 104 (106)
T ss_dssp EECC-BCSSCB--CCEEEEEEE
T ss_pred EEEE-EeCCCe--EEEEEEEEE
Confidence 9999 787433 455555555
No 490
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=86.14 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=63.6
Q ss_pred eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
+.+...|....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. .....|.|.+++.+|+|.|+|.+ .
T Consensus 11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a-~ 77 (96)
T 2ens_A 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQP---SPQIHWMKDGVPLPL---------PPSPVLILPEIGPQDQGTYSCVA-T 77 (96)
T ss_dssp CCCEEESTTSEECTTCEEEEECCCSSCS---SCCCCCEESSSBCSS---------CCCSEEEEESCCTTTCEEEECEE-C
T ss_pred CEEEECCCCCEEcCCCeEEEEEEEccCC---CCEEEEEECCEECcC---------CCCCEEEECCCCcccCEEEEEEE-E
Confidence 3444455556688999999999999887 679999999988865 34678999999999999999999 7
Q ss_pred CCCCCCCCceeeeeEE
Q psy15235 188 PKSTNTTPLAQADFDV 203 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v 203 (323)
|..+....+..+.|.|
T Consensus 78 n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 78 HSSHGPQESRAVSISI 93 (96)
T ss_dssp CSSCCCEECCCEEEEE
T ss_pred eCCCCcEEEEEEEEEE
Confidence 7533333444445544
No 491
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.30 E-value=2.7e-11 Score=80.92 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=61.0
Q ss_pred eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR 291 (323)
Q Consensus 212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 291 (323)
+....+.+|+.+.|.|.+ +.|.+.+.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|.| |.
T Consensus 15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a----g~ 84 (95)
T 2k1m_A 15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS-NKYGLAT--EG--TRHTLTVREVGPADQGSYAVIA----GS 84 (95)
T ss_dssp CCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS-TTCEEEE--ET--TEEEEEESSCCTTCCSEEEEEE----TT
T ss_pred CCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC-CcEEEEE--cC--CEEEEEEcCCCcccCEEEEEEE----CC
Confidence 446678899999999999 7888899999999888643 3444431 11 2468999999999999999999 33
Q ss_pred CCCCceeEEEEEEc
Q psy15235 292 NSQPNEAFVYVRVK 305 (323)
Q Consensus 292 ~~~~~~~~~~l~v~ 305 (323)
....+.|.|.
T Consensus 85 ----~~~~~~l~V~ 94 (95)
T 2k1m_A 85 ----SKVKFDLKVI 94 (95)
T ss_dssp ----EEEEEEEEEE
T ss_pred ----ceEEEEEEEe
Confidence 4455666664
No 492
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.29 E-value=3.6e-11 Score=80.66 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=62.2
Q ss_pred CCceeEEecCCcEEEEEEeecC-CCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID 187 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~ 187 (323)
.+....+.+|+.++|.|.+.+. + .+.+.|++++..+.. ..++. .....|.|.++..+|+|.|+|.+ .
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 78 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQ---STQVTWYFGVRQLEN----SEKYEITYEDGVAILYVKDITKLDDGTYRCKV-V 78 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCT---TCEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGCEEEEEEE-E
T ss_pred cCcCEEEcCCCcEEEEEEEeccCC---CCEEEEEECCEECcC----CCCEEEEEcCCeEEEEEecCChhhCeEEEEEE-E
Confidence 4556678899999999999997 5 689999999998876 44543 33458999999999999999999 7
Q ss_pred CCCCCCCCceeeeeEE
Q psy15235 188 PKSTNTTPLAQADFDV 203 (323)
Q Consensus 188 ~~~~~~~~~~~~~l~v 203 (323)
|..+ .....+.|.|
T Consensus 79 n~~g--~~~~~~~l~V 92 (97)
T 2bk8_A 79 NDYG--EDSSYAELFV 92 (97)
T ss_dssp CSSC--EEEEEEEEEE
T ss_pred CCCC--eEeEEEEEEE
Confidence 7733 2333444444
No 493
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=99.29 E-value=2e-10 Score=88.09 Aligned_cols=168 Identities=17% Similarity=0.291 Sum_probs=101.9
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA 178 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~ 178 (323)
.|....+..|++++|.|.+...- ...+.||+ .|+... . .....+||. ....+|+|.+++.+|+
T Consensus 7 sP~sls~s~G~~vtisC~~S~~i---~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~ 83 (259)
T 4f9l_D 7 SPSSLSASLGDTITITCHASQNI---NLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDI 83 (259)
T ss_dssp ECSBCCBCTTCEEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred cCCeEEECCCCCEEEEEEcCCCC---CCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhC
Confidence 35555677899999999876544 34589997 333211 1 011134565 3456899999999999
Q ss_pred eeEEEEEEcCCCCCCCCceeeeeEEEe---cc--------------------eeeeeceeEEeeCCeEEEEEEEecCCC-
Q psy15235 179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KP--------------------TAKLVETLTVIEGEKLRLECLVVGSPP- 234 (323)
Q Consensus 179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p--------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~- 234 (323)
+.|.|.. ......... .-..|+|.. .| .+.......+++|+++.|.|.+.|..-
T Consensus 84 A~YyC~~-~~~~~~tFG-~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs 161 (259)
T 4f9l_D 84 ATYYCQQ-GHSYPYTFG-GGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFT 161 (259)
T ss_dssp EEEEEEE-CSSSSCCBC-CCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGG
T ss_pred EEEEEee-cCCCCCCcc-CCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcc
Confidence 9999987 333111000 001122110 01 011222455888999999999988742
Q ss_pred -CcEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235 235 -PTVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287 (323)
Q Consensus 235 -~~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 287 (323)
-.+.|.| .|+.++ .-.+|++++. ++......|.+++++.+|...|.|....
