RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15235
(323 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 114 bits (288), Expect = 1e-28
Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 29/290 (10%)
Query: 30 DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFA--ATANLT------EDN 79
D G P+ C + E QV W +G + + A L
Sbjct: 110 DVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHV 169
Query: 80 FKYSIHEAILESGYVQSSLFIP-RMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-SPPPG 137
+Y+ A G SS + + + +D++P T KC+VT + P
Sbjct: 170 GQYNCS-ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI- 227
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+I W K N+ I L ++ ++T+ K T DAGQY+C + ++
Sbjct: 228 ---KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS---C 281
Query: 198 QADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL 255
A V P KL + V + E R EC + GSP V W ++T + + ++
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRM 340
Query: 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
S L++ ++ D G+Y C +N A S + V+
Sbjct: 341 SFVESVAV----LEMYNLSVEDSGDYTCEAHNAAGSASS--STSLKVKEP 384
Score = 104 bits (262), Expect = 3e-25
Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 19/188 (10%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
P TL+C V +P +I WYK + + A + + S+ I K D G+Y+
Sbjct: 22 PITLQCKVDGTPEI----RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPPPTVE 238
C+ + + A + + + ++ + G + EC + GS P V
Sbjct: 78 CKAENSVGAVAS---SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298
W + + ++ S T LQI + + G Y C +N S A
Sbjct: 135 WYK-DGELLKDDANLQTSFIHNVAT----LQILQTDQSHVGQYNCSASNPLGTASSS--A 187
Query: 299 FVYVRVKG 306
+ +
Sbjct: 188 KLTLSEHE 195
Score = 96.4 bits (240), Expect = 2e-22
Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 48/282 (17%)
Query: 31 TEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSSVDSGFAATANLT--------EDNF 80
+ + C + + V W + I +SS + ED+
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 81 KYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-SP 134
Y+ EA +G SS + P + V L+C + +P
Sbjct: 361 DYTC-EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADV-------HLECELQGTP 412
Query: 135 PPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQYSCRLIDPKS 190
P Q+ W+K + + + + SI I D G+Y C+ +
Sbjct: 413 PF----QVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVDSADIGEYQCK-----A 459
Query: 191 TNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247
+N + +K + V+ L + + GE+++L+ + G+ P +V W
Sbjct: 460 SNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV 519
Query: 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
R I +S T LQ A A+ G Y C N A
Sbjct: 520 RESDNIWISYSENIAT----LQFSRAEPANAGKYTCQIKNEA 557
Score = 62.1 bits (151), Expect = 7e-11
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E + GE + L+C V G+P + W T RS K+ + L I++
Sbjct: 13 EHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKMQFKNNVAS----LVINK 67
Query: 273 ATMADRGNYYCHGNNVA 289
+D G Y C N
Sbjct: 68 VDHSDVGEYTCKAENSV 84
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 107 bits (268), Expect = 3e-27
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
T KC+VT + P +I W K N+ I L ++ ++T+ K T DAGQY+
Sbjct: 22 SGTFKCHVTGTAPI----KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
C + ++ A V P KL + V + E R EC + GSP V W
Sbjct: 78 CYASNVAGKDS---CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
++T + + ++S L++ ++ D G+Y C +N A
Sbjct: 135 K-DETEIQESSKFRMSFVESVAV----LEMYNLSVEDSGDYTCEAHNAA 178
Score = 102 bits (255), Expect = 2e-25
Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 44/296 (14%)
Query: 30 DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVD--SGFAATANLT------EDN 79
++ G C +T ++ W + R I + TA LT D
Sbjct: 14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 80 FKYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-S 133
+Y+ A +G S + PR +EP V + +C + S
Sbjct: 74 GQYTC-YASNVAGKDSCSAQLGVQEPPRFIK-----KLEPSRIVKQDE-HTRYECKIGGS 126
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
P +++WYK I E+++ +S + + +V+D+G Y+C + N
Sbjct: 127 PEI----KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE-----AHNA 177
Query: 194 --TPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
+ + V P K + ++G + LEC + G+PP V W + RS
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSG 236
Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
+ K+ + + I AD G Y C +N + + +K
Sbjct: 237 KKYKIMSENFLTS----IHILNVDSADIGEYQCKASNDVGSYT----CVGSITLKA 284
Score = 67.8 bits (166), Expect = 3e-13
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
++ + GE +C V G+ P + W ++ R G K++ T L + +
Sbjct: 13 VSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTAT----LTVLK 67
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
T D G Y C+ +NVA ++S A + V+
Sbjct: 68 VTKGDAGQYTCYASNVAGKDSC--SAQLGVQEP 98
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 106 bits (266), Expect = 5e-27
Identities = 49/200 (24%), Positives = 67/200 (33%), Gaps = 16/200 (8%)
Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---S 167
DI P C V D I W+ N + + + D +
Sbjct: 6 DIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLE 226
+TI +DDAG Y C + T + A + + K K EGE +
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSE--ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 227 CLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
C VV S PPT+ W G D + R + N+ LQI D G Y C G
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-------NNYLQIRGIKKTDEGTYRCEG 174
Query: 286 NNVATRNSQPNEAFVYVRVK 305
+A + V V V
Sbjct: 175 RILARGEINFKDIQVIVNVP 194
Score = 86.9 bits (215), Expect = 7e-20
Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 15/184 (8%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
+ C+V S PP I+W + + ++ + + + + IR D G Y C
Sbjct: 119 VIVCDVVSSLPP----TIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCE 173
Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRI 241
+ V + PT + +++ T G+ + L C G P PT+ W
Sbjct: 174 GRIL-ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW-T 231
Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
+ ++ +S L I D Y C N A Q +
Sbjct: 232 KDGEPIENEEEDDEKHI--FSDDSSELTIRNVDKNDEAEYVCIAENKA--GEQDASIHLK 287
Query: 302 VRVK 305
V K
Sbjct: 288 VFAK 291
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 102 bits (256), Expect = 1e-26
Identities = 47/199 (23%), Positives = 63/199 (31%), Gaps = 22/199 (11%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SI 168
I P C V D I W+ N + + + D ++
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLR 224
TI +DDAG Y C T T A + + K EGE
Sbjct: 65 TIYNANIDDAGIYKCV-----VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 225 LECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+ C VV S PPT+ W G D + R + N+ LQI D G Y C
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-------NNYLQIRGIKKTDEGTYRC 172
Query: 284 HGNNVATRNSQPNEAFVYV 302
G +A + V V
Sbjct: 173 EGRILARGEINFKDIQVIV 191
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 101 bits (253), Expect = 4e-26
Identities = 41/184 (22%), Positives = 61/184 (33%), Gaps = 16/184 (8%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
C P + + I + + + +TI ++DAG Y
Sbjct: 19 SKFFTCTAIGEPES----IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
C+ D K A ++ K T ++V +GE + C V SP P V W
Sbjct: 75 CQATDAKGQTQE--ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 132
Query: 242 GNDT-YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
N+ S R + N+ LQI +D G Y C G A + V
Sbjct: 133 HNEEVTTISDNRFAMLA-------NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
Query: 301 YVRV 304
V V
Sbjct: 186 IVNV 189
Score = 63.3 bits (154), Expect = 3e-12
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ + GE C +G P + S R+ + + + L I
Sbjct: 10 SKVELSVGESKFFTCTAIGEPESIDWYN-PQGEKIISTQRVVVQKEGVRSR----LTIYN 64
Query: 273 ATMADRGNYYCHGNNVA 289
A + D G Y C +
Sbjct: 65 ANIEDAGIYRCQATDAK 81
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 102 bits (256), Expect = 1e-25
Identities = 46/188 (24%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
C P I WY +T+ R+ K+ +TI ++DAG
Sbjct: 21 SKFFTCTAIGEPE----SIDWYNPQGEKIISTQ---RVVVQKEGVRSRLTIYNANIEDAG 73
Query: 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVE 238
Y C+ D K A ++ K T + V +GE + C V SP P V
Sbjct: 74 IYRCQATDAKGQTQE--ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
Query: 239 WRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
W + S R + AN+ LQI +D G Y C G A +
Sbjct: 132 WLYHNEEVTTISDNRFAM-------LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184
Query: 298 AFVYVRVK 305
V V V
Sbjct: 185 IIVIVNVP 192
Score = 89.5 bits (222), Expect = 8e-21
Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 27/190 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
+ C V+ SP P + W N+ +T ++ + + +++ I D G Y
Sbjct: 115 DAEVVCRVSSSPAP----AVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYR 169
Query: 183 CR-------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
C ID + + K T GE++ C GSP P
Sbjct: 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-----FNATAERGEEMTFSCRASGSPEP 224
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
+ W N + L +N+ L + +D G Y C N A
Sbjct: 225 AISWF-RNGKLIEENEKYILKG------SNTELTVRNIINSDGGPYVCRATNKA--GEDE 275
Query: 296 NEAFVYVRVK 305
+AF+ V V+
Sbjct: 276 KQAFLQVFVQ 285
Score = 63.7 bits (155), Expect = 8e-12
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ + GE C +G P + + S R+ + + + L I
Sbjct: 12 SKVELSVGESKFFTCTAIGEPESIDWYNPQGEK-IISTQRVVVQKEGVRSR----LTIYN 66
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
A + D G Y C + + + + + K
Sbjct: 67 ANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQK 98
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 99.8 bits (249), Expect = 2e-25
Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQ 180
T + +++ P P ++ W++ + I+ +T +++ S +TI T ++G+
Sbjct: 22 TATFEAHISGFPVP----EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGR 77
Query: 181 YSCRLIDPKSTNT--TPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPP 234
YS + +TN + A+ V + + ++++TV +G ++RL+ V G P
Sbjct: 78 YSLK-----ATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT 132
Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
P V++ + +S ++S+ + + L I EA D G Y + N
Sbjct: 133 PVVKFYR-DGAEIQSSLDFQISQEGDLYS----LLIAEAYPEDSGTYSVNATNSV 182
Score = 60.5 bits (147), Expect = 4e-11
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+++ V+EG E + G P P V W + + + G A L I
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAK--LTIPA 69
Query: 273 ATMADRGNYYCHGNNVA 289
T A+ G Y N +
Sbjct: 70 VTKANSGRYSLKATNGS 86
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 99.5 bits (248), Expect = 2e-25
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 16/171 (9%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
T C + SP P I W++ K I E + L S +T+R D G Y
Sbjct: 21 EMTFSCRASGSPEP----AISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYV 74
Query: 183 CRLIDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
CR +TN QA V ++P ++ T E ++ L C G P P + W+
Sbjct: 75 CR-----ATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWK 129
Query: 241 IGNDTYFRSQGRIKLSEHPE--KGTANSVLQIDEATMADRGNYYCHGNNVA 289
D + ++G L E +S L I + ++D G Y C +
Sbjct: 130 RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Score = 63.3 bits (154), Expect = 4e-12
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
T GE++ C GSP P + W N + L N+ L +
Sbjct: 12 FNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGS------NTELTVRN 64
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+D G Y C N A + + +AF+ V V+
Sbjct: 65 IINSDGGPYVCRATNKAGEDEK--QAFLQVFVQ 95
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 99.0 bits (247), Expect = 4e-25
Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 26/187 (13%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
T C V P P +I W + I + + + ++ +TI D G Y
Sbjct: 24 VATFMCAVESYPQP----EISWTRNKILI-KLFDTRYSIRENGQLLTILSVEDSDDGIYC 78
Query: 183 CRLIDPKSTN---TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
C + N + V MKP + + +IEG K L C +G+P P+V
Sbjct: 79 CT-----ANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNE 297
W D+ R RI + E + L+I D G Y C N T S+
Sbjct: 134 WI-KGDSALRENSRIAVLE-------SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL-- 183
Query: 298 AFVYVRV 304
+ V V
Sbjct: 184 VKLEVEV 190
Score = 63.6 bits (155), Expect = 3e-12
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
ET+ + E C V P P + W R + E+ +L I
Sbjct: 15 ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN------GQLLTILS 68
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+D G Y C NN + + + V++K
Sbjct: 69 VEDSDDGIYCCTANNGV-GGAVESCGALQVKMK 100
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 101 bits (254), Expect = 9e-25
Identities = 57/300 (19%), Positives = 89/300 (29%), Gaps = 50/300 (16%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATAN--------LTED 78
+I EG + +C +W LN + F + D
Sbjct: 110 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 169
Query: 79 NFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVP----------FTLK 128
YS A ++ S+F D + + P TL+
Sbjct: 170 LGNYSCF-ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE 228
Query: 129 CNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187
C +P P QI W K + S T S + I+ +D G Y C
Sbjct: 229 CFAFGNPVP----QIKWRKLDGSQTSKWLSSEP------LLHIQNVDFEDEGTYECE--- 275
Query: 188 PKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
++ Q + +P ++ G LR C+ G P P V W +
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQP 334
Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
SQ RI++S L+ + + D G Y C N A + V+
Sbjct: 335 LASQNRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGTVY----ASAELTVQA 382
Score = 88.8 bits (220), Expect = 5e-20
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 14/174 (8%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI-RKTTVDDAGQY 181
TL C +PP W + R + I DAG Y
Sbjct: 24 KVTLTCRARANPPA----TYRWKMNGTELK--MGPDSRYRLVAGDLVISNPVKAKDAGSY 77
Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWR 240
C + + T + A F + + +A+ + + + EG + C P + W
Sbjct: 78 QCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137
Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
+ F + L I + +D GNY C + ++
Sbjct: 138 LNEFPNFIPADGRRFVSQT-----TGNLYIAKTEASDLGNYSCFATSHIDFITK 186
Score = 46.0 bits (109), Expect = 8e-06
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 219 EGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
EK+ L C +PP T W G + R +L ++ + D
Sbjct: 21 AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-------GDLVISNPVKAKD 73
Query: 278 RGNYYCHGNNVA 289
G+Y C N
Sbjct: 74 AGSYQCVATNAR 85
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 99 bits (249), Expect = 2e-24
Identities = 49/297 (16%), Positives = 87/297 (29%), Gaps = 46/297 (15%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANLT------EDNF 80
E+ + + C + + + W + R I+ L +D
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74
Query: 81 KYSIHEAILESGYVQSSL---------FIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
Y + + G +S L + + + K + +
Sbjct: 75 IYEV-ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK-- 189
++ W +I + + +T + + I + T +D G+Y L D K
Sbjct: 134 YVEDL----KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 189
Query: 190 ---------------STNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGS 232
L QA + L + +T+ EG+ L L C V G
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 249
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
PPP V W N+ S L + + I+ + AD G Y N
Sbjct: 250 PPPEVSWLK-NEKALASDDHCNLKFEAGR---TAYFTINGVSTADSGKYGLVVKNKY 302
Score = 82.7 bits (204), Expect = 3e-18
Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 30/223 (13%)
Query: 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITI 170
++V LKC V + + IVWYK + I+ + ++ I
Sbjct: 13 YLSWEVTG-ECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLI 65
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLEC-- 227
+ + DAG Y L D + + ++ + V + L+++
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDK---SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 228 --------LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
+ V W N + R R+K E+ LQI+E T D+G
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKG 177
Query: 280 NYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMD 322
Y + T + + + + +++ + +
Sbjct: 178 KYVMELFDGKTGHQK--TVDLSGQAYDEAYAEFQRLKQAAIAE 218
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 102 bits (254), Expect = 3e-24
Identities = 35/273 (12%), Positives = 67/273 (24%), Gaps = 44/273 (16%)
Query: 50 QVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEAILESGYVQSSLFIPRMNA 105
V+W L +S A E G + LF
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC-CARNELGRECTRLF------ 222
Query: 106 ITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--- 158
T + + P+ + + + P ++C G + + W NK++ E
Sbjct: 223 -TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG--FGLTWELENKALEEGNYFEMST 279
Query: 159 ---GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--- 212
R + +D G Y+C S + ++ K
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSS 333
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E + + E+ P W + + +
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS---------FPCEQKGLDNGYSISKFC 384
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
G Y H N + ++ + +R K
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTK--MFTLNIRRK 415
Score = 90.1 bits (223), Expect = 3e-20
Identities = 38/302 (12%), Positives = 75/302 (24%), Gaps = 52/302 (17%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANLT-EDNFKYSIH 85
+ G P+ I C + W+L + + + + + N T +
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 86 EAILE-SG-Y-------VQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
+G Y S + +NA + D E + +Y F
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE----IDQYE-EFCFSVRF 350
Query: 132 T-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190
P + W KS + + SI+ G+Y
Sbjct: 351 KAYPQI----RCTWTFSRKSFPC----EQKGLDNGYSISKFCNHKHQPGEYIFHA----- 397
Query: 191 TNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR------IGND 244
N F + ++ + + E + C G P P+ W+
Sbjct: 398 ENDDAQFTKMFTLNIR-----RKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ + G S ++ + C N + + +
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSC----ETILLNS 508
Query: 305 KG 306
G
Sbjct: 509 PG 510
Score = 77.0 bits (189), Expect = 8e-16
Identities = 27/182 (14%), Positives = 44/182 (24%), Gaps = 17/182 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL+ V +P +W + S+ + S+ I K T AG+Y
Sbjct: 65 SITLQVLVDAPGN---ISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLL 120
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
+ + T + L + L C+ P P VEW
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW---- 173
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
E + E + C N R + +
Sbjct: 174 --VLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECT-RLFTIDLN 227
Query: 304 VK 305
Sbjct: 228 QT 229
Score = 66.3 bits (161), Expect = 3e-12
Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
++V + Y P+ Q+ + + + V + L+ LV
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCALRPQS-SGTVYEAA-----AVEVDVSASITLQVLV 72
Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ W + + Q L + I + T G Y + A
Sbjct: 73 DAPGNISCLW-VFKHSSLNCQPHFDLQNRG-----VVSMVILKMTETQAGEYLLFIQSEA 126
Query: 290 TRNSQPNEAFVYVRVKGK 307
T + V ++
Sbjct: 127 TNYT----ILFTVSIRNT 140
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 100 bits (250), Expect = 3e-24
Identities = 51/297 (17%), Positives = 90/297 (30%), Gaps = 42/297 (14%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANL------TEDNF 80
+ G + + C W N Q + T NL D
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170
Query: 81 KYS---IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-----PFTLKCNVT 132
Y+ + + I R + + G Y+ + + + E L+C
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230
Query: 133 -SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
+P P I+W + + R +S + I +DAG Y C +++
Sbjct: 231 GNPVP----TILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYECV---AENS 280
Query: 192 NTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
+A+ +P + + V E + EC G P PT W N ++
Sbjct: 281 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTR 339
Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
RI++ L I ++D G Y C N + + V +
Sbjct: 340 DRIQIE--------QGTLNITIVNLSDAGMYQCVAENKHGVIF----SSAELSVIAE 384
Score = 94.5 bits (235), Expect = 5e-22
Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 17/188 (9%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI-RKTTVDDAGQY 181
L C V +P P I W + + R + S+ I DAG Y
Sbjct: 25 KVKLSCEVKGNPKP----HIRWKLNGTDVDIGMDF--RYSVVDGSLLINNPNKTQDAGTY 78
Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWR 240
C + T + A+ F + + T++V G+ + L C S + W
Sbjct: 79 QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138
Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
++ R E L I + +D GNY C N T +
Sbjct: 139 FNEYPSYQDNRRFVSQE-------TGNLYIAKVEKSDVGNYTCVVTNTVTNHKV-LGPPT 190
Query: 301 YVRVKGKS 308
+ ++
Sbjct: 191 PLILRNDG 198
Score = 47.1 bits (112), Expect = 4e-06
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
V E +K++L C V G+P P + W G D R + + S+L
Sbjct: 15 VMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-------GSLLIN 67
Query: 271 DEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGK 307
+ D G Y C N T S+ EA +
Sbjct: 68 NPNKTQDAGTYQCIATNSFGTIVSR--EAKLQFAYLEN 103
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 100 bits (251), Expect = 4e-24
Identities = 60/300 (20%), Positives = 95/300 (31%), Gaps = 43/300 (14%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVD------------SGFAATAN 74
D M G + ++C +KW+ +G + D + +
Sbjct: 30 DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRH 89
Query: 75 LTEDNFKYSIHEAILESGYVQS---SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
D Y ++ +SG + S + + + + LKC V
Sbjct: 90 HKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL----SQTESITAFMGDTVLLKCEV 145
Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
P I W K + + S + ++ I + D+G Y C +P ST
Sbjct: 146 IGDPM---PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 192 NTTPLAQADFDVIMKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
T +A+ ++ P + IEG+ LEC V G PPP+ W
Sbjct: 203 RTG--NEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL---- 256
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
R + I+L S L I T D G Y C S A + V V
Sbjct: 257 ---RGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA--SAELTVLV 311
Score = 96.4 bits (240), Expect = 1e-22
Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 14/201 (6%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK----DS 167
EP V L C+ S I W K + + + + +
Sbjct: 26 SEPSDAVTMRGGNVLLNCSAESDRG--VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQN 83
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLE 226
I + D G Y C + + A V E++T G+ + L+
Sbjct: 84 ILHSRHHKPDEGLYQC-EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
C V+G P PT+ W+ G ++ P + LQI D G Y C
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-----SGALQISRLQPGDSGVYRCSAR 197
Query: 287 NVATRNSQPNEAFVYVRVKGK 307
N A+ + NEA V +
Sbjct: 198 NPASTRTG-NEAEVRILSDPG 217
Score = 94.5 bits (235), Expect = 6e-22
Identities = 56/294 (19%), Positives = 90/294 (30%), Gaps = 41/294 (13%)
Query: 30 DTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFAATANLT--------EDN 79
G + + C + + WQ N +++N DS + D+
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS 189
Query: 80 FKYSIHEAILESGYVQSS-----LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-S 133
Y A + + + + P + L+C V+
Sbjct: 190 GVYRC-SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY 248
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRLIDPKSTN 192
PPP W +G + I S + + ++ I T DD+G Y+C N
Sbjct: 249 PPP----SFTWLRGEEVIQLR---SKKYSLLGGSNLLISNVTDDDSGTYTCV---VTYKN 298
Query: 193 TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
A A+ V++ P L E + EC V G P PTV W N
Sbjct: 299 ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM-KNGDVVIPSD 357
Query: 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
++ S L+I +D G Y C N A + + V
Sbjct: 358 YFQIVG-------GSNLRILGVVKSDEGFYQCVAENEAGNAQ----SSAQLIVP 400
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 101 bits (254), Expect = 4e-24
Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 62/294 (21%)
Query: 30 DTEIMEGAPINISCILT----IFEQVKWQLNGRNINQSSV---------DSGFAATANLT 76
T G +++SC Q W ++G + +SG
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPA--QYSWLIDGNIQQHTQELFISNITEKNSG-------- 439
Query: 77 EDNFKYSIHEAILESGYVQSS--LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSP 134
Y+ A + + I + K E + C +
Sbjct: 440 ----LYTCQ-ANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ 494
Query: 135 PPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQYSCRLIDPKSTN 192
+W+ +S+ +S RL S ++T+ T +DA Y C + + S N
Sbjct: 495 NT----TYLWWVNGQSLP----VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546
Query: 193 TTPLAQADFDVIMKPTAKLV--ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
+ DV+ P ++ + + G L L C +P P WRI
Sbjct: 547 RS--DPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING------- 597
Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
VL I + T + G Y C +N+AT + + V
Sbjct: 598 ---------IPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNN--SIVKSITV 640
Score = 99.6 bits (248), Expect = 2e-23
Identities = 49/291 (16%), Positives = 81/291 (27%), Gaps = 52/291 (17%)
Query: 28 FGDTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSV---------DSGF---AATA 73
+T G +N+SC Q W +NG + +SG A
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHN 269
Query: 74 NLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS 133
+ T N + + L C
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED--------------AVALTCEPEI 315
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
+W+ N+S+ + L +L+ ++T+ T +D G Y C + + S +
Sbjct: 316 QNT----TYLWWVNNQSLPVSPRL--QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH 369
Query: 194 TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253
+ + G L L C +PP W I G I
Sbjct: 370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID--------GNI 421
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ L I T + G Y C NN A+ +S+ + V
Sbjct: 422 QQH--------TQELFISNITEKNSGLYTCQANNSASGHSR--TTVKTITV 462
Score = 99.3 bits (247), Expect = 3e-23
Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 22/196 (11%)
Query: 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT 169
K E + C + +W+ N+S+ + L +L+ ++T
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPETQDA----TYLWWVNNQSLPVSPRL--QLSNGNRTLT 167
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
+ T +D Y C +P S + + + GE L L C
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA 227
Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+PP W + G + S L I T+ + G+Y C +N
Sbjct: 228 ASNPPAQYSWFVN--------GTFQQS--------TQELFIPNITVNNSGSYTCQAHNSD 271
Query: 290 TRNSQPNEAFVYVRVK 305
T ++ + V +
Sbjct: 272 TGLNRTTVTTITVYAE 287
Score = 93.9 bits (233), Expect = 2e-21
Identities = 51/277 (18%), Positives = 83/277 (29%), Gaps = 40/277 (14%)
Query: 30 DTEIMEGAPINISC-ILTIFEQVKWQLNGRNINQSSVDSGFAATANLT------EDNFKY 82
+ + + +C T W +N +++ S LT D Y
Sbjct: 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 83 SIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS-PPPGDDYQ 141
E +S I + I P + L C+ S PP Q
Sbjct: 180 KC-ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPA----Q 234
Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-----LIDPKSTNTTPL 196
W+ EL I TV+++G Y+C+ ++T TT
Sbjct: 235 YSWFVNGTFQQSTQEL-----------FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Query: 197 AQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
A+ KP + V + + + L C + W N+ R++LS
Sbjct: 284 VYAEPP---KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLS 338
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
N L + T D G Y C N + +
Sbjct: 339 ND------NRTLTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 91.9 bits (228), Expect = 9e-21
Identities = 55/292 (18%), Positives = 90/292 (30%), Gaps = 39/292 (13%)
Query: 25 ITYFGDTEIMEGAPINISCILTIF-EQVKWQLNGRNINQSSVDSGFAATANLT------E 77
IT + + + ++C I W +N +++ S LT
Sbjct: 293 ITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRN 352
Query: 78 DNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS-PPP 136
D Y E S I + + I P Y + V +L C+ S PP
Sbjct: 353 DVGPYEC-GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA 411
Query: 137 GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP--KSTNTT 194
Q W G + Q + I T ++G Y+C+ + + TT
Sbjct: 412 ----QYSWLID-----------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTT 456
Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
+ KP+ + V + + + C + W N R++
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQ 514
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNEAFVYVRVK 305
LS N L + T D Y C N+V+ S P V + V
Sbjct: 515 LSN------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP----VTLDVL 556
Score = 86.9 bits (215), Expect = 4e-19
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 28/182 (15%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG---------------NKSITEATELSGRLTQSKD-SIT 169
L + + WYKG + T SGR + S+
Sbjct: 18 LLLVHNLPQHL---FGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEGEKLRLECL 228
I+ +D G Y+ +I N Q + KP+ + V + + + C
Sbjct: 75 IQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE 134
Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
+ W N+ R++LS N L + T D +Y C N
Sbjct: 135 PETQDATYLWWV--NNQSLPVSPRLQLSN------GNRTLTLFNVTRNDTASYKCETQNP 186
Query: 289 AT 290
+
Sbjct: 187 VS 188
Score = 52.6 bits (126), Expect = 9e-08
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 11/101 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTA------ 264
V EG+++ L + W G D + G + ++ G A
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 265 ---NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
N+ L I D G Y H N + F
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 96.5 bits (240), Expect = 5e-24
Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 22/191 (11%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C+ P D W + + ++Q+ ++ I D G YSC
Sbjct: 25 GMVLLCDPPYHFPDD-LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSC 83
Query: 184 RLIDP-----KSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPP 235
+ P + PL A +V + + + G+ + LEC +G+P P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
+ WR S I S +VL+I + D G Y C N+ +
Sbjct: 144 DIRWRK-VLEPMPSTAEISTS--------GAVLKIFNIQLEDEGIYECEAENIRGK---- 190
Query: 296 NEAFVYVRVKG 306
++ + V+
Sbjct: 191 DKHQARIYVQA 201
Score = 62.6 bits (152), Expect = 7e-12
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
+ V EG+ + L C P + W + F + + + N L I
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT-----NGNLYI 70
Query: 271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMD 322
+D+GNY C ++ + S ++ + + ++ + + QF D
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 96.5 bits (240), Expect = 5e-24
Identities = 48/206 (23%), Positives = 72/206 (34%), Gaps = 21/206 (10%)
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS--- 167
P V + P TL C V P P I W+K + ++ + S R+ +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEP----TIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 168 -ITIRKTTVDDAGQYSC----RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK 222
T++ D G+Y C R+ S + + D + V +GE
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEP----KDTRVAKGET 125
Query: 223 LRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
LEC G P PT+ W + + + L I D GNY
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 282 YCHGNNVA-TRNSQPNEAFVYVRVKG 306
C N+ TR S + A + V+VK
Sbjct: 186 KCIAQNLVGTRES--SYAKLIVQVKA 209
Score = 47.6 bits (113), Expect = 1e-06
Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 26/175 (14%)
Query: 30 DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFAATAN------------L 75
D + + P ++C + ++W +G ++ + S +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 76 TEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT--S 133
+D +Y A G S ++ + ++ +EPK L+C
Sbjct: 78 EQDGGEYWCV-AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 134 PPPGDDYQIVWYKGNKSITEATEL----SGRLTQSKD-SITIRKTTVDDAGQYSC 183
P P ++W K + + + S R+ ++ I D G Y C
Sbjct: 137 PEP----TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 95.9 bits (239), Expect = 6e-24
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 26/178 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
TL C VT P P + WY+ K I L R+ + K + I T DDA
Sbjct: 21 NATLVCKVTGHPKP----IVKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 180 QYSCRLIDPKSTNT--TPLAQADFDVIMKPTA------KLVETLTVIEGEKLRLECLVVG 231
Y R +TN + A +V + + + + + GE + ++ G
Sbjct: 76 VYQVR-----ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
P P + W+ G D + G ++ + S++ + D G Y N
Sbjct: 131 KPDPVITWQKGQDL-IDNNGHYQVIVT---RSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Score = 62.8 bits (153), Expect = 5e-12
Identities = 22/97 (22%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
L V L C V G P P V+W + ++ E L I
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK---GGYHQLIIAS 68
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
T D Y N S A + V V K
Sbjct: 69 VTDDDATVYQVRATNQGGSVSG--TASLEVEVPAKIH 103
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 101 bits (252), Expect = 7e-24
Identities = 56/299 (18%), Positives = 93/299 (31%), Gaps = 48/299 (16%)
