Query psy15236
Match_columns 176
No_of_seqs 125 out of 148
Neff 4.8
Searched_HMMs 29240
Date Sat Aug 17 00:47:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1du6_A PBX1, homeobox protein 40.6 19 0.00065 22.9 2.6 21 36-57 27-47 (64)
2 1k61_A Mating-type protein alp 40.3 21 0.00073 22.3 2.7 20 37-57 23-42 (60)
3 1x2n_A Homeobox protein pknox1 39.4 20 0.0007 23.4 2.6 20 37-57 32-51 (73)
4 2kr6_A Presenilin-1; protease, 33.3 30 0.001 27.9 3.1 36 126-162 112-147 (176)
5 1puf_B PRE-B-cell leukemia tra 32.6 30 0.001 22.6 2.6 21 36-57 25-45 (73)
6 2dmn_A Homeobox protein TGIF2L 31.8 31 0.0011 23.4 2.6 20 37-57 32-51 (83)
7 1b72_B Protein (PBX1); homeodo 28.7 37 0.0013 22.8 2.6 21 36-57 25-45 (87)
8 1qzm_A ATP-dependent protease 28.5 27 0.00093 25.0 1.9 13 42-54 4-16 (94)
9 1mnm_C Protein (MAT alpha-2 tr 26.5 44 0.0015 22.6 2.6 20 37-57 52-71 (87)
10 3k2a_A Homeobox protein MEIS2; 26.3 46 0.0016 21.6 2.6 21 36-57 22-42 (67)
11 1akh_A Protein (mating-type pr 26.2 44 0.0015 20.8 2.5 19 38-57 28-46 (61)
12 3a03_A T-cell leukemia homeobo 25.9 50 0.0017 20.4 2.7 20 37-57 19-38 (56)
13 3a02_A Homeobox protein arista 22.8 60 0.0021 20.2 2.6 20 37-57 21-40 (60)
14 2lx0_A Membrane fusion protein 22.8 1E+02 0.0034 17.9 3.2 21 128-149 6-26 (32)
15 3kdp_B Sodium/potassium-transp 22.7 1E+02 0.0035 26.1 4.7 27 123-149 11-40 (286)
16 1le8_B Mating-type protein alp 22.0 61 0.0021 21.8 2.6 20 37-57 27-46 (83)
17 2dmu_A Homeobox protein goosec 21.7 61 0.0021 20.8 2.5 20 37-57 29-48 (70)
18 2k40_A Homeobox expressed in E 21.3 68 0.0023 20.4 2.7 20 37-57 23-42 (67)
19 2v1o_A Cytosolic acyl coenzyme 21.1 62 0.0021 23.0 2.7 20 34-53 121-140 (151)
20 1bw5_A ISL-1HD, insulin gene e 20.5 73 0.0025 20.2 2.7 20 37-57 25-44 (66)
21 2hdd_A Protein (engrailed home 20.2 75 0.0026 19.8 2.7 20 37-57 25-44 (61)
No 1
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=40.63 E-value=19 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy15236 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 P~~yP~t~eer~aaAkKY~~~~ 57 (176)
=.+|| |.+||..+|++-||..
T Consensus 27 ~~~yp-~~~~r~~La~~~~L~~ 47 (64)
T 1du6_A 27 SNPYP-SEEAKEELAKKCGITV 47 (64)
T ss_dssp TSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCC-CHHHHHHHHHHHCcCH
Confidence 36788 7889999999999853
No 2
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=40.30 E-value=21 Score=22.34 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.+||..+|++-||..
T Consensus 23 ~~yp-~~~~r~~La~~~gl~~ 42 (60)
T 1k61_A 23 NPYL-DTKGLENLMKNTSLSR 42 (60)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 6787 7788999999999853
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.42 E-value=20 Score=23.42 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| |.+||..+|++-||..