T Consensus 162 ~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISr--D~s~nt~yLqm~sL~~eDTAvYYCAr~~ 231 (259)
T 4f9l_D 162 RYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTV--DKSSRTTYIQLSSLTSEDSAVYYCSRED 231 (259)
T ss_dssp GSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEE--EccccEEEEEECCCChHHCEEEEEEEeC
Confidence 3588887 233221 1134666663 2333466799999999999999996543
No 494
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=5.1e-12 Score=106.24 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=62.5
Q ss_pred CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235 114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193 (323)
Q Consensus 114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 193 (323)
+....+.+|+.+.|.|.+.+ + .+.|.|++++..+........++......|.|.+++.+|+|.|+|.| .|. .+
T Consensus 253 ~~~v~v~~G~~~~l~C~~~g-p---~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~--~g 325 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDTKQ-Q---GMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYA-MGE--TF 325 (361)
T ss_dssp CCCCEEETTCCEEECCCCSS-T---TCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEE-ECS--SC
T ss_pred ccCceecCCCeEEEEeEeeC-C---CCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEE-ecC--CC
Confidence 34456889999999999988 6 67999999776554322222344434567999999999999999999 777 33
Q ss_pred CCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235 194 TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238 (323)
Q Consensus 194 ~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 238 (323)
..+..+.+.|...+ ..|+.++|.|.+.|.|+|.++
T Consensus 326 ~~~~~~~l~V~~~~----------~~g~~~~l~C~~~g~P~P~i~ 360 (361)
T 2xot_A 326 NETLSVELKVYNFT----------LHGHHDTLNAAADPWSHPQFE 360 (361)
T ss_dssp EEEEEEEEEEESSC----------CC-------------------
T ss_pred ccEEEEEEEEEeee----------ccCCceEEEEEeCCCCCCccc
Confidence 34455555554322 578899999999999998763
No 495
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.29 E-value=6.3e-12 Score=82.97 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=51.1
Q ss_pred EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK 189 (323)
Q Consensus 119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 189 (323)
+.+|+.+.|.|.+.+ + .+.+.|+|||.++.. +.++. .....|.|.++..+|+|.|+|.| .|.
T Consensus 18 ~~~g~~v~l~C~v~~-p---~~~v~W~k~g~~i~~----~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~ 83 (91)
T 2lvc_A 18 AITSECVMLACEVDR-E---DAPVRWYKDGQEVEE----SDFVVLENEGPHRRLVLPATQPSDGGEFQCVA-GDE 83 (91)
T ss_dssp CCTTCCEEEEEECSC-T---TSCCEEEETTSCCCC----CSSCEEEEETTEEEEEESSCCGGGCSEEEEEC-SSC
T ss_pred EECCCcEEEEEEECC-C---CcEEEEEECCEEeee----eeeeeEEecCCeEEEEeCCCChhhcEEEEEEE-cce
Confidence 457999999999865 5 568999999999877 44443 44568999999999999999999 654
No 496
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5e-12 Score=86.00 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=65.1
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP 188 (323)
Q Consensus 113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~ 188 (323)
.+....+.+|+.++|.|.+.+.++ .+.+.|+|+|..+.. ..++. .....|.|.+++.+|+|.|+|.+ .+
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~--~~~v~W~k~g~~i~~----~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~ 86 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESA--SDPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDAGEVVFSV-RG 86 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCC--SSCBCCBSSSSBCSB----CSSCEEEEETTEEEEEECSCCTTTCSCEEEEE-TT
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCC--CceeEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE-CC
Confidence 555667889999999999988763 347999999998876 44443 34568999999999999999999 55
Q ss_pred CCCCCCCceeeeeEEEecce
Q psy15235 189 KSTNTTPLAQADFDVIMKPT 208 (323)
Q Consensus 189 ~~~~~~~~~~~~l~v~~~p~ 208 (323)
. ..+..|.|..+|.
