BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1524
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 35/155 (22%)
Query: 156 YKTDVQLPSKLTSLAMTCST--NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y+ + + +L +T +T ++FPAM+ LSIS AFILVY+I S EE++ I +
Sbjct: 40 YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ 99
Query: 214 IFETKAST-AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I E K ++PI++VGNK D +P +
Sbjct: 100 ICEIKGDVESIPIMLVGNKCD--------------------------------ESPSREV 127
Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
+ + W+ F+E SAK N N+ ++F+ELL
Sbjct: 128 QSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 351 WENGFVEASAKDNTNITQVFKELL 374
W+ F+E SAK N N+ ++F+ELL
Sbjct: 139 WKCAFMETSAKLNHNVKELFQELL 162
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 37/173 (21%)
Query: 155 AYKTDVQLPSKLTSLAMTCST--NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
Y+ + + +L +T +T ++FPAM+ LSIS AFILV+++ S EE+ I
Sbjct: 44 TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYK 103
Query: 213 HIFETKASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271
I + K S +P+++VGNK D + R+VD
Sbjct: 104 LIVQIKGSVEDIPVMLVGNKCD--ETQREVDTREA------------------------- 136
Query: 272 PYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRR 324
++V Q +W+ F+E SAK N N+ ++F+ELL + + N+S + +R
Sbjct: 137 -----QAVAQ-EWKCAFMETSAKMNYNVKELFQELLT-LETRRNMSLNIDGKR 182
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 341 DTTES-VVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRR 391
DT E+ V +W+ F+E SAK N N+ ++F+ELL + + N+S + +R
Sbjct: 132 DTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT-LETRRNMSLNIDGKR 182
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 34/156 (21%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y+ ++++ S + L + T T +F +MR L I + FILVY++ + SF++I+ +RD
Sbjct: 40 YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99
Query: 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
I K VP+++VGNK DL E G
Sbjct: 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEG---------------------------- 131
Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ 309
+ +W F+E SAK T + ++F E++ Q
Sbjct: 132 ----RALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
S++ +F+ TF KY TIE+ + ++ ++ L+ILDT+G +
Sbjct: 17 SALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
+Y+ V++ ++ L + T T +F AMR L + + F LVY+I ++F +++ +R+
Sbjct: 41 SYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 100
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I K + VP+++VGNK DL DE V Q Q
Sbjct: 101 QILRVKDTDDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 139
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
W N F+E+SAK N+ ++F +L+ Q
Sbjct: 140 -----------WNNCAFLESSAKSKINVNEIFYDLVRQ 166
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
+Y+ V++ ++ L + T T +F AMR L + + F LVY+I ++F +++ +R+
Sbjct: 39 SYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I K + VP+++VGNK DL DE V Q Q
Sbjct: 99 QILRVKDTDDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
W N F+E+SAK N+ ++F +L+ Q
Sbjct: 138 -----------WNNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
+Y+ V++ + L + T T +F AMR L + + F LVY+I ++F +++ +R+
Sbjct: 39 SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I K + VP+++VGNK DL DE V Q Q
Sbjct: 99 QILRVKDTEDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
W N F+E+SAK N+ ++F +L+ Q
Sbjct: 138 -----------WCNCAFLESSAKSKINVNEIFYDLVRQ 164
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ +F+ F KY TIE+ + + ++ L+ILDT+G + ++
Sbjct: 17 SALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
+Y+ V++ + L + T T +F AMR L + + F LVY+I ++F +++ +R+
Sbjct: 39 SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I K + VP+++VGNK DL DE V Q Q
Sbjct: 99 QILRVKDTEDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
W N F+E+SAK N+ ++F +L+ Q
Sbjct: 138 -----------WCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
SDLA E+RQ
Sbjct: 118 SDLAARTVESRQ 129
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F + TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
SDLA E+RQ
Sbjct: 118 SDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|3U5C|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 105
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 10/64 (15%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
SL SKG+V QF+W++YY+ +T +G+E LR LN+P+ IVP T ++ R
Sbjct: 48 SLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQE----------RNP 97
Query: 465 TQRP 468
TQRP
Sbjct: 98 TQRP 101
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF AMR + + + F+LV+++ D SFEEI + I K P++++GNK
Sbjct: 60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
+DL D RQV G A Q+ T ++EA
Sbjct: 120 ADL-DHQRQVTQEEG-----------QQLARQLKVT--------------------YMEA 147
Query: 292 SAKDNTNITQVFKELL 307
SAK N+ Q F EL+
Sbjct: 148 SAKIRMNVDQAFHELV 163
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
S++ +F+ + F Y TIE+ + + ++ +LDILDT+G++
Sbjct: 19 SALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 64
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T + E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 XDLAARTVESRQ 129
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+ ++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMR 68
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 22 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 81
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 82 GFLCVFAINNTKSF 95
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 22 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 81
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 82 GFLCVFAINNTKSF 95