T Consensus 32 ~~yp-~~~~r~~La~~~~L~~ 51 (73)
T 1x2n_A 32 HPYP-TEDEKKQIAAQTNLTL 51 (73)
T ss_dssp SCCC-CHHHHHHHHHHHTCCH
T ss_pred CCCC-CHHHHHHHHHHHCcCH
Confidence 6787 8899999999999854
No 4
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=33.30 E-value=30 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC
Q psy15236 126 SVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSP 162 (176)
Q Consensus 126 s~~~~l~~~~g~l~g~~~~~~~l~~~y~~~~Pv~prq 162 (176)
+|...+..|+++++|+.+.+.+|. .++..-|+.|-.
T Consensus 112 d~~t~~ac~vaIL~GL~~TL~lLa-~~~~aLPALPiS 147 (176)
T 2kr6_A 112 DWNTTIACFVAILIGLCLTLLLLA-IFKKALPALPIS 147 (176)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHH-HHTCSCSSSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCcHH
Confidence 566778888999989777666666 666667777644
No 5
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=32.57 E-value=30 Score=22.58 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy15236 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 P~~yP~t~eer~aaAkKY~~~~ 57 (176)
=.+|| |.+||..+|++-||..
T Consensus 25 ~~~yP-~~~~r~~La~~~~L~~ 45 (73)
T 1puf_B 25 SNPYP-SEEAKEELAKKCGITV 45 (73)
T ss_dssp TSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCc-CHHHHHHHHHHHCcCH
Confidence 36787 7889999999999854
No 6
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=31.79 E-value=31 Score=23.37 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.||| |++||..+|++-||..
T Consensus 32 ~pYP-s~~~r~~LA~~~gLs~ 51 (83)
T 2dmn_A 32 KAYP-SEEEKQMLSEKTNLSL 51 (83)
T ss_dssp TCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCC-CHHHHHHHHHHHCcCH
Confidence 5776 7789999999999853
No 7
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=28.73 E-value=37 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy15236 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 P~~yP~t~eer~aaAkKY~~~~ 57 (176)
=.+|| |.+||..+|++-||..
T Consensus 25 ~~~yp-~~~~r~~La~~~~l~~ 45 (87)
T 1b72_B 25 SNPYP-SEEAKEELAKKCGITV 45 (87)
T ss_dssp TSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCC-CHHHHHHHHHHHCcCH
Confidence 36787 7889999999999853
No 8
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=28.49 E-value=27 Score=25.00 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHcC
Q psy15236 42 TEEERRKAAKKYN 54 (176)
Q Consensus 42 t~eer~aaAkKY~ 54 (176)
|++|+..+|++|=
T Consensus 4 t~~EK~~IAk~~L 16 (94)
T 1qzm_A 4 TEDEKLNIAKRHL 16 (94)
T ss_dssp CHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhc
Confidence 8899999999873
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=26.49 E-value=44 Score=22.61 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| |.+||..+|++-||..
T Consensus 52 ~~yP-~~~~r~~La~~~gL~~ 71 (87)
T 1mnm_C 52 NPYL-DTKGLENLMKNTSLSR 71 (87)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 5787 7789999999999853
No 10
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=26.34 E-value=46 Score=21.62 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy15236 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 P~~yP~t~eer~aaAkKY~~~~ 57 (176)
=.||| |.+||..+|++-||..
T Consensus 22 ~~pyp-~~~~r~~La~~~~l~~ 42 (67)
T 3k2a_A 22 THPYP-SEEQKKQLAQDTGLTI 42 (67)
T ss_dssp TSCCC-CHHHHHHHHHHHTCCH
T ss_pred cCCCC-CHHHHHHHHHHhCcCH
Confidence 46787 6688999999999753
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=26.23 E-value=44 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHcCCCC
Q psy15236 38 ERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 38 ~yP~t~eer~aaAkKY~~~~ 57 (176)
+|| +.+||..+|++-||..
T Consensus 28 ~yp-~~~~r~~La~~~~l~~ 46 (61)
T 1akh_A 28 QSL-NSKEKEEVAKKCGITP 46 (61)
T ss_dssp SSC-CHHHHHHHHHHHTSCH
T ss_pred CCc-CHHHHHHHHHHHCcCH
Confidence 677 6788999999999853
No 12
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=25.92 E-value=50 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||..