T Consensus 87 ~------~~~a~L~V~~~p~ 100 (104)
T 2eny_A 87 L------TSKASLIVRERSG 100 (104)
T ss_dssp E------EEEECEEEECCCS
T ss_pred e------eEEEEEEEeCCCc
Confidence 3 4677788877663
No 497
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=82.74 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=64.8
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 290 (323)
.+.+..+.+|+.+.|.|. .+.|.+.+.|++++..+... .++.+.. .+ ....|.|.+++.+|+|.|+|. .|
T Consensus 14 ~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~----~g 83 (103)
T 2dku_A 14 ELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS-GKHQPSQ--EG--LTLRLTISALEKADSDTYTCD----IG 83 (103)
T ss_dssp CCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS-SSEEEEE--ET--TEEEEEEESCCTTTCSEEEEE----CS
T ss_pred cCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC-CeEEEEe--CC--CEEEEEECCCCcccCEEEEEE----eC
Confidence 345677899999999999 47888999999999887643 3444431 01 245899999999999999998 43
Q ss_pred CCCCCceeEEEEEEcceecC
Q psy15235 291 RNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 291 ~~~~~~~~~~~l~v~~~~~~ 310 (323)
. ....+.|.|.+.|.+
T Consensus 84 ~----~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 84 Q----AQSRAQLLVQGRRSG 99 (103)
T ss_dssp S----CBCCEEEEEECSCCC
T ss_pred C----ceEEEEEEEeCccCC
Confidence 3 556677778776654
No 498
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.29 E-value=2.4e-11 Score=89.02 Aligned_cols=95 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ 180 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~ 180 (323)
..|.+...+....+..|+.++|.|.+.+.| .+.+.|++++..+.. ..++. .....|.|.++...|+|.
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 112 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYP---DPEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDDAK 112 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECCEECCC----CCcEEEEECCCCeEEEEECCCChhcCEE
Confidence 345555566667788999999999999988 789999999998876 44444 234689999999999999
Q ss_pred EEEEEEcCCCCCCCCceeeeeEEEecceee
Q psy15235 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAK 210 (323)
Q Consensus 181 y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~ 210 (323)
|+|.+ .|..+ .....+.|.|..+|.+.
T Consensus 113 Y~C~a-~N~~G--~~~~~~~l~V~~~p~~~ 139 (154)
T 1fhg_A 113 YTCKA-VNSLG--EATCTAELLVETMGKEG 139 (154)
T ss_dssp EEEEE-EETTE--EEEEEEEEEEECC----
T ss_pred EEEEE-EECCC--eEEEEEEEEEeCcCcCC
Confidence 99999 77743 35566777777766543
No 499
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.2e-12 Score=86.61 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=70.4
Q ss_pred eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235 106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ 180 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~ 180 (323)
..|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+.. ..+.. .....|.|.+++.+|+|.
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 80 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLP---TPDLSWQLDGKPVRP----DSAHKMLVRENGVHSLIIEPVTSRDAGI 80 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSS---CCEEECBBSSSBCCC----CSSEEEEECTTSCEEEEESSCCGGGCSB
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcC---CCEEEEEECCEECCC----CCceEEEEecCCeEEEEEeeCCcccCEE
Confidence 455666667777888999999999999988 789999999988765 22221 234589999999999999
Q ss_pred EEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235 181 YSCRLIDPKSTNTTPLAQADFDVIMKP 207 (323)
Q Consensus 181 y~C~~~~~~~~~~~~~~~~~l~v~~~p 207 (323)
|+|.+ .|..+ .....+.|.|..+|
T Consensus 81 Y~C~a-~n~~g--~~~~~~~l~V~~~p 104 (110)
T 2dm3_A 81 YTCIA-TNRAG--QNSFSLELVVAAKE 104 (110)
T ss_dssp BCEEE-ECSSC--EEEECCEEEEECCC
T ss_pred EEEEE-ECCCC--EEEEEEEEEEeCCC
Confidence 99999 77743 35566667776644
No 500
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=82.98 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=66.5
Q ss_pred eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC--C-------eeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ--G-------RIKLSEHPEKGTANSVLQIDEATMADRGNY 281 (323)
Q Consensus 211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 281 (323)
.+.+..+.+|+.+.|.|.+.+ .+.+.|++||..+..+. . ++.+. .++ ...+|+|.++..+|+|.|
T Consensus 14 ~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~--~~g--~~~~L~I~~v~~~D~G~Y 87 (112)
T 2e6q_A 14 GLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE--QKG--LQHRLILHAVKHQDSGAL 87 (112)
T ss_dssp CCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEEC--CBT--TEEEEEEESCCSTTCSEE
T ss_pred CCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEE--eCC--cEEEEEECCCCHHHCccE
Confidence 445788999999999999987 77899999999997654 1 66655 211 246899999999999999
Q ss_pred EEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235 282 YCHGNNVATRNSQPNEAFVYVRVKGKSFG 310 (323)
Q Consensus 282 ~C~a~n~~g~~~~~~~~~~~l~v~~~~~~ 310 (323)
+|...+. ...++.|.|.+.|..
T Consensus 88 ~~~~~~~-------~~ssA~L~V~~~p~~ 109 (112)
T 2e6q_A 88 VGFSCPG-------VQDSAALTIQESSGP 109 (112)
T ss_dssp EEEEETT-------EEEEEEEEEECSSCS
T ss_pred EEEEECC-------eeEEEEEEEeCCCcc
Confidence 7754432 345778888877654
Done!