Query psy15236
Match_columns 176
No_of_seqs 125 out of 148
Neff 4.8
Searched_HMMs 13730
Date Sat Aug 17 00:48:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15236.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15236hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1le8a_ a.4.1.1 (A:) Mating ty 45.4 6.3 0.00046 23.5 2.3 20 37-57 19-38 (53)
2 d1jgga_ a.4.1.1 (A:) Even-skip 39.3 8.2 0.0006 23.3 2.2 20 37-57 21-40 (57)
3 d1x2ma1 a.4.1.1 (A:8-59) Lag1 34.2 14 0.001 21.9 2.6 20 37-57 16-35 (52)
4 d1fjla_ a.4.1.1 (A:) Paired pr 27.9 20 0.0014 22.0 2.7 20 37-57 24-43 (65)
5 d1wi3a_ a.4.1.1 (A:) DNA-bindi 24.3 22 0.0016 22.0 2.4 20 37-57 30-49 (71)
6 d1lfba_ a.4.1.1 (A:) Hepatocyt 22.1 25 0.0018 22.5 2.4 20 35-55 17-36 (78)
7 d1qzma_ c.37.1.20 (A:) ATPase 21.9 20 0.0015 23.6 1.9 13 42-54 4-16 (94)
8 d1lc5a_ c.67.1.1 (A:) L-threon 21.4 28 0.002 26.4 2.9 18 41-58 58-75 (355)
9 d1pbya1 a.3.1.7 (A:1-85) Quino 21.2 33 0.0024 22.2 2.9 23 40-62 50-76 (85)
10 d1k61a_ a.4.1.1 (A:) mat alpha 19.5 24 0.0017 21.2 1.7 20 37-57 23-42 (60)
No 1
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.37 E-value=6.3 Score=23.53 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.+||..+|++-||.+
T Consensus 19 ~~~P-~~~~~~~LA~~lgl~~ 38 (53)
T d1le8a_ 19 KQSL-NSKEKEEVAKKCGITP 38 (53)
T ss_dssp CSCC-CHHHHHHHHHHTTSCH
T ss_pred CCCC-CHHHHHHHHHHHCCCH
Confidence 4687 7899999999999854
No 2
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=39.34 E-value=8.2 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||.+
T Consensus 21 ~~yp-~~~~r~~LA~~lgl~~ 40 (57)
T d1jgga_ 21 ENYV-SRPRRCELAAQLNLPE 40 (57)
T ss_dssp CSCC-CHHHHHHHHHHHTSCH
T ss_pred CCCC-CHHHHHHHHHHhCCCh
Confidence 5677 7899999999999864
No 3
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.21 E-value=14 Score=21.91 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.++|..+|++-||..
T Consensus 16 ~~~P-~~~~~~~LA~~~~ls~ 35 (52)
T d1x2ma1 16 TKHP-DEKRLEGLSKQLDWDV 35 (52)
T ss_dssp CSSC-CHHHHHHHHHHHCSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4677 6799999999999854
No 4
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=27.91 E-value=20 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| |.+||..+|++-||..
T Consensus 24 n~yP-s~~~r~~LA~~lgl~~ 43 (65)
T d1fjla_ 24 TQYP-DIYTREELAQRTNLTE 43 (65)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-ChHHHHHHHHHhCCCH
Confidence 4687 7789999999999854
No 5
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.26 E-value=22 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.+|| +.+||..+|++-||.+
T Consensus 30 ~~~P-~~~~~~~La~~lgl~~ 49 (71)
T d1wi3a_ 30 GLYP-DQEAIHTLSAQLDLPK 49 (71)
T ss_dssp CSCC-CHHHHHHHHHHSCCCH
T ss_pred cCCC-CHHHHHHHHHHhCCCH
Confidence 4566 5788999999999854
No 6
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=22.09 E-value=25 Score=22.53 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.6
Q ss_pred CCCCCCCCHHHHHHHHHHcCC
Q psy15236 35 LPGERPKTEEERRKAAKKYNL 55 (176)
Q Consensus 35 ~P~~yP~t~eer~aaAkKY~~ 55 (176)
.=.+|| |.++|+++|++-|+
T Consensus 17 ~~n~yP-s~~~Re~LA~~ln~ 36 (78)
T d1lfba_ 17 ERQKNP-SKEERETLVEECNR 36 (78)
T ss_dssp TTCSSC-CHHHHHHHHHHHHH
T ss_pred HhCCCC-CHHHHHHHHHHhch
Confidence 336888 89999999999873
No 7
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}
Probab=21.86 E-value=20 Score=23.57 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHcC
Q psy15236 42 TEEERRKAAKKYN 54 (176)
Q Consensus 42 t~eer~aaAkKY~ 54 (176)
|.+|+..+|++|=
T Consensus 4 t~~EK~~Iak~yL 16 (94)
T d1qzma_ 4 TEDEKLNIAKRHL 16 (94)
T ss_dssp CHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHh
Confidence 7788888888773
No 8
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}
Probab=21.36 E-value=28 Score=26.38 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHcCCCCC
Q psy15236 41 KTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 41 ~t~eer~aaAkKY~~~~e 58 (176)
...+=|+++|++||+.++
T Consensus 58 ~~~~Lr~aia~~~~v~~~ 75 (355)
T d1lc5a_ 58 DYFHLHQALARHHQVPAS 75 (355)
T ss_dssp TCHHHHHHHHHHHTSCGG
T ss_pred ChHHHHHHHHHHhCCCHH
Confidence 347889999999997654
No 9
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=21.18 E-value=33 Score=22.20 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=18.3
Q ss_pred CCCHHHHHHH----HHHcCCCCCCCcc
Q psy15236 40 PKTEEERRKA----AKKYNLLPEEYEV 62 (176)
Q Consensus 40 P~t~eer~aa----AkKY~~~~edY~p 62 (176)
|-|++|+.++ |+.||+.|++-+|
T Consensus 50 ~l~~~e~~~Iv~YLa~~yG~~p~e~~~ 76 (85)
T d1pbya1 50 ALEPEERAAIVRHLSDTRGLSLAETEE 76 (85)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCSGGGTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCcccccc
Confidence 4588888876 7899999988654
No 10
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.51 E-value=24 Score=21.20 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy15236 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 ~~yP~t~eer~aaAkKY~~~~ 57 (176)
.||| |++||..+|++-||.+
T Consensus 23 ~pyP-s~~e~~~La~~~gL~~ 42 (60)
T d1k61a_ 23 NPYL-DTKGLENLMKNTSLSR 42 (60)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4665 6789999999999854
Done!