Query: 35 EGAPINISCILTI----------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI 84
+ + I C+ +I + + ++ +G I+ S GF + +
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS-KKGFTIPSYMISYAGMVFC 200
Query: 85 HEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV------PFTLKCNVTSPPPGD 138
EA + QS ++I + Y I + + L C +
Sbjct: 201 -EAKINDESYQSIMYI----VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDS--------ITIRKTTVDDAGQYSCRLIDPKS 190
W + ++ L S +TI T D G Y+C
Sbjct: 256 -IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 314
Query: 191 TNTTPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
T V KP + + GE++R+ +G PPP ++W N
Sbjct: 315 TKK---NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIP 370
Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
S IK A VL I E + D GNY N ++ Q + + V V
Sbjct: 371 LESNHTIK---------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420
Score = 87.9 bits (217), Expect = 3e-19
Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 36/205 (17%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----------------- 166
+L C + WYK K+
Sbjct: 566 SVSLWCTADRSTF---ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN 622
Query: 167 ---SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEG 220
+ ++ ++ D G Y C D K+ V+ + + L T G
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRH-CVVRQLTVLERVAPTITGNLENQTTSIG 681
Query: 221 EKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
E + + C G+PPP + W F+ + N L I D G
Sbjct: 682 ESIEVSCTASGNPPPQIMW-------FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 281 YYCHGNNVATRNSQPNEAFVYVRVK 305
Y C +V EAF +
Sbjct: 735 YTCQACSVLGCAKV--EAFFIIEGA 757
Score = 79.4 bits (195), Expect = 2e-16
Identities = 24/200 (12%), Positives = 55/200 (27%), Gaps = 19/200 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI-TIRKTTVDDAGQYS 182
P P + + ++G I + ++ T+ + + Y
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
C ++ F V P L + E E + L C S + W
Sbjct: 530 CEAVNKVGRGE---RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKL 586
Query: 243 NDT---------------YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ ++ + ++++ A++ D+G+Y C +
Sbjct: 587 GPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD 646
Query: 288 VATRNSQPNEAFVYVRVKGK 307
T+ + V +
Sbjct: 647 RKTKKRHCVVRQLTVLERVA 666
Score = 78.3 bits (192), Expect = 4e-16
Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 19/186 (10%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI-TIRKTTVDDAGQYS 182
+ C +W + E++ TI K +D G Y
Sbjct: 48 TLQITCRGQRDL-----DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102
Query: 183 CRLIDPKSTNTTPLAQADFD---VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
C + + + D+ + V +T + + + + CL S
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162
Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
+ F G ++S +KG I ++ G +C A N + ++
Sbjct: 163 ARYPEKRFVPDGN-RISWDSKKG-----FTIPSYMISYAGMVFC----EAKINDESYQSI 212
Query: 300 VYVRVK 305
+Y+ V
Sbjct: 213 MYIVVV 218
Score = 77.9 bits (191), Expect = 5e-16
Identities = 34/216 (15%), Positives = 57/216 (26%), Gaps = 46/216 (21%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
+ PPP +I WYK + S ++ +TI + + D G Y+
Sbjct: 347 RVRIPAKYLGYPPP----EIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYT 397
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPPP-TV 237
L +P S V + P + + + G L C V PPP +
Sbjct: 398 VILTNPISKEKQS-HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456
Query: 238 EWRIGNDTYFRSQGRIKLSEHPEK----------------------------GTANSVLQ 269
W + ++ +S G +V
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ Y C N R + +V
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGER--VISFHVTRG 550
Score = 62.1 bits (150), Expect = 7e-11
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 15/140 (10%)
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
++ + + C S P D + + LT+ L++ C
Sbjct: 1 MQSKVLLAVALWLCVETRAASV-GLPSVSLDLPRLSIQK----DILTIKANTTLQITC-- 53
Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
G W + S+ R++++E + G L I + D G Y C
Sbjct: 54 RGQRDLDWLW---PNNQSGSEQRVEVTECSD-GLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 290 TRNSQPNEAFVYVRVKGKSF 309
+ +VYV+ F
Sbjct: 110 LASV----IYVYVQDYRSPF 125
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 100 bits (251), Expect = 7e-24
Identities = 52/297 (17%), Positives = 85/297 (28%), Gaps = 28/297 (9%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATAN--LTEDNFKYSIH-- 85
E + C LT E + L G D F + + K + H
Sbjct: 123 SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRL 182
Query: 86 ----EAILESGYVQSSLFIPRMNAITGNYD-IEPKYKVFEYRV--PFTLKCNVTSPPPGD 138
E V S FI ++ + + R FT+ C +
Sbjct: 183 CLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSS- 241
Query: 139 DYQIVWYKGNKSITEA----TELSGRLTQSKDSI-TIRKTTVDDAGQYSCRLIDPKSTNT 193
W + N + G + + TI V+D+G + C + +
Sbjct: 242 -VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 194 TPLAQADFDVIMKP----TAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFR 248
+V+ K + T+ V +GE + L P P +W N T+
Sbjct: 301 ---VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357
Query: 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
SE+ S L + + G Y +N + VYV K
Sbjct: 358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI--AFNVYVNTK 412
Score = 91.3 bits (226), Expect = 1e-20
Identities = 44/291 (15%), Positives = 81/291 (27%), Gaps = 36/291 (12%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL 89
D + G I + C VKW + + + + + KY+
Sbjct: 45 DLIVRVGDEIRLLCTDP--GFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTN--- 99
Query: 90 ESGYVQS-SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148
+ G S +F+ + + + + ++C +T P KG
Sbjct: 100 KHGLSNSIYVFVRDPAKLF----LVDRSLYGKEDNDTLVRCPLTDPEV----TNYSLKGC 151
Query: 149 KSITEATELSGRLTQSKDS---ITIRKTTV-DDAGQYSCRLIDPKSTNTTPLAQADFDVI 204
+ L L D I I+ C + F +
Sbjct: 152 ----QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCS----VDQEGKSVLSEKFILK 203
Query: 205 MKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLS 256
++P K V + + EGE+ + C + W+ N +
Sbjct: 204 VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
+ L I A + D G + C+ NN + + V KG
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV--TTTLEVVDKGF 312
Score = 87.0 bits (215), Expect = 3e-19
Identities = 48/329 (14%), Positives = 86/329 (26%), Gaps = 55/329 (16%)
Query: 13 IFVHQSISADGKITYF-GDTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSG 68
+ V + A ++ + EG ++C + W+ +
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Query: 69 FAATANLTEDNFKYSIHEAILE------------SGYVQSSLFI-----PRMNAITGNYD 111
+ E +I A + G + + +N
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI-- 319
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---- 166
V + L P P W N++ T+ E + +
Sbjct: 320 -NTTVFVNDGE-NVDLIVEYEAFPKP---EHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVETLTVIEGEKL 223
+ + + + G Y+ + +N+ A F V KP E LT
Sbjct: 375 SELHLTRLKGTEGGTYTFLV-----SNSDVNAAIAFNVYVNTKP-----EILTYDRLVNG 424
Query: 224 RLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMA 276
L+C+ G P PT++W T R + S P G ID +
Sbjct: 425 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 277 DRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
G C N + S +
Sbjct: 485 HNGTVECKAYNDVGKTSA--YFNFAFKGN 511
Score = 52.4 bits (125), Expect = 8e-08
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 26/137 (18%)
Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVET-LTVIEGEKLRLECLVVGS 232
A + C L+ T +Q P+ ++ L V G+++RL C +
Sbjct: 5 RGAWDFLCVLLL-LLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC----T 59
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
P V+W F ++ + ++A + G Y C + +
Sbjct: 60 DPGFVKW------TFEILDETNENKQ-------NEWITEKAEATNTGKYTCTNKHGLSN- 105
Query: 293 SQPNEAFVYVRVKGKSF 309
+V+VR K F
Sbjct: 106 ----SIYVFVRDPAKLF 118
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 95.3 bits (237), Expect = 1e-23
Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 37/190 (19%)
Query: 125 FTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
L VT ++ W +I S R+ + I + T +D
Sbjct: 20 IQLYSFVTYYVEDL----KVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 179 GQYSCR-----------------LIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIE 219
G+Y D L QA + L + +T+ E
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
G+ L L C V G PPP V W N+ L + + I+ + AD G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGR---TAYFTINGVSTADSG 187
Query: 280 NYYCHGNNVA 289
Y N
Sbjct: 188 KYGLVVKNKY 197
Score = 47.2 bits (112), Expect = 1e-06
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 219 EGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
E ++L V V W N + R R+K E+ LQI+E T D
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPND 70
Query: 278 RGNYYCHGNNVATRNS 293
+G Y + T +
Sbjct: 71 KGKYVMELFDGKTGHQ 86
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 94.0 bits (234), Expect = 3e-23
Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 26/176 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
L C + P P I WY+ K + + S + S D ++T+ +D
Sbjct: 24 AAQLSCQIVGRPLP----DIKWYRFGKELIQ----SRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPP 234
G Y+C + T + + P L E G LRL + +G P
Sbjct: 76 GVYTCIATNEVGEVET---SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132
Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVA 289
P + W G ++ I + + L + G Y +NV
Sbjct: 133 PAMTWFHGQKL-LQNSENITIENTEH----YTHLVMKNVQRKTHAGKYKVQLSNVF 183
Score = 60.5 bits (147), Expect = 4e-11
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+T GE +L C +VG P P ++W + K+S T L +
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRTHT----LTVMTEE 71
Query: 275 MADRGNYYCHGNNVA 289
D G Y C N
Sbjct: 72 QEDEGVYTCIATNEV 86
Score = 49.3 bits (118), Expect = 3e-07
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 46/182 (25%)
Query: 30 DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS- 83
D G +SC +KW G+ + QS ++ D ++
Sbjct: 16 DVTTKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSR-------KYKMSSDGRTHTL 65
Query: 84 -IHEAILE------------SGYVQSS--LFIPRMNAITGNYDIEPKYKVFEYRVPFTLK 128
+ E G V++S L + Y ++ KY L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS-TLRLH 124
Query: 129 CNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRK-TTVDDAGQYS 182
P P + W+ G K + S +T + ++ AG+Y
Sbjct: 125 VMYIGRPVP----AMTWFHGQKLLQN----SENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 183 CR 184
+
Sbjct: 177 VQ 178
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 93.4 bits (232), Expect = 4e-23
Identities = 45/187 (24%), Positives = 64/187 (34%), Gaps = 22/187 (11%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
P TL+CN+T S W K +T R S I K +D+G+Y
Sbjct: 20 PVTLQCNLTSSSHT--LMYSYWTKNGVELTA-----TRKNASNMEYRINKPRAEDSGEYH 72
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEW-R 240
C + P A A +V P + EG+ + C VG P P W +
Sbjct: 73 CV----YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128
Query: 241 IGN---DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
N + S GR + K + ++ D G Y C+ N S
Sbjct: 129 KENGVFEEISNSSGRFFII---NKENYTELNIVNLQITEDPGEYECNATNSIGSASV--S 183
Query: 298 AFVYVRV 304
+ VRV
Sbjct: 184 TVLRVRV 190
Score = 58.7 bits (142), Expect = 1e-10
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E + + L+C + S + + ++ + + +N +I++
Sbjct: 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSY-----WTKNGVELTATRKNA---SNMEYRINK 62
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
D G Y+C + V+ + A + V+
Sbjct: 63 PRAEDSGEYHCVYHFVSAPKAN---ATIEVKAA 92
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 93.3 bits (232), Expect = 8e-23
Identities = 43/198 (21%), Positives = 63/198 (31%), Gaps = 31/198 (15%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI--RKTTVDDAGQ 180
+ C T P P +IVW K K ++ S+ T D
Sbjct: 23 VASFICQATGDPRP----KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAI 78
Query: 181 YSCRLIDPKSTNT--TPLAQADFDVIMKPTAKLV--------ETLTVIEGEKLRLECLVV 230
Y C ++N V+ + + V + C
Sbjct: 79 YECV-----ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133
Query: 231 GSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
G+P P + W + GRIK G LQI+++ +D+G Y C N
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA----LQIEQSEESDQGKYECVATNS 189
Query: 289 A-TRNSQPNEAFVYVRVK 305
A TR S A +YVR
Sbjct: 190 AGTRYSA--PANLYVRGT 205
Score = 50.2 bits (120), Expect = 1e-07
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
T + G C G P P + W +Q + + SVL+I
Sbjct: 14 VDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVI---EFDDGSGSVLRIQP 69
Query: 273 A-TMADRGNYYCHGNNVA 289
T D Y C +N
Sbjct: 70 LRTPRDEAIYECVASNNV 87
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 93.4 bits (232), Expect = 8e-23
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 47/198 (23%)
Query: 124 PFTLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L C T P Q W+K NK I + L V DAG Y
Sbjct: 35 FVKLCCRATGHPFV----QYQWFKMNKEIPNGN--TSELI-------FNAVHVKDAGFYV 81
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLV----------------ETLTVIEGEKLRLE 226
CR+ + + + + DV P + + ++ G L L+
Sbjct: 82 CRVNNNFTFEFS--QWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQ 139
Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
C+ VGSP P +W F+++ + + + + +G Y+CH
Sbjct: 140 CVAVGSPIPHYQW-------FKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVY 185
Query: 287 NVA-TRNSQPNEAFVYVR 303
N +++S+ E +
Sbjct: 186 NDRDSQDSKKVEIIIDEL 203
Score = 59.9 bits (145), Expect = 7e-11
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E+ V+ G+ ++L C G P +W F+ I S L +
Sbjct: 26 ESKAVLAGQFVKLCCRATGHPFVQYQW-------FKMNKEIPNGN-------TSELIFNA 71
Query: 273 ATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
+ D G Y C NN SQ + + V +SF
Sbjct: 72 VHVKDAGFYVCRVNNNFTFEFSQ--WSQLDVCDIPESF 107
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 95.6 bits (237), Expect = 9e-23
Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 24/195 (12%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
C + I WYK + +TE + R+ Q K+ + V+D+G Y C
Sbjct: 22 IDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTA-----KLVETLTVIEGEKLRLECLVV------GS 232
+ + + + + + + L C + +
Sbjct: 80 VVRNSSYCLR---IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN 136
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
P ++W + L ++ L + RGNY CH +
Sbjct: 137 ELPKLQWYKD--------CKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 293 SQPNEAFVYVRVKGK 307
P + +
Sbjct: 189 QYPITRVIEFITLEE 203
Score = 86.7 bits (214), Expect = 1e-19
Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 30/200 (15%)
Query: 113 EPKYKVFEYRVPFTLKCNVT-------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSK 165
+ L C + P ++ WYK K + + + K
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELP----KLQWYKDCKPLLLD---NIHFSGVK 161
Query: 166 DSITIRKTTVDDAGQYSCRL------IDPKSTNTTPLAQADFDVIMKP--TAKLVETLTV 217
D + + G Y+C T + + +P + ET+ V
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221
Query: 218 IEGEKLRLECLVVGSPPPTVEWRIGN-------DTYFRSQGRIKLSEHPEKGTANSVLQI 270
G +++L C V G W+ ++ + + T +VL I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281
Query: 271 DEATMAD-RGNYYCHGNNVA 289
E + + C N
Sbjct: 282 SEIESRFYKHPFTCFAKNTH 301
Score = 47.0 bits (111), Expect = 3e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP-TVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
L E C + + T+ W + + T ++ ++ +H L
Sbjct: 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH------KEKLWF 66
Query: 271 DEATMADRGNYYCHGNNVA 289
A + D G+YYC N +
Sbjct: 67 VPAKVEDSGHYYCVVRNSS 85
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 96.5 bits (240), Expect = 2e-22
Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 19/215 (8%)
Query: 105 AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQ 163
+ Y+ + + +KC + S + W+ ++ E G+
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195
Query: 164 SKD-SITIRKTTVDDA-GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--------- 212
+ IR+ +D Y CR + T A VI +P + V
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ T + L C G P P W + R Q + L++ ++ + L I +
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQ-AVVLNDRVKQV--SGTLIIKD 312
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
A + D G Y C NN + V
Sbjct: 313 AVVEDSGKYLCVVNNSVGG----ESVETVLTVTAP 343
Score = 96.2 bits (239), Expect = 4e-22
Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 32/206 (15%)
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
I+P + ++ P C T +P + W K K + S+ + I
Sbjct: 348 IDPPTQTVDFGRPAVFTCQYTGNPIK----TVSWMKDGK----------AIGHSESVLRI 393
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA------KLVETLTVIEGEKLR 224
+D G Y C N A+A ++ + + + T+ G +
Sbjct: 394 ESVKKEDKGMYQCF-----VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVF 448
Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP-EKGTANSVLQIDEATMADRGNYYC 283
L+C+ G+P P + W + + + R ++ ++ G S L I D G Y C
Sbjct: 449 LKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 284 HGNNVATRNSQPNEAFVYVRVKGKSF 309
+ E + V G +
Sbjct: 508 IAKSKVGV----AEHSAKLNVYGLPY 529
Score = 93.8 bits (233), Expect = 2e-21
Identities = 55/307 (17%), Positives = 92/307 (29%), Gaps = 69/307 (22%)
Query: 30 DTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSS----------VDSG----FAATA 73
+ G P +C T V W +G+ I S D G F
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFV--- 408
Query: 74 NLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT- 132
++ + + A L+ + P + +EP V LKC
Sbjct: 409 ---RNDRESAEASAELK---LGGRFDPPVIRQAFQEETMEPGPSV-------FLKCVAGG 455
Query: 133 SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI---------TIRKTTVDDAGQYSC 183
+P P +I W K I + R + I +D G Y C
Sbjct: 456 NPTP----EISWELDGKKIAN----NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 184 RLIDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
+ + A +V P + +E ++ GE L + C V G P ++ W
Sbjct: 508 I-----AKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER 562
Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVATRNSQPNEAFV 300
++ + K+ N L I+ D+ Y C N ++ +
Sbjct: 563 -DNRALPINRKQKVFP-------NGTLIIENVERNSDQATYTCVAKNQEGYSA---RGSL 611
Query: 301 YVRVKGK 307
V+V
Sbjct: 612 EVQVMVL 618
Score = 93.5 bits (232), Expect = 3e-21
Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 63/295 (21%)
Query: 28 FGDTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH 85
F + + G + + C+ ++ W+L+G+ I + +Y +
Sbjct: 436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND----------------RYQVG 479
Query: 86 EAILESGYVQSSLFIPRMNAI-TGNY-----------------DIE--------PKYKVF 119
+ + +G V S L I ++A G Y ++ K +
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV 539
Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVD-D 177
+ C V P IVW + N+++ + + + ++ I + D
Sbjct: 540 AGE-TLIVTCPVAGYPI---DSIVWERDNRALPI----NRKQKVFPNGTLIIENVERNSD 591
Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPP 235
Y+C + + + + V++ P E G+ L L C V G P
Sbjct: 592 QATYTCVAKNQEGYSAR--GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
++W + + I S + SVL I+ + GN+ CH N+A
Sbjct: 650 LNIDWTL-DGQAISEDLGITTSRVGRR---GSVLTIEAVEASHAGNFTCHARNLA 700
Score = 89.6 bits (222), Expect = 6e-20
Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 22/278 (7%)
Query: 24 KITYFGDTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFA------ATANL 75
I I+ G + ++C + + + + W+ + R + + F
Sbjct: 529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVER 588
Query: 76 TEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPP 135
D Y+ A + GY ++ + + + TL C+V
Sbjct: 589 NSDQATYTCV-AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Query: 136 PGDDYQIVWYKGNKSITEATELSGRLTQSKDS-ITIRKTTVDDAGQYSCRLIDP--KSTN 192
I W ++I+E ++ + S +TI AG ++C +
Sbjct: 648 L--PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705
Query: 193 TTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
TTPL +V + P L +G ++EC G P P V W+
Sbjct: 706 TTPL-----NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760
Query: 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+K S++ L +D + G Y C N
Sbjct: 761 DLKKSDNI--RVEEGTLHVDNIQKTNEGYYLCEAINGI 796
Score = 67.7 bits (165), Expect = 1e-12
Identities = 15/123 (12%), Positives = 29/123 (23%), Gaps = 3/123 (2%)
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLE 226
+ + ++ + + T A P + + +E
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTL-AANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
C G+P P + W + T ++ K D Y C
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 287 NVA 289
N
Sbjct: 121 NQF 123
Score = 27.6 bits (61), Expect = 7.4
Identities = 0/26 (0%), Positives = 5/26 (19%)
Query: 268 LQIDEATMADRGNYYCHGNNVATRNS 293
+ + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQT 26
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 93.6 bits (232), Expect = 3e-22
Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 41/298 (13%)
Query: 33 IMEGAPINISCILTIFEQVKWQLNGRNINQS-SVDSGFAATANLT------EDNFKYSIH 85
+ + ++C + V W+ + Q + ++ LT D +Y
Sbjct: 12 LNVSSTFVLTCSGS--APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC- 68
Query: 86 EAILESGYVQSS-----LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY 140
G +F+P D E + T+ C VT P
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL---- 124
Query: 141 QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC------RLIDPKSTNTT 194
+ ++ + + + + + Y C R +D +
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYYVY 175
Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
L + +V + V +GE + L C+V+G+ EW R +
Sbjct: 176 RLQVSSINVSVNA-----VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312
S+L I A + D G Y C+ N +E + + V +
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESV--NDHQDEKAINITVVESGHHHH 286
Score = 56.6 bits (136), Expect = 2e-09
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
+++ P L + L C S V W SQ + + G
Sbjct: 1 LVVTPPG---PELVLNVSSTFVLTC----SGSAPVVW------ERMSQEPPQEMAKAQDG 47
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
T +SVL + T D G Y+C N+ + +++V F
Sbjct: 48 TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 93.1 bits (231), Expect = 3e-22
Identities = 47/293 (16%), Positives = 89/293 (30%), Gaps = 56/293 (19%)
Query: 30 DTEIMEGAPINISCILTIF---EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHE 86
+ + + + C + +W LNG S Y I
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITS 54
Query: 87 AILE---------SGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPG 137
A + +S ++ G ++ +VF P L+C+
Sbjct: 55 ASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL- 111
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
Y +++Y+ K+ + ++TI KT + G Y C + + ++
Sbjct: 112 -VYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162
Query: 198 QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLS 256
++ P T ++EG + L C P ++ YF S
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL------YFSFY---MGS 213
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVA---TRNSQPNEAFVYVRVKG 306
+ +S QI A D G Y+C + S + ++V G
Sbjct: 214 KTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPE----LELQVLG 262
Score = 91.5 bits (227), Expect = 1e-21
Identities = 32/187 (17%), Positives = 50/187 (26%), Gaps = 31/187 (16%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL C V P W+ + S S I +V+D+G+Y C
Sbjct: 18 TVTLHCEVLHLPG--SSSTQWFLNGTATQT----------STPSYRITSASVNDSGEYRC 65
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIG 242
+ + ++ V + EGE L L C V +
Sbjct: 66 Q-----RGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRN 120
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
+ + NS L I + ++ G Y+C G S V
Sbjct: 121 G-------------KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE 167
Query: 303 RVKGKSF 309
Sbjct: 168 LFPAPVL 174
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 91.8 bits (228), Expect = 3e-22
Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 37/199 (18%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK----TTVDDA 178
+ C PPP IVW K K + T+ + + I+I + D
Sbjct: 23 VASFYCAARGDPPP----SIVWRKNGKKV-SGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 179 GQYSCRLIDPKSTN---TTPLAQADFDVIMKPTAKLV--------ETLTVIEGEKLRLEC 227
Y C + N A A + T + G + + C
Sbjct: 78 APYECV-----AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTC 132
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+G+P P + W S R L + LQI+ + D+G Y C N
Sbjct: 133 KAIGNPTPNIYWIKNQTKVDMSNPRYSLK--------DGFLQIENSREEDQGKYECVAEN 184
Query: 288 VA-TRNSQPNEAFVYVRVK 305
T +S+ +YV+V+
Sbjct: 185 SMGTEHSKA--TNLYVKVR 201
Score = 54.4 bits (131), Expect = 5e-09
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ V G C G PPP++ WR +Q R + E S+L+I+
Sbjct: 14 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ---PGGISILRIEP 70
Query: 273 ATMA-DRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
D Y C N A + +
Sbjct: 71 VRAGRDDAPYECVAENGV---GDAVSADATLTIYEGD 104
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 94.4 bits (234), Expect = 3e-22
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 29/200 (14%)
Query: 124 PFTLKCNVT--------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV 175
P L+C SP + W+K + + T E R+ ++ +
Sbjct: 35 PVALRCPQVPYWLWASVSPRI----NLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQ 90
Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA---KLVETLTVIEGEKLRLEC----- 227
+D+G Y C + + + V A + + L C
Sbjct: 91 EDSGTYVCTTRNASYCDK---MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
++W + + + + L + + + D G Y C
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG------TTHLLVHDVALEDAGYYRCVLTF 201
Query: 288 VATRNSQPNEAFVYVRVKGK 307
+ +R+K K
Sbjct: 202 AHEGQQYNITRSIELRIKKK 221
Score = 79.0 bits (194), Expect = 9e-17
Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 60/320 (18%)
Query: 18 SISADGKITYFGDTEIMEGAPINISCILTIFE---------QVKWQLNGRNINQSSVDSG 68
+ S + ++ +EG P+ + C + + W N +
Sbjct: 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEET 74
Query: 69 FAATANLTEDNFKYSIHEAILE------------SGYVQSSLFIPRMNAITGNYDIEPKY 116
+ + + A+ E S + S+ +
Sbjct: 75 -----RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP 129
Query: 117 KVFEYRVPFTLKCNVT------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
++ L C +I WYK + + + E + + +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDV----KIQWYKDSLLLDKDNEKF-LSVRGTTHLLV 184
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--------ETLTVIEGEK 222
++DAG Y C L ++ +K + +T++ G +
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYN-ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 223 LRLECLV---VGSPPPTVEWRIGNDTY---------FRSQGRIKLSEHPEKGTANSVLQI 270
L + C V G+P T+ W NDT+ R + SE+ + L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSEN-NENYIEVPLIF 302
Query: 271 DEATMADRG-NYYCHGNNVA 289
D T D ++ C +N
Sbjct: 303 DPVTREDLHMDFKCVVHNTL 322
Score = 54.7 bits (131), Expect = 1e-08
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 23/132 (17%)
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC-------LVVGSPPPTVE 238
+ P + + K +EGE + L C SP +
Sbjct: 6 LQPAAHTGAARSCRFRGRHYKRE-------FRLEGEPVALRCPQVPYWLWASVSPRINLT 58
Query: 239 W-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
W + + + ++ + L + A D G Y C N + +
Sbjct: 59 WHKNDSARTVPGEEETRMWAQ------DGALWLLPALQEDSGTYVCTTRNASYCDKM--S 110
Query: 298 AFVYVRVKGKSF 309
+ V +F
Sbjct: 111 IELRVFENTDAF 122
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 91.0 bits (226), Expect = 3e-22
Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 27/175 (15%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
+ C V+ SP P + W N+ +T + R + ++ I D G Y
Sbjct: 19 DAEVVCRVSSSPAP----AVSWLYHNEEVTTIS--DNRFAMLANNNLQILNINKSDEGIY 72
Query: 182 SCR-------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP 234
C ID + + K T GE++ C GSP
Sbjct: 73 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-----FNATAERGEEMTFSCRASGSPE 127
Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
P + W N + L +N+ L + +D G Y C N A
Sbjct: 128 PAISWF-RNGKLIEENEKYILKG------SNTELTVRNIINSDGGPYVCRATNKA 175
Score = 70.6 bits (173), Expect = 8e-15
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
++V +GE + C V SP P V W + S R + N+ L
Sbjct: 7 EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-------NNNL 59
Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
QI +D G Y C G A + V V V
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 90.9 bits (225), Expect = 4e-22
Identities = 33/173 (19%), Positives = 51/173 (29%), Gaps = 24/173 (13%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C++ + W KG + E + + + D G+YSC
Sbjct: 15 KILLTCSLNDSAT-EVTGHRWLKGGVVLKEDALPGQKTE-------FKVDSDDQWGEYSC 66
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIG 242
+ V + + EGE L C PP T W
Sbjct: 67 VFLPEPMGTANIQLHGPPRVKAVK-----SSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 243 NDT-----YFRSQGRIKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVA 289
D+ S+ R +S + L I+ M D G Y C+G +
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSE----LHIENLNMEADPGQYRCNGTSSK 170
Score = 48.5 bits (115), Expect = 5e-07
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
V T G K+ L C + S + + +K P +
Sbjct: 5 VFTTVEDLGSKILLTCSLNDSATEVTGH-----RWLKGGVVLKEDALP-----GQKTEFK 54
Query: 272 EATMADRGNYYCHGNN 287
+ G Y C
Sbjct: 55 VDSDDQWGEYSCVFLP 70
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 90.3 bits (224), Expect = 4e-22
Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 36/182 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL C P D Q W+ I T+ K +D+G+Y+C+
Sbjct: 23 TLTCQGARSPESDSIQ--WFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQ- 69
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGND 244
+ T+ V+ + L EGE + L C P V + N
Sbjct: 70 ----TGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NG 124
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVR 303
+ + I +A + G+Y+C GN T +S+P V +
Sbjct: 125 KSQKFSHL------------DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKP----VTIT 168
Query: 304 VK 305
V+
Sbjct: 169 VQ 170
Score = 44.4 bits (105), Expect = 9e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 16/73 (21%)
Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
V++ + + L C SP +++W F + I T +A
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQW-------FHNGNLIP--------THTQPSYRFKAN 59
Query: 275 MADRGNYYCHGNN 287
D G Y C
Sbjct: 60 NNDSGEYTCQTGQ 72
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 92.7 bits (230), Expect = 6e-22
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 15/190 (7%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ-SKDSITIRKTTVDDAGQYS 182
L C +T P + + + + TI + + Y
Sbjct: 106 DALLPCLLTDPVL--EAGVSLVRVRGRPLMR---HTNYSFSPWHGFTIHRAKFIQSQDYQ 160
Query: 183 CR-LIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEW 239
C L+ + + + VI P A + L I GE ++ C +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
N+T + H + L +D+ GNY C +NV ++S
Sbjct: 221 LQHNNTKLAIPQQSDF--HNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS----TS 274
Query: 300 VYVRVKGKSF 309
++ RV +
Sbjct: 275 MFFRVVESAG 284
Score = 74.6 bits (183), Expect = 2e-15
Identities = 26/191 (13%), Positives = 42/191 (21%), Gaps = 32/191 (16%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL+C + W + + S ++ T + G Y C
Sbjct: 21 TVTLRCVGNGS-------VEWDGPP-----SPHWTLYSDGSSSILSTNNATFQNTGTYRC 68
Query: 184 RLIDPKSTNTTPLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGSPP-PTVE 238
A + +K P L + + V E + L CL+ V
Sbjct: 69 T-----EPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
S I A +Y C S
Sbjct: 124 LVRVRGRPLMRHTNYSFSP-------WHGFTIHRAKFIQSQDYQCSALMGGRKVMSIS-- 174
Query: 298 AFVYVRVKGKS 308
+ V+
Sbjct: 175 IRLKVQKVIPG 185
Score = 51.9 bits (124), Expect = 8e-08
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
L V G + L C+ G +VEW ++ ++S+L +
Sbjct: 12 PELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLY----------SDGSSSILSTNN 57
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
AT + G Y C S +YV+ + +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGS--AAIHLYVKDPARPW 92
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 93.1 bits (231), Expect = 9e-22
Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 37/191 (19%)
Query: 124 PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY 181
L C P VW K + S R+ + + + +D+G Y
Sbjct: 25 AVELSCPPPGGGPMG----PTVWVKDGTGLVP----SERVLVGPQRLQVLNASHEDSGAY 76
Query: 182 SC--------------RLIDPKSTNTTPLAQADFD---------VIMKPTAKLVETLTVI 218
SC R+ D S+ + + + +P + L V
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
+R C G+P P++ W N FR + RI + L ++ +DR
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRH---QQWSLVMESVVPSDR 192
Query: 279 GNYYCHGNNVA 289
GNY C N
Sbjct: 193 GNYTCVVENKF 203
Score = 90.1 bits (223), Expect = 1e-20
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
+C +P P I W K + + G + + S+ + D G Y
Sbjct: 140 TVRFRCPAAGNPTP----SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195
Query: 182 SCRLIDPKSTNT--TPLAQADFDVIMKP------TAKLVETLTVIEGEKLRLECLVVGSP 233
+C N + DV+ + A L T + G + C V
Sbjct: 196 TCV-----VENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250
Query: 234 PPTVEWR---IGNDTYFRSQGRIKLSEHPEKGT-----ANSVLQIDEATMADRGNYYCHG 285
P ++W N + G ++ G VL + T D G Y C
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 286 NNVA 289
N
Sbjct: 311 GNSI 314
Score = 62.3 bits (151), Expect = 3e-11
Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 206 KPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
P E L G+ + L C G P W + T R+ +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVPSERVLVG-------- 59
Query: 265 NSVLQIDEATMADRGNYYCHGNNVAT 290
LQ+ A+ D G Y C
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQR 85
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 92.4 bits (229), Expect = 9e-22