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G + ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMR 68
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 58 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 117
Query: 226 VVVGNKSDLA 235
V+VGNK DLA
Sbjct: 118 VLVGNKCDLA 127
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y +IE+ + + ++G LDILDT+G++ +G+
Sbjct: 23 SALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 82
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 83 GFLCVFAINNTKSF 96
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T + E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 XDLAARTVESRQ 129
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+ ++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMR 68
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAGRTVESRQ 129
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
+Y+ V + ++ L + T E+ AMR + + + F+ V+AI++ SFE+I R+
Sbjct: 39 SYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLAD---ENRQ 240
I K S VP+V+VGNK DLA E+RQ
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQ 129
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMR 68
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 226 VVVGNKSDLA 235
V+VGNK DLA
Sbjct: 112 VLVGNKCDLA 121
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 65 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 124
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 125 CDLAARTVESRQ 136
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 24 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 75
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 18 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 78 GFLCVFAINNTKSF 91
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 18 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 78 GFLCVFAINNTKSF 91
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 18 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 78 GFLCVFAINNTKSF 91
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
S++ + + N F +Y TIE+ + + ++G LDILDT+G
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 57 LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G + +G+
Sbjct: 22 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGE 81
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 82 GFLCVFAINNTKSF 95
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F ++ TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMR 68
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 43/169 (25%)
Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221
+P++L L T EF AMR + + F+LV+AI+D SF E+ + I K
Sbjct: 55 IPARLDILD-TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD 113
Query: 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281
P+V+VGNK+DL + QVP + S
Sbjct: 114 DFPVVLVGNKADLESQR-------------------------------QVPR-SEASAFG 141
Query: 282 VDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
+ EASAK N+ + F++L+ A+R+ + Q LPP
Sbjct: 142 ASHHVAYFEASAKLRLNVDEAFEQLV----------RAVRKYQEQELPP 180
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ +F+ + F Y TIE+ + + S++G+ +LDILDT+G++ ++
Sbjct: 23 SALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR 74
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
S++ + + N F +Y TIE+ + + ++G LDILDT+G
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 81 RFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
+ + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 22 QLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIEE + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F KY TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y +IE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F KY TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G + ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMR 68
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMR 68
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223
+ L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S V
Sbjct: 50 TXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV 109
Query: 224 PIVVVGNKSDLAD---ENRQ 240
P+V+VGNK DLA E+RQ
Sbjct: 110 PMVLVGNKCDLAARTVESRQ 129
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G + ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMR 68
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G + ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMR 68
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMR 68
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGN+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNR 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SF +I L R+ I K S VP+
Sbjct: 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 226 VVVGNKSDL 234
V+VGNK DL
Sbjct: 130 VLVGNKCDL 138
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 35 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94
Query: 125 GLKCGAVLWGPKKWG 139
G C + K +
Sbjct: 95 GFLCVFAINNSKSFA 109
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 70 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 226 VVVGNKSDL 234
V+VGNK DL
Sbjct: 130 VLVGNKCDL 138
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G + +G+
Sbjct: 35 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGE 94
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 95 GFLCVFAINNTKSF 108
>pdb|3ZEY|D Chain D, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 172
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQART 454
SLKS+G + EQFAWRH+YW + ++GI +R L + + VP+T K +T
Sbjct: 55 SLKSRGLIKEQFAWRHFYWTLNDEGINYMRKYLYLGADAVPNTHKVDHKT 104
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
L + T E+ AMR + + + F+ V+AI++ SFE+I R+ I K S VP+
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
V+VGNK DL
Sbjct: 113 VLVGNKCDL 121
