BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15236
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02372|NDUB8_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Bos taurus GN=NDUFB8 PE=1 SV=1
Length = 186
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 11 KSLGKVVSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFAT 70
K+ VV L RTA T D LPG PKT EER AAKKYN+ E+YE PDDG
Sbjct: 16 KAARNVVPL---GARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGTGY 72
Query: 71 GDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPL 103
GDYP LP RDP+Y WD+P R N+GEP+
Sbjct: 73 GDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPM 105
>sp|P0CB85|NDUB8_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pongo abelii GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 23 SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
RTA T D PG P+T EER AAKKYN+ E+YE PDDG GDYP LP
Sbjct: 25 GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84
Query: 83 SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
RDP+Y WD P R N+GEP+ H+ + FN V+ + + + G +
Sbjct: 85 ERDPWYSWDQPDLRLNWGEPM-------HWHLDMFNRNRVDTSPILVSWNVMCMQLFGFL 137
Query: 142 SLVLKYFCWEKRYY 155
+ ++ + CW Y
Sbjct: 138 AFMI-FMCWVGEVY 150
>sp|Q9D6J5|NDUB8_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Mus musculus GN=Ndufb8 PE=1 SV=1
Length = 186
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 11 KSLGKVVSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFAT 70
++ VV L+ R AF T D LPG P+T EER AAKKYN+ E+YE PDDG
Sbjct: 16 RTTRGVVPLE---ARRAFHMTKDMLPGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGY 72
Query: 71 GDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
GDYP LP+ RDP+Y WD+ R N+GEP+ D +
Sbjct: 73 GDYPMLPNRSQHERDPWYQWDHSELRMNWGEPIHWDLDM 111
>sp|Q0MQE7|NDUB8_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pan troglodytes GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 23 SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
RTA T D PG P+T EER AAKKYN+ E+YE PDDG GDYP LP
Sbjct: 25 GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84
Query: 83 SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
RDP+Y WD P R N+GEP+ H+ + +N V+ + + + G +
Sbjct: 85 ERDPWYSWDQPGLRLNWGEPM-------HWHLDMYNRNRVDTSPTPLSWHVMCMQLFGFL 137
Query: 142 SLVLKYFCW 150
+ ++ + CW
Sbjct: 138 AFMI-FMCW 145
>sp|Q0MQE6|NDUB8_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFB8 PE=2
SV=1
Length = 186
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 17/153 (11%)
Query: 6 VLSQVKSLGKVVSLQQNS-------VRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPE 58
+++ + LG V LQ+ S RTA T D PG P+T EER AAKKYN+ E
Sbjct: 2 AVARARVLG-VQWLQRASRNVMPLGARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVE 60
Query: 59 EYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FN 117
+YE PDDG GDYP LP RDP+Y WD P R N+GEP+ H+ + +N
Sbjct: 61 DYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPM-------HWHLDMYN 113
Query: 118 EQPVNQRISVWEQLAYMVGILGTISLVLKYFCW 150
V+ + + + G ++ ++ + CW
Sbjct: 114 RNRVDTSPTPISWHVMCMQLFGFLAFMI-FMCW 145
>sp|P0CB86|NDUB8_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pongo pygmaeus GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 23 SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
RTA T D PG P+T EER AAKKYN+ E+YE PDDG GDYP LP
Sbjct: 25 GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84
Query: 83 SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
RDP+Y WD P R N+GEP+ H+ + FN V+ + + G +
Sbjct: 85 ERDPWYSWDQPDLRLNWGEPM-------HWHLDMFNRNRVDTSPIPVSWNVMCMQLFGFL 137
Query: 142 SLVLKYFCWEKRYY 155
+ ++ + CW Y
Sbjct: 138 AFMI-FMCWVGEVY 150
>sp|O95169|NDUB8_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Homo sapiens GN=NDUFB8 PE=1 SV=1
Length = 186
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 49/81 (60%)
Query: 23 SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
RTA T D PG P+T EER AAKKYN+ E+YE PDDG GDYP LP
Sbjct: 25 GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84
Query: 83 SRDPFYPWDYPMFRTNYGEPL 103
RDP+Y WD P R N+GEP+
Sbjct: 85 ERDPWYSWDQPGLRLNWGEPM 105
>sp|Q2NSC4|SYE_SODGM Glutamate--tRNA ligase OS=Sodalis glossinidius (strain morsitans)
GN=gltX PE=3 SV=1
Length = 473
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 98 NYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYP 157
+Y LP D+ +H + +Q ++ R QLA +V +LG LK RY+Y
Sbjct: 309 HYINHLPADYVATHLVLHIEQQGIDTRTG--PQLAALVKLLGERCKTLKEIAASCRYFYE 366
Query: 158 KF 159
F
Sbjct: 367 DF 368
>sp|A8Y236|GLT10_CAEBR Putative polypeptide N-acetylgalactosaminyltransferase 10
OS=Caenorhabditis briggsae GN=gly-10 PE=3 SV=2
Length = 629
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 58 EEYEVQPDDGFATG------DYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAIS 110
E YE++P D A G +Y LP T D +P P+D P+ Y FAIS
Sbjct: 294 ETYEIRPQDEGARGSFDWAFNYKRLPLTKKDRENPTKPFDSPVMAGGY-------FAIS 345
>sp|Q9P8P2|PLB1_CRYNH Phospholipase B OS=Cryptococcus neoformans var. grubii serotype A
(strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
GN=PLB1 PE=1 SV=2
Length = 637
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 34 WLPGERPKTEEERRKAAKKYN----LLPEEYEVQPDDGFATGDYPHLPHTHYDSRD---- 85
W G +T ER K ++ L+PE V +GF G Y P T + D
Sbjct: 431 WPNGTALRTTYERAKVLAEHENTRVLMPE---VPSMNGFVNGGYNSRP-TFFGCNDTTTP 486
Query: 86 -----PFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVW 128
P YPW + + Y ND A G +N + W
Sbjct: 487 LIIYVPSYPWSFAANTSTYQLSYENDEANEMLLNGMRSLTLNHSVPTW 534
>sp|Q04544|POLG_SOUV3 Genome polyprotein OS=Southampton virus (strain GI/Human/United
Kingdom/Southampton/1991) GN=ORF1 PE=1 SV=2
Length = 1788
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 111 HYGMGFNEQPVNQRISVWEQLAYMV 135
YGMG++++P++Q + WE+L V
Sbjct: 87 QYGMGWSDRPIDQNVKSWEELDTTV 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,487,589
Number of Sequences: 539616
Number of extensions: 3543825
Number of successful extensions: 7021
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7012
Number of HSP's gapped (non-prelim): 18
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)