Identities = 46/300 (15%), Positives = 83/300 (27%), Gaps = 52/300 (17%)
Query: 30 DTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSS----VDSGFAATANLT----EDNF 80
+ + +N C + W + + S G +D
Sbjct: 12 NVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLG 71
Query: 81 KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVP------------FTLK 128
YS + G S L E K+ + F ++
Sbjct: 72 IYSC-DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 129 CNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQYSCRLI 186
S ++ + K I E + + ++ + + K +D G Y+ +L
Sbjct: 131 AEKLSGNA----KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 186
Query: 187 DPKSTNTT--------------PLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLVV 230
D K+TN + + I K VE L V + L+C V
Sbjct: 187 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA 246
Query: 231 GSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
T + W ++ + I + E + L I E + D G Y +
Sbjct: 247 NIKKETHIVW-------YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299
Score = 87.7 bits (217), Expect = 5e-20
Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 18/181 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
+C+ +P + W K S ++ L +K +T + +DD G YSC
Sbjct: 20 SLNFECDKMTPKS----EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC 75
Query: 184 R-----------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS 232
LID + + P + + +G+ S
Sbjct: 76 DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLS 135
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
V + N+ + K+ H ++ T + +++ D G Y + N
Sbjct: 136 GNAKVNYIF-NEKEIFEGPKYKM--HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192
Query: 293 S 293
Sbjct: 193 H 193
Score = 51.5 bits (123), Expect = 1e-07
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 205 MKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
+ P T ++V + L EC +P W + + S E +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSW-------SKDYVSTEDSPRLEVES 53
Query: 264 AN--SVLQIDEATMADRGNYYCHGNNVATRNS 293
+ + + M D G Y C + S
Sbjct: 54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS 85
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 90.3 bits (224), Expect = 2e-21
Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
+C +P P + W K K + + G +++ S+ + D G Y+C
Sbjct: 38 KFRCPAGGNPMP----TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93
Query: 184 RLIDPKSTNT--TPLAQADFDVIMKPTAK------LVETLTVIEGEKLRLECLVVGSPPP 235
+ N + DV+ + + L + + G + C V P
Sbjct: 94 VV-----ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP 148
Query: 236 TVEWR---IGNDTYFRSQGRIKLSEHPEKG---TANSVLQIDEATMADRGNYYCHGNNVA 289
++W N + + G L G + VL + T AD G Y C +N
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Score = 59.5 bits (144), Expect = 1e-10
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
V ++ C G+P PT+ W N F+ + RI + +
Sbjct: 17 YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ- 74
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA 289
+ L ++ +D+GNY C N
Sbjct: 75 --HWSLIMESVVPSDKGNYTCVVENEY 99
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 93.0 bits (231), Expect = 2e-21
Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 19/204 (9%)
Query: 113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
K + + R ++C +P P W + ++ A + + + ++ I
Sbjct: 23 SAKDHIVDPRDNILIECEAKGNPAP----SFHWTRNSRFFNIAKDPRVSMRRRSGTLVID 78
Query: 172 ----KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC 227
+ G+Y C + T + + + ++ + V EG L L+C
Sbjct: 79 FRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQC 138
Query: 228 LVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYYCHG 285
G P P + W + R+ N L + D + +Y C+
Sbjct: 139 NPPPGLPSPVIFWMSSSMEPITQDKRVSQGH-------NGDLYFSNVMLQDMQTDYSCNA 191
Query: 286 NNVATR-NSQPNEAFVYVRVKGKS 308
T Q N + V
Sbjct: 192 RFHFTHTIQQKNPFTLKVLTTRGV 215
Score = 86.8 bits (215), Expect = 2e-19
Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 18/166 (10%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
L+C + P P I WYK + + ++ I + +D+G+Y C
Sbjct: 241 LLECIASGVPTP----DIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
+ + V P + L + GE RL C G+P PTV+W +
Sbjct: 294 ---ASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ + A + + ++ R Y C+ +N
Sbjct: 351 EPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEH 390
Score = 85.7 bits (212), Expect = 6e-19
Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 32/197 (16%)
Query: 124 PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTV-DDAG 179
P TL+CN P P I W + + R++Q + + + D
Sbjct: 133 PLTLQCNPPPGLPSP----VIFWMSSSMEPITQDK---RVSQGHNGDLYFSNVMLQDMQT 185
Query: 180 QYSC-----RLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECL 228
YSC + N L + + T + + V+ G L LEC+
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
G P P + W + G + S+ + N L+I + D G Y+C +N
Sbjct: 246 ASGVPTPDIAWY-------KKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 289 ATRNSQPNEAFVYVRVK 305
V V+
Sbjct: 298 MGSIRH--TISVRVKAA 312
Score = 52.6 bits (126), Expect = 6e-08
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 202 DVIMKPTAKLV------------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
++ M P+ + + V + + +EC G+P P+ W N +F
Sbjct: 2 EIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNI 60
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
++S GT + G Y C N
Sbjct: 61 AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKF 100
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 92.7 bits (230), Expect = 2e-21
Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 51/306 (16%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQS-----------SVDSGFAATANL 75
+ +EG P + C+L + W+ + + + G +
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168
Query: 76 TE----DNFKYS--IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV------ 123
T+ D +KY A ++ V I + Y EP + +
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITE--ATELSGRLTQSKDSITIRKTTVDDAGQ 180
+ C +P ++K K + ++ S + + T +D G
Sbjct: 229 VTMIYCMYGSNPMG----YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 284
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
Y+C + + V+ P K + + V +G+ + + C V G P P V
Sbjct: 285 YTCEVDNGVGKPQK--HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298
W S GR ++ +S L I D+G Y C N
Sbjct: 343 WSHNAKPL--SGGRATVT--------DSGLVIKGVKNGDKGYYGCRATNEHGDKY----F 388
Query: 299 FVYVRV 304
V+V
Sbjct: 389 ETLVQV 394
Score = 88.4 bits (219), Expect = 6e-20
Identities = 52/308 (16%), Positives = 93/308 (30%), Gaps = 46/308 (14%)
Query: 30 DTEIMEGAPINISCILTIFEQ---VKWQLNGRNINQSSVDSGFAATA-NLT------EDN 79
+ E P + CI+ +Q W+ +G++ N ++ +L D
Sbjct: 15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDE 74
Query: 80 FKYSIHEAILESGYVQS---SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS--P 134
Y A +G S S + A + K PF L C + + P
Sbjct: 75 GHYQC-FAETPAGVASSRVISFRKTYLIASP----AKTHEKTPIEGRPFQLDCVLPNAYP 129
Query: 135 PPGDDYQIVWYKGNKSI---TEATELSGRLTQSKDS----ITIRKTTVDDAGQYSCRLID 187
P I W K + T+ R+T D + K V D +Y C +
Sbjct: 130 KP----LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN 185
Query: 188 PKSTNTTPLAQADFDVIMKPTAKLV---------ETLTVIEGEKLRLECLVVGSPPPTVE 238
L + + + K + + + G+ + C+ +P
Sbjct: 186 AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN 245
Query: 239 W-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
+ + G D + RI T+ L D G Y C +N + + +
Sbjct: 246 YFKNGKDVNGNPEDRITRHNR----TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK-HS 300
Query: 298 AFVYVRVK 305
+ V
Sbjct: 301 LKLTVVSA 308
Score = 86.1 bits (213), Expect = 4e-19
Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 12/207 (5%)
Query: 113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+P +F P L+C + + + W K KS E + L + + S+
Sbjct: 12 QPAEVLFRENNPTVLECIIEGNDQG---VKYSWKKDGKSYNW-QEHNAALRKDEGSLVFL 67
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV- 230
+ D G Y C P ++ + ++ AK T IEG +L+C++
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT-HEKTPIEGRPFQLDCVLPN 126
Query: 231 GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR---GNYYCHGNN 287
P P + W+ + + L T D Y C N
Sbjct: 127 AYPKPLITWKKRLSGADPNADVTDFDRR-ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN 185
Query: 288 VAT-RNSQPNEAFVYVRVKGKSFGYDR 313
A E + K S
Sbjct: 186 AAVDEEVVLVEYEIKGVTKDNSGYKGE 212
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 91.8 bits (227), Expect = 2e-21
Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 21/194 (10%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C + I WYK N+ + + +QS ++ I ++D+G+Y C
Sbjct: 145 GIDLYCGILYAKH--YNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDC 199
Query: 184 RLIDP---KSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGEKLRLECLVVGSP--- 233
+ + VI + L + V GE + C V +
Sbjct: 200 YVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLV 259
Query: 234 -PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY-CHGNNVATR 291
++W + + G + L + T GN Y C G+N
Sbjct: 260 DDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319
Query: 292 NSQPNEAFVYVRVK 305
+ V ++
Sbjct: 320 KT----LTTTVVLE 329
Score = 71.8 bits (175), Expect = 2e-14
Identities = 25/191 (13%), Positives = 47/191 (24%), Gaps = 24/191 (12%)
Query: 124 PFTLKCNVTSPPP------GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV-D 176
PF+ KC D + W K K+ + I T D
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR-----RPLNRRVKNGDLWIANYTSND 100
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVV-GSPP 234
+Y C + + P+ L + + L C ++
Sbjct: 101 SHRRYLCTVTT--KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHY 158
Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
+ W + + + + + L I + D G Y C+ + R
Sbjct: 159 NNITWYKN--------NQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
Query: 295 PNEAFVYVRVK 305
+
Sbjct: 211 DIVVSRCKILT 221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 7/107 (6%)
Query: 203 VIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-RSQGRIKLSEHP 259
+ P+ GE +C + + + ++ G+ + +
Sbjct: 25 KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84
Query: 260 EKGTANSVLQIDEATMADRGNYY-CHGNNVATRNSQPNEAFVYVRVK 305
N L I T D Y C Q ++R
Sbjct: 85 R--VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ-GIVRSHIRKP 128
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 89.1 bits (221), Expect = 3e-21
Identities = 45/208 (21%), Positives = 66/208 (31%), Gaps = 32/208 (15%)
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSI-TEATELSGRLTQSKD--- 166
P + P TL C P P I WYKG + + T+ +
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTP----TIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 167 ---SITIRKTTVDDAGQYSC----RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIE 219
I + + D G Y C L + S + + D + + V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP----SDVMVAV 125
Query: 220 GEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
GE +EC G P PT+ W+ RI + L I +D
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG--------KLMITYTRKSDA 177
Query: 279 GNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
G Y C G N+ R S+ A + V +
Sbjct: 178 GKYVCVGTNMVGERESEV--AELTVLER 203
Score = 51.0 bits (122), Expect = 9e-08
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRSQGRIKLSEHPEKGTANSV 267
L V +GE L C G P PT+EW + D R+ L P
Sbjct: 17 SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---PSGSLFFLR 73
Query: 268 LQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
+ + D G Y C N S +A + V + F
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSH--DASLEVAILRDDF 114
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 89.6 bits (222), Expect = 3e-21
Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
+C +P P I W K + + G + + S+ + D G Y
Sbjct: 32 TVRFRCPAAGNPTP----SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 87
Query: 182 SCRLIDPKSTNTTPLAQADF--DVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSP 233
+C N + + DV+ + + + T + G + C V
Sbjct: 88 TCV-----VENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 142
Query: 234 PPTVEWR---IGNDTYFRSQGRIKLSEHPEKGT----ANSVLQIDEATMADRGNYYCHGN 286
P ++W N + G ++ + A+ L++ + D G Y C
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Query: 287 NVA 289
N
Sbjct: 203 NFI 205
Score = 60.3 bits (146), Expect = 7e-11
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
+P + L V +R C G+P P++ W N FR + RI + +
Sbjct: 13 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQ- 70
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA 289
L ++ +DRGNY C N
Sbjct: 71 --QWSLVMESVVPSDRGNYTCVVENKF 95
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 91.5 bits (227), Expect = 5e-21
Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 16/193 (8%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKD-SITIRKTTVDDA-GQ 180
+KC + S + W+ ++ E G+ + IR+ +D
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAK--------LVETLTVIEGEKLRLECLVVGS 232
Y CR + T A VI +P + + + L ++ + L C G
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
P P+ W + R Q + + + L I +A + D G Y C NN
Sbjct: 240 PAPSFRWYKFIEGTTRKQA---VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 293 SQPNEAFVYVRVK 305
S E + V
Sbjct: 297 SV--ETVLTVTAP 307
Score = 90.4 bits (224), Expect = 1e-20
Identities = 55/302 (18%), Positives = 93/302 (30%), Gaps = 53/302 (17%)
Query: 30 DTEIMEGAPINISCILTIFE-----QVKWQLNGR--NINQSSVDSGFAATAN-------- 74
++ G I C++ F V W + + D + +
Sbjct: 112 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV 171
Query: 75 LTEDNF-KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-------PFT 126
ED + Y +G + S R+ P+ + +
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS 231
Query: 127 LKCNVT-SPPPGDDYQIVWYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C P P WYK + T +A L+ R+ Q ++ I+ V+D+G+Y C
Sbjct: 232 LLCPAQGFPAP----SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
++ + V +AK+ T TV G C G+P TV W
Sbjct: 288 V---VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 343
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
+ SVL+I+ D+G Y C N A +
Sbjct: 344 DGKAIGHS--------------ESVLRIESVKKEDKGMYQCFVRNDRESAE----ASAEL 385
Query: 303 RV 304
++
Sbjct: 386 KL 387
Score = 70.7 bits (173), Expect = 7e-14
Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 28/213 (13%)
Query: 114 PKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
F ++C + +P P +I+W + + + R S +
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMP----EIIWIRSDGTAVGDVP-GLRQISSDGKLVFPP 65
Query: 173 TTVDD------AGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLE 226
+D A Y+C + + + V A V VI G ++
Sbjct: 66 FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIK 124
Query: 227 CLV---VGSPPPTVEWRIGNDTYF----RSQGRIKLSEHPEKGTANSVLQIDEATMAD-R 278
CL+ V V W + + G+ + + L I E D
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP-------SGELHIREVGPEDGY 177
Query: 279 GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311
+Y C + T ++ + + +
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSS 210
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 86.5 bits (214), Expect = 1e-20
Identities = 33/181 (18%), Positives = 55/181 (30%), Gaps = 34/181 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL CN + + W+ ++ S+ I +D+G+Y C+
Sbjct: 23 TLTCNGNNFFEVSSTK--WFHNGS----------LSEETNSSLNIVNAKFEDSGEYKCQ- 69
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+V V+EG+ L L C +
Sbjct: 70 ----HQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY------KVI 119
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRV 304
Y++ +K N + I AT+ D G YYC G S+P + + V
Sbjct: 120 YYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEP----LNITV 169
Query: 305 K 305
Sbjct: 170 I 170
Score = 41.8 bits (98), Expect = 7e-05
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 22/95 (23%)
Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+ +GE + L C + +W F + + NS L I A
Sbjct: 15 RIFKGENVTLTCNGNNFFEVSSTKW-------FHNGSLSE--------ETNSSLNIVNAK 59
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
D G Y C + +E VY+ V
Sbjct: 60 FEDSGEYKC-----QHQQVNESEP-VYLEVFSDWL 88
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 87.4 bits (216), Expect = 1e-20
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 37/191 (19%)
Query: 126 TLKCNVTSPP-PGDDYQIVWYKGNKSITEATE------------------------LSGR 160
L C T P I W + S
Sbjct: 19 YLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND 78
Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIE 219
+ SI + + D G Y C++ + V++KP+ +
Sbjct: 79 VKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN---KKFLLTVLVKPSGTRCFVDGSEEI 135
Query: 220 GEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
G +L+C GS P EW+ + + + V+ + A+
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEWQ-------KLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188
Query: 279 GNYYCHGNNVA 289
G Y C N
Sbjct: 189 GTYSCTVQNRV 199
Score = 46.2 bits (109), Expect = 4e-06
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 29/119 (24%)
Query: 213 ETLTVIEGEKLRLECLVVGSP----PPTVEW--------------------RIGNDTYFR 248
+ + +GE L C SP P +EW +I ++ Y
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
+GR+ + + K + ++ + + ++D G Y C + V K
Sbjct: 68 LKGRVHFTSNDVK-SGDASINVTNLQLSDIGTYQCKVKKAP----GVANKKFLLTVLVK 121
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 88.9 bits (220), Expect = 1e-20
Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 13/189 (6%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C +T P + + + IRK V D+ Y C
Sbjct: 106 EAVLPCLITDPAL--KDSVSLMREGGRQV--LRKTVYFFSPWRGFIIRKAKVLDSNTYVC 161
Query: 184 R-LIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEWR 240
+ +++ + + +T + V +P +E L I GE ++ C +
Sbjct: 162 KTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL 221
Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
DT ++ K L ++ D G Y C +N + A +
Sbjct: 222 KRGDTKLEIPLNSDFQDNYYKK--VRALSLNAVDFQDAGIYSCVASNDVGTRT----ATM 275
Query: 301 YVRVKGKSF 309
+V
Sbjct: 276 NFQVVESHH 284
Score = 77.3 bits (190), Expect = 2e-16
Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 28/189 (14%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
TL+C + W + T E G ++T R T + G Y
Sbjct: 21 TVTLRCVSNGS-------VEWDGPISPYWTLDPESPGS------TLTTRNATFKNTGTYR 67
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPP-PTVEW 239
C ++ + V L + +TV+EG++ L CL+ +V
Sbjct: 68 CTELEDPMAGS---TTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSL 124
Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
+ S I +A + D Y C R S +
Sbjct: 125 MREGGRQVLRKTVYFFSP-------WRGFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIW 176
Query: 300 VYVRVKGKS 308
+ V
Sbjct: 177 LKVNRVHPE 185
Score = 53.8 bits (129), Expect = 2e-08
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
L V GE + L C+ G +VEW Y+ + S L
Sbjct: 12 PELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE----------SPGSTLTTRN 57
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
AT + G Y C S +YV+ S+
Sbjct: 58 ATFKNTGTYRCTELEDPMAGST--TIHLYVKDPAHSW 92
Score = 49.2 bits (117), Expect = 6e-07
Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 15/168 (8%)
Query: 30 DTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLT------EDNF 80
+ ++EG + C++T + + V G F+ D+
Sbjct: 98 EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSN 157
Query: 81 KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV--PFTLKCNVTSPPPGD 138
Y + + +++ I+ + + C+ T+
Sbjct: 158 TYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV-- 215
Query: 139 DYQIVWYKGNK--SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
+ ++ +G+ I ++ + ++++ DAG YSC
Sbjct: 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 86.8 bits (214), Expect = 2e-20
Identities = 37/216 (17%), Positives = 62/216 (28%), Gaps = 18/216 (8%)
Query: 97 SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE 156
S FI ++ G I + + + C + + +
Sbjct: 4 SPFIASVSDQHGVVYIT----ENKNK-TVVIPCLGSISNL----NVSLCARYPEKRFVPD 54
Query: 157 LSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTP-LAQADFDVIMKPTAKLVET 214
+ SK TI + AG C I+ +S + + I
Sbjct: 55 GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 114
Query: 215 LTVIEGEKLRLECLVVGSPPPTVE--WRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQ 269
+ + GEKL L C ++ W + + +K E S L
Sbjct: 115 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 174
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
ID T +D+G Y C ++ FV V
Sbjct: 175 IDGVTRSDQGLYTCAASSGLMTKKN--STFVRVHED 208
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 88.7 bits (220), Expect = 2e-20
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 24/188 (12%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQY 181
TL C VT P P + WY+ K I A L R+ + K + I T DDA Y
Sbjct: 23 TLVCKVTGHPKP----IVKWYRQGKEII-ADGLKYRIQEFKGGYHQLIIASVTDDDATVY 77
Query: 182 SCRLIDPKSTNTTP--LAQADFDVIMKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
R + + + L I P T + + + + GE + ++ G P P +
Sbjct: 78 QVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 239 WRIGNDTYFRSQGRIKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
W+ G D I + H + + S++ + D G Y N + +
Sbjct: 138 WQKGQD-------LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK- 189
Query: 296 NEAFVYVR 303
+ V
Sbjct: 190 -TVELDVA 196
Score = 60.9 bits (148), Expect = 7e-11
Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
L V L C V G P P V+W + ++ E L I T
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVT 70
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
D Y N S A + V V
Sbjct: 71 DDDATVYQVRATNQGGSVS--GTASLEVEVP 99
Score = 50.5 bits (121), Expect = 2e-07
Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)
Query: 30 DTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSSVDSGFAATANLT----------E 77
+ + + + C +T + VKW G+ I + +
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72
Query: 78 DNFKYSIHEAILESGYVQSSLFIPRMNAITGNYD-IEPKYKVFEYRV--PFTLKCNVT-S 133
D Y + A + G V + + + ++K +
Sbjct: 73 DATVYQV-RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT-IRKTTVDDAGQYSCRL 185
P P I W KG I +T+S S+ DAG Y
Sbjct: 132 PDP----VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 88.3 bits (219), Expect = 3e-20
Identities = 54/302 (17%), Positives = 98/302 (32%), Gaps = 48/302 (15%)
Query: 30 DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSS-----VDSGFAAT-----AN 74
D + G + C +V W G+ +N D A
Sbjct: 15 DQIGVSGGVASFVCQ---ATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71
Query: 75 LTEDNFKYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKC 129
D Y A G + + ++ + N D+ P+ KV E T+ C
Sbjct: 72 TPRDENVYEC-VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLC 130
Query: 130 NVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRLID 187
+ +P P +I W+K + + +GR+ Q + ++ I + D G+Y C +
Sbjct: 131 AASGNPDP----EITWFKDFLPVDPSAS-NGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 188 PKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ A V + L + ++ G + + C+ VGSP P V+W
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM-QGAE 244
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ + + ++ + D NY C + EA + VK
Sbjct: 245 DLTPEDDMPVGR----------NVLELTDVKDSANYTCVAMSSLGV----IEAVAQITVK 290
Query: 306 GK 307
Sbjct: 291 SL 292
Score = 57.5 bits (139), Expect = 1e-09
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ + G C G P P V W SQ + +A +VL+I
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIE---FDESAGAVLRIQP 69
Query: 273 A-TMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
T D Y C N + A + V +
Sbjct: 70 LRTPRDENVYECVAQNSVGEIT--VHAKLTVLRE 101
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 85.7 bits (212), Expect = 4e-20
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 34/182 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TLKC P Q W+ I+ S I TVDD+G+Y C+
Sbjct: 26 TLKCQGAYSPEDQSTQ--WFHNESLISS----------QASSYFIDAATVDDSGEYRCQ- 72
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ +T +V + E + + L C + T
Sbjct: 73 ----TQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH------KVT 122
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVRV 304
Y ++ K H NS I +AT+ D G+Y+C G + +S+ V + +
Sbjct: 123 YLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSET----VQITI 172
Query: 305 KG 306
Sbjct: 173 TQ 174
Score = 41.0 bits (96), Expect = 2e-04
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
V+E + + L+C SP + +W F ++ I + S ID AT
Sbjct: 18 RVLEKDSVTLKCQGAYSPEDQSTQW-------FHNESLIS--------SQASSYFIDAAT 62
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ D G Y C T+ S ++ V + V
Sbjct: 63 VDDSGEYRC-----QTQLSTLSDP-VQLEV 86
Score = 27.2 bits (60), Expect = 6.7
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 15 VHQSISADGKITYFGDTEIMEGAPINISCILTI---FEQVKWQLNGRNINQSSVDSGF 69
V + + E PI++ C +V + NG+ +S F
Sbjct: 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDF 139
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 85.0 bits (210), Expect = 4e-20
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 49/198 (24%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-----------------RLTQSKDSI 168
L C + Q W N+ + S Q +
Sbjct: 14 ELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECL 228
I+ ++D+ Y C + D K + F + +++G+ L L
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLV----FGLTANSDT------HLLQGQSLTLTLE 120
Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
P+V+ R S + L + + + D G + C
Sbjct: 121 SPPGSSPSVQCR---------------SPRGKNIQGGKTLSVSQLELQDSGTWTC----T 161
Query: 289 ATRNSQPNEAFVYVRVKG 306
+N + E + + V
Sbjct: 162 VLQNQKKVEFKIDIVVLA 179
Score = 55.0 bits (132), Expect = 3e-09
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK----------- 261
+ + +G+ + L C W+ N L++ P K
Sbjct: 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62
Query: 262 -GTANSVLQIDEATMADRGNYYCHGNNVATR 291
N L I + D Y C +
Sbjct: 63 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEE 93
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 85.4 bits (211), Expect = 5e-20
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 30/191 (15%)
Query: 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAG 179
+V F ++ S ++ + K I E + + ++ + + K +D G
Sbjct: 19 QVRFWMQAEKLSGNA----KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 74
Query: 180 QYSCRLIDPKSTNTT-----------PLAQADF---DVIMKPTAKLVETL--TVIEGEKL 223
Y+ +L D K+TN + +A+F + I K VE L V +
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 134
Query: 224 RLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
L+C V T + W I + E + L I E + D G Y
Sbjct: 135 LLKCKVANIKKETHIVWYKDERE-------ISVDEKHDFKDGICTLLITEFSKKDAGIYE 187
Query: 283 CHGNNVATRNS 293
+ ++
Sbjct: 188 VILKDDRGKDK 198
Score = 54.6 bits (131), Expect = 5e-09
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+ ++E ++R S V + N+ + K+ G + ++
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKMHIDRNTGIIE--MFME 66
Query: 272 EATMADRGNYYCHGNNVATRNS 293
+ D G Y + N
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNH 88
Score = 53.4 bits (128), Expect = 1e-08
Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 38/196 (19%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSS------VDSGFAAT---ANLT- 76
EI+E + +V + N + I + + L
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 70
Query: 77 EDNFKYSIHEAILESGYVQSSL--FIPRMNAITGNYDIEPKYKVFEYRVPF--------- 125
ED Y+ + S++ + + + + + + F
Sbjct: 71 EDEGTYTF-QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 129
Query: 126 -----TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDA 178
LKC V + + IVWYK + I+ + ++ I + + DA
Sbjct: 130 GECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDA 183
Query: 179 GQYSCRLIDPKSTNTT 194
G Y L D + + +
Sbjct: 184 GIYEVILKDDRGKDKS 199
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 84.5 bits (209), Expect = 6e-20
Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 34/181 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TLKC P + Q W+ I+ S I TV+D+G+Y C+
Sbjct: 26 TLKCQGAYSPEDNSTQ--WFHNESLISS----------QASSYFIDAATVNDSGEYRCQ- 72
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
+ +T +V + E + + L C + T
Sbjct: 73 ----TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH------KVT 122
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVRV 304
Y ++ K H NS I +AT+ D G+Y+C G + +S+ V + +
Sbjct: 123 YLQNGKDRKYFHH------NSDFHIPKATLKDSGSYFCRGLVGSKNVSSET----VNITI 172
Query: 305 K 305
Sbjct: 173 T 173
Score = 42.6 bits (100), Expect = 3e-05
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+V+E + + L+C SP + +W F ++ I + S ID AT
Sbjct: 18 SVLEKDSVTLKCQGAYSPEDNSTQW-------FHNESLIS--------SQASSYFIDAAT 62
Query: 275 MADRGNYYCHGNN 287
+ D G Y C N
Sbjct: 63 VNDSGEYRCQTNL 75
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 88.3 bits (219), Expect = 7e-20
Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 25/206 (12%)
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEAT---ELSGRLTQSKD- 166
I+ K + TL C+ P P +I W + T L GR+
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIP----EITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 167 ---SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEK 222
S+ I+ + D+G+Y C S D+ P EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCE---AASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117
Query: 223 LRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
+ + C V +PP ++ WR ++ +K +L+I + D G Y
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSDNDFGRY 173
Query: 282 YCHGNNVATRNSQPNEAFVYVRVKGK 307
C N + +
Sbjct: 174 NCTATNHIGTRF----QEYILALADV 195
Score = 60.6 bits (147), Expect = 1e-10
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR------IGNDTYFRSQGRIKLSEHP 259
+P ++ T E ++ L C G P P + W+ + GRI++
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ L I + ++D G Y C + + ++ +
Sbjct: 61 GSSS----LHIKDVKLSDSGRYDCEAASRIGGHQ--KSMYLDIEYA 100
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 85.0 bits (210), Expect = 9e-20
Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 26/183 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATE--------LSGRLTQSKDSITIRKTT 174
P L C + P ++ W T R+T IT + T
Sbjct: 21 PVKLSCAYSGFSSP----RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADF----DVIMKPT-AKLVETLTVIEGEKLRLECLV 229
+D G Y+C + + + V++ P+ + + G + L C
Sbjct: 77 REDTGTYTCM-----VSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 230 V-GSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
GSPP W R + L D + +D G Y C
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 287 NVA 289
N
Sbjct: 192 NGY 194
Score = 66.5 bits (162), Expect = 4e-13
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-RIGND--TYFRSQGRIKLSEHPEKGTANSVLQ 269
+ + E ++L C G P VEW D +I S + +
Sbjct: 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
T D G Y C + + + + V V
Sbjct: 72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP 107
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 87.8 bits (217), Expect = 1e-19
Identities = 23/191 (12%), Positives = 47/191 (24%), Gaps = 28/191 (14%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTTVDD 177
P ++C + + W NK++ E + R + +D
Sbjct: 244 PLWIRCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPP 234
G Y+C S+ A ++ K E + + E+ P
Sbjct: 302 TGYYTCS-----SSKHPS-QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ 355
Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
W + + + G Y H N + ++
Sbjct: 356 IRCTWTFSRKS---------FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406
Query: 295 PNEAFVYVRVK 305
+ +R
Sbjct: 407 --MFTLNIRSG 415
Score = 77.4 bits (190), Expect = 5e-16
Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 16/166 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL+ V +P +W + S+ + S+ I K T AG+Y
Sbjct: 65 SITLQVLVDAPGNI---SCLWVFKHSSLNCQ-PHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
+ + T + L + L C+ P P VEW
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW---- 173
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
E + E + C N
Sbjct: 174 --VLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNEL 214
Score = 77.0 bits (189), Expect = 6e-16
Identities = 39/311 (12%), Positives = 77/311 (24%), Gaps = 74/311 (23%)
Query: 30 DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA 87
E+ A I + ++ W ++N + +F
Sbjct: 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLN--------------CQPHFDLQNR-- 100
Query: 88 ILESGYVQSSLFIPRMNAI-TGNY---------DIEPKYKVFEYRVPF------------ 125
S+ I +M G Y + + V
Sbjct: 101 ------GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154
Query: 126 ---TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY 181
L C P P + W + E S + K+ + +
Sbjct: 155 NQDALVCISESVPEP----IVEWVLCDSQGESCKEESPAVV-KKEEKVLHE---LFGTDI 206
Query: 182 SCRLIDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVE 238
C + N + + + + L + GE L + C V + +
Sbjct: 207 RCC-----ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTA--NSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296
W + + ++S + T + D G Y C + +++
Sbjct: 262 WEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---- 316
Query: 297 EAFVYVRVKGK 307
A V + KG
Sbjct: 317 -ALVTIVEKGF 326
Score = 73.2 bits (179), Expect = 1e-14
Identities = 20/136 (14%), Positives = 35/136 (25%), Gaps = 14/136 (10%)
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
++V + Y P+ Q+ T + V + L+ LV
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCALRPQS------SGTVYEAAAVEVDVSASITLQVLV 72
Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ W + Q L + I + T G Y + A
Sbjct: 73 DAPGNISCLWVF-KHSSLNCQPHFDLQNRG-----VVSMVILKMTETQAGEYLLFIQSEA 126
Query: 290 TRNSQPNEAFVYVRVK 305
T + V +R
Sbjct: 127 TNYTI--LFTVSIRNT 140
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 86.3 bits (213), Expect = 2e-19
Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 26/202 (12%)
Query: 126 TLKCNVTSPPPGDD--YQIVWYKGNKSITEATELSGRLTQSKD----------------- 166