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ +G+
Sbjct: 18 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77
Query: 125 GLKCGAVLWGPKKW 138
G C + K +
Sbjct: 78 GFLCVFAINNTKSF 91
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST-AVPIVVVGN 230
T ++ A+R S + F+LV++I + SF R+ I KA +P++VVGN
Sbjct: 58 TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 117
Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
KSDL +E R QVP + S + +W +VE
Sbjct: 118 KSDL-EERR------------------------------QVPVEEARSKAE-EWGVQYVE 145
Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + K
Sbjct: 146 TSAKTRANVDKVFFDLMREIRTK 168
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G
Sbjct: 17 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 60
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEAS 359
T F+E +++ K + + P L + L + VP + S + +W +VE S
Sbjct: 93 TAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ----VPVEEARSKAE-EWGVQYVETS 147
Query: 360 AKDNTNITQVFKELLVQAKVK 380
AK N+ +VF +L+ + + K
Sbjct: 148 AKTRANVDKVFFDLMREIRTK 168
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E AMR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK
Sbjct: 58 TAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
DLA E+RQ
Sbjct: 118 CDLAARTVESRQ 129
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ + + N F +Y TIE+ + + ++G LDILDT+G++ ++
Sbjct: 17 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMR 68
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST-AVPIVVVGN 230
T ++ A+R S + F+LV++I + SF R+ I KA +P++VVGN
Sbjct: 62 TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
KSDL +E R QVP + S + +W +VE
Sbjct: 122 KSDL-EERR------------------------------QVPVEEARSKAE-EWGVQYVE 149
Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + K
Sbjct: 150 TSAKTRANVDKVFFDLMREIRTK 172
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G
Sbjct: 21 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 64
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEAS 359
T F+E +++ K + + P L + L + VP + S + +W +VE S
Sbjct: 97 TAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ----VPVEEARSKAE-EWGVQYVETS 151
Query: 360 AKDNTNITQVFKELLVQAKVK 380
AK N+ +VF +L+ + + K
Sbjct: 152 AKTRANVDKVFFDLMREIRTK 172
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + DQ W +VE
Sbjct: 119 SDLEDK-RQVSV------------------EEAKNRADQ-------------WNVNYVET 146
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + +
Sbjct: 147 SAKTRANVDKVFFDLMREIRAR 168
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G++ SG+
Sbjct: 18 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77
Query: 125 GLKC 128
G C
Sbjct: 78 GFLC 81
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
FP ++ I + +ILVY++ SFE I++I + + +PI++VGNK DL E
Sbjct: 70 FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
+ Y+ +++ + W F+E+SAK+N
Sbjct: 127 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 154
Query: 298 NITQVFKELLVQAK 311
VF+ ++++A+
Sbjct: 155 TAVDVFRRIILEAE 168
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 378
H + Y+ +++ + W F+E+SAK+N VF+ ++++A+
Sbjct: 124 HMERVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + +Q W +VE
Sbjct: 133 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 160
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + +
Sbjct: 161 SAKTRANVDKVFFDLMREIRAR 182
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G++ SG+
Sbjct: 32 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91
Query: 125 GLKC 128
G C
Sbjct: 92 GFLC 95
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + +Q W +VE
Sbjct: 121 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 148
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + +
Sbjct: 149 SAKTRANVDKVFFDLMREIRAR 170
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G++ SG+
Sbjct: 20 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 79
Query: 125 GLKC 128
G C
Sbjct: 80 GFLC 83
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 61 TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + +Q W +VE
Sbjct: 121 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 148
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + +
Sbjct: 149 SAKTRANVDKVFFDLMREIRAR 170
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G + SG+
Sbjct: 20 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGE 79
Query: 125 GLKC 128
G C
Sbjct: 80 GFLC 83
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
FP ++ I + +ILVY++ SFE I++I + + +PI++VGNK DL E
Sbjct: 70 FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
+ Y+ +++ + W F+E+SAK+N
Sbjct: 127 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 154
Query: 298 NITQVFKELLVQAK 311
VF+ ++++A+
Sbjct: 155 TAVDVFRRIILEAE 168
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 378
H + Y+ +++ + W F+E+SAK+N VF+ ++++A+
Sbjct: 124 HMERVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
FP ++ I + +ILVY++ SFE I++I + + +PI++VGNK DL E
Sbjct: 68 FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
+ Y+ +++ + W F+E+SAK+N
Sbjct: 125 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 152
Query: 298 NITQVFKELLVQAK 311
VF+ ++++A+
Sbjct: 153 TAVDVFRRIILEAE 166
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 378
H + Y+ +++ + W F+E+SAK+N VF+ ++++A+
Sbjct: 122 HMERVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
FP ++ I + +ILVY++ SFE I++I + + +PI++VGNK DL E
Sbjct: 65 FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
+ Y+ +++ + W F+E+SAK+N
Sbjct: 122 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 149
Query: 298 NITQVFKELLVQAK 311
VF+ ++++A+
Sbjct: 150 TAVDVFRRIILEAE 163
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 378
H + Y+ +++ + W F+E+SAK+N VF+ ++++A+