T Consensus 19 ~~yp-~~~~r~~LA~~l~l~~ 38 (56)
T 3a03_A 19 QKYL-ASAERAALAKALRMTD 38 (56)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCc-CHHHHHHHHHHhCcCH
Confidence 4676 6788999999999853
No 13
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=22.81 E-value=60 Score=20.18 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||..
T Consensus 21 ~~yp-~~~~r~~La~~l~l~~ 40 (60)
T 3a02_A 21 THYP-DVFTREELAMKIGLTE 40 (60)
T ss_dssp CSSC-CHHHHHHHHHHHTSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4677 6788999999999753
No 14
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.78 E-value=1e+02 Score=17.88 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy15236 128 WEQLAYMVGILGTISLVLKYFC 149 (176)
Q Consensus 128 ~~~l~~~~g~l~g~~~~~~~l~ 149 (176)
|...+.+.+.+ .|+++.||+-
T Consensus 6 weviaglvall-tflafgfwlf 26 (32)
T 2lx0_A 6 WEVIAGLVALL-TFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 33344444444 6666666654
No 15
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=22.69 E-value=1e+02 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=16.8
Q ss_pred cccCHHHHHH---HHHHHHHHHHHHHHHhh
Q psy15236 123 QRISVWEQLA---YMVGILGTISLVLKYFC 149 (176)
Q Consensus 123 ~~~s~~~~l~---~~~g~l~g~~~~~~~l~ 149 (176)
|.-||.+.++ .|-++|+||+++++|+.
T Consensus 11 T~~sW~~IllFYliFY~~La~lFa~~m~v~ 40 (286)
T 3kdp_B 11 TGGSWFKILLFYVIFYGCLAGIFIGTIQVM 40 (286)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567875544 35566777777666653
No 16
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=21.97 E-value=61 Score=21.77 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| |.+||..+|++-||..
T Consensus 27 ~~yP-~~~~r~~La~~~gLt~ 46 (83)
T 1le8_B 27 NPYL-DTKGLENLMKNTSLSR 46 (83)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCCCH
Confidence 5787 6889999999999854
No 17
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.69 E-value=61 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.+||..+|++-||..
T Consensus 29 ~~yp-~~~~r~~LA~~l~l~~ 48 (70)
T 2dmu_A 29 TKYP-DVGTREQLARKVHLRE 48 (70)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHHCCCH
Confidence 4677 6788999999999854
No 18
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=21.31 E-value=68 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||..
T Consensus 23 ~~yp-~~~~r~~La~~l~l~~ 42 (67)
T 2k40_A 23 NCYP-GIDILEDLAQKLNLEL 42 (67)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHHCcCH
Confidence 5787 6788999999999753
No 19
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication, ACOT7, macrophage; HET: COA; 1.78A {Mus musculus}
Probab=21.07 E-value=62 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=14.9
Q ss_pred CCCCCCCCCHHHHHHHHHHc
Q psy15236 34 WLPGERPKTEEERRKAAKKY 53 (176)
Q Consensus 34 ~~P~~yP~t~eer~aaAkKY 53 (176)
=.|...|+|++|++.+.++|
T Consensus 121 ~iP~~~~~t~~e~~~~~~r~ 140 (151)
T 2v1o_A 121 EVPPIVYLRQEQEEEGRKRY 140 (151)
T ss_dssp CCCCCCCSSHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 45677888999987666655
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.45 E-value=73 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.+||..+|++-||..
T Consensus 25 ~~yp-~~~~r~~La~~l~l~~ 44 (66)
T 1bw5_A 25 NPRP-DALMKEQLVEMTGLSP 44 (66)
T ss_dssp CSCC-CHHHHHHHHHHHTSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4687 6678999999999753
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=20.20 E-value=75 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||..
T Consensus 25 ~~yp-~~~~r~~La~~l~l~~ 44 (61)
T 2hdd_A 25 NRYL-TERRRQQLSSELGLNE 44 (61)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHHCcCH
Confidence 4677 6788999999999853
Done!