TL C + P Q+ W + +S + A + +
Sbjct: 19 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLR 224
S+ + V+D G Y+C + + + V+ KP + + +
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRS--VDIWLRVLAKPQNTAEVQKVQLTGEPVPM 136
Query: 225 LECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
C+ G PP + W T S+ + ++ D N C
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGM--PNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC 194
Query: 284 HGNNVATRNSQPNEAFVYVRVK 305
+ + Q + V
Sbjct: 195 KVEHESFEKPQLLTVNLTVYYP 216
Score = 81.7 bits (201), Expect = 6e-18
Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 67/303 (22%)
Query: 30 DTEIMEGAPINISCILT-------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKY 82
G + + C L Q+ W +G + + + + ++ +
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY---SESKRL 65
Query: 83 SIHEAILESGYVQSSLFIPR-------------MNAITGNYD--------IEPKYKVFEY 121
A L + +SL + + G+ +P+
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 122 RV------PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATE---LSGRLTQSKDSITI 170
+V +C T PP QI W+ + ++ +
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPA----QITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 171 RKTTVDDAGQYSCR-----LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
++ D +C+ P+ +V + + + + L
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY----DNNWYLGQNEATL 237
Query: 226 ECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
C +P PT W L + L I C+
Sbjct: 238 TCDARSNPEPTGYNWSTTMGP---------LPPFAV--AQGAQLLIRPVDKPINTTLICN 286
Query: 285 GNN 287
N
Sbjct: 287 VTN 289
Score = 51.3 bits (122), Expect = 1e-07
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 25/121 (20%)
Query: 202 DVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-----VEW------------RIGND 244
DV+++ + G+ + L C + + W
Sbjct: 1 DVVVQAP----TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56
Query: 245 TYFRSQGRIKLSEHPEKGTA-NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
+ R++ N+ L++ + D GNY C T +++R
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL---FVTFPQGSRSVDIWLR 113
Query: 304 V 304
V
Sbjct: 114 V 114
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 82.3 bits (203), Expect = 8e-19
Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 33/202 (16%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEA--------TELSGRLTQSKDSITIRKTT 174
L C + P ++ W S T + R+T S IT T
Sbjct: 18 SIKLTCTYSGFSSP----RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAKLV-ETLTVIEGEKLRLECLV 229
D G+Y+C + + V++ P+ + +V G + L C
Sbjct: 74 RKDNGEYTCM-----VSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE 128
Query: 230 V-GSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
GSPP W + +++ + S + + L D T D G YYC
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID--PKSGDLIFDPVTAFDSGEYYC 186
Query: 284 HGNNVATRNSQPNEAFVYVRVK 305
N + ++
Sbjct: 187 QAQNGY--GTAMRSEAAHMDAV 206
Score = 66.5 bits (162), Expect = 3e-13
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT---YFRSQGRIKLSEHPEKGTANSVLQ 269
+ V E E ++L C G P VEW+ + +I ++S +
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
T D G Y C + +N E +++ V
Sbjct: 69 FSSVTRKDNGEYTCMVSEEGGQNYG--EVSIHLTV 101
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 84.8 bits (209), Expect = 9e-19
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 49/198 (24%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-----------------LTQSKDSI 168
L C + Q W N+ + S Q +
Sbjct: 13 ELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECL 228
I+ ++D+ Y C + D K F + +++G+ L L
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLL----VFGLTANSDT------HLLQGQSLTLTLE 119
Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
P+V+ R +G+ L + + + D G + C
Sbjct: 120 SPPGSSPSVQCR-------SPRGKNIQG--------GKTLSVSQLELQDSGTWTC----T 160
Query: 289 ATRNSQPNEAFVYVRVKG 306
+N + E + + V
Sbjct: 161 VLQNQKKVEFKIDIVVLA 178
Score = 62.1 bits (150), Expect = 4e-11
Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 40/196 (20%)
Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
TL P + G+ Q ++++ + + D+G ++C
Sbjct: 115 TLTLESPPGSSP----SVQCRSPR----------GKNIQGGKTLSVSQLELQDSGTWTCT 160
Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGE-------------------KLRL 225
+ + D+++ K + EGE +L
Sbjct: 161 V-----LQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215
Query: 226 ECLVVGSPPPTVEWRIGNDT-YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
+ S + + + N + + + +K + L A GN
Sbjct: 216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA 275
Query: 285 GNNVATRNSQPNEAFV 300
+ Q V
Sbjct: 276 LEAKTGKLHQEVNLVV 291
Score = 58.7 bits (141), Expect = 6e-10
Identities = 28/281 (9%), Positives = 72/281 (25%), Gaps = 47/281 (16%)
Query: 24 KITYFGDTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSS----------VDSG-FA 70
+T DT +++G + ++ V+ + Q DSG +
Sbjct: 99 GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWT 158
Query: 71 ATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCN 130
T + ++ I +L S ++ + ++ + + +
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218
Query: 131 VTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD----DAGQYSCRLI 186
+ S+ T+ K + + +G + L
Sbjct: 219 R-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL- 276
Query: 187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
++ + + V+ + L C V G P + +
Sbjct: 277 --EAKTGKLHQEVNLVVM------------RATQLQKNLTCEVWGPTSPKLML-----SL 317
Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
K+S+ + + G + C ++
Sbjct: 318 KLENKEAKVSKR---------EKAVWVLNPEAGMWQCLLSD 349
Score = 54.0 bits (129), Expect = 2e-08
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPE----- 260
+ + +G+ + L C W+ +GN F ++G KL++ +
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 261 KGTANSVLQIDEATMADRGNYYCHGNNVATR 291
N L I + D Y C +
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEE 92
Score = 39.0 bits (90), Expect = 0.001
Identities = 26/188 (13%), Positives = 46/188 (24%), Gaps = 39/188 (20%)
Query: 30 DTEIMEGAPINISCILTIFEQ-------VKWQLNGRNINQSSVD---SGFAATANLTEDN 79
EG + S L + + WQ + ++S + + +
Sbjct: 185 IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQD 244
Query: 80 FKYSIHEAILESGYVQSSLFIPRM-NAITGNY---------DIEPKYKVFEYRV---PFT 126
K + + + +L A +GN + + + R
Sbjct: 245 PKLQMGK----KLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
L C V P + NK S R +AG + C L
Sbjct: 301 LTCEVWGPTS-PKLMLSLKLENKEAKV----SKREK-------AVWVLNPEAGMWQCLLS 348
Query: 187 DPKSTNTT 194
D
Sbjct: 349 DSGQVLLE 356
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 83.6 bits (206), Expect = 1e-18
Identities = 46/303 (15%), Positives = 80/303 (26%), Gaps = 46/303 (15%)
Query: 24 KITYFGDTEIM-EGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLT-EDNFK 81
I I+ G ++++CI + V+W
Sbjct: 14 SIHPAQSELIVEAGDTLSLTCIDP--DFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGT 71
Query: 82 YS--IHEAILESGYVQ----SSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPP 135
Y+ + S YV + LF+ E ++C +T P
Sbjct: 72 YTCSNSNGLTSSIYVFVRDPAKLFLV-----------GLPLFGKEDS-DALVRCPLTDPQ 119
Query: 136 PGDDYQIVWYKGN-KSITEATELSGRLTQSKDSITIRK-TTVDDAGQYSCRLIDPKSTNT 193
Q + + KS+ K ITI+ C +
Sbjct: 120 V---SQYSLIECDGKSLPTDLTFV---PNPKAGITIKNVKRAYHRLCVRCAA----QRDG 169
Query: 194 TPLAQADFDVIMKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDT 245
T L F + ++ K + + + +G+ + C + W N
Sbjct: 170 TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229
Query: 246 YFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
S H L I A + D G + C+ NN + + V
Sbjct: 230 PQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV--TTTLKVV 287
Query: 304 VKG 306
KG
Sbjct: 288 EKG 290
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 81.6 bits (201), Expect = 2e-18
Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 28/187 (14%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN---------------KSITEATELSGRLTQSKD-SIT 169
L + WYKGN SGR + S+
Sbjct: 18 LLLVHNLPLAL---GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
+ T+ D G Y+ + D T + + V TV E + + L C +
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-L 133
Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNV 288
++W N + R+ LS++ NS+L+ID D G Y C N V
Sbjct: 134 SNDIGANIQWLF-NSQSLQLTERMTLSQN------NSILRIDPIKREDAGEYQCEISNPV 186
Query: 289 ATRNSQP 295
+ R S
Sbjct: 187 SVRRSNS 193
Score = 41.6 bits (97), Expect = 1e-04
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDT---------YFRSQGRIKLSEHPEKGT--A 264
V E + L + W GN T S + + +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
N L TM D G Y + R +Q F +
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ 108
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 80.6 bits (199), Expect = 2e-18
Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 28/186 (15%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQ 180
P L C+V P I W K + +L +++ ++++ DAG+
Sbjct: 19 PVKLNCSVEGMEEP----DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPP-TVE 238
Y C++ D T + V P + + L V +L C VG P P T+
Sbjct: 75 YWCQVEDGGETEIS--QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNE 297
W G +I + SVL + T + C +N+ +S
Sbjct: 133 WWRGTT-------KI-----GGPAPSPSVLNVTGVT--QSTMFSCEAHNLKGLASS--RT 176
Query: 298 AFVYVR 303
A V+++
Sbjct: 177 ATVHLQ 182
Score = 63.3 bits (154), Expect = 3e-12
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
LTV +G+ ++L C V G P ++W + G Q I +SE G L +
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF----LSLK 65
Query: 272 EATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRV 304
+D G Y+C + T SQP ++ V
Sbjct: 66 SVERSDAGRYWCQVEDGGETEISQP--VWLTVEG 97
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 83.4 bits (205), Expect = 2e-18
Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 35/208 (16%)
Query: 124 PFTLKCNV--------TSPPPGDDYQIVWYKGNKSITEATELS-----GRLTQSKDSITI 170
P +KC + S ++WY + ++ R+++ KD +
Sbjct: 24 PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA-----KLVETLTVIEGEKLRL 225
R T ++D G Y+C L + + +V+ K + KL IE R+
Sbjct: 84 RPTLLNDTGNYTCMLRNTTYCSK---VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 226 EC-----LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
C S PT+ W G K+ L A +++ GN
Sbjct: 141 TCPNVDGYFPSSVKPTITWY---------MGCYKIQNFNNVIPEGMNLSFLIALISNNGN 191
Query: 281 YYCHGNNVATRNSQPNEAFVYVRVKGKS 308
Y C + + V+V G
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Score = 78.0 bits (191), Expect = 2e-16
Identities = 46/333 (13%), Positives = 90/333 (27%), Gaps = 57/333 (17%)
Query: 22 DGKITYFGDTEIMEGAPINISCILTIFE-------------QVKWQLNGRNINQSSVDSG 68
D + ++ E P I C L + W ++ + +
Sbjct: 8 DWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINF 67
Query: 69 FAATANLTEDNFKYSIHEAILE-SG-------------YVQSSLFIPRMNAITGNYDIEP 114
++++ +L +G V L + + ++ + P
Sbjct: 68 RLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLP 127
Query: 115 KYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
+K++ + C P I WY G I + +++
Sbjct: 128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN----FNNVIPEGMNLSFLI 183
Query: 173 TTVDDAGQYSCRLIDPK-STNTTPLAQADFDVIMKPTAKLV---------ETLTVIEGEK 222
+ + G Y+C + P+ V+ P + GE+
Sbjct: 184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243
Query: 223 LRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSE-----HPEKGTANSVLQIDEA 273
L + C V V W I + ++E E T +L I +
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303
Query: 274 TMADRG-NYYCHGNNVATRNSQPNEAFVYVRVK 305
T D +Y CH + V+ K
Sbjct: 304 TSEDLKRSYVCHARSAKGE----VAKAAKVKQK 332
Score = 50.3 bits (119), Expect = 4e-07
Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 13/118 (11%)
Query: 213 ETLTVIEGEKLRLEC-----------LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
+ V E E R++C S T+ W +
Sbjct: 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74
Query: 262 GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQ 319
VL + D GNY C N + + V K F +H+
Sbjct: 75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKV--AFPLEVVQKDSCFNSPMKLPVHK 130
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 78.9 bits (194), Expect = 1e-17
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 28/185 (15%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----------------TQSKDSI 168
TL G + ++ W+K + + + +
Sbjct: 10 TLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFL 69
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLEC 227
+ + G Y CR+ ++ T Q V+ T + E + L + C
Sbjct: 70 VVTAANISHDGNYLCRMKLGETEVT---KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTC 126
Query: 228 LVVGSPPPTVEWRIGNDTY---FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
V P P V+W + + G + + G+ SV C
Sbjct: 127 TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE---KDGSL-SVAVDLSLPKPWHLPVTCV 182
Query: 285 GNNVA 289
G N
Sbjct: 183 GKNDK 187
Score = 48.1 bits (114), Expect = 6e-07
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 215 LTVIEGEKLRLECL---VVGSPPPTVEW-RIGNDTYFRSQGRIKL----SEHPEKGTA-- 264
+T GE++ L V P V W ++G GR+ E P +G
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 265 -----NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
L + A ++ GNY C T ++ + + V
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK--QEHLSVVKP 104
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 79.2 bits (194), Expect = 2e-17
Identities = 28/216 (12%), Positives = 46/216 (21%), Gaps = 52/216 (24%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------------------- 166
L C+ I W KG G +
Sbjct: 21 ELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG 80
Query: 167 ----------SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA------- 209
++ + D G+Y C++ L + +
Sbjct: 81 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV 140
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--------NDTYFRSQGRIKLSEHPEK 261
E + V EG + + C V W G TY + +
Sbjct: 141 STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200
Query: 262 G--------TANSVLQIDEATMADRGNYYCHGNNVA 289
+ L I A + D G +C
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236
Score = 47.2 bits (111), Expect = 2e-06
Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 30/125 (24%)
Query: 213 ETLTVIEGEKLRLECLVV---GSPPPTVEWR-------------------------IGND 244
+ V G + L C + PP + W + +D
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNVATRNSQPNEAFVYVR 303
+Y S G A + L++ D G Y+C + V ++
Sbjct: 70 SYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 304 VKGKS 308
V G +
Sbjct: 129 VTGHT 133
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 76.1 bits (187), Expect = 9e-17
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 31/179 (17%)
Query: 124 PFTLKCNV--TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---------SITIRK 172
TL+C + PP ++ W + + + A ++ +D + I
Sbjct: 19 TGTLRCQLQVQGEPP----EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVG 231
+ D GQY C + T + + P + E TV L C G
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVS--QPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQG 132
Query: 232 SPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
P P + W Q + L+ P G L + ++ C +N
Sbjct: 133 PPEPVDLLWL---------QDAVPLATAPGHGP-QRSLHVPGLN--KTSSFSCEAHNAK 179
Score = 60.7 bits (147), Expect = 3e-11
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 213 ETLTVIEGEKLRLECLV-VGSPPPTVEWR-----IGNDTYFRSQGRIKLSEHPEKGTANS 266
+T G L C + V PP V W + ++Q + + + S
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG-EDEQDDWIVVS 68
Query: 267 VLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
L+I ++D G Y C T SQP +V +
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQP--GYVGLEGL 106
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 77.5 bits (190), Expect = 2e-16
Identities = 38/303 (12%), Positives = 73/303 (24%), Gaps = 65/303 (21%)
Query: 30 DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQS----------SVDSGFAATA 73
G + + C QV WQ + Q+ SV + +
Sbjct: 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERV 82
Query: 74 NLTED---NFKYSIHEAILE-----------------SGYVQSSLFIPRMNAITGNYDIE 113
+ + LE + ++ N I G +
Sbjct: 83 EFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVL 142
Query: 114 PKYKVFEYRVPFTLKCNVT--SPPPGDDYQIVWYKGNKSITEATEL--SGRLTQSKDSIT 169
K + + C PP + W K E E+
Sbjct: 143 RAKKGQDDK-VLVATCTSANGKPPS----VVSWETRLKGEAEYQEIRNPNGTVTVISRYR 197
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLV--ETLTVIEGEKLRL 225
+ + +C + + +V +P + + ++ ++L
Sbjct: 198 LVPSREAHQQSLACIV-----NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252
Query: 226 ECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
C +PP T W N + L + E ++ + G Y C
Sbjct: 253 TCKADANPPATEYHWTTLNGS---------LPKGVE-AQNRTLFFKGPINYSLAGTYICE 302
Query: 285 GNN 287
N
Sbjct: 303 ATN 305
Score = 77.5 bits (190), Expect = 3e-16
Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 31/204 (15%)
Query: 126 TLKCNVTSPPPGDD-YQIVWYKGNKSITEA-------------TELSGRLTQSKD----- 166
L C+ +P P Q+ W K + R+ +
Sbjct: 33 VLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG 92
Query: 167 SITIRKTTVDDAGQYSCRLI----DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK 222
+I + + ++D G Y C + + A ++ T ++ + +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 223 LRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
L C G PP V W Q ++ T S ++ + A + +
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQ---EIRNPNGTVTVISRYRLVPSREAHQQSL 209
Query: 282 YCHGNNVATRNSQPNEAFVYVRVK 305
C N R + + + V+
Sbjct: 210 ACIVNYHMDRFKES----LTLNVQ 229
Score = 48.2 bits (114), Expect = 1e-06
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEW-------RIGNDTYFRSQGRIKLSEHPEK 261
+++ G + L C P V W + Y S G L+ + E+
Sbjct: 22 DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRER 81
Query: 262 ------GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ +++ + D G Y C AT + E+ + + V
Sbjct: 82 VEFLRPSFTDGTIRLSRLELEDEGVYICE---FATFPTGNRESQLNLTV 127
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 76.4 bits (187), Expect = 3e-16
Identities = 25/206 (12%), Positives = 58/206 (28%), Gaps = 51/206 (24%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------------------ELSGRLTQSK 165
+ C V ++ W + L G +
Sbjct: 24 LMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND 83
Query: 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
S+ ++ D G Y+C + + N + + + ++ + P L V G+ ++
Sbjct: 84 GSLLLQDVQKADEGIYTCEI---RLKNESMVMKKPVELWVLPEEP--RDLRVRVGDTTQM 138
Query: 226 ECLVVGSPPP---TVEWR---------------------IGNDTYFRSQGRIKLSEHPEK 261
C + + V W + R + R+ L+ +
Sbjct: 139 RCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISR 198
Query: 262 GTANSVLQIDEATMADRGNYYCHGNN 287
+ +++ +D+G Y C
Sbjct: 199 N--DGSIKLQTVKESDQGIYTCSIYV 222
Score = 49.5 bits (117), Expect = 5e-07
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 24/111 (21%)
Query: 214 TLTVIEGEKLRLECLV---VGSPPPTVEWRIGNDTYF-----------------RSQGRI 253
L V GE + + C+V V+W D R Q R
Sbjct: 14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRS 73
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
L + L + + AD G Y C + V + V
Sbjct: 74 HLVGDTFHN--DGSLLLQDVQKADEGIYTCEIRLKNESMVM--KKPVELWV 120
Score = 47.2 bits (111), Expect = 3e-06
Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 56/235 (23%)
Query: 30 DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI 84
+ G + + C++ E +V W + + S + + ++ F+
Sbjct: 14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRS 73
Query: 85 HEAILESGYVQSSLFIPRMNAI-TGNY----------------------DIEPKYKVFEY 121
H ++ + SL + + G Y EP+
Sbjct: 74 HLV-GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132
Query: 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA------------------------TEL 157
++C++ S ++ W + S TE +L
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 158 SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV 212
+G ++++ SI ++ D G Y+C + K + V+ + +
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR---KTIVLHVVQDEFQRTI 244
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 73.2 bits (179), Expect = 2e-15
Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 30/202 (14%)
Query: 126 TLKCNVTSPPPGDDY--QIVWYK-------------GNKSITEATELSGRLTQSKD---- 166
TL C + P + Q+ W + S +E+ L +
Sbjct: 18 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRD 77
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLR 224
S+ + V+D G Y+C + + + V+ KP V+ + +
Sbjct: 78 ASLRMFGLRVEDEGSYTCLFVTFPQGSRS--VDIWLRVLAKPQNTAEVQKVQLTGEPVPM 135
Query: 225 LECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYY 282
C+ G PP + W ++ ++ T S+ + ++ D
Sbjct: 136 ARCVSTGGRPPAQITWHSDLGGMPQTS---QVPGFLSGTVTVTSLWILVPSSQVDGKQVT 192
Query: 283 CHGNNVATRNSQPNEAFVYVRV 304
C + + +P V + V
Sbjct: 193 CKVEHESF--EKPQLLTVSLTV 212
Score = 42.4 bits (99), Expect = 7e-05
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 25/115 (21%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT-----VEWRIGND-----TYFRSQGR---------- 252
+ G+ + L C + + W + + ++QG
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 66
Query: 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
+ E A+ L++ + D G+Y C T +++RV K
Sbjct: 67 VAARLGAELRDAS--LRMFGLRVEDEGSYTCL---FVTFPQGSRSVDIWLRVLAK 116
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 72.8 bits (178), Expect = 2e-15
Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 24/193 (12%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE--ATELSGRLTQSKD-------SITIRKTTVD 176
+L+C+ ++ + + E + S R T ++ I V
Sbjct: 21 SLECDFDRREC---TELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236
D+GQY C +I + + V L V +++L C G P
Sbjct: 78 DSGQYRCLVICGAAWDY---KYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAE 134
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296
V W+ S V + N+ C N +
Sbjct: 135 VSWQ-------NVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAH--MKELT 185
Query: 297 EAFVYVRVKGKSF 309
A + + +
Sbjct: 186 SAIIDPLSRMEPK 198
Score = 50.0 bits (119), Expect = 1e-07
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-----GRIKL-SEHPEKGTANS 266
E TV G + LEC +E + + R L E G +
Sbjct: 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG--KA 67
Query: 267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ I + D G Y C + + + ++ V+V
Sbjct: 68 LFHIPSVQVRDSGQYRC----LVICGAAWDYKYLTVKV 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 74.4 bits (182), Expect = 4e-15
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 18/171 (10%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L+C V Q W + SG L ++ T+ + +
Sbjct: 175 DVLLRCQVEGRGLE----QAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVT 229
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLRLECLVVGSPPPTVEWRI 241
C + N + +A+ V + + T +E + V G P P++ W
Sbjct: 230 CW-----AEN--DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF 282
Query: 242 GNDTYFRSQGRIK---LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
N + I L + + L++++ T + GNY N
Sbjct: 283 -NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Score = 54.4 bits (130), Expect = 1e-08
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+V G+ + L C V G W + + G + L +
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTE-------LEQSATVMKSGGLPSLGLTLAN 218
Query: 273 ATM-ADRGNYYCHGNNVA 289
T +R N C N
Sbjct: 219 VTSDLNRKNVTCWAENDV 236
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 75.0 bits (183), Expect = 4e-15
Identities = 45/282 (15%), Positives = 81/282 (28%), Gaps = 39/282 (13%)
Query: 35 EGAPINISCILTIFEQVKWQLNGR-NINQSSVDSGFAAT-ANLT-EDNFKYSIHEAILES 91
+GA +++ V + GR N+ + F A L+ +D+ +Y I
Sbjct: 40 QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99
Query: 92 GYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-- 149
G + + + K + T+ C + + YK
Sbjct: 100 GLSFD---VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA--QKRKSLYKQIGLY 154
Query: 150 -------SITEATELSGRLTQSKD-------SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
S +GR+ S+ I + + DAGQY C+ + +
Sbjct: 155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA---GDDSNSN 211
Query: 196 LAQADFDVIMKP----------TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
AD V+ + L + C V
Sbjct: 212 KKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKR 271
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+GRI L+ + G+ + I D G Y C ++
Sbjct: 272 APAFEGRILLNPQDKDGS--FSVVITGLRKEDAGRYLCGAHS 311
Score = 72.7 bits (177), Expect = 2e-14
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 32/200 (16%)
Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------SITIRKT 173
E C +S D +V K A GR+ + S+ I
Sbjct: 244 EVANVAKFLCRQSSGENCD---VVVNTLGK---RAPAFEGRILLNPQDKDGSFSVVITGL 297
Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--ETLTVIEGEKLRLECLVVG 231
+DAG+Y C QA + + + + + G + + C
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNR 357
Query: 232 SPPPTVEW----------------RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
++++ + +GR+ L E P GT + +++ T
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT--FTVILNQLTS 415
Query: 276 ADRGNYYCHGNNVATRNSQP 295
D G Y+C N +
Sbjct: 416 RDAGFYWCLTNGDTLWRTTV 435
Score = 65.0 bits (157), Expect = 7e-12
Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 34/217 (15%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSIT----------EATELSGRLTQSKD------S 167
++ C + W + +++ +GR +
Sbjct: 17 SVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV 76
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLE 226
+ I + + DD+G+Y C L + +V P + TV G + +
Sbjct: 77 VNIAQLSQDDSGRYKCGL---GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTIN 133
Query: 227 CLVVGSPPPTVEWR-------------IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
C + GRI+L G + I++
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT-GQLLFSVVINQL 192
Query: 274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310
++D G Y C + + N + + V +
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229
Score = 58.1 bits (139), Expect = 1e-09
Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSI------------TEATELSGRLT------QSK 165
+ C W + + GRL+
Sbjct: 348 SVAVLCPYNRKES--KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT 405
Query: 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
++ + + T DAG Y C TT + +P K+ +T + GE L++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNGDTLWRTT---VEIKIIEGEPNLKVPGNVTAVLGETLKV 462
Query: 226 ECLVV----GSPPPTVEW--RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
C +W + +G K + ++ + L ++ T AD G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522
Query: 280 NYYCHGNNVATRNSQPNEAF-VYVRVK 305
Y+C + E VYV V+
Sbjct: 523 WYWC----GVKQGHFYGETAAVYVAVE 545
Score = 44.6 bits (104), Expect = 3e-05
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 213 ETLTVIEGEKLRLECLV---VGSPPPTVEW-------------RIGNDTYFRSQGRIKLS 256
E + +EG + + C + W + GR L+
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
PE GT V+ I + + D G Y C + S
Sbjct: 68 NFPENGTF--VVNIAQLSQDDSGRYKCGLGINSRGLSF 103
Score = 41.9 bits (97), Expect = 2e-04
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 12/129 (9%)
Query: 124 PFTLKCNVTSPPPGDD-YQIVWYKGNKSITEATELS-GRLTQSKD------SITIRKTTV 175
+ C+ + Y W + + + + D S+T+ T
Sbjct: 459 TLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTR 518
Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
D G Y C + T + + A +++ + + E V+ S
Sbjct: 519 ADEGWYWCGVKQGHFYGETAAVYV---AVEERKAAGSRDVSLAKADAAPDEK-VLDSGFR 574
Query: 236 TVEWRIGND 244
+E + D
Sbjct: 575 EIENKAIQD 583
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 70.8 bits (173), Expect = 9e-15
Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 22/186 (11%)
Query: 126 TLKCNV-TSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKD---SITIRKT 173
TL C S +I W K K + E R SI I
Sbjct: 13 TLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILAL 72
Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQA--DFDVIMKPTAKLVETLTVIEGEKLRLECLVVG 231
D G Y C ++ + A V + + R+ C G
Sbjct: 73 RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSG 132
Query: 232 -SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNV 288
P P + W + + +S+ PE +S L M ++ C
Sbjct: 133 GFPEPHLSWLENGEEL--NAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYG 187
Query: 289 ATRNSQ 294
R +Q
Sbjct: 188 HLRVNQ 193
Score = 35.0 bits (80), Expect = 0.017
Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 20/87 (22%)
Query: 212 VETLTVIEGEKLRLECLVVGSP----PPTVEWRIGND--TYFRS---------QGRIKLS 256
V +T E L C S + W+ S + R
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYC 283
+ + I +D G Y C
Sbjct: 61 ---ITNNLS--IVILALRPSDEGTYEC 82
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 71.3 bits (174), Expect = 1e-14
Identities = 22/198 (11%), Positives = 54/198 (27%), Gaps = 30/198 (15%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT-------------EATELSGRLTQSKD------ 166
L C++ + ++ W + ++ GR + +D
Sbjct: 23 DLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK 82
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
++ I T D+G+Y C D + + + + + L
Sbjct: 83 AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDL----HVDVKGYKDGGIHL 138
Query: 226 ECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
EC G P P ++W + +++ + + + + C
Sbjct: 139 ECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM---RGSSGEGVSCT 195
Query: 285 GNNVATRNSQPNEAFVYV 302
+ A + +
Sbjct: 196 IRSSLL--GLEKTASISI 211
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 73.0 bits (178), Expect = 1e-14
Identities = 37/287 (12%), Positives = 80/287 (27%), Gaps = 24/287 (8%)
Query: 30 DTEIMEGAPINISCILT----IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH 85
+ G + ++C + + ++ L + + + +N+ ED+ + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDS-QP-MC 65
Query: 86 EAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWY 145
+ G + F+ ++ P TL+C V P + +V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPE-RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLL 124
Query: 146 KGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-------LIDPKSTNTTPLAQ 198
+G K + + + T+ +SCR NT+ Q
Sbjct: 125 RGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSE 257
V+ +LV + + + C + G P + + +
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV------HLALGDQRLNPT 235
Query: 258 HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ S T D G + SQ V +
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 68.7 bits (167), Expect = 3e-13
Identities = 36/293 (12%), Positives = 75/293 (25%), Gaps = 62/293 (21%)
Query: 33 IMEGAPINISCILT-----IFEQVKWQLNGRNINQSSVDSGFAATANLT-----EDNFKY 82
+ + C L QV L + +N + + +A + ED
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 259
Query: 83 SIH-EAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPG 137
+ IL + ++ + T P + + V T+KC
Sbjct: 260 RLTCAVILGNQSQETLQTV------TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK- 312
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTPL 196
+ + + + + ++ T D+ +SC ++
Sbjct: 313 ----VTLNG----------VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358
Query: 197 AQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253
+ V+ P T E + C G+P P ++
Sbjct: 359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------------ 406
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
+ + + T G Y C + ++ V V V
Sbjct: 407 ------DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTRE----VTVNVLS 449
Score = 64.5 bits (156), Expect = 1e-11
Identities = 30/204 (14%), Positives = 49/204 (24%), Gaps = 34/204 (16%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+ P + + C+ + P + L +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPM---LLGIETPLPK-------KELLLPGNNRKVYE 53
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET--LTVIEGEKLRLECLV 229
+ V + Q C P +T A+ V P + G+ L L C V
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQST---AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110
Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC--- 283
G P TV G + E A + N+ C
Sbjct: 111 EGGAPRANLTVVLLRG--------EKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 284 -----HGNNVATRNSQPNEAFVYV 302
G + S P + +V
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFV 186
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 70.4 bits (172), Expect = 2e-14
Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 31/199 (15%)
Query: 126 TLKCNVTSPPPGD--DYQIVWYKGNKSI-----------TEATELSGRLTQSKD------ 166
T++C D + W +K+I + + R KD
Sbjct: 20 TIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN 79
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLR 224
++ I + DAG Y C + + + V + +
Sbjct: 80 AALQITDVKLQDAGVYRCMISYGGADY----KRITVKVNAPYNKINQRILVVDPVTSEHE 135
Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYC 283
L C G P V W + + S+ EK S L+I+ T +YC
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN---EIFYC 192
Query: 284 HGNNVATRNSQPNEAFVYV 302
+ + + A + +
Sbjct: 193 TFRRLDP--EENHTAELVI 209
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 66.7 bits (162), Expect = 5e-14
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 201 FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRSQGRIKL 255
+DV++ P+ + + GEKL L C +++ + +K
Sbjct: 8 YDVVLSPS----HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63
Query: 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
E S L ID T +D+G Y C ++ +VRV K F
Sbjct: 64 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK----NSTFVRVHEKPF 113
Score = 40.9 bits (95), Expect = 8e-05
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 12/91 (13%)
Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--------SITIRKTTVD 176
L C + W + ++ L ++TI T
Sbjct: 26 LVLNCTARTELNVG-IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207
D G Y+C T V KP
Sbjct: 85 DQGLYTCAASSGLMTKK---NSTFVRVHEKP 112
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 70.1 bits (171), Expect = 5e-14
Identities = 35/290 (12%), Positives = 74/290 (25%), Gaps = 62/290 (21%)
Query: 35 EGAPINISCILT-----IFEQVKWQLNGRNINQSSVDSGFAATANLT-------EDNFKY 82
+ C L QV L + +N + + +A + E +
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76
Query: 83 SIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPGD 138
+ IL + ++ +T P + + V T+KC
Sbjct: 77 TC-AVILGNQSQETLQ------TVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA--- 126
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTPLA 197
++ + + + ++ T D+ +SC ++
Sbjct: 127 --KVTLNGV----------PAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 198 QADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
+ V+ P T E + C G+P P ++
Sbjct: 175 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------------- 221
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ + + T G Y C + ++ E V V
Sbjct: 222 -----DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTR--EVTVNVLS 264
Score = 28.9 bits (64), Expect = 2.0
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 13/93 (13%)
Query: 216 TVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ + + C + G P V +G+ ++ + +A + + +
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL-----NPTVTYGNDSFSAKASVSV-T 67
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
A C +Q E V +
Sbjct: 68 AEDEGTQRLTC----AVILGNQSQETLQTVTIY 96
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 68.5 bits (167), Expect = 5e-14
Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 33/186 (17%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------------ELSGRLTQSKD-SITI 170
TL P I W S+ + RL ++ S+ +
Sbjct: 17 TLPLEF--PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV 230
++D G Y ++ S + + L +L L C V
Sbjct: 75 SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVE 134
Query: 231 -GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ W +T SQ + +S P +Y C N
Sbjct: 135 DADDNVSFRWEALGNT-LSSQPNLTVSWDPRIS--------------SEQDYTCIAENAV 179
Query: 290 TRNSQP 295
+ S
Sbjct: 180 SNLSFS 185
Score = 37.3 bits (86), Expect = 0.003
Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 45/192 (23%)
Query: 34 MEGAPINISCILTIFEQVK---WQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILE 90
+ G + + E+V W N ++ + + + + N K +
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSL--AFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 91 SGYVQSSLFIP----------RMNAITGNYDIEPKYKVFEYRVPFTLK------------ 128
S SL + R T Y + R ++
Sbjct: 69 SY----SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMT 124
Query: 129 CNVT----SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
C + D+ W +++ LT S D + Y+C
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSS----QPNLTVSWD------PRISSEQDYTCI 174
Query: 185 LIDPKSTNTTPL 196
+ S + +
Sbjct: 175 AENAVSNLSFSV 186
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 68.6 bits (167), Expect = 7e-14
Identities = 27/206 (13%), Positives = 64/206 (31%), Gaps = 24/206 (11%)
Query: 111 DIEPKYKVF-EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI 168
+ P+ + + +L C+ T P W S + + ++
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESP----FFSWRTQIDSPLNGKVTNEG---TTSTL 56
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRL 225
T+ + + Y C +T + + V + K E + G+ + +
Sbjct: 57 TMNPVSFGNEHSYLCT-----ATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111
Query: 226 ECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
+C V P ++ D +SQ ++ ++ T + +
Sbjct: 112 KCSVADVYPFDRLEIDLL-KGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV 170
Query: 283 CH-GNNVATRNSQP--NEAFVYVRVK 305
C ++ +S P +A ++V
Sbjct: 171 CRAKLHIDEMDSVPTVRQAVKELQVY 196
Score = 61.3 bits (148), Expect = 2e-11
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
G+ + L C G P WR D+ L+ S L ++
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS--------PLNGKVTNEGTTSTLTMNP 60
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
+ + +Y C S+ E + V +
Sbjct: 61 VSFGNEHSYLCTATC----ESRKLEKGIQVEIYSFPK 93
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 65.8 bits (161), Expect = 8e-14
Identities = 22/95 (23%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E V GE + L V G+ P T W + +K+ S L I
Sbjct: 15 EDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSEN----GSKLTILA 69
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
A G Y N A V + V K
Sbjct: 70 ARQEHCGCYTLLVENKLGSRQ----AQVNLTVVDK 100
Score = 51.6 bits (124), Expect = 1e-08
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L VT + P W K K I E+ + +++ +TI + G Y+
Sbjct: 24 SVELFGKVTGTQPI----TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTA 209
+ + + AQ + V+ KP
Sbjct: 80 LLVENKLGSRQ---AQVNLTVVDKPDP 103
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 69.5 bits (169), Expect = 1e-13
Identities = 45/298 (15%), Positives = 89/298 (29%), Gaps = 43/298 (14%)
Query: 30 DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS 83
+ G ++ + W + + ++ + +E+ Y
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--ATLTVADATSENAGSYK 68
Query: 84 IHEAILESGYVQSSLFIPRMNAITGNYDI-EPKYKVFEYRVPFTLKCNV-----TSPPPG 137
+ + M +I EP++ + L V +P
Sbjct: 69 V-TVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADN 127
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
+ W KG I ++ TI++ T D G Y+ ++ + +
Sbjct: 128 YELHYSWSKGEDVIDTTQDI-----------TIQEFTADKNGVYTVKVWGESEDSAASAS 176
Query: 198 QADFDVIMKPTAKLVETLTVIEGEKLRLECLV--------VGSPPPTVEW-----RIGND 244
M +VE+ TV G ++ L +V G P T+++ R G
Sbjct: 177 TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
+ + + T + L + AT D ++C VA Q + V V
Sbjct: 237 SPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWC----VAKLYQQIEDETVEV 290
Score = 35.6 bits (81), Expect = 0.016
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 19/81 (23%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
+ G+ L V G P T W + + + L
Sbjct: 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH---------------ENNTATL 54
Query: 269 QIDEATMADRGNYYCHGNNVA 289
+ +AT + G+Y +
Sbjct: 55 TVADATSENAGSYKVTVQDTD 75
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.6 bits (160), Expect = 1e-13
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
TV L C+ GSP PT+ WR RIK E N VLQI
Sbjct: 16 VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-------NGVLQIRY 68
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
A + D G Y C + + + A++ V+ G
Sbjct: 69 AKLGDTGRYTCIASTPSGEATW--SAYIEVQEFGV 101
Score = 45.9 bits (109), Expect = 1e-06
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
F L C T SP P I+W K ++ R+ Q ++ + IR + D G+Y
Sbjct: 25 TFVLSCVATGSPVP----TILWRKDGVLVSTQ---DSRIKQLENGVLQIRYAKLGDTGRY 77
Query: 182 SCR 184
+C
Sbjct: 78 TCI 80
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 66.8 bits (163), Expect = 2e-13
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 12/165 (7%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
P TL+C +Y+ Y+ K+ T + + K I T + G+Y C
Sbjct: 21 PVTLRCQ--GGQETQEYR--LYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRC 75
Query: 184 RLIDP---KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
+S ++ PL +KPT + V G + L+C + + +
Sbjct: 76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCK 135
Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
G D + + S+ +G++ ++ + + + R Y C+
Sbjct: 136 EGEDEHPQCLN----SQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176
Score = 35.2 bits (81), Expect = 0.014
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
+ +G + L C T E+R+ + ++ P++ I
Sbjct: 16 ITQGSPVTLRC---QGGQETQEYRLYREKKTAPWITRI-------PQELVKKGQFPIPSI 65
Query: 274 TMADRGNYYCHGNNVATRNSQP 295
T G Y C+ + S+
Sbjct: 66 TWEHTGRYRCYYGSDTAGRSES 87
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 66.8 bits (163), Expect = 3e-13
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
++C + Q++ K + L ++ I + AG+Y C+
Sbjct: 27 KIQCQ--AIREAYLTQLMIIKNSTYREIGRRLK-FWNETDPEFVIDHMDANKAGRYQCQY 83
Query: 186 IDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIG 242
+ + L + KP L ++ GE + L C P + G
Sbjct: 84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEG 143
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
+ + Q G + + + G Y C+G
Sbjct: 144 ELSLPQHQS----------GEHPANFSLGPVDLNVSGIYRCYG 176
Score = 33.3 bits (76), Expect = 0.067
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
+ ++++C + T I N TY R+K + ID
Sbjct: 20 IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFW-----NETDPEFVIDHMDAN 74
Query: 277 DRGNYYCHGNNVATRNSQPNEA 298
G Y C + ++
Sbjct: 75 KAGRYQCQYRI-GHYRFRYSDT 95
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 65.3 bits (159), Expect = 4e-13
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 172 KTTVDDAGQYSCRLIDP---KSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLEC 227
+ +G I+ ++ + A+ +KP K + + V+EG R +C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH---PEKGTANSVLQIDEATMADRGNYYCH 284
V G P P V W F+ +K S H N L I E D Y C
Sbjct: 64 KVEGYPDPEVMW-------FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 285 GNNVA 289
N
Sbjct: 117 AVNSL 121
Score = 45.2 bits (107), Expect = 3e-06
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
C V P P +++W+K + + E S D S+TI + DD
Sbjct: 58 AARFDCKVEGYPDP----EVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 178 AGQYSCR 184
+Y+C+
Sbjct: 110 DAKYTCK 116
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 66.0 bits (161), Expect = 4e-13
Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 12/162 (7%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T+ C +Y+ K + ++K +I T D AG+Y C
Sbjct: 23 TIWCQ--GTLEAREYR--LDKEESPAPWDRQNP-LEPKNKARFSIPSMTEDYAGRYRCYY 77
Query: 186 IDPKSTNTT--PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
P + PL KPT + + V G+ + L C S P + +
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLC---QSRSPMDTFLLCK 134
Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
+ ++ ++ A + T G Y C
Sbjct: 135 ERAAHPLLCLRSEHGAQQHQAE--FPMSPVTSVHGGTYRCFS 174
Score = 28.3 bits (63), Expect = 2.6
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 217 VIEGEKLRLECLVVGSPPPTVE---WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
+ G + + C E + + + Q ++ I
Sbjct: 16 ISWGNSVTIWC---QGTLEAREYRLDKEESPAPWDRQNPLEPKNKAR-------FSIPSM 65
Query: 274 TMADRGNYYCHGNNVATRNSQP 295
T G Y C+ + SQP
Sbjct: 66 TEDYAGRYRCYYRS-PVGWSQP 86
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 63.2 bits (154), Expect = 5e-13
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
T+ L+C G P P + W T+ R + E LQI
Sbjct: 16 ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-------QGTLQIKN 68
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
++D G Y C + + S A + V G
Sbjct: 69 LRISDTGTYTCVATSSSGETSW--SAVLDVTESG 100
Score = 46.2 bits (110), Expect = 6e-07
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
LKC T P P I W K + R T + ++ I+ + D G Y+C
Sbjct: 27 LLKCKATGDPLP----VISWLKEGFTFPGR---DPRATIQEQGTLQIKNLRISDTGTYTC 79
Query: 184 R 184
Sbjct: 80 V 80
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 62.8 bits (153), Expect = 7e-13
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E+ V G+ L+L C + ++ W + R +++ +++ +
Sbjct: 11 ESFLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQLAESNRTRIT--------GEEVEVQD 60
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ AD G Y C V + S + + V V
Sbjct: 61 SVPADSGLYAC----VTSSPSGSDTTYFSVNVS 89
Score = 54.7 bits (132), Expect = 6e-10
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
+G+ +E + + L+C + I W + + E S R + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ----SINWLRDGVQLAE----SNRTRITGE 54
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
+ ++ + D+G Y+C +++ + F V +
Sbjct: 55 EVEVQDSVPADSGLYACV-----TSSPSGSDTTYFSVNVSDA 91
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 62.7 bits (153), Expect = 7e-13
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ + G LE +G+P PT W + D+ + + + +
Sbjct: 10 RKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSS----TTSIFFPS 64
Query: 273 ATMADRGNYYCHGNNVA 289
A AD GNY N
Sbjct: 65 AKRADSGNYKLKVKNEL 81
Score = 54.3 bits (131), Expect = 7e-10
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L+ + +P P W G+ A EL S SI D+G Y
Sbjct: 19 THNLEVDFIGAPDP----TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 183 CRLIDPKSTNTTPLAQADFDVIMK 206
++ N +A F+VI++
Sbjct: 75 LKV-----KNELGEDEAIFEVIVQ 93
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 64.9 bits (158), Expect = 7e-13
Identities = 28/194 (14%), Positives = 50/194 (25%), Gaps = 37/194 (19%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------ELSGRLTQSKD-SITIRKTT 174
L D I W K + A + K+ ++ I+
Sbjct: 16 DINLDIPSF-QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDV-IMKPTAKLVETLTVIEGEKLRLECLVVGSP 233
DD Y + D K N + FD+ I + +K + L C V+
Sbjct: 75 TDDQDIYKVSIYDTKGKNV---LEKIFDLKIQERVSKPKIS---WTCINTTLTCEVMNGT 128
Query: 234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
P + + + + T + + C N ++ S
Sbjct: 129 DPELNLYQDGKHL----------------KLSQRVITHKWTTSLSAKFKCTAGNKVSKES 172
Query: 294 QPNEAFVYVRVKGK 307
+ V K
Sbjct: 173 ----SVEPVSCPEK 182
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 63.2 bits (154), Expect = 7e-13
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
V+EG+ ++LEC + PPP + W+ N+ + RI L + T L I +
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY---QDNTGRVTLLIKDVN 81
Query: 275 MADRGNYYCHGNNVA 289
D G Y N A
Sbjct: 82 KKDAGWYTVSAVNEA 96
Score = 49.3 bits (118), Expect = 7e-08
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
L+C ++ PPP ++ W + N+ + + R++ +D ++ I+ D
Sbjct: 32 SVKLECQISAIPPP----KLFWKRNNEMVQFN---TDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 178 AGQYSCR 184
AG Y+
Sbjct: 85 AGWYTVS 91
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 62.8 bits (153), Expect = 9e-13
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 195 PLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253
P+ + D P + + V+ G + L+C+V+G PPP V W + R+
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWE-KGGQQLAASERL 60
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
+ L + A D G Y C N A
Sbjct: 61 SFPADGAEHG----LLLTAALPTDAGVYVCRARNAA 92
Score = 51.2 bits (123), Expect = 1e-08
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
LKC V PPP +VW KG + + + LS ++ + + DAG Y CR
Sbjct: 32 ELKCVVLGEPPP----VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 65.6 bits (159), Expect = 1e-12
Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 38/192 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNK-------------------SITEATELSGRLTQSKD 166
L C T Y + W+ ++ ++ + S
Sbjct: 19 ILDCTPTGTHDH--YMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ 76
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL-----TVIEG 220
+ + + V D Y C + + T A A +V KP A V + +
Sbjct: 77 GRLVLAEAQVGDERDYVCV-VRAGAAGTAE-ATARLNVFAKPEATEVSPNKGTLSVMEDS 134
Query: 221 EKLRLECLVV-GSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKG---TANSVLQID 271
+ C G+P P + W R+ +G + E + S L +
Sbjct: 135 AQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLR 194
Query: 272 EATMADRGNYYC 283
+++C
Sbjct: 195 LRKDDRDASFHC 206
Score = 48.3 bits (114), Expect = 9e-07
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT-VEWRIGND--------TYFRSQGRIKLSEHPEKGT 263
+ V+ G+ + L+C G+ +EW + + + ++++ H +G
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 264 A-------NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
+ L + EA + D +Y C V + EA + V K
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCV---VRAGAAGTAEATARLNVFAK 115
Score = 31.7 bits (71), Expect = 0.25
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 22/102 (21%)
Query: 98 LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT--SPPPGDDYQIVWYKGNKSITEAT 155
P ++ N + V E CN +P P +I WY+ + +
Sbjct: 113 FAKPEATEVSPN---KGTLSVMEDSAQEIATCNSRNGNPAP----KITWYRNGQRLEVPV 165
Query: 156 EL-------------SGRLTQSKDSITIRKTTVDDAGQYSCR 184
E+ + L ++ +R D + C
Sbjct: 166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCA 207
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 64.9 bits (157), Expect = 1e-12
Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 48/216 (22%)
Query: 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT 174
K ++ L C+ + I W+K K I TE + +
Sbjct: 11 KVYDYQEDGSVLLTCDAEAKN------ITWFKDGKMIGFLTEDKKKWN-------LGSNA 57
Query: 175 VDDAGQYSCR----------------LIDPKSTNTTPLAQADFDVIMKPTAKLVETL--- 215
D G Y C+ D + A D K + E +
Sbjct: 58 KDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI 117
Query: 216 ------TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
I G + L C P + W+ ND K E + +
Sbjct: 118 TQTPYKVSISGTTVILTCPQ--YPGSEILWQH-NDKNIGGDEDDKNIGSDE----DHLSL 170
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ + + G Y C+ + ++Y+R +
Sbjct: 171 KEFSELEQSGYYVCYPRGSKPED---ANFYLYLRAR 203
Score = 43.0 bits (100), Expect = 4e-05
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 30/160 (18%)
Query: 50 QVKWQLNGRNINQSSV-------------DSGF---AATANLTEDNFKY----SIHEAIL 89
+ W +G+ I + G + N ++ Y S +A
Sbjct: 31 NITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKK 90
Query: 90 ESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-----PFTLKCNVTSPPPGDDYQIVW 144
++ + + + Y+V L C +I+W
Sbjct: 91 DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGS-----EILW 145
Query: 145 YKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
+K+I + + + ++ +G Y C
Sbjct: 146 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 62.4 bits (152), Expect = 1e-12
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
++TV EGE R C G P PTV W + R +++ K T +I
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWL-RKGQVLSTSARHQVTTTKYKST----FEISS 76
Query: 273 ATMADRGNYYCHGNNVA 289
+D GNY N
Sbjct: 77 VQASDEGNYSVVVENSE 93
Score = 48.9 bits (117), Expect = 7e-08
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
C+ P P + W + + ++ + T+ K + I D G YS
Sbjct: 33 RFSCDTDGEPVP----TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 63.1 bits (153), Expect = 1e-12
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--------TA 264
+ G + L C VGSP P ++W ++ ++ A
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88
Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNS 293
S + ID D G Y C +N RN
Sbjct: 89 ASTISIDTLVEEDTGTYECRASNDPDRNH 117
Score = 41.2 bits (96), Expect = 7e-05
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL-------------SGRLTQSKDSITIR 171
L C SP P +I W+ + + + + +I+I
Sbjct: 40 ELHCEAVGSPVP----EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 172 KTTVDDAGQYSCR 184
+D G Y CR
Sbjct: 96 TLVEEDTGTYECR 108
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 61.6 bits (150), Expect = 2e-12
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+++ EG+ L + C G P P V W SQ + + + L I +
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRFHIENTDD--LTTLIIMD 69
Query: 273 ATMADRGNYYCHGNNVA 289
D G Y N
Sbjct: 70 VQKQDGGLYTLSLGNEF 86
Score = 51.9 bits (125), Expect = 6e-09
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQ 180
T+ C T P P ++ W G + I + + + D ++ I D G
Sbjct: 22 VLTVACAFTGEPTP----EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 77
Query: 181 YSCR 184
Y+
Sbjct: 78 YTLS 81
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 61.0 bits (148), Expect = 3e-12
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+ +V G + C SP T+ W ++ S+ N +L I
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF----------NGILTIR 67
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+D G Y C G+N+ + A ++V+V
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQG--TATLHVQV 98
Score = 44.8 bits (106), Expect = 2e-06
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 11/61 (18%)
Query: 126 TLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
T C S P +VW + + L R +TIR DAG Y C
Sbjct: 29 TFICTAKSKSPAY----TLVWTRLHNGK-----LPSRAMDFNGILTIRNVQPSDAGTYVC 79
Query: 184 R 184
Sbjct: 80 T 80
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 60.8 bits (148), Expect = 4e-12
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
LTV EG+ R++C V G P P + W++ + R K+ E G L I+ T
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKM-LVRENG--VHSLIIEPVT 74
Query: 275 MADRGNYYCHGNNVA 289
D G Y C N A
Sbjct: 75 SRDAGIYTCIATNRA 89
Score = 46.6 bits (111), Expect = 5e-07
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
+ C V+ P P + W K + + ++ ++ S+ I T DAG
Sbjct: 26 LCRMDCKVSGLPTP----DLSWQLDGKPVRPDSAH--KMLVRENGVHSLIIEPVTSRDAG 79
Query: 180 QYSCR 184
Y+C
Sbjct: 80 IYTCI 84
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 60.4 bits (147), Expect = 5e-12
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 21/100 (21%)
Query: 197 AQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRS 249
+ + + P ++ L + VIEG+ L+C V G+P P + W I
Sbjct: 2 SSGSSGMEVAPSFSSVLKDC-AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
G + L I +A D G Y C N
Sbjct: 61 AG-------------VAELHIQDALPEDHGTYTCLAENAL 87
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
F L+C+V +P P +I W + I A + I+ +D G Y+
Sbjct: 28 DFVLQCSVRGTPVP----RITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYT 80
Query: 183 CR 184
C
Sbjct: 81 CL 82
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 63.0 bits (153), Expect = 6e-12
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
T++C +Y+ K T+ + ++K +I T AG+Y C
Sbjct: 21 SVTIRCQ--GTLEAQEYR--LVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRC 75
Query: 184 RLIDPKSTNTT--PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
P + PL KPT + + V GE + L+C +
Sbjct: 76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEE 135
Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
G+ + S+ G ++ + T + R C+G
Sbjct: 136 GDHKLSWTLD----SQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 30.6 bits (69), Expect = 0.41
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
+ G + + C E+R+ G+ + +Q ++ I
Sbjct: 16 ISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR-------FSIPSM 65
Query: 274 TMADRGNYYCHGNNVATRNSQP 295
T G Y C+ + S+P
Sbjct: 66 TEHHAGRYRCYYYS-PAGWSEP 86
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 62.3 bits (151), Expect = 6e-12
Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 31/179 (17%)
Query: 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------ATELSGRLTQSKD-SITIRKTTV 175
+ + D ++ W +G+ + E SG + + I+ T
Sbjct: 14 INLNIPN---FQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
DD+G Y+ + T D+ + + + + E L C V+
Sbjct: 71 DDSGTYNVTVYSTNGTRIL---NKALDLRILE--MVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
++ G + + R + C N ++ S+
Sbjct: 126 ELKLYQGK--------------EHLRSLRQKTMSYQWTN--LRAPFKCKAVNRVSQESE 168
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 59.7 bits (145), Expect = 7e-12
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
+ ++ G L L+C+ VGSP P +W P + +
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE--------------LPLTHETKKLYMVPY 56
Query: 273 ATMADRGNYYCH-GNNVATRNSQP 295
+ +G Y+CH N+ +++S+
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 45.4 bits (108), Expect = 9e-07
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L+C SP P W+K +T T K + ++ G Y
Sbjct: 20 TLVLQCVAVGSPIP----HYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYW 66
Query: 183 CR 184
C
Sbjct: 67 CH 68
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 9e-12
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 202 DVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSE 257
++ P L +T GE+L L G P P V W G S+ ++ S+
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD 76
Query: 258 HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
++V + +A +D G Y +++ A + +RV K
Sbjct: 77 F------DTVFFVRQAARSDSGEYELSVQIENMKDT----ATIRIRVVEK 116
Score = 51.2 bits (123), Expect = 1e-08
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
L P P Q+VW KG + + + + R + +R+ D+G+Y
Sbjct: 41 QLNLVVPFQGKPRP----QVVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYE 95
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKP 207
+ +T A V+ K
Sbjct: 96 LSVQIENMKDT---ATIRIRVVEKA 117
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 63.7 bits (154), Expect = 1e-11
Identities = 23/168 (13%), Positives = 43/168 (25%), Gaps = 15/168 (8%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL+C V P + +V +G K + + + T+ +SC
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSC 159
Query: 184 RLIDPKSTNTTPLAQA-----DFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPT 236
R L + + P +LV + + + C + G P +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
+ + + S T D G
Sbjct: 220 EAQ-----VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Score = 54.1 bits (129), Expect = 2e-08
Identities = 31/199 (15%), Positives = 50/199 (25%), Gaps = 32/199 (16%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+ P + + C+ + P I K + +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPGN---------NRKVYE 53
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLV 229
+ V + Q C P +T A+ V P + L G+ L L C V
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQST---AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110
Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGT-ANSVLQIDEATMADRGNYYCHG 285
G P TV G L P G A + N+ C
Sbjct: 111 EGGAPRANLTVVLLRGEKE---------LKREPAVGEPAEVTTTVLVRRDHHGANFSCR- 160
Query: 286 NNVATRNSQPNEAFVYVRV 304
+ +P ++
Sbjct: 161 ---TELDLRPQGLELFENT 176
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 59.6 bits (145), Expect = 1e-11
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E +++ EG R++ V G P P V W + N +S K+ + L +
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK---GLHSLIFEV 68
Query: 273 ATMADRGNYYCHGNNVA 289
+D G Y C N A
Sbjct: 69 VRASDAGAYACVAKNRA 85
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
+ V+ P P + WY +++ ++ S+ S+ DAG
Sbjct: 22 FCRMDFKVSGLPAP----DVSWYLNGRTVQSDDLH--KMIVSEKGLHSLIFEVVRASDAG 75
Query: 180 QYSCR 184
Y+C
Sbjct: 76 AYACV 80
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 59.4 bits (144), Expect = 2e-11
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA-NSVL 268
+ + + V G+P P ++W N I H T + L
Sbjct: 6 TITFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCL 64
Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
Q+D T + G+Y N + +E + G
Sbjct: 65 QLDNPTHMNNGDYTLIAKNEYGK----DEKQISAHFMGW 99
Score = 44.3 bits (105), Expect = 3e-06
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 122 RVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTV 175
+ + V +P P + W+ + E+ + ++ + + + T
Sbjct: 16 DHHWCIPFTVKGNPKP----ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71
Query: 176 DDAGQYSCR 184
+ G Y+
Sbjct: 72 MNNGDYTLI 80
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 59.4 bits (144), Expect = 2e-11
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
++V + +E +V G+PPPT+ W N R I + + E + L
Sbjct: 10 RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGEISEGCLL 68
Query: 270 IDEATMADRGNYYCHGNNVA 289
++ T + GNY N
Sbjct: 69 FNKPTHYNNGNYTLIAKNPL 88
Score = 44.4 bits (105), Expect = 4e-06
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 120 EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEA----TELSGRLTQSKDSITIRKTT 174
E R+ ++ V +PPP + W + + E+ E S+ + K T
Sbjct: 18 ELRLEHCIEFVVRGNPPP----TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPT 73
Query: 175 VDDAGQYSCR 184
+ G Y+
Sbjct: 74 HYNNGNYTLI 83
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 61.8 bits (150), Expect = 2e-11
Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 18/187 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
T+ C +YQ + +K I AGQYSC
Sbjct: 23 QVTICCQ--GNYGAVEYQ--LHFEGSLFAVDRPKP-PERINKVKFYIPDMNSRMAGQYSC 77
Query: 184 RLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
S + L ++ PT + VI GEK+ C + + + +
Sbjct: 78 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKE 137
Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
G ++ + G + + T A RG Y C G+ S P+E V
Sbjct: 138 GRSSHVQRG----------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP-VK 186
Query: 302 VRVKGKS 308
+ V G
Sbjct: 187 LLVTGDI 193
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 61.4 bits (149), Expect = 2e-11
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
Y+ S+ P + P + + EG ++ + C V P T+
Sbjct: 1 ATYAA-----ASSALVPRG----SHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATIS 51
Query: 239 WRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
W G + IK+ + S L++ + D GNY C N
Sbjct: 52 WFRDGQLLPSSNYSNIKI----YNTPSASYLEVTPDSENDFGNYNCTAVN 97
Score = 43.7 bits (103), Expect = 3e-05
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS--ITIRKTTVDDAGQ 180
+ C V P I W++ + + + + ++ + + + + + +D G
Sbjct: 35 QVNITCEVFAYPSA----TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 181 YSCRL 185
Y+C
Sbjct: 91 YNCTA 95
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 58.9 bits (143), Expect = 2e-11
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E T GE + + C G+PPP + W F+ + N L I
Sbjct: 18 ENQTTSIGESIEVSCTASGNPPPQIMW-------FKDNETLVEDSGIVLKDGNRNLTIRR 70
Query: 273 ATMADRGNYYCHGNNVA 289
D G Y C +V
Sbjct: 71 VRKEDEGLYTCQACSVL 87
Score = 49.6 bits (119), Expect = 5e-08
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGR--LTQSKDSITIRKTTVDDAGQ 180
+ C + +PPP QI+W+K N+++ E L ++TIR+ +D G
Sbjct: 27 SIEVSCTASGNPPP----QIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEGL 78
Query: 181 YSCR 184
Y+C+
Sbjct: 79 YTCQ 82
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 61.4 bits (148), Expect = 3e-11
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 42/208 (20%)
Query: 126 TLKCNVTSPPPG----DDYQIVWYKGNKSITEA-------------------TELSGRLT 162
+ C+ + P + W++ + A L G +
Sbjct: 19 LVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQ 78
Query: 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTN-TTPLAQADFDVIMKPTAKLVETL-TVIEG 220
+ S++I ++D G Y R+ + + + + +V + L + G
Sbjct: 79 KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138
Query: 221 EKLRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
RL C + PP T W LS + T +S L +
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNA-----------LSPLDPETTRSSELTLTPRPED 187
Query: 277 DRGNYYCHGNNVATRNSQPNEAFVYVRV 304
N C + + E V + V
Sbjct: 188 HGTNLTCQMKRQGAQVTT--ERTVQLNV 213
Score = 42.9 bits (100), Expect = 5e-05
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 25/118 (21%)
Query: 213 ETLTVIEGEKLRLECLV-------VGSPPPTVEW-RIGNDTYF---------------RS 249
+++TV EG + + C SPP V W R G Y+ +
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
QGR +L +K + L I +A M D G+Y+ + + + V
Sbjct: 68 QGRFRLLGDVQKKNCS--LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL 123
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 59.8 bits (144), Expect = 3e-11
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 32/115 (27%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR---------------------- 240
+ + ++ +T+ V+ G KLRL+ + G P PTV W+
Sbjct: 16 IHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTG 75
Query: 241 ------IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
++GR+++ + S+ ++ A D G Y N
Sbjct: 76 DSDEWVFDKKLLCETEGRVRVETTKD----RSIFTVEGAEKEDEGVYTVTVKNPV 126
Score = 36.7 bits (84), Expect = 0.003
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 34/92 (36%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEA-------------------------TEL 157
L ++ P P ++W K +A E
Sbjct: 35 KLRLDVPISGDPAP----TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 90
Query: 158 SGR--LTQSKD--SITIRKTTVDDAGQYSCRL 185
GR + +KD T+ +D G Y+ +
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTV 122
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 59.1 bits (143), Expect = 3e-11
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 197 AQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRI-GNDTYFRSQGRIK 254
+ V P +T + GEK +++C + +PPP + W N + GR
Sbjct: 5 SSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 64
Query: 255 LSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
+ + S L I AD Y C N ++ + ++ +G
Sbjct: 65 VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDT----EIIRLKEQGSE 115
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 58.6 bits (142), Expect = 3e-11
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
V+ + G L C V V W + S ++++
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSC-EVAQAQTEVTWY-KDGKKLSSSSKVRVEAVGCTR 66
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310
L + +A A+ G Y C ++V G+ FG
Sbjct: 67 R----LVVQQAGQAEAGEYSCEAGGQQLS--------FRLQVAGQCFG 102
Score = 54.3 bits (131), Expect = 9e-10
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
TL C V ++ WYK K ++ S ++ + +++ +AG
Sbjct: 28 SATLSCEVAQAQT----EVTWYKDGKKLSS----SSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 180 QYSCR 184
+YSC
Sbjct: 80 EYSCE 84
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 58.3 bits (141), Expect = 3e-11
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E+L V G+ L+L C + ++ W + R +++ +++ +
Sbjct: 17 ESLLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQLVESNRTRIT--------GEEVEVRD 66
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ AD G Y C ++ + ++ + V V
Sbjct: 67 SIPADSGLYACVTSSPSGSDT----TYFSVNV 94
Score = 54.0 bits (130), Expect = 1e-09
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+E + + L+C + I W + + E S R + + + +R
Sbjct: 14 VEVESLLVHPGDLLQLRCRLRDDVQ----SINWLRDGVQLVE----SNRTRITGEEVEVR 65
Query: 172 KTTVDDAGQYSCR 184
+ D+G Y+C
Sbjct: 66 DSIPADSGLYACV 78
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 58.4 bits (142), Expect = 3e-11
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+V EG+ + + V G P P V W Q R E G L+I A
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA--EGGLCR--LRILAAE 70
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
D G Y C N + V+G+
Sbjct: 71 RGDAGFYTCKAVNEYGARQ----CEARLEVRGE 99
Score = 47.3 bits (113), Expect = 3e-07
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
+ V P P + W + + + R + + + I DA
Sbjct: 22 DVIMSIRVQGEPKP----VVSWLRNRQPVRPD---QRRFAEEAEGGLCRLRILAAERGDA 74
Query: 179 GQYSCR 184
G Y+C+
Sbjct: 75 GFYTCK 80
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 58.5 bits (142), Expect = 3e-11
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+ EG + C V G+P P + W + + GT L +T
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD-GTC--SLHTTAST 74
Query: 275 MADRGNYYCHGNNVA 289
+ D GNY N
Sbjct: 75 LDDDGNYTIMAANPQ 89
Score = 49.3 bits (118), Expect = 5e-08
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
P T C V +P P +I W+K K I+ S T +D S+ +T+DD
Sbjct: 25 PVTFTCRVAGNPKP----KIYWFKDGKQISPK---SDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 178 AGQYSCR 184
G Y+
Sbjct: 78 DGNYTIM 84
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 57.3 bits (139), Expect = 7e-11
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
TV + G P PT W + G+ KLSE L+I +
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWT-KDGKAITQGGKYKLSEDKGGFF----LEIHKTD 70
Query: 275 MADRGNYYCHGNNVA 289
+D G Y C N A
Sbjct: 71 TSDSGLYTCTVKNSA 85
Score = 47.3 bits (113), Expect = 2e-07
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
T P P +W K K+IT+ G+ S+D + I KT D+
Sbjct: 23 VAKFAVKATGEPRP----TAIWTKDGKAITQ----GGKYKLSEDKGGFFLEIHKTDTSDS 74
Query: 179 GQYSCR 184
G Y+C
Sbjct: 75 GLYTCT 80
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 57.1 bits (138), Expect = 9e-11
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
V ++ C G+P PT+ W N F+ + RI + + + L ++
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLIMES 71
Query: 273 ATMADRGNYYC 283
+D+GNY C
Sbjct: 72 VVPSDKGNYTC 82
Score = 45.9 bits (109), Expect = 8e-07
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQY 181
+C +P P + W K K + + G ++ S+ + D G Y
Sbjct: 25 TVKFRCPAGGNPMP----TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 80
Query: 182 SCR 184
+C
Sbjct: 81 TCV 83
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 56.7 bits (137), Expect = 1e-10
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E V G + L C V P P + W + + L + VL + E
Sbjct: 18 EGGAVAPGGTVTLTCEVPAQPSPQIHW-------MKDGVPLPLPP-------SPVLILPE 63
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
D+G Y C + + + + +
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL C V P P QI W K + + + + D G YSC
Sbjct: 29 TLTCEVPAQPSP----QIHWMKDGVPLPL---------PPSPVLILPEIGPQDQGTYSC 74
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 58.4 bits (141), Expect = 2e-10
Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 42/186 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN-----------KSITEATELSGRLTQSKD--SITIRK 172
TL P ++ W K + R+ K ++ I
Sbjct: 18 TLTILKH--PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYN 75
Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV-IMKPTAKLVETLTVIEGEKLRLECLVVG 231
+ +D G Y R++ + + + +K + E L C V+
Sbjct: 76 VSKEDRGDYYMRMLHETEDQWK------ITMEVYEMVSKPMIY---WECSNATLTCEVLE 126
Query: 232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN-VAT 290
++ G + RS + +S R + C N V+
Sbjct: 127 GTDVELKLYQGK-EHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQ 170
Query: 291 RNSQPN 296
+
Sbjct: 171 ESEMEV 176
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 58.0 bits (140), Expect = 2e-10
Identities = 24/181 (13%), Positives = 47/181 (25%), Gaps = 39/181 (21%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKD--SITIRKT 173
T P +++W K + E + R+ S+TI
Sbjct: 12 NVTFHVPSNVPLK----EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67
Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSP 233
T D +Y + T L V+ + ++ E L C V+
Sbjct: 68 TSSDEDEYEMESPNITDTMKFFL-----YVLEMVSKPMI----YWECSNATLTCEVLEGT 118
Query: 234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
++ G + + + R + C N ++ S
Sbjct: 119 DVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 162
Query: 294 Q 294
+
Sbjct: 163 E 163
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 55.5 bits (134), Expect = 3e-10
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 199 ADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
+ D KL V +G K+RL + V+W S +
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTV-ELADHDAEVKWLKNGQEIQMSGSKYIFE 66
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
K T L I + ++AD Y C ++V+
Sbjct: 67 SIGAKRT----LTISQCSLADDAAYQCVVGGEKC------STELFVK 103
Score = 54.3 bits (131), Expect = 9e-10
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----S 167
+EP Y+V + L + ++ W K + I + + +
Sbjct: 22 LEPAYQVSK-GHKIRLTVELADHDA----EVKWLKNGQEIQMS---GSKYIFESIGAKRT 73
Query: 168 ITIRKTTVDDAGQYSCRLIDPKST 191
+TI + ++ D Y C + K +
Sbjct: 74 LTISQCSLADDAAYQCVVGGEKCS 97
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 55.4 bits (134), Expect = 3e-10
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP---EKGTANSVLQID 271
TV +G VVG P P EW +++ +I+ S+ L I
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEW-------YKNGVKIERSDRIYWYWPEDNVCELVIR 67
Query: 272 EATMADRGNYYCHGNNVA 289
+ T D + N+A
Sbjct: 68 DVTGEDSASIMVKAINIA 85
Score = 50.0 bits (120), Expect = 3e-08
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 14/67 (20%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
+ V P P + WYK I S R+ + IR T +D
Sbjct: 22 DAHFRVRVVGKPDP----ECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGED 73
Query: 178 AGQYSCR 184
+ +
Sbjct: 74 SASIMVK 80
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.9 bits (135), Expect = 3e-10
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+ V EG C + + V W + + T + ++ P VL + +
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGG---YHVLTLRQLA 78
Query: 275 MADRGNYYC 283
+ D G Y
Sbjct: 79 LKDSGTIYF 87
Score = 44.3 bits (105), Expect = 4e-06
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 12/64 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDDAGQ 180
T +C ++ + W+ + + +T+R+ + D+G
Sbjct: 32 TFRCRISPANYEP---VHWFLDKTPLHA----NELNEIDAQPGGYHVLTLRQLALKDSGT 84
Query: 181 YSCR 184
Sbjct: 85 IYFE 88
Score = 29.3 bits (66), Expect = 0.73
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 DTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSS 64
D ++ EG+ C ++ +E V W L+ ++ +
Sbjct: 22 DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 55.5 bits (134), Expect = 3e-10
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSV 267
L V +G ++R + P V+W N R + KG +
Sbjct: 11 AKILDPAYQVDKGGRVRFVV-ELADPKLEVKWY-KNGQEIRPSTKYIFEH---KGC-QRI 64
Query: 268 LQIDEATMADRGNYYCHGNNVAT 290
L I+ M D YY +
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKC 87
Score = 55.1 bits (133), Expect = 4e-10
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----S 167
++P Y+V + + P ++ WYK + I S +
Sbjct: 14 LDPAYQVDKGG-RVRFVVELADPKL----EVKWYKNGQEIRP----STKYIFEHKGCQRI 64
Query: 168 ITIRKTTVDDAGQYSCRLIDPKST 191
+ I + D +Y D K +
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKCS 88
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 57.5 bits (139), Expect = 4e-10
Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 30/166 (18%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
P TL+C PP D Y+ K + S Q + + I AG+Y C
Sbjct: 24 PVTLRCQ--GPPGVDLYR--LEKLSSS----------RYQDQAVLFIPAMKRSLAGRYRC 69
Query: 184 RLIDPK--STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
+ S + L V KP+ V G + L+C + R
Sbjct: 70 SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC----------QTRY 119
Query: 242 GNDTYF--RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
G D + + A+ I T A G Y C+
Sbjct: 120 GFDQFALYKEGDPAPYKNPERWYRAS--FPIITVTAAHSGTYRCYS 163
Score = 29.0 bits (65), Expect = 1.5
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 17/79 (21%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
V + + L C PP +R+ + R Q + L I +
Sbjct: 19 VPLEKPVTLRC---QGPPGVDLYRLEKLSSSRYQDQAVLF-------------IPAMKRS 62
Query: 277 DRGNYYCHGNNVATRNSQP 295
G Y C N + S P
Sbjct: 63 LAGRYRCSYQN-GSLWSLP 80
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 4e-10
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 213 ETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+T+ V+EGE EC++ S W + S R + + K L +
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQATRQGRKYI----LVVR 70
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
EA +D G + + +A + VR +
Sbjct: 71 EAAPSDAGEVVFSVRGLTS------KASLIVRERSGPS 102
Score = 48.9 bits (117), Expect = 7e-08
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
+ +C ++ +W G K++ S R ++ + +R+ DAG
Sbjct: 25 SCSFECVLSHESA--SDPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDAG 78
Query: 180 QYSCR 184
+
Sbjct: 79 EVVFS 83
Score = 28.5 bits (64), Expect = 1.1
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 30 DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS--I 84
E++EG + C+L+ W + G+ + SS T KY +
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-------RFQATRQGRKYILVV 69
Query: 85 HEAILE 90
EA
Sbjct: 70 REAAPS 75
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 55.5 bits (134), Expect = 4e-10
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
I+ P+ K + + E++ L C + P V W + + L + + T
Sbjct: 14 IVYPSGK--VYVAAVRLERVVLTC-ELCRPWAEVRWT-KDGEEVVESPALLLQK---EDT 66
Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATR 291
L + + D G Y C ++ +
Sbjct: 67 -VRRLVLPAVQLEDSGEYLCEIDDESAS 93
Score = 52.8 bits (127), Expect = 3e-09
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
L C + P ++ W K + + E S L K+ + + ++D+G+Y
Sbjct: 32 VLTCELCRPWA----EVRWTKDGEEVVE----SPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 182 SCRLIDPKST 191
C + D ++
Sbjct: 84 LCEIDDESAS 93
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 55.4 bits (133), Expect = 5e-10
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPEKGTAN 265
ET+TV EG+ L L+C+ +++W N+ + +L H
Sbjct: 9 ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSAN---Q 65
Query: 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ + T+ D G Y C + + V V V
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVS-----TKEVKVIV 99
Score = 38.8 bits (90), Expect = 3e-04
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 126 TLKCNVTSPPPGDDYQIVW--------YKGNKSITEATELSGRLTQSKD-SITIRKTTVD 176
TLKC + + + W + + + ++ + SIT+ T+
Sbjct: 20 TLKCVTSLRK---NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE 213
D G Y C +++ + V+ +
Sbjct: 77 DEGVYKCLH----YSDSVSTKEVKVIVLATMKGEFCR 109
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 5e-10
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
L V E C P TV WR R+ G+ + S+ E T L I
Sbjct: 18 LQVEEKGTAVFTC-KTEHPAATVTWR-KGLLELRASGKHQPSQ--EGLTL--RLTISALE 71
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
AD Y C +R A + V+ +
Sbjct: 72 KADSDTYTCDIGQAQSR------AQLLVQGRRSGP 100
Score = 52.7 bits (127), Expect = 4e-09
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
C P + W KG + SG+ S++ +TI D+ Y
Sbjct: 27 VFTCKTEHPAA----TVTWRKGLLELRA----SGKHQPSQEGLTLRLTISALEKADSDTY 78
Query: 182 SCR 184
+C
Sbjct: 79 TCD 81
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 7e-10
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
E V GE + L C + + P V W + R + + +GT ++L I
Sbjct: 16 EDQWVAPGEDVELRCELSRAGTP-VHWL-KDRKAIRKSQKYDVV---CEGT-MAMLVIRG 69
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
A++ D G Y C + A ++V K
Sbjct: 70 ASLKDAGEYTCEVEASKS------TASLHVEEK 96
Score = 49.6 bits (119), Expect = 3e-08
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
L+C ++ + W K K+I + S + + + IR ++ DAG+Y
Sbjct: 27 ELRCELSRAGT----PVHWLKDRKAIRK----SQKYDVVCEGTMAMLVIRGASLKDAGEY 78
Query: 182 SCRLIDPKST 191
+C + KST
Sbjct: 79 TCEVEASKST 88
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 58.3 bits (141), Expect = 7e-10
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
TL+C+ +++ YK ++ ++S + T AG Y+CR
Sbjct: 42 TLRCH--YRHRFNNFM--LYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTCRG 93
Query: 186 IDPKSTNTT-----PLA---QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTV 237
P S P+ + KP+ V GE++ L+C S
Sbjct: 94 SHPHSPTGWSAPSNPVVIMVTGNHR---KPSLLAHPGPLVKSGERVILQC---WSDIMFE 147
Query: 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
+ + + + R+ H AN I +A G Y C+G+
Sbjct: 148 HFFLHKEGISKDPSRLVGQIHDGVSKAN--FSIGPMMLALAGTYRCYGSV 195
Score = 46.8 bits (111), Expect = 4e-06
Identities = 44/269 (16%), Positives = 67/269 (24%), Gaps = 28/269 (10%)
Query: 33 IMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEA 87
+ G + + C F R F + N++ Y+ +
Sbjct: 35 VPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS 94
Query: 88 ILESGYVQSSLFIPRMNAITGNYD-----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQI 142
S S+ P + +TGN+ P V L+C S + +
Sbjct: 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGE-RVILQC--WSDIMFEHF-- 149
Query: 143 VWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS--TNTTPLAQA 199
+K G SK + +I + AG Y C + + P
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209
Query: 200 DFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
D V + V GE + L C S R G R
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLP------ 263
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHG 285
K G Y C G
Sbjct: 264 -AVRKVNRTFQADFPLGPATHGGTYRCFG 291
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 55.0 bits (132), Expect = 9e-10
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEH 258
I KP + TV GE + V PT++W G D ++ ++L E
Sbjct: 11 IEKP-----QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 259 PEKGT--ANSVLQIDEATMADRGNYYCHGNNVA 289
E+ + +QI +A GNY C
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD 98
Score = 40.0 bits (93), Expect = 1e-04
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----------SITIRKTTV 175
T V + I W+KG K + A++ L + + I K
Sbjct: 26 TFIAKVKAEDLLRKPTIKWFKG-KWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84
Query: 176 DDAGQYSCR 184
+ AG Y C
Sbjct: 85 NFAGNYRCE 93
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 54.3 bits (131), Expect = 1e-09
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKGTANSV 267
E V G+++ + V V W + + F+++ R K + G +
Sbjct: 16 EDQQVFVGDRVEMAV-EVSEEGAQVMWMKNGVELTREDSFKARYRFK-----KDGK-RHI 68
Query: 268 LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
L + DRG Y N EA + V K
Sbjct: 69 LIFSDVVQEDRGRYQVITNGGQC------EAELIVEEK 100
Score = 53.9 bits (130), Expect = 1e-09
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
+ V+ Q++W K +T R KD + +D G+Y
Sbjct: 27 EMAVEVSEEGA----QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY 82
Query: 182 SCR 184
Sbjct: 83 QVI 85
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 54.2 bits (130), Expect = 1e-09
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEH 258
+M+P + V G + V G+ PP V+W G D + ++L +
Sbjct: 8 VMRP-----QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 259 PEKGT--ANSVLQIDEATMADRGNYYCHGNN 287
++ + L I +A A G+Y C +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVST 93
Score = 46.5 bits (110), Expect = 6e-07
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 13/89 (14%)
Query: 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
G + + P+ T V + W+KG + + G+ Q D
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW--VDLSSKVGQHLQLHD 61
Query: 167 SI-----------TIRKTTVDDAGQYSCR 184
S I G Y C
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCE 90
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 53.9 bits (130), Expect = 1e-09
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
LTV E+ +C V T +W N R RI +S G L ID+
Sbjct: 16 ADLTVKAAEQAVFKC-EVSDEKVTGKWY-KNGVEVRPSKRITIS---HVGR-FHKLVIDD 69
Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
D G+Y + A S A +
Sbjct: 70 VRPEDEGDYTFVPDGYALSLS----AKLNFL 96
Score = 51.6 bits (124), Expect = 7e-09
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
KC V+ WYK + S R+T S + I +D G Y
Sbjct: 27 VFKCEVSDEKV----TGKWYKNGVEVRP----SKRITISHVGRFHKLVIDDVRPEDEGDY 78
Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTA 209
+ + + L + V P++
Sbjct: 79 TFVPDGYALSLSAKLNFLEIKVS-GPSS 105
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 53.9 bits (130), Expect = 1e-09
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
K +E T GE++ LEC V V+W + G + + R ++ +G +L
Sbjct: 12 KQLEDTTAYCGERVELEC-EVSEDDANVKWFKNGEEIIPGPKSRYRIR---VEGK-KHIL 66
Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
I+ AT AD Y + A + V +K
Sbjct: 67 IIEGATKADAAEYSVMTTGGQS------SAKLSVDLK 97
Score = 52.7 bits (127), Expect = 3e-09
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
L+C V+ + W+K + I R + + I T DA +Y
Sbjct: 26 ELECEVSEDDA----NVKWFKNGEEIIP--GPKSRYRIRVEGKKHILIIEGATKADAAEY 79
Query: 182 SCRLIDPKST 191
S +S+
Sbjct: 80 SVMTTGGQSS 89
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.9 bits (130), Expect = 1e-09
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
LT E++ L C + W + + + K L + EA
Sbjct: 20 LTFTTSERVVLTC-ELSRVDFPATWY-KDGQKVEESELLVVKMDGRKHR----LILPEAK 73
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ D G + C V+ V V+
Sbjct: 74 VQDSGEFECRTEGVSA------FFGVTVQD 97
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
L C ++ WYK + + E S L D + + + V D+G++
Sbjct: 29 VLTCELSRVDF----PATWYKDGQKVEE----SELLVVKMDGRKHRLILPEAKVQDSGEF 80
Query: 182 SCR 184
CR
Sbjct: 81 ECR 83
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 53.7 bits (129), Expect = 1e-09
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPEKGT 263
L + +TV+EG L C V + +++W +D RI+L
Sbjct: 12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV-RASWHE 70
Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ + + + +++D G Y C + + S+ A++ V
Sbjct: 71 LS--ISVSDVSLSDEGQYTCSLFTMPVKTSK---AYLTVLG 106
Score = 34.1 bits (78), Expect = 0.012
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-------------SITIRK 172
L C V + + W + +D SI++
Sbjct: 25 ILTCRVDQND---NTSLQWSNPAQQTL----YFDDKKALRDNRIELVRASWHELSISVSD 77
Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207
++ D GQY+C L T ++A V+ P
Sbjct: 78 VSLSDEGQYTCSL----FTMPVKTSKAYLTVLGVP 108
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 55.2 bits (133), Expect = 2e-09
Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 18/185 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
T+ C +YQ + +K I AGQYSC
Sbjct: 20 QVTICCQ--GNYGAVEYQ--LHFEGSLFAVDRPKPPE-RINKVKFYIPDMNSRMAGQYSC 74
Query: 184 RLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
S + L ++ PT + VI GEK+ C + + + +
Sbjct: 75 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKE 134
Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
G ++ + G + + T A RG Y C G+ S P+E V
Sbjct: 135 GRSSHVQRG----------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP-VK 183
Query: 302 VRVKG 306
+ V G
Sbjct: 184 LLVTG 188
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 53.1 bits (128), Expect = 3e-09
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
V G+ R V P V+W N + +I + G L+I +
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKW-YHNGVELQESSKIHYTN--TSGV--LTLEILDCH 72
Query: 275 MADRGNYYCHGNNVA 289
D G Y N
Sbjct: 73 TDDSGTYRAVCTNYK 87
Score = 50.0 bits (120), Expect = 3e-08
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 13/66 (19%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
NV P ++ WY + E S ++ + ++ I DD+
Sbjct: 25 NTRFILNVQSKPTA----EVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDS 76
Query: 179 GQYSCR 184
G Y
Sbjct: 77 GTYRAV 82
Score = 26.5 bits (59), Expect = 5.4
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 30 DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSS 64
+ G + +VKW NG + +SS
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS 53
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 52.7 bits (127), Expect = 3e-09
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
++ V G E V W+ + + + L+ + T L + E
Sbjct: 16 RSVEVAAGSPAVFEA-ETERAGVKVRWQ-RGGSDISASNKYGLATEGTRHT----LTVRE 69
Query: 273 ATMADRGNYYC 283
AD+G+Y
Sbjct: 70 VGPADQGSYAV 80
Score = 52.0 bits (125), Expect = 5e-09
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
+ ++ W +G I+ S + + + ++T+R+ D G Y
Sbjct: 27 VFEAETERAGV----KVRWQRGGSDISA----SNKYGLATEGTRHTLTVREVGPADQGSY 78
Query: 182 SCR 184
+
Sbjct: 79 AVI 81
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 DTEIMEGAPINISCILTIFE-QVKWQLNGRNINQSS 64
E+ G+P +V+WQ G +I+ S+
Sbjct: 17 SVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASN 52
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 52.3 bits (126), Expect = 3e-09
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+ V GE E + P +W++ + ++ E +K L +
Sbjct: 15 VEVFVGETAHFEI-ELSEPDVHGQWKL-KGQPLAASPDCEIIEDGKKHI----LILHNCQ 68
Query: 275 MADRGNYYCHGNNVAT 290
+ G N +
Sbjct: 69 LGMTGEVSFQAANTKS 84
Score = 50.0 bits (120), Expect = 3e-08
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
+ ++ P W + + S +D + + + G+
Sbjct: 24 HFEIELSEPDV----HGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMTGEV 75
Query: 182 SCR 184
S +
Sbjct: 76 SFQ 78
Score = 26.5 bits (59), Expect = 4.9
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 30 DTEIMEGAPINISCILTIFE-QVKWQLNGRNINQSS 64
E+ G + L+ + +W+L G+ + S
Sbjct: 14 GVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASP 49
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.8 bits (127), Expect = 4e-09
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
EG L+C + S VEW+ R GR L + + LQI + +
Sbjct: 18 KEASEGATATLQCEL--SKVAPVEWK-KGPETLRDGGRYSLKQDGTRCE----LQIHDLS 70
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
+AD G Y C T A + VR F
Sbjct: 71 VADAGEYSCMCGQERT------SATLTVRALPARF 99
Score = 48.9 bits (117), Expect = 8e-08
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
TL+C ++ P + W KG +++ + GR + +D + I +V DAG+Y
Sbjct: 27 TLQCELSKVAP-----VEWKKGPETLRD----GGRYSLKQDGTRCELQIHDLSVADAGEY 77
Query: 182 SCR 184
SC
Sbjct: 78 SCM 80
Score = 30.0 bits (68), Expect = 0.29
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQS 63
E EGA + C L+ V+W+ +
Sbjct: 17 TKEASEGATATLQCELSKVAPVEWKKGPETLRDG 50
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 52.3 bits (126), Expect = 4e-09
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 215 LTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
EG ++ C + T V W + + +++ E G A +L + +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWY-FGVRQLENSEKYEITY--EDGVA--ILYVKDI 65
Query: 274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
T D G Y C N +S ++ + VKG
Sbjct: 66 TKLDDGTYRCKVVNDYGEDS----SYAELFVKGVR 96
Score = 50.8 bits (122), Expect = 2e-08
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
C + Q+ WY G + + S + + + + ++ T D
Sbjct: 18 HVKYVCKIENYDQS---TQVTWYFGVRQLEN----SEKYEITYEDGVAILYVKDITKLDD 70
Query: 179 GQYSCR 184
G Y C+
Sbjct: 71 GTYRCK 76
Score = 26.5 bits (59), Expect = 4.3
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 30 DTEIMEGAPINISCILTIF---EQVKWQLNGRNINQSS 64
EG + C + + QV W R + S
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 56.3 bits (136), Expect = 5e-09
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR--SQGRIKLSEHPEKGTANSVLQID 271
+ V EG ++ C G PPP + W S GR+ + + L++
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP-------DGTLEVR 446
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
A + D G Y C N +S ++ V+
Sbjct: 447 YAQVQDNGTYLCIAANAGGNDS----MPAHLHVR 476
Score = 40.5 bits (95), Expect = 6e-04
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
C PP I+W K + A + +GRLT D ++ +R V D G Y C
Sbjct: 404 QFVCRADGDPPPA---ILWLSPRKHLVSA-KSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 51.6 bits (124), Expect = 9e-09
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
L V+EG L C++ P V+W + R + L + E L +
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP-VKWC-YGNNVLRPGDKYSLRQ--EGAML--ELVVRNLR 71
Query: 275 MADRGNYYCHGNNVATR 291
D G Y C + T
Sbjct: 72 PQDSGRYSCSFGDQTTS 88
Score = 50.4 bits (121), Expect = 2e-08
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
TL+C ++S + W GN + + + ++ + +R D+G+Y
Sbjct: 27 TLRCVLSSVAA----PVKWCYGNNVLRP----GDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Query: 182 SCR 184
SC
Sbjct: 79 SCS 81
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 54.5 bits (131), Expect = 1e-08
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 10/95 (10%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
G+ L + C V N+ +S N L
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVR------NGDLFFK 306
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
+ + D G Y C+ + V ++V
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLS----VELKVYN 337
Score = 42.5 bits (100), Expect = 9e-05
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 17/113 (15%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
T++C+ VW + + +G ++ + +K V+D G Y+C
Sbjct: 265 TIRCDTKQQGMTK----VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC-- 318
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
+ T ++ + T L P E
Sbjct: 319 ---YAMGETFNETLSVELKVYNFTLHGHHDT--------LNAAADPWSHPQFE 360
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 50.1 bits (120), Expect = 3e-08
Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 190 STNTTPLAQADFDVIMKPTA--KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247
S+ ++ A V P + + EG L C + S VEW
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWW-KGHETL 58
Query: 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
R R L + G LQI D G Y C T A + VR
Sbjct: 59 RDGDRHSLR---QDGARCE-LQIRGLVAEDAGEYLCMCGKERT------SAMLTVRAM 106
Score = 47.7 bits (114), Expect = 3e-07
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
L+C ++ P + W+KG++++ + R + +D + IR +DAG+Y
Sbjct: 38 VLRCELSKMAP-----VEWWKGHETLRD----GDRHSLRQDGARCELQIRGLVAEDAGEY 88
Query: 182 SCR 184
C
Sbjct: 89 LCM 91
Score = 30.4 bits (69), Expect = 0.26
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQS 63
+ E EGA + C L+ V+W +
Sbjct: 28 NEEATEGATAVLRCELSKMAPVEWWKGHETLRDG 61
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 52.1 bits (124), Expect = 3e-08
Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 38/207 (18%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+ PK E + + C+ T P ++ + T L+ L +
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTTCNQP----EVGGLE--------TSLNKILLDEQAQWKHY 54
Query: 172 K-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE----TLTVIEGEKLRLE 226
+ + C T + + +V + + V V G+ +E
Sbjct: 55 LVSNISHDTVLQCHF-----TCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIE 109
Query: 227 CLVVGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYY 282
C V P T+ GN+T P A + A D N+
Sbjct: 110 CRVPTVEPLDSLTLFLFRGNETLHYET---FGKAAPAPQEATATFNS-TADREDGHRNFS 165
Query: 283 CH--------GNNVATRNSQPNEAFVY 301
C G N+ ++S P +Y
Sbjct: 166 CLAVLDLMSRGGNIFHKHSAPKMLEIY 192
Score = 29.0 bits (64), Expect = 1.6
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 201 FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260
F+V ++P + L V L + C P V + L +
Sbjct: 3 FEVHVRP-----KKLAVEPKGSLEVNC-STTCNQPEVGG-------LETSLNKILLDEQA 49
Query: 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
+ V I + CH + S + VY
Sbjct: 50 QWKHYLVSNI-----SHDTVLQCHFTCSGKQESMNSNVSVY 85
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 50.1 bits (119), Expect = 3e-08
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANSV 267
ET + I G + C S T W N+ ++ + G ++
Sbjct: 18 ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77
Query: 268 LQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYV 302
L++ G Y C +N + S A + +
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSSYSV--XAXLTI 111
Score = 37.0 bits (85), Expect = 0.001
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------ELSGRLTQSKDSITIRKTTVDD 177
+ C+ S W N+++ +A G L + + +R
Sbjct: 29 SFTCSAASSSD-SPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87
Query: 178 AGQYSCRLIDPKSTNTTPLA 197
G Y C + + ++ + A
Sbjct: 88 EGXYQCVISNHFGSSYSVXA 107
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 50.6 bits (120), Expect = 4e-08
Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 17/141 (12%)
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG 231
K T + T+ A AD ++ + TV+ G + L+C V
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64
Query: 232 SPPPTVEWR--------IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+++W G R RI+L + I +AD G Y C
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDN-RIQLVTSTPH---ELSISISNVALADEGEYTC 120
Query: 284 HGNNVATRNSQPNEAFVYVRV 304
+ R A V V
Sbjct: 121 SIFTMPVR-----TAKSLVTV 136
Score = 31.3 bits (70), Expect = 0.20
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 24/97 (24%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-------------SITI 170
LKC V D + W + G +D SI+I
Sbjct: 55 TVVLKCQVKDHE---DSSLQWSNPAQQTL----YFGEKRALRDNRIQLVTSTPHELSISI 107
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207
+ D G+Y+C + T A++ V+ P
Sbjct: 108 SNVALADEGEYTCSI----FTMPVRTAKSLVTVLGIP 140
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 49.8 bits (119), Expect = 5e-08
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH---PEKGTANSVLQID 271
L V +GE L C G P PT+EW + S P +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 272 EATMADRGNYYCHGNNVA 289
+ D G Y C N
Sbjct: 78 RKSRPDEGVYVCVARNYL 95
Score = 42.1 bits (99), Expect = 2e-05
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSI-TEATELSGRLTQSKD--- 166
P + P TL C P P I WYKG + + T+ +
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTP----TIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 167 ---SITIRKTTVDDAGQYSC 183
I + + D G Y C
Sbjct: 70 FFLRIVHGRKSRPDEGVYVC 89
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 49.5 bits (118), Expect = 6e-08
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT---------EATELSGRLTQSKD-SITIRKTTV 175
L+C+++S Q+ W + ++ + + R+ +T++ TV
Sbjct: 22 ILQCHLSSTTA-QVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTV 80
Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK 210
+D G+Y C T + +V+ A+
Sbjct: 81 NDTGEYFCIYHTYPDGTYT--GRIFLEVLESSVAE 113
Score = 43.0 bits (101), Expect = 1e-05
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGND---TYFRSQGRIKLSEHPEK--GTAN 265
++ +G + L+C + + V W + G ++
Sbjct: 11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG 70
Query: 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
L + T+ D G Y+C T +++ V S
Sbjct: 71 LGLTLQSLTVNDTGEYFCI---YHTYPDGTYTGRIFLEVLESS 110
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 52.4 bits (126), Expect = 8e-08
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF---RSQGRIKLSEHPEKGTANSVLQ 269
L V EG L+C + +V W N T + RI + + L
Sbjct: 349 ADLNVTEGMAAELKC-RASTSLTSVSWITPNGTVMTHGAYKVRIAVLS-------DGTLN 400
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
T+ D G Y C +N + A + V G
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTT----ASATLNVTG 433
Score = 49.4 bits (118), Expect = 8e-07
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
LKC ++ + W N ++ R+ D ++ TV D G Y+C
Sbjct: 360 ELKCRASTSLT----SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 51.9 bits (124), Expect = 8e-08
Identities = 35/190 (18%), Positives = 54/190 (28%), Gaps = 32/190 (16%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLTQSKDS---------ITIR 171
L C VTS P I W++G E R+T +S I+I
Sbjct: 22 ILHCTVTSLIP--VGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISIS 79
Query: 172 KTTVDDAGQYSC-------RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLR 224
T DAG Y C + KS T L+ + +
Sbjct: 80 NITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP---QHTVS 136
Query: 225 LECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGN 280
C G P T++W + S + + E + +S ++
Sbjct: 137 FTCESHGFSPRDITLKWFKNGNE--LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 281 YYCHGNNVAT 290
C +V
Sbjct: 195 VICEVAHVTL 204
Score = 33.4 bits (76), Expect = 0.081
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 213 ETLTVIEGEKLRLECLVVGS-----------PPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
++++V GE L C V P E I N +SE ++
Sbjct: 11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAREL-IYNQKEGHFPRVTTVSESTKR 69
Query: 262 GTANSVLQIDEATMADRGNYYC 283
+ + I T AD G YYC
Sbjct: 70 ENMDFSISISNITPADAGTYYC 91
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 50.4 bits (120), Expect = 2e-07
Identities = 37/191 (19%), Positives = 51/191 (26%), Gaps = 20/191 (10%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
L+C S + ++ G T SK + +I D AG Y C
Sbjct: 25 ILQCW--SDVRFQ--HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80
Query: 185 LIDPKSTNTT-----PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
S PL + KP+ TV+ GE + L C S
Sbjct: 81 GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLS 140
Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG--NNVATRNSQPNE 297
R G R K G Y C G + S ++
Sbjct: 141 REGEAHERRFS-------AGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSD 193
Query: 298 AFVYVRVKGKS 308
+ V V G
Sbjct: 194 P-LLVSVTGNP 203
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 50.1 bits (119), Expect = 2e-07
Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 36/190 (18%)
Query: 126 TLKCNVTSPPPGD--DYQIVWYKGNK-----------------SITEATELSGRLTQSKD 166
T+ CN+ P + I W+ + + +S +S D
Sbjct: 22 TIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGD 81
Query: 167 -SITIRKTTVDDAGQYSCRLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKL 223
S+ + +++AG+Y C ++ K+ T L +V+ P ++L+ ++ +
Sbjct: 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL-----EVVASPASRLLLDQVGMKENED 136
Query: 224 RLECLVVGSPPP--TVEW-RIGNDTYFRSQ--GRIKLSEHPEKG----TANSVLQIDEAT 274
+ C G P + W + + + + S L+++ +
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196
Query: 275 MADRGNYYCH 284
Y C
Sbjct: 197 EDPGTVYQCV 206
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 49.3 bits (117), Expect = 2e-07
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT--ELSGRLTQSKDSITIRKTTVDDAGQY 181
FTL C V P + +G + + + R + + T+ D +
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165
Query: 182 SCR 184
SCR
Sbjct: 166 SCR 168
Score = 48.5 bits (115), Expect = 4e-07
Identities = 34/205 (16%), Positives = 54/205 (26%), Gaps = 29/205 (14%)
Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
D++P+ E L C+ P P + + + L + I
Sbjct: 6 DLQPRVAFVERGGSLWLNCSTNCPRP----ERGGLETSLRRNGTQRGLRWLARQLVDIR- 60
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECL 228
+ Q C + T A+ +P + L GE L C
Sbjct: 61 -----EPETQPVCFFRCARRTLQ---ARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCR 112
Query: 229 VVGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH- 284
V G+ P T+ G R E P A + N+ C
Sbjct: 113 VPGAGPRASLTLTLLRGAQELIRRS---FAGEPPRARGAVLTATVLARREDHGANFSCRA 169
Query: 285 -------GNNVATRNSQPNEAFVYV 302
G + +S P E +
Sbjct: 170 ELDLRPHGLGLFENSSAPRELRTFS 194
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 50.9 bits (122), Expect = 3e-07
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQ 269
L + EG L+C P +V+W + N T RI + + L
Sbjct: 360 RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLN-------DGTLN 410
Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
++D G Y C NVA ++ A Y+ V
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSN----ASAYLNVST 443
Score = 45.5 bits (108), Expect = 1e-05
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
LKC + W N ++ R++ D ++ + D G Y+C
Sbjct: 371 ELKCRTPPMS-----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 3e-07
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
TV G+++ L+C + + P W N + R+K+ +KG L I A
Sbjct: 17 QTVNLGKEICLKCEISENIPGK--WTK-NGLPVQESDRLKVV---QKGR-IHKLVIANAL 69
Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
D G+Y + A V+V
Sbjct: 70 TEDEGDYVFAPDAYNVTLP----AKVHVIS 95
Score = 45.8 bits (109), Expect = 9e-07
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
LKC ++ P W K + E S RL + + I +D G
Sbjct: 24 EICLKCEISENIP-----GKWTKNGLPVQE----SDRLKVVQKGRIHKLVIANALTEDEG 74
Query: 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209
Y D + A VI P++
Sbjct: 75 DYVFA-PDAYNVTLP----AKVHVISGPSS 99
Score = 28.8 bits (65), Expect = 0.72
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSS 64
D + G I + C ++ KW NG + +S
Sbjct: 16 DQTVNLGKEICLKCEISENIPGKWTKNGLPVQESD 50
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 47.2 bits (112), Expect = 4e-07
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG---------------NKSITEATE----LSGRLTQSKD 166
L C+ T P G + W KG +++T L G L +
Sbjct: 13 YLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDV 72
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTN 192
S+ I+ T+DD G Y CR+ P N
Sbjct: 73 SLIIKNVTLDDHGTYCCRIQFPGLMN 98
Score = 44.5 bits (105), Expect = 3e-06
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 21/92 (22%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPT---VEWRI----------------GNDTYFRSQGR 252
++ V G+ L C T + W + ++ R
Sbjct: 1 MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60
Query: 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
+L KG + L I T+ D G Y C
Sbjct: 61 YQLKGDLNKGDVS--LIIKNVTLDDHGTYCCR 90
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 50.5 bits (120), Expect = 4e-07
Identities = 24/196 (12%), Positives = 50/196 (25%), Gaps = 21/196 (10%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYS 182
+ V + P G +W G+ + T A + + T G +
Sbjct: 95 NVYVKVNNGPLG---NPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLA 151
Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
++ + + V G+ +C +G +
Sbjct: 152 I-----DEVKVLGHPCTRTPHFLRI-----QNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 243 -NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
D IK++ + + T D G Y C N A +
Sbjct: 202 GIDVRDAPLKEIKVTSSRRF---IASFNVVNTTKRDAGKYRCMIRTEGGV-GISNYAELV 257
Query: 302 VRVKGKSFGYDRVEAI 317
V+ ++ ++
Sbjct: 258 VKEPPVPIAPPQLASV 273
Score = 34.4 bits (78), Expect = 0.054
Identities = 22/198 (11%), Positives = 51/198 (25%), Gaps = 10/198 (5%)
Query: 49 EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESG--YVQSSLFIPRMNAI 106
W ++G + A + + ++ + +
Sbjct: 106 GNPIWNISGDPTRTWN--RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCT 163
Query: 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
+ + + T +C+ + + +A ++T S+
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSAIGRTV---AGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 167 SI---TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKL 223
I + TT DAG+Y C + + A+ P A +
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWI 280
Query: 224 RLECLVVGSPPPTVEWRI 241
+L + P V +
Sbjct: 281 QLNANSINGDGPIVAREV 298
Score = 31.3 bits (70), Expect = 0.53
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 223 LRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
L + V P W I G+ T ++ + +S + + T +G
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPN---FYQVIFEVITSGHQGYL 150
Query: 282 YCHGNNV 288
V
Sbjct: 151 AIDEVKV 157
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 46.9 bits (111), Expect = 6e-07
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 213 ETLTVIEGEKLRLECL---VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANS 266
++ + ++ C+ V G P P++ W N + I +
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 267 VLQIDEATMADRGNYYC 283
L++++ T + GNY
Sbjct: 64 CLRLNQPTHVNNGNYTL 80
Score = 39.9 bits (93), Expect = 2e-04
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSI-------TEATELSGRLTQSKDSITIRKTTVDD 177
+ +V P P + W + TE E + T + + + T +
Sbjct: 19 CIPFSVDGQPAP----SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 74
Query: 178 AGQYSCR 184
G Y+
Sbjct: 75 NGNYTLL 81
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 47.4 bits (112), Expect = 9e-07
Identities = 28/203 (13%), Positives = 47/203 (23%), Gaps = 34/203 (16%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
+ P + + C+ + P I K + +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLL---------PGNNRKVYE 53
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLV 229
+ V + Q C + A+ V P + L G++L L C V
Sbjct: 54 LSNVQEDSQPMCYSN---CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQV 110
Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC--- 283
G P TV G R A + + C
Sbjct: 111 EGGAPRAQLTVVLLRGEKELKREP--------AVGEPAEVTTTVLVRRDHHGAQFSCRTE 162
Query: 284 -----HGNNVATRNSQPNEAFVY 301
G + S P + +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTF 185
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 47.2 bits (111), Expect = 1e-06
Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 58/215 (26%)
Query: 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
+YKV L C + S + W K + + + + ++
Sbjct: 5 NIEYKVSISGTSVELTCPLDSDEN-----LKWEKNGQELPQK---------HDKHLVLQD 50
Query: 173 TT-VDDAGQYSCR-----------------LIDPKSTNTTPLAQADFDVIMKPTAKLVET 214
+ V+D+G Y C D + A D K ++ +
Sbjct: 51 FSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110
Query: 215 LTVI------EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
++ + L C G T++W + I +
Sbjct: 111 KNLVQVDGSRGDGSVLLTC---GLTDKTIKW-------LKDGSIISPLNATKN-----TW 155
Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
+ RG Y C G S P + VY R
Sbjct: 156 NLGNNAKDPRGTYQCQGAK---ETSNPLQ--VYYR 185
Score = 46.4 bits (109), Expect = 2e-06
Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 35/178 (19%)
Query: 36 GAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS------------ 83
G + ++C L E +KW+ NG+ + Q + ED+ Y
Sbjct: 14 GTSVELTCPLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73
Query: 84 ------IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPF----TLKCNVTS 133
+ + G+ + K V L C +T
Sbjct: 74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTD 133
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
I W K I+ L +K++ + D G Y C+ S
Sbjct: 134 KT------IKWLKDGSIISP-------LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 46.1 bits (109), Expect = 2e-06
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 20/89 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT-------------EATELSGRLTQSKD------ 166
L C ++ ++ WY+ S +A E GR K+
Sbjct: 25 ELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGK 84
Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTT 194
++ I+ D G Y+C D
Sbjct: 85 VALRIQNVRFSDEGGYTCFFRDHSYQEEA 113
Score = 31.8 bits (72), Expect = 0.10
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 29/130 (22%)
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLEC----------LVV-----GSPPPTVEWRIGN 243
F VI + + G++ L C + V +R G
Sbjct: 5 GQFRVIGPG-----HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGK 59
Query: 244 DTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
D +GR +L + L+I +D G Y C + Q EA
Sbjct: 60 DQDAEQAPEYRGRTELLKESIG-EGKVALRIQNVRFSDEGGYTCF---FRDHSYQ-EEAA 114
Query: 300 VYVRVKGKSF 309
V ++V+ +
Sbjct: 115 VELKVEDPFY 124
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.2 bits (106), Expect = 2e-06
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 213 ETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTANSV 267
++++V G+ + V G PT++W G + +S R E +
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 268 --LQIDEATMADRGNYYCHGNNVATRNS 293
L I + + DRG Y T +S
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDS 107
Score = 37.1 bits (85), Expect = 0.001
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI-----------TIRKTT 174
+ V D I W+KG E SG K+S I K
Sbjct: 31 VVVAKVNGKELPDKPTIKWFKGKWL--ELGSKSGARFSFKESHNSASNVYTVELHIGKVV 88
Query: 175 VDDAGQYSCRL 185
+ D G Y +
Sbjct: 89 LGDRGYYRLEV 99
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 46.8 bits (110), Expect = 4e-06
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
LT + G+ + L C V TV W + S L +
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLR--------KPAAGSHPSRWAGMGRRLLLR 65
Query: 272 EATMADRGNYYCHGNN 287
+ D GNY C+
Sbjct: 66 SVQLHDSGNYSCYRAG 81
Score = 45.2 bits (106), Expect = 1e-05
Identities = 26/183 (14%), Positives = 44/183 (24%), Gaps = 30/183 (16%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
TL C P + + W + R + +R + D+G YSC
Sbjct: 23 SVTLTCPGVEPED--NATVHWVLRKPAAGS---HPSRWAGMGRRLLLRSVQLHDSGNYSC 77
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIG 242
P V + P E+ +L C EW
Sbjct: 78 YRAG------RPAGTVHLLVDVPP-------------EEPQLSCFRKSPLSNVVCEWGPR 118
Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
+ + L + + Q + + C +S V +
Sbjct: 119 STPS--LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYI---VSM 173
Query: 303 RVK 305
V
Sbjct: 174 CVA 176
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 46.8 bits (111), Expect = 6e-06
Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 190 STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
+ A D V EG+ C V+ S PP V W +
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTW-------HKD 519
Query: 250 QGRIKLSEHPEKGTANSV--LQIDEATMADRGNYYCHGNN 287
+K S K + L I+ D+G Y N
Sbjct: 520 DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Score = 40.6 bits (95), Expect = 6e-04
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
C V S PP + W+K ++ + ++ + R + +TI + DD G+Y+ R
Sbjct: 501 NFYCRVIASSPP----VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 43.8 bits (103), Expect = 7e-06
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 23/92 (25%)
Query: 126 TLKCNVTSP-PPGDDYQIVWYK----------------GNKSITEATELSGRLTQSKD-- 166
TL C+ S DD W G I E R+ D
Sbjct: 18 TLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS 77
Query: 167 ----SITIRKTTVDDAGQYSCRLIDPKSTNTT 194
SI I D G ++C + +P
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK 109
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 25/116 (21%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEW-------------------RIGNDTYFRS 249
+ G ++ L C S + W + D
Sbjct: 7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
+ RI+ P + + I +D G + C N + ++ +YV K
Sbjct: 67 KERIQWVGDPSWKDGS--IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 43.4 bits (102), Expect = 8e-06
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 21/87 (24%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
TL C ++ W +G + L G +++
Sbjct: 16 TLPCTYSTYR--GITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNT 193
S+TI + D+G Y CR+ P N
Sbjct: 74 SLTIENSVESDSGLYCCRVEIPGWFND 100
Score = 40.7 bits (95), Expect = 8e-05
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 19/85 (22%)
Query: 216 TVIEGEKLRLECLVVGSPPP-TVEW----------------RIGNDTYFRSQGRIKLSEH 258
+ G + L C T W G+ ++ R L H
Sbjct: 8 KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGH 67
Query: 259 PEKGTANSVLQIDEATMADRGNYYC 283
+G + L I+ + +D G Y C
Sbjct: 68 ISEGDVS--LTIENSVESDSGLYCC 90
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 45.8 bits (108), Expect = 9e-06
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI-----TEATELSGRLTQSKDSITIRKTTVDDAGQ 180
L C V+ PG QI W + + + T +T G L ++ +T+ +
Sbjct: 28 QLLCLVSGYTPGT-IQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT 86
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPP--- 235
Y+C++ T + +A L + + + CLVV P
Sbjct: 87 YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGT 146
Query: 236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+ W + R + + T S L + + Y C
Sbjct: 147 VQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQC 195
Score = 28.9 bits (64), Expect = 2.6
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 220 GEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATM 275
++L CLV G +P + W S E S L + +
Sbjct: 24 PPTIQLLCLVSGYTPGTIQITWLEDGQV--MDVDLSTASTTQEGELASTQSELTLSQKHW 81
Query: 276 ADRGNYYCH 284
Y C
Sbjct: 82 LSDRTYTCQ 90
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.9 bits (105), Expect = 1e-05
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 213 ETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+ V G +L C + + +V+WR G DT + + T SVL +
Sbjct: 15 PVVAVALGASRQLTCRLACADRGASVQWR-GLDTSLGAV---------QSDTGRSVLTVR 64
Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
A+++ G C G+ + + V + V
Sbjct: 65 NASLSAAGTRVCVGSC----GGRTFQHTVQLLV 93
Score = 44.5 bits (104), Expect = 1e-05
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 14/120 (11%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
L C + G + W + S+ +GR +T+R ++ AG C
Sbjct: 24 SRQLTCRLACADRGAS--VQWRGLDTSLGAVQSDTGRSV-----LTVRNASLSAAGTRVC 76
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP---TVEWR 240
T V P V ++ G+ + C P + +
Sbjct: 77 VGSCGGRTFQ---HTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFS 132
Score = 27.9 bits (61), Expect = 4.1
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 16/77 (20%)
Query: 125 FTLKCNVTSPPPGDDYQIVWY--------KGNKSITEATELSGRLTQSKDSITIRKT--- 173
+ C P D + + +G +++ + Q + + R T
Sbjct: 112 PEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERW 171
Query: 174 -----TVDDAGQYSCRL 185
C+
Sbjct: 172 RLPPLGTPVPPALYCQA 188
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 44.5 bits (105), Expect = 1e-05
Identities = 34/169 (20%), Positives = 48/169 (28%), Gaps = 23/169 (13%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
L+C S + + ++ G + T SK + +I + T D AG Y C
Sbjct: 26 ILQCW--SDVMFEHFL--LHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81
Query: 185 LIDPKSTNTT-----PLA---QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236
S PL ++ KP+ TV+ GE + L C S
Sbjct: 82 GSVTHSPYQVSAPSDPLDIVIIGLYE---KPSLSAQPGPTVLAGENVTLSCSSRSSYDMY 138
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
R G R K G Y C G
Sbjct: 139 HLSREGEAHERRLP-------AGPKVNGTFQADFPLGPATHGGTYRCFG 180
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 45.4 bits (107), Expect = 1e-05
Identities = 30/207 (14%), Positives = 50/207 (24%), Gaps = 29/207 (14%)
Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDD----YQIVWYKGNKSITEATELSGRLTQSKDS 167
I P+ V + FT C + IVW + +I + T S S
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTAS--S 65
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC 227
+T + Q +C ++ + + P + L C
Sbjct: 66 VTFTDIASLN-IQLTCNIL-TFGQLEQNVYGITIISGLPP------------EKPKNLSC 111
Query: 228 LVVGSPPPTVEWRIGNDT--------YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
+V EW G +T ++ T S
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 280 NYYCHGNNVA-TRNSQPNEAFVYVRVK 305
+ N S +VK
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVK 198
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 42.2 bits (99), Expect = 2e-05
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 18/96 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLTQSKD-----S 167
++C + W + S + + GRL S S
Sbjct: 20 KIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVS 79
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203
+ I +DD Y+C + + ++
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
Score = 36.1 bits (83), Expect = 0.003
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 29/116 (25%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT---VEW------------RIGNDTYFRSQ----GRI 253
E++T ++++C+ V+W + Q GR+
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN----EAFVYVRVK 305
K+S + LQI+ M DR +Y C V + N + + +RV+
Sbjct: 69 KVSHKVP---GDVSLQINTLQMDDRNHYTCE---VTWQTPDGNQVIRDKIIELRVR 118
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 42.1 bits (99), Expect = 3e-05
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 126 TLKCNVTSPPPGDDY--QIVWYKGNKSITEAT---------ELSGRLTQSKD-------- 166
TL C + P + Q+ W + +S + A S RL
Sbjct: 19 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78
Query: 167 -SITIRKTTVDDAGQYSCR 184
S+ + V+D G Y+C
Sbjct: 79 ASLRMFGLRVEDEGNYTCL 97
Score = 41.0 bits (96), Expect = 6e-05
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 21/113 (18%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT-----VEWR------------IGNDTYFRSQGRIKL 255
+ G+ + L C + + W + R++
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 256 SEHPEKGTANSV-LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
+ L++ + D GNY C T +++RV K
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCL---FVTFPQGSRSVDIWLRVLAK 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 75/290 (25%)
Query: 2 SMIHLCLSLLAIFVHQSISADGKITYFGDTEIM-EGAPINISCILTIFEQVKWQLNGRNI 60
++I L++L ++ F + A I +L++ W +
Sbjct: 357 TIIESSLNVLEPAEYRK--------MFDRLSVFPPSAHIPTI-LLSLI----WF-DVIKS 402
Query: 61 NQSSVDSGFAATANLTEDN--FKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKV 118
+ V + + + + SI LE ++ ++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSI----VD----- 451
Query: 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKG----NKSITEATELSGRLTQSKDSITIRKTT 174
Y +P T + PP D Y + G N E L R
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTL------------FRMVF 497
Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK--LRLECLVVGS 232
+D R ++ K + + A + ++ TL ++ K +
Sbjct: 498 LDF------RFLEQKIRHDSTAWNA--------SGSILNTLQQLKFYKPYICDND----- 538
Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
P E + F + L +L+I A MA+ +
Sbjct: 539 --PKYERLVNAILDFLPKIEENLICSKYT----DLLRI--ALMAEDEAIF 580
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 41.8 bits (98), Expect = 4e-05
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG----------NKSITEATELSGRLT--QSKDSITIRKT 173
TL + + P + Q+ W+ KS ++ GR+ ++ I K
Sbjct: 23 TLNISES--LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV 80
Query: 174 TVDDAGQYSCRLIDPKSTNTT 194
+D Y R++
Sbjct: 81 QKEDNSTYIMRVLKKTGNEQE 101
Score = 36.0 bits (83), Expect = 0.003
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 23/107 (21%)
Query: 212 VETLTVIEGEKLRLECLVV------------GSPPPTVEWRIGNDTYFRS--QGRIKLSE 257
+ +TV+ G + L VEW YF S +GR++L
Sbjct: 11 LVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD- 69
Query: 258 HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
+ L I + D Y V + E + ++V
Sbjct: 70 -----PQSGALYISKVQKEDNSTYIMR---VLKKTGNEQEWKIKLQV 108
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 41.4 bits (97), Expect = 4e-05
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 25/96 (26%)
Query: 126 TLKCNVTSPPP-----------------GDDYQIVWYKGNKSITE-ATELSGRLTQSKD- 166
L C T P D I+ Y G+K + +L GR+ + +
Sbjct: 24 YLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND 83
Query: 167 ------SITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
SI + + D G Y C++ +
Sbjct: 84 LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKI 119
Score = 33.3 bits (76), Expect = 0.035
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 27/97 (27%)
Query: 213 ETLTVIEGEKLRLECLVVGSP----PPTVEW----------------RIGNDTYFRS--- 249
E + +GE L C SP P +EW G+ Y
Sbjct: 13 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPD 72
Query: 250 -QGRIKL-SEHPEKGTANSVLQIDEATMADRGNYYCH 284
+GR+ S + G A+ + + ++D G Y C
Sbjct: 73 LKGRVHFTSNDLKSGDAS--INVTNLQLSDIGTYQCK 107
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 43.8 bits (103), Expect = 5e-05
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%)
Query: 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS--ITEATELSGRLTQSKDS 167
P + L C +T W + + E S S
Sbjct: 250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 309
Query: 168 -ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLR 224
+ + ++C P+S + +P L+ + + E +
Sbjct: 310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 369
Query: 225 LECLVVGSPPP--TVEWRIGN-----DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
L CL G P V W G+ + Y R + S+ S+L++
Sbjct: 370 LTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429
Query: 278 RGNYYC 283
+ C
Sbjct: 430 GDTFSC 435
Score = 38.8 bits (90), Expect = 0.002
Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 34/198 (17%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDAGQ 180
+ C V P + + W + + +T + SG L + +T+ T
Sbjct: 145 VIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKS 204
Query: 181 YSCRL---------------IDPKSTNTTPLAQA-DFDVIMKPTAKLVETLT--VIEGEK 222
+C + + +P P L ++ G +
Sbjct: 205 VTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSE 264
Query: 223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG-----TANSVLQIDEATMA 276
L C + G V + T+ S G+ + PE+ + +SVL
Sbjct: 265 ANLTCTLTGLRDASGVTF-----TWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN 319
Query: 277 DRGNYYCHGNNVATRNSQ 294
+ C ++
Sbjct: 320 HGKTFTCTAAYPESKTPL 337
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 41.0 bits (95), Expect = 8e-05
Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 30/110 (27%)
Query: 114 PKYKVFEYR-VPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------------------- 153
+V + L C+ I W KG
Sbjct: 10 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 69
Query: 154 -------ATELSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
+ GR + + ++ + D G+Y C++
Sbjct: 70 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
Score = 29.8 bits (66), Expect = 0.65
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
VE +++ GR ++ A L++ D G Y+C
Sbjct: 68 VESDSYKESFGDFLGRASVANL-----AAPTLRLTHVHPQDGGRYWC 109
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 40.2 bits (94), Expect = 1e-04
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 213 ETLTVIEGEKLRLEC-------------LVVGSPPPTVEW-----RIGNDTYFRSQGRIK 254
E + EG+ L ++C + + R +++ GRI
Sbjct: 7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 66
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
L ++ + G +++ + D G Y C ++ R++
Sbjct: 67 LEDYHDHGLLR--VRMVNLQVEDSGLYQC-----VIYQPPKEPHMLFDRIR 110
Score = 26.7 bits (59), Expect = 5.9
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 20/85 (23%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG------------NKSITEATEL-SGRLTQSKD------ 166
+KC + Q W + + + GR+
Sbjct: 18 DVKC-DYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 76
Query: 167 SITIRKTTVDDAGQYSCRLIDPKST 191
+ + V+D+G Y C + P
Sbjct: 77 RVRMVNLQVEDSGLYQCVIYQPPKE 101
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 20/78 (25%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
TL C S G + W G + L G +++
Sbjct: 16 TLPCIY-STHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNV 74
Query: 167 SITIRKTTVDDAGQYSCR 184
S+TI T V D G Y C
Sbjct: 75 SLTIENTVVGDGGPYCCV 92
Score = 38.8 bits (90), Expect = 3e-04
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 20/89 (22%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRI----------------GNDTYFRSQGRIK 254
+ + G + L C+ + W + G + R +
Sbjct: 5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQ 64
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYC 283
L + +G + L I+ + D G Y C
Sbjct: 65 LKGNISEGNVS--LTIENTVVGDGGPYCC 91
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 40.4 bits (94), Expect = 1e-04
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 32/91 (35%)
Query: 126 TLKCNVTSPPPGDD-YQIVWYKGN----------------KSITEATELSGRLTQSKD-- 166
L C++ P PG + W + + S S RL+
Sbjct: 21 ELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQ 80
Query: 167 -------------SITIRKTTVDDAGQYSCR 184
++ + TV+D G Y+C
Sbjct: 81 STGQDTEAELQDATLALHGLTVEDEGNYTCE 111
Score = 31.5 bits (71), Expect = 0.13
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 33/122 (27%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT----VEW-------------------RIGNDTYFRS 249
+ G + L C ++ P V W +
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69
Query: 250 QGRIKLSEHPEKGTANSV-------LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
R+ + ++ L + T+ D GNY C AT ++
Sbjct: 70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE---FATFPKGSVRGMTWL 126
Query: 303 RV 304
RV
Sbjct: 127 RV 128
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 41.0 bits (96), Expect = 2e-04
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 20/174 (11%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI----TIRKTTVDDAGQY 181
L C +T W + + R S+ + +
Sbjct: 23 NLTCTLTGLRDASGVTFTWTPSSGK-SAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTF 81
Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV----ETLTVIEGEKLRLECLVVG-SPPP- 235
+C P+S + +P L+ E L E + L CL G SP
Sbjct: 82 TCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELA--LNELVTLTCLARGFSPKDV 139
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN------SVLQIDEATMADRGNYYC 283
V W + + + E S+L++ + C
Sbjct: 140 LVRWLQ-GSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSC 192
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 41.8 bits (98), Expect = 2e-04
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------SITIRKTTVDDA 178
+ C V D QI W+ N + A + ++ I+
Sbjct: 259 IVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT-HREDYNSTLRVVSALPIQHQDWMSG 317
Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT----VIEGEKLRLECLVVGSPP 234
++ C++ + P+ + A V L + +++ L C+V P
Sbjct: 318 KEFKCKVNNKDLP--APIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMP 375
Query: 235 P--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
VEW T + + + S L++++ +R +Y C
Sbjct: 376 EDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSC 426
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 38.8 bits (90), Expect = 3e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
TL C+ + W KG+ ++ L G++ +
Sbjct: 15 TLPCHY-LSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEV 73
Query: 167 SITIRKTTVDDAGQYSCR 184
S+TI T D+G Y CR
Sbjct: 74 SLTISNTNRGDSGVYCCR 91
Score = 37.2 bits (86), Expect = 0.001
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 20/89 (22%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEW----------------RIGNDTYFRSQGRIK 254
+T+ G+ + L C + ++ W G R +
Sbjct: 4 DTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYT 63
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYC 283
L + G + L I D G Y C
Sbjct: 64 LLGKVQFGEVS--LTISNTNRGDSGVYCC 90
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 39.0 bits (91), Expect = 3e-04
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 25/111 (22%)
Query: 213 ETLTVIEGEKLRLEC-------------LVVGSPPPTVEWRIGNDTYFRS-----QGRIK 254
E + EG+ L ++C + + + ++ GRI
Sbjct: 12 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 71
Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
L ++ + G +++ + D G Y C ++ R++
Sbjct: 72 LEDYHDHGLLR--VRMVNLQVEDSGLYQC-----VIYQPPKEPHMLFDRIR 115
Score = 28.3 bits (63), Expect = 1.6
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG------------NKSITEATE-LSGRLTQSKD------ 166
+KC + Q W + + GR+
Sbjct: 23 DVKC-DYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 81
Query: 167 SITIRKTTVDDAGQYSCRLIDPKST 191
+ + V+D+G Y C + P
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKE 106
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 37.6 bits (87), Expect = 8e-04
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 213 ETLTVIEGEKLRLEC--------------LVVGSPPPTVEWRIGNDTYFRS--QGRIKLS 256
E + +EG + + C I ++ Y S GR L+
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYC 283
PE GT V+ I + + D G Y C
Sbjct: 68 NFPENGTF--VVNIAQLSQDDSGRYKC 92
Score = 34.9 bits (80), Expect = 0.008
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 16/76 (21%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT----------EATELSGRLTQSKD------SIT 169
++ C + W + +++ +GR + +
Sbjct: 19 SITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVN 78
Query: 170 IRKTTVDDAGQYSCRL 185
I + + DD+G+Y C L
Sbjct: 79 IAQLSQDDSGRYKCGL 94
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 37.4 bits (87), Expect = 9e-04
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLTQSKD------SITIRKTTVDD 177
T+ C + WY+ + E+ GR ++ + S+ I TV+D
Sbjct: 19 TINCVLRDASYALGS-TCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVED 77
Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDV 203
G Y C L L + +
Sbjct: 78 GGTYRCGLGVAGGYCDYALCSSRYAE 103
Score = 31.2 bits (71), Expect = 0.15
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPT--VEW-RI----GNDTYFRSQGRIKLSEHPEKGTAN 265
++T GE L + C++ + W R GN+ GR E G+ +
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGR--YVETVNSGSKS 65
Query: 266 SVLQIDEATMADRGNYYC 283
L+I++ T+ D G Y C
Sbjct: 66 FSLRINDLTVEDGGTYRC 83
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 22/91 (24%)
Query: 213 ETLTVIEGEKLRLECLV------VGSPPPTVEWRIG--------------NDTYFRSQGR 252
+ + + G L + C+ S T W R +GR
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67
Query: 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+L + + N L + + D G Y
Sbjct: 68 AELMGNMDHKVCN--LLLKDLKPEDSGTYNF 96
Score = 32.5 bits (74), Expect = 0.058
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 20/80 (25%)
Query: 126 TLKCNVTSP---PPGDDYQIVWYKGNKSITEA-----------------TELSGRLTQSK 165
+ C + P P + +WY + EL G +
Sbjct: 19 LIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKV 78
Query: 166 DSITIRKTTVDDAGQYSCRL 185
++ ++ +D+G Y+ R
Sbjct: 79 CNLLLKDLKPEDSGTYNFRF 98
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 39.1 bits (91), Expect = 0.001
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 22/174 (12%)
Query: 126 TLKCNVT--SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------SITIRKTTVDD 177
+ C V S + + WY + A R Q +T+ +
Sbjct: 268 EVTCVVVDVSHEDPE-VKFNWYVDGVEVHNAKTKP-REEQYNSTYRVVSVLTVLHQDWLN 325
Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT----VIEGEKLRLECLVVGSP 233
+Y C++ + P+ + +P V TL + ++ L CLV G
Sbjct: 326 GKEYKCKVSNKALP--APIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFY 383
Query: 234 PP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGNYYC 283
P VEW + + G+ S L +D++ + C
Sbjct: 384 PSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSC 435
Score = 28.3 bits (63), Expect = 3.4
Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 29/186 (15%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDA 178
L C V P + + W G + T + SG + S S+ ++
Sbjct: 149 TAALGCLVKDYFP-EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT 205
Query: 179 GQYSCRL------------IDPKSTNTTPLAQ--ADFDVIMKPTAKLVETL---TVIEGE 221
Y C + +PKS + T +++ P+ L T++
Sbjct: 206 QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISR 265
Query: 222 KLRLECLVVG-SP-PPTVEW-RIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMAD 277
+ C+VV S P V++ + + E SVL + +
Sbjct: 266 TPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN 325
Query: 278 RGNYYC 283
Y C
Sbjct: 326 GKEYKC 331
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 37.2 bits (86), Expect = 0.001
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 15/75 (20%)
Query: 126 TLKCNVTSPPPGDDYQIV-WYKGNKS-----ITEATELSGRLTQSKD---------SITI 170
L C+ + V W++ E GRL + I
Sbjct: 26 FLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHI 85
Query: 171 RKTTVDDAGQYSCRL 185
R DA Y CR+
Sbjct: 86 RDVRGHDASIYVCRV 100
Score = 33.4 bits (76), Expect = 0.031
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 17/86 (19%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEW-----------RIGNDTYFRSQGRIKLSE 257
+ +EG L C S +V W R G + + S
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 258 HPEKGTANSVLQIDEATMADRGNYYC 283
A L I + D Y C
Sbjct: 75 FLHDHQAE--LHIRDVRGHDASIYVC 98
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 36.9 bits (85), Expect = 0.001
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 12/87 (13%)
Query: 206 KPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK- 261
TA+LV L V +GE + S W + + ++ ++ +
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 262 -----GTANSVLQIDEATMADRGNYYC 283
G + L + D G
Sbjct: 64 RIEQKGLQHR-LILHAVKHQDSGALVG 89
Score = 33.8 bits (77), Expect = 0.015
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 30 DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATAN---LTEDNFKYS--I 84
D ++ +G S L+ Q W LNG + + + A + + ++ +
Sbjct: 17 DVQVYDGEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLIL 76
Query: 85 HEAILE 90
H +
Sbjct: 77 HAVKHQ 82
Score = 31.9 bits (72), Expect = 0.090
Identities = 5/68 (7%), Positives = 17/68 (25%), Gaps = 15/68 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE------ATELSGRLTQSKD----SITIRKTTV 175
++++ G W+ + + + R + + +
Sbjct: 27 VFSLDLSTIIQG-----TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH 81
Query: 176 DDAGQYSC 183
D+G
Sbjct: 82 QDSGALVG 89
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 38.1 bits (88), Expect = 0.002
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL----TQSKDS-ITIRKTTVDDAGQ 180
L+C V + P + W + + + T S S + + +
Sbjct: 32 KLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER 91
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTV----IEGEKLRLECLVVGSPPP- 235
++C + + PL+++ + T L+ + ++ L CLV G P
Sbjct: 92 FTCTVQHEEL--PLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRD 149
Query: 236 -TVEWRIGN 243
+ W +
Sbjct: 150 IEIRWLRDH 158
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 36.4 bits (84), Expect = 0.002
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 126 TLKCNVTSPPPGD--DYQIVWYKGNKSI------------TEATELSGRLTQSKDSIT-- 169
L C + + + W + + ++ GR + DS T
Sbjct: 13 DLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLR 72
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203
+ + D G Y C + K T + Q + ++
Sbjct: 73 LHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSEL 106
Score = 30.6 bits (69), Expect = 0.22
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 216 TVIEGEKLRLECLVVGSPPP-----TVEWRIGND----TYFRSQGRIKLSEHPE-KGTAN 265
E L C S V W+ + + + + S H + G +
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFD-SVHSKYMGRTS 63
Query: 266 SV-----LQIDEATMADRGNYYC 283
L++ + D+G Y C
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQC 86
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 36.8 bits (84), Expect = 0.002
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 216 TVIEGEKLRLECLV-VGSPPPTVEWRIGNDT---YFRSQGRIKLSEHPEKGTANSVLQID 271
+ GE ++EC V P V W N T ++ S + VL
Sbjct: 25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 272 EATMADRGNYYCHGNN 287
++D G+Y C N
Sbjct: 85 PIHLSDNGSYSCSTNF 100
Score = 29.1 bits (64), Expect = 0.90
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 14/70 (20%)
Query: 124 PFTLKCNVT--SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--------SITIRKT 173
F ++C V P + W K N +I E+ +L S + + +
Sbjct: 31 LFKIECPVKYCVHRP----NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPI 86
Query: 174 TVDDAGQYSC 183
+ D G YSC
Sbjct: 87 HLSDNGSYSC 96
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 36.5 bits (84), Expect = 0.003
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 26/115 (22%)
Query: 213 ETLTVIEGEKLRLECLV-------VGSPPPTVEWRIGNDTYF----------------RS 249
++TV EG + + C S P W + +
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVR 303
+ R L P+ L I +A M+D G Y+ + N + ++ V V
Sbjct: 74 RDRFHLLGDPQTKNCT--LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT 126
Score = 27.6 bits (61), Expect = 2.7
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 126 TLKCNVTSPPPGDDYQ----IVWYKGNKSITE-------------ATELSGRLTQSKD-- 166
++C+ + P D W++ I+ E R D
Sbjct: 25 HVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQ 84
Query: 167 ----SITIRKTTVDDAGQYSCRL 185
+++IR + DAG+Y R+
Sbjct: 85 TKNCTLSIRDARMSDAGRYFFRM 107
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 36.2 bits (84), Expect = 0.003
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
T+ C + D Y + K + E S +++D I G YSC
Sbjct: 27 TVVC--SYSDKHDLYN--MVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
T+ C+ D Y + K + E S +++D I G YSC
Sbjct: 27 TVVCS--YSDKHDLYN--MVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 37.7 bits (86), Expect = 0.004
Identities = 11/107 (10%), Positives = 20/107 (18%), Gaps = 7/107 (6%)
Query: 77 EDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPP 136
+ SI+ + + + + + L C + S
Sbjct: 470 DQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHA 529
Query: 137 GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
W + I T G Y C
Sbjct: 530 ----TYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFC 569
Score = 35.0 bits (79), Expect = 0.031
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 221 EKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
+ L C + S T WR + + + +L I+ T G+
Sbjct: 516 SRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNC--------ILFIENLTAQQYGH 566
Query: 281 YYCH 284
Y+C
Sbjct: 567 YFCE 570
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 36.1 bits (83), Expect = 0.004
Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 113 EPKYKVFEY-RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SIT 169
E ++ E +V F ++ S ++ + K I E + + ++ +
Sbjct: 44 ELAVEILEKGQVRFWMQAEKLSSNA----KVSYIFNEKEIFEGPKYKMHIDRNTGIIEMF 99
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLA--QADFDVIMK 206
+ K +D G Y+ ++ D K+T + L + + K
Sbjct: 100 MEKLQDEDEGTYTFQIQDGKATGHSTLVLIGDVYKKLQK 138
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 35.6 bits (81), Expect = 0.005
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 216 TVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
+++ G+ LEC V + P V W N T + S EK + +L +
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81
Query: 275 MADRGNYYCHGNN 287
D G+Y C N
Sbjct: 82 PNDNGSYRCSANF 94
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 36.7 bits (83), Expect = 0.009
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
LKC+ S ++ W N + + + ++ I + D+G Y C
Sbjct: 552 ELKCSQKSNLA----RVFWKFQNGVLKAES--PKYGLMGRKNLLIFNLSEGDSGVYQCLS 605
Query: 186 IDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
+ T +A+ +V + P + TL+V++ E R+ V+ +
Sbjct: 606 EERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHHHH 661
Score = 31.7 bits (70), Expect = 0.34
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 225 LECLVVGSPPPTVEWRIGNDTY-FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
L+C S V W+ N S + L I + D G Y C
Sbjct: 553 LKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVYQC 603
Query: 284 H 284
Sbjct: 604 L 604
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.4 bits (79), Expect = 0.010
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG-NKSITEAT----------ELSGRLTQSKD--SITIRK 172
TLK + P G +I W N+ I E E GR+ ++ ++ I
Sbjct: 22 TLKIHKD--PLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISN 79
Query: 173 TTVDDAGQYSCRLIDPKSTNTT 194
+D G Y R++
Sbjct: 80 VRKEDKGTYYMRVLRETENELK 101
Score = 29.8 bits (67), Expect = 0.40
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 24/108 (22%)
Query: 212 VETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDT--------------YFRSQGRIKLS 256
+ + G + L+ P + W + +GR+ L
Sbjct: 10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
E+ N L I D+G YY V + + V
Sbjct: 70 EN------NGALHISNVRKEDKGTYYMR---VLRETENELKITLEVFD 108
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.0 bits (83), Expect = 0.014
Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 37/187 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK----------GNKSITEATELSGRLTQSKD----SITIR 171
T+ C TS + WY+ + + + R + SK S+ I
Sbjct: 19 TISCTGTSS---GSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAIS 75
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTV-----IEGEKLRLE 226
+D Y C + + V+ +P A TL ++ K L
Sbjct: 76 GLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLV 135
Query: 227 CLVVG-SP-PPTVEWRI-------GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
CL+ P TV W+ G +T S+ A+S L +
Sbjct: 136 CLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY------AASSYLSLTPEQWKS 189
Query: 278 RGNYYCH 284
+Y C
Sbjct: 190 HRSYSCQ 196
Score = 31.7 bits (72), Expect = 0.36
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 4/107 (3%)
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP----T 236
Y C + S + T++ + C+VV
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK 354
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
W + ++ + + ++ SVL + D Y C
Sbjct: 355 FNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKC 401
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 34.3 bits (78), Expect = 0.017
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNK-----------------SITEATELSGRLTQSKDSI 168
+ C SP + ++ + + + + +G + ++ ++
Sbjct: 20 SFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNL 79
Query: 169 TIRKTTVDDAGQYSCRL 185
TI+ D G Y C++
Sbjct: 80 TIQGLRAMDTGLYICKV 96
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 33.6 bits (76), Expect = 0.020
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
+ YKV L C +I+W +K+I + +
Sbjct: 12 QTPYKVSISGTTVILTCPQYPGS-----EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 66
Query: 173 TTVDDAGQYSC 183
+ ++ +G Y C
Sbjct: 67 SELEQSGYYVC 77
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.032
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 213 ETLTVIEGEKLRLECLVV-------------GSPPPTVEWRIGNDTYFRS--QGRIKLSE 257
+ L + G+ L + C + + + R + +
Sbjct: 18 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD 77
Query: 258 HPEKGTANSVLQIDEATMADRGNYYC 283
P+ G + + + D G+Y+C
Sbjct: 78 DPDAGFF--TVTMTDLREEDSGHYWC 101
Score = 32.3 bits (73), Expect = 0.068
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI----------TEATELSGRLTQSKD------SIT 169
T++C P + W K ++ + R T D ++T
Sbjct: 29 TVRC-QYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVT 87
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPL 196
+ +D+G Y CR+ P + +
Sbjct: 88 MTDLREEDSGHYWCRIYRPSDNSVSKS 114
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 34.2 bits (78), Expect = 0.034
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP--T 236
G SC P V + P K +TL + ++ + V P
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFP-PKPKDTLMISRTPEVTCVVVDVSHEDPEVK 59
Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
W + ++ + + ++ SVL + + Y C
Sbjct: 60 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC 106
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.4 bits (74), Expect = 0.047
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
TL+C+ P Q + + + Q + T ++DAG Y CR
Sbjct: 23 TLRCH--LPRMAAWVQ--LWLNGTLRFDKEKDKE---QDAAEFSFAVTNLEDAGTYQCR 74
Score = 30.8 bits (70), Expect = 0.15
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
V G+ + L C P ++ + G ++ + +K + +
Sbjct: 15 GVSLGDTVTLRCH---LPRMAAWVQLWLN------GTLRFDKEKDKEQDAAEFSFAVTNL 65
Query: 276 ADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKS 308
D G Y C S ++ V + + +
Sbjct: 66 EDAGTYQCRYQVSEPLWTSNQSDP-VELVLTIEG 98
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 33.4 bits (77), Expect = 0.051
Identities = 38/201 (18%), Positives = 56/201 (27%), Gaps = 42/201 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWY--KGNKS----ITEATEL-SG---RLTQSKD----SITIR 171
TL C ++ W K + I G R + S ++TI
Sbjct: 19 TLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTIT 78
Query: 172 KTTVDDAGQYSCRLIDPKS------TNTTPLAQADFDVIMKPTAKL----VETLTVIEGE 221
+D Y C L T T L Q PT L E L+
Sbjct: 79 GAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPK----SSPTVTLFPPSSEELS---TA 131
Query: 222 KLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANSVLQIDEATMA 276
K L C + P TV+W++ + G + A+S L +
Sbjct: 132 KATLVCTITDFYPGVVTVDWKVDGTP--VTAGMETTQPSKQSNNKYMASSYLTLTARAWE 189
Query: 277 DRGNYYCHGNNVATRNSQPNE 297
+Y C T +
Sbjct: 190 RHSSYSCQ----VTHEGHSSN 206
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 32.4 bits (74), Expect = 0.055
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI----------TEATELSGRLTQSKD------SIT 169
T++C TS DY+ W +G +E R++ + ++T
Sbjct: 20 TVQCRYTSG--WKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVT 77
Query: 170 IRKTTVDDAGQYSCRL 185
+ + DAG Y C +
Sbjct: 78 MEDLRMSDAGIYWCGI 93
Score = 29.3 bits (66), Expect = 0.71
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 205 MKPTAKLVETLTVIEGEKLRLECLVV------------GSPPPTVEWRIGNDTYFRS--Q 250
M+ E ++ E L ++C G P + + + D + +
Sbjct: 1 MEDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKK 60
Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
R+ + ++ + +++ M+D G Y+C
Sbjct: 61 NRVSIRDNQRDFIFT--VTMEDLRMSDAGIYWC 91
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 32.0 bits (73), Expect = 0.061
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQY 181
T C P +++ + ++S TE + + S+ I + +AG Y
Sbjct: 25 HVTFVC--RGPVGVQTFRL--ERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPY 80
Query: 182 SCR 184
C
Sbjct: 81 RCI 83
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 217 VIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
+ G + C P +R+ TY ++ + S + +ID
Sbjct: 20 IPLGSHVTFVC---RGPVGVQTFRLERESRSTYNDTEDVSQASPSESEAR----FRIDSV 72
Query: 274 TMADRGNYYCHG 285
+ + G Y C
Sbjct: 73 SEGNAGPYRCIY 84
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 33.3 bits (76), Expect = 0.073
Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 60/212 (28%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK---------------GNKSITEATELSGRLTQSKD---- 166
+ C++ G I WY S+ + +S +
Sbjct: 21 EITCDLAE---GSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRK 77
Query: 167 --SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE----------- 213
+ +R +D+G Y C D + V K +
Sbjct: 78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQ 137
Query: 214 -------TLTVIEGEKLRLECLVVGS-PPPTVEW-------------RIGNDTYFRSQGR 252
++++ + + L CL S + W R G+D GR
Sbjct: 138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGR 197
Query: 253 IKLSEHPEKGTANSV-LQIDEATMADRGNYYC 283
++ K A SV L I + D Y+C
Sbjct: 198 YSVNF---KKAAKSVALTISALQLEDSAKYFC 226
Score = 29.0 bits (65), Expect = 1.6
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 16/86 (18%)
Query: 214 TLTVIEGEKLRLECLVVGSPPPTVEW----------RIGNDTYFRSQGRIKLSEHP---- 259
++ G + C + + W R+ + S ++ P
Sbjct: 11 SVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYD 70
Query: 260 --EKGTANSVLQIDEATMADRGNYYC 283
N + + D G YYC
Sbjct: 71 TYGSTRKNLRMILRNLIENDSGVYYC 96
Score = 26.7 bits (59), Expect = 9.7
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK----------GNKSITEATELSGRLTQSKD------SIT 169
TL C + Y I WYK + E SGR + + ++T
Sbjct: 155 TLNCLYETS--WWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALT 212
Query: 170 IRKTTVDDAGQYSCRLIDPKSTN 192
I ++D+ +Y C L + +
Sbjct: 213 ISALQLEDSAKYFCALGESLTRA 235
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.9 bits (73), Expect = 0.088
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLTQSKD------SITIRKTTVDD 177
T+ C V WY+ E+ GR ++ + S+ I TV D
Sbjct: 19 TINC-VVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKD 77
Query: 178 AGQYSC 183
+G Y C
Sbjct: 78 SGTYRC 83
Score = 30.0 bits (68), Expect = 0.38
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 213 ETLTVIEGEKLRLECLVVGS-------------PPPTVEWRIGNDTYFRSQGRIKLSEHP 259
+ +T GE L + C+V S P E I + GR E
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDG------GR--YVETV 59
Query: 260 EKGTANSV-LQIDEATMADRGNYYC 283
+G + S L+I++ T+ D G Y C
Sbjct: 60 NRG-SKSFSLRINDLTVKDSGTYRC 83
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 33.2 bits (74), Expect = 0.089
Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 18/124 (14%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
L C+ I W S + S ++TI+ DAGQY+C
Sbjct: 25 VLTCDTPEEDG-----ITWTLDQSS---------EVLGSGKTLTIQVKEFGDAGQYTCHK 70
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGND 244
+++ L D I K L C T W
Sbjct: 71 GGEVLSHSLLLLHKKEDGIWSTDILKD---QKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
Query: 245 TYFR 248
T
Sbjct: 128 TDLT 131
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 31.5 bits (71), Expect = 0.100
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 17/77 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNK-----------------SITEATELSGRLTQSKDSI 168
+ C + D+ ++ + + SG +S+ ++
Sbjct: 18 SFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNL 77
Query: 169 TIRKTTVDDAGQYSCRL 185
TI+ D G Y C++
Sbjct: 78 TIQGLRAVDTGLYLCKV 94
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 32.2 bits (73), Expect = 0.16
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 220 GEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
+ C+VV W + ++ + + ++ SVL +
Sbjct: 18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 77
Query: 276 ADRGNYYC 283
+ Y C
Sbjct: 78 LNGKEYKC 85
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 32.2 bits (73), Expect = 0.16
Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 30/146 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK---GNK-----SITEATELSGRLTQSKDSI-------TI 170
L+CN T+ + W++ + T+ +GRL + DS I
Sbjct: 20 ALRCNFTT----TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHI 75
Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTV--------IEGEK 222
R ++D+G Y C + L D V + T VE + I
Sbjct: 76 RDAQLEDSGTYFCAADTWHISEGYELGT-DKLVFGQGTQVTVEPKSQPPAKPSVFIMKNG 134
Query: 223 LRLECLVVGSPPP--TVEWRIGNDTY 246
+ CLV P T+ R
Sbjct: 135 TNVACLVKDFYPKEVTISLRSSKKIV 160
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 213 ETLTVIEGEKLRLECLVVGS----------PPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
L++ EG L C + ++ + + GR+K + ++
Sbjct: 9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKER 68
Query: 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
S L I +A + D G Y+C + V +G
Sbjct: 69 R-YSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQG 111
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.2 bits (73), Expect = 0.20
Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 23/184 (12%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKS---ITEATELSGRLTQSKDSITIRKTTVDDAGQ 180
TL C V P + + W G+ S T L L S+T+ +
Sbjct: 136 MVTLGCLVKGYFP-EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ET 193
Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL------------TVIEGEKLRLECL 228
+C + P S+ D KP V + T++ ++ C+
Sbjct: 194 VTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCV 253
Query: 229 VVG-SP-PPTVEW-RIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGNYYC 283
VV S P V++ ++ + E T S L I + + C
Sbjct: 254 VVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQ-FNSTFRVVSALPIMHQDWLNGKEFKC 312
Query: 284 HGNN 287
N+
Sbjct: 313 RVNS 316
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 30.6 bits (69), Expect = 0.22
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN---------KSITEATELSGRLTQSKD------SITI 170
+++C W + ++ A + +GR++ ++T+
Sbjct: 15 SVQC--PYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTL 72
Query: 171 RKTTVDDAGQYSCRLIDP 188
T +DAG Y C + P
Sbjct: 73 ENLTEEDAGTYWCGVDTP 90
Score = 27.9 bits (62), Expect = 1.7
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 213 ETLTVIEGEKLRLECL---------------VVGSPPPTVEWRIGNDTYFRSQGRIKLSE 257
T+ G L ++C + + + GR+ + +
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVE--TKGSAGKRNGRVSIRD 61
Query: 258 HPEKGTANSVLQIDEATMADRGNYYC 283
P + + ++ T D G Y+C
Sbjct: 62 SPANLSFT--VTLENLTEEDAGTYWC 85
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 30.3 bits (68), Expect = 0.27
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 18/86 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--------------GRLTQSKD--SIT 169
T N+ P I W S R+ ++
Sbjct: 18 TFPVNI--QEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLV 75
Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTP 195
I ++DAG Y + TT
Sbjct: 76 ISDLRMEDAGDYKADINTQADPYTTT 101
Score = 26.0 bits (57), Expect = 8.8
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
G + + Y RI N L I + M D G+Y +
Sbjct: 44 TPGDSETAPVVTVTHRNY---YERIHAL------GPNYNLVISDLRMEDAGDYKAD---I 91
Query: 289 ATRNSQPNEAFVY-VRV 304
T+ Y +++
Sbjct: 92 NTQADPYTTTKRYNLQI 108
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 31.6 bits (71), Expect = 0.27
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK-----------GNKSITEATELSGRLT------QSKDSI 168
TL C + Y + WYK S E E+SGR + S +
Sbjct: 22 TLDCVYETR--DTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNF 79
Query: 169 TIRKTTVDDAGQYSCRLIDPKSTN 192
TI + V D+ Y C L +T+
Sbjct: 80 TITASQVVDSAVYFCALSGFYNTD 103
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 31.3 bits (70), Expect = 0.28
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLE 226
++ I + ++ AG + L + + LV + V + + L
Sbjct: 73 TLQIPQVSLQFAGSGNLTLTLDRGI-------------LYQEVNLV-VMKVTQPDSNTLT 118
Query: 227 CLVVGSPPPTVE--WRIGNDTYFRS-QGRIKLSEHPEKGT 263
C V+G P + + N S Q ++ + PE G
Sbjct: 119 CEVMGPTSPKMRLILKQENQEARVSRQEKVIQVQAPEAGV 158
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 0.29
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 212 VETLTVIEGEKLRLECLV-VGSPPPTVEW-------------RIGNDTYFRSQGRIKLSE 257
T+ +E L ++C+ G W + + R+ + +
Sbjct: 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKD 68
Query: 258 HPEKGTANSVLQIDEATMADRGNYYC 283
+ + T + +++ D Y+C
Sbjct: 69 NQKNRTFT--VTMEDLMKTDADTYWC 92
Score = 30.3 bits (68), Expect = 0.35
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 18/76 (23%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI----------TEATELSGRLTQSKD------SIT 169
T++C + Y W +G +E R++ + ++T
Sbjct: 21 TVQC--VYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVT 78
Query: 170 IRKTTVDDAGQYSCRL 185
+ DA Y C +
Sbjct: 79 MEDLMKTDADTYWCGI 94
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 30.9 bits (69), Expect = 0.44
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 20/154 (12%)
Query: 112 IEPKYKVFEYRVPFTLKC----NVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS 167
I P+ V + FT C + IVW + +I + + S
Sbjct: 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY---TIINRTAS 65
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC 227
Q +C ++ + + P + L C
Sbjct: 66 SVTFTDIASLNIQLTCNIL-TFGQLEQNVYGITIISGLPP------------EKPKNLSC 112
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
+V EW G +T+ + +K K
Sbjct: 113 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHK 146
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 30.7 bits (69), Expect = 0.51
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 216 TVIEGEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
+ G ++ C+VV W I + +Q + + S L I
Sbjct: 28 VLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIV 87
Query: 272 EATMADRGNYYC 283
E + + C
Sbjct: 88 ERDWLNGKTFKC 99
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 29.6 bits (67), Expect = 0.51
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 126 TLKCNVTSPPPGDDYQIVWY-----KGNKSITEATELSGRLTQSKD------SITIRKTT 174
T+KC + G WY N+ + + GR ++ D S+ I
Sbjct: 19 TIKCVLKDHSCGLSS-TTWYRTQLGSTNE---KTISIGGRYDETVDKGSKSFSLRISDLR 74
Query: 175 VDDAGQYSC 183
V+D+G Y C
Sbjct: 75 VEDSGTYKC 83
Score = 27.3 bits (61), Expect = 3.0
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 23/102 (22%)
Query: 214 TLTVIEGEKLRLECLVVGS-------------PPPTVEWRIGNDTYFRSQGRIKLSEHPE 260
T+T GE L ++C++ T E I GR E +
Sbjct: 9 TITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTIS------IGGR--YDETVD 60
Query: 261 KGTANSV-LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
KG + S L+I + + D G Y C + + S P+
Sbjct: 61 KG-SKSFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAV 101
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 30.2 bits (68), Expect = 0.57
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 220 GEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
++ C+VV W + + +Q + + + + S L I
Sbjct: 18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW 77
Query: 276 ADRGNYYC 283
+ + C
Sbjct: 78 LNGKEFKC 85
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 29.0 bits (65), Expect = 0.87
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 126 TLKCNVTSPPPGDDYQIVWY--KGNKSITEATELSGRLTQSKD------SITIRKTTVDD 177
T+ C V + WY K + ++ + GR ++ + S+ I V+D
Sbjct: 19 TINC-VLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVED 77
Query: 178 AGQYSC 183
+G Y C
Sbjct: 78 SGTYKC 83
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 30.4 bits (67), Expect = 0.95
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-----RLTQSKDS-------ITIR 171
P L C V+ P ++ W + + G L D +
Sbjct: 310 PPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP 369
Query: 172 KTTVDDAGQ-YSCR 184
T + G Y+CR
Sbjct: 370 PVTTEQHGARYACR 383
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 29.9 bits (66), Expect = 1.0
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQ--IVWYKGNKSITEATELSGRLTQSKDSI 168
I + P T C + D + I+W G + + + I
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 169 TIRKTTVDDAGQYSCRL 185
T+ A SC L
Sbjct: 64 TLPHLNHTQAF-LSCSL 79
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 29.6 bits (67), Expect = 1.2
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 17/85 (20%)
Query: 214 TLTVIEGEKLRLECLVVGS-------------PPPTVEWRIGNDTYFRS--QGRIKLSEH 258
T+ V G L C + G T+ + + + +
Sbjct: 10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID 69
Query: 259 PEKGTANSVLQIDEATMADRGNYYC 283
K A VL+I + D G+YYC
Sbjct: 70 IAKNLA--VLKILAPSERDEGSYYC 92
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 28.3 bits (63), Expect = 1.3
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGN--------KSITEATELSGRLTQSKD------SITIR 171
++C+ Q VW + S + +GR T D + +
Sbjct: 16 LVQCHYR--LQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMV 73
Query: 172 KTTVDDAGQYSCRLIDPKSTNTT 194
+DAG+Y C +D
Sbjct: 74 TLQEEDAGEYGCM-VDGARGPQI 95
>1vrm_A Hypothetical protein TM1553; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: UNL; 1.58A {Thermotoga maritima} SCOP:
d.96.2.1
Length = 325
Score = 29.5 bits (67), Expect = 1.4
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 23/67 (34%)
Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY------ 281
++G W IG + + P + + +A G+Y
Sbjct: 196 RIIGPKFGKYPWVIG----------V---KDPRGDDVIDYIYLKSGAVATSGDYERYFVV 242
Query: 282 ----YCH 284
Y H
Sbjct: 243 DGVRYHH 249
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 28.4 bits (64), Expect = 1.4
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKG----NKSITEATEL-SGRLTQSKDS---------ITIR 171
L C +TS P I WY+G I T R+T D+ I I
Sbjct: 26 VLNCTLTSLLPVGP--IKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRIS 83
Query: 172 KTTVDDAGQYSC 183
T +DAG Y C
Sbjct: 84 NVTPEDAGTYYC 95
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.0 bits (63), Expect = 1.4
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 126 TLKCNVTSPPPGDDYQIVWY--KGNKSITEATELSGRLTQSKD------SITIRKTTVDD 177
T+ C + D WY K + + + GR +++ D S+TIR V+D
Sbjct: 19 TINCVLRDTACALDS-TNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVED 77
Query: 178 AGQYSC 183
+G Y C
Sbjct: 78 SGTYKC 83
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 27.6 bits (61), Expect = 1.4
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 18/82 (21%)
Query: 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT 174
K + E + CN + I W +G + L K
Sbjct: 2 KIPIEELEDRVFVNCNTS---------ITWVEGTVGTLLSDITRLDLG---------KRI 43
Query: 175 VDDAGQYSCRLIDPKSTNTTPL 196
+D G Y C D + +
Sbjct: 44 LDPRGIYRCNGTDIYKDKESTV 65
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 28.7 bits (64), Expect = 1.8
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 216 TVIEGEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
++ ++ C+VV + W + N +Q + ++ S L I
Sbjct: 22 VLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQ 81
Query: 272 EATMADRGNYYC 283
+ C
Sbjct: 82 HQDWMSGKEFKC 93
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 28.3 bits (63), Expect = 2.8
Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 18/86 (20%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-------------RIGNDTYFRS--QGRIKLSE 257
TL G L LEC V G+ P + W S + S
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASR 68
Query: 258 HPEKGTANSVLQIDEATMADRGNYYC 283
+L + ++D G Y C
Sbjct: 69 ---PQDRQFILSSKKLLLSDSGFYLC 91
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.2 bits (63), Expect = 3.1
Identities = 36/205 (17%), Positives = 54/205 (26%), Gaps = 54/205 (26%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK-------------GNKSITEATELSGRLTQSKD-----S 167
TL CN T+ + + WY+ TE ++ S+ S
Sbjct: 19 TLSCNQTN----NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFS 74
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET------------- 214
+ + T Y C D TN + + +A +
Sbjct: 75 LILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP 134
Query: 215 --LTVIEGEKLRLECLVVGSPPPTVEW----------RIGNDTYFRSQGRIK----LSEH 258
LTV EGE L C S W + S K +
Sbjct: 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLI---SILSVSDKKEDGRFTIF 191
Query: 259 PEKGTANSVLQIDEATMADRGNYYC 283
K L I ++ D Y+C
Sbjct: 192 FNKREKKLSLHIADSQPGDSATYFC 216
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.3 bits (61), Expect = 3.1
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 21/89 (23%)
Query: 126 TLKCN-VTSPPPGDDYQIVWYK-----------GNKSITEATELSGRLT---QSKD---S 167
T+ C T Y + WYK S + G + Q
Sbjct: 19 TMDCVYETQDS---SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
+ I T ++D+ Y C + + L
Sbjct: 76 LIITATQIEDSAVYFCAMRGDYGGSGNKL 104
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 27.6 bits (62), Expect = 3.3
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKS-----ITEATELSGRLTQSKD---------SITIR 171
TL+C +TS P I+W++G + + R+T + SI+I
Sbjct: 27 TLRCAMTSLIP--VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISIS 84
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPL 196
T DAG Y C S +
Sbjct: 85 NITPADAGTYYCVKFRKGSPDDVEF 109
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 28.1 bits (63), Expect = 3.3
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 27/110 (24%)
Query: 197 AQADFDVIMKPTAKLVET-----LTVIEGEKLRLECLVVGSPPPTV-------------- 237
A+ D+ + +V T L V G++ + C S +
Sbjct: 2 ARPDYKDDDDKASDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQ 61
Query: 238 --EWRIGNDTYFRS--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
+ I + S R S GT + L+I+ D G Y+C
Sbjct: 62 SPKVLIYKVSNRVSGVPDRFSGSG---SGTDFT-LKINRVEAEDLGVYFC 107
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural
genomics, PSI, protein structure initiative; 2.80A {Homo
sapiens} SCOP: b.80.5.1
Length = 157
Score = 27.6 bits (61), Expect = 3.3
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 125 FTLKC---NVTSPPPGDDY-------QIV-WYKGNKSITEATELSG 159
+ K NV P G D+ Q + G K +T TE++G
Sbjct: 112 VSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 157
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 27.4 bits (60), Expect = 3.6
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 18/78 (23%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELS------------------GRLTQSKDS 167
L C + +++ +KG S E + G+L +
Sbjct: 21 NLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVT 80
Query: 168 ITIRKTTVDDAGQYSCRL 185
++ V+ Y C++
Sbjct: 81 FYLQNLYVNQTDIYFCKI 98
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.3 bits (61), Expect = 3.7
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 21/89 (23%)
Query: 126 TLKCN-VTSPPPGDDYQIVWYK-----------GNKSITEATELSGRLTQSKD------S 167
T+ C T Y + WYK S + G + +
Sbjct: 19 TMDCVYETQDS---SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
+ I T ++D+ Y C + + L
Sbjct: 76 LIITATQIEDSAVYFCAMRGDYGGSGNKL 104
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 28.0 bits (63), Expect = 4.2
Identities = 44/188 (23%), Positives = 61/188 (32%), Gaps = 42/188 (22%)
Query: 144 WYKGNKSITEATELSGRLTQSKD-------SITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
W S SKD ++T+ K + Y+C ST +P+
Sbjct: 152 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST--SPI 209
Query: 197 AQADFDVIMKPTAKLVET---LTVIEGEKLRLECLVVGS-------------PPPTVEWR 240
++ LVE+ L V G L+L C G P +EW
Sbjct: 210 VKSFNRNE--CEVMLVESGGGL-VKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWV 266
Query: 241 I-----GNDTYFRS--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
G TY+ +GR +S K T LQ+ AD YYC R
Sbjct: 267 ATISSGGTYTYYPDSVKGRFTISRDNAKNTL--YLQMSSLRSADTAMYYC-----VRRED 319
Query: 294 QPNEAFVY 301
+E F Y
Sbjct: 320 GGDEGFAY 327
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 27.7 bits (61), Expect = 4.3
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW--------------RIGNDTYFRSQGRIKLSEH 258
+TV EG L+L C S P + W D + +
Sbjct: 17 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFS 76
Query: 259 PEKGTANSVLQIDEATMADRGNYYCH 284
K ++ L+ +D Y+C
Sbjct: 77 --KSDSSFHLRKASVHWSDSAVYFCA 100
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 27.6 bits (61), Expect = 4.4
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 126 TLKCNVTSPPPGDDYQIVWYK--GNKSIT--------EATELSGRLTQSKD----SITIR 171
L CN ++ G DY I WY+ ++ L ++D ++ +
Sbjct: 18 HLPCNHSTIS-GTDY-IHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILH 75
Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPL 196
+ T+ DA Y C L T+ L
Sbjct: 76 RATLRDAAVYYCILPLAGGTSYGKL 100
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 27.3 bits (60), Expect = 5.5
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-------------RIGNDTYFRSQGRIKLSEHP 259
L+V EGE L L C S ++W I + ++ GR L+
Sbjct: 8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGR--LNASL 65
Query: 260 EKGTANSVLQIDEATMADRGNYYC 283
+K + S L I + D Y C
Sbjct: 66 DKSSGRSTLYIAASQPGDSATYLC 89
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 27.4 bits (60), Expect = 6.3
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-------------RIGNDTYFRSQGRIKLSEHP 259
++L V +GE L+C +P + W + + S GR S
Sbjct: 9 QSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGR--YSATL 66
Query: 260 EKGTANSVLQIDEATMADRGNYYC 283
+K +S L I + D Y+C
Sbjct: 67 DKDAKHSTLHITATLLDDTATYFC 90
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 26.9 bits (59), Expect = 7.2
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-------------RIGNDTYFRSQGRIKLSEHP 259
++L ++EG+ L+C SP + W + +S GR +
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGR--YTATL 68
Query: 260 EKGTANSVLQIDEATMADRGNYYC 283
+ T S L I + ++D +Y C
Sbjct: 69 DADTKQSSLHITASQLSDSASYIC 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,853,437
Number of extensions: 279626
Number of successful extensions: 2007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 555
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)