Sbjct: 119 HMERVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAE 163
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + +Q W +VE
Sbjct: 129 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 156
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
SAK N+ +VF +L+ + + +
Sbjct: 157 SAKTRANVDKVFFDLMREIRAR 178
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-----------SGK 124
S++ +F+Y+ F Y+ T + + + ++G +++DILDT+G++ SG+
Sbjct: 28 SALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87
Query: 125 GLKC 128
G C
Sbjct: 88 GFLC 91
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF AMR + + D F++VY++ D SFE + I K + P+++V NK
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
DL
Sbjct: 133 VDL 135
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF AMR + + D F++VY++ D SFE + I K + P+++V NK
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
DL
Sbjct: 133 VDL 135
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ +F F P+Y TIE+ + + ++ LD+LDT+G++ ++
Sbjct: 32 SALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 83
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF AMR + + D F++VY++ D SFE + I K + P+++V NK
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
DL
Sbjct: 133 VDL 135
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF AMR + + D F++VY++ D SFE + I K + P+++V NK
Sbjct: 68 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 127
Query: 232 SDL 234
DL
Sbjct: 128 VDL 130
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
S++ +F F P Y TIE+ + + ++ LD+LDT+G++ ++
Sbjct: 27 SALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 78
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 52/206 (25%)
Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQ-RPMAYKT--------DVQLPSKLTSLAM- 171
SGK L +L G G + R N+ A+ T D+++ + +L +
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 172 -TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIF--ETKASTAVPIVV 227
T F ++R AD +L +++DD SFE + ++ I+ + K P VV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 228 VGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287
+GNK D E+RQV TTE ENG
Sbjct: 122 LGNKVD--KEDRQV---------------------------------TTEEAQTWCMENG 146
Query: 288 ---FVEASAKDNTNITQVFKELLVQA 310
++E SAKD+TN+T F+E + Q
Sbjct: 147 DYPYLETSAKDDTNVTVAFEEAVRQV 172
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 342 TTESVVQVDWENG---FVEASAKDNTNITQVFKELLVQA 377
TTE ENG ++E SAKD+TN+T F+E + Q
Sbjct: 134 TTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
++ DA+++VY++ D SFE+ +R + + + VPI++VGNKSDL +R+V +
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 128
Query: 246 G 246
G
Sbjct: 129 G 129
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
++ DA+++VY++ D SFE+ +R + + + VPI++VGNKSDL +R+V +
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 133
Query: 246 G 246
G
Sbjct: 134 G 134
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
++ DA+++VY++ D SFE+ +R + + + VPI++VGNKSDL +R+V +
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 133
Query: 246 G 246
G
Sbjct: 134 G 134
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 32/135 (23%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
DA+++VY+I D SFE+ +R + + + +PI++VGNKSDL R+V ++ G
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEG-- 137
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
V ++ F+E SA N+ ++F+ ++
Sbjct: 138 -----------------------------RAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVKYNLSPALRRR 323
Q +++ + RR
Sbjct: 169 QVRLRRDSKEKNERR 183
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 32/125 (25%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
DA+++VY+I D SFE+ +R + + + +PI++VGNKSDL R+V ++ G
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEG-- 137
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
CA V ++ F+E SA N+ ++F+ ++
Sbjct: 138 ---------RACA--------------------VVFDCKFIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVK 313
Q +++
Sbjct: 169 QVRLR 173
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 32/135 (23%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
DA+++VY+I D SFE+ +R + + + +PI++VGNKSDL R+V ++
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVS---- 135
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
G V +D F+E SA N+ ++F+ ++
Sbjct: 136 ----------------EGRAXAVVFDCK-----------FIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVKYNLSPALRRR 323
Q +++ + RR
Sbjct: 169 QVRLRRDSKEKNERR 183
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 32/125 (25%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
DA+++VY+I D SFE+ +R + + + +PI++VGNKSDL R+V ++ G
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGR- 169
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
CA V +D F+E SA N+ ++F+ ++
Sbjct: 170 ----------ACA---------VVFDCK-----------FIETSAAVQHNVKELFEGIVR 199
Query: 309 QAKVK 313
Q +++
Sbjct: 200 QVRLR 204
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
L T +E+ + I ++LVY++ +SF+ I + + E T VP+V+V
Sbjct: 76 LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLV 135
Query: 229 GNKSDLADENRQVDLTGG 246
GNK+DL+ E R+V G
Sbjct: 136 GNKADLSPE-REVQAVEG 152
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
+ A+++VY+I D SFE +R + T + VPI++VGNK+DLA R+V +
Sbjct: 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEE 133
Query: 246 G 246
G
Sbjct: 134 G 134
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 57/171 (33%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135
S+++ RFL F +Y T+E + +++ + ++ILDT+G++ + G
Sbjct: 42 SALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE------GH 95
Query: 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILV 195
+WG + F+LV
Sbjct: 96 MRWG--------------------------------------------------EGFVLV 105
Query: 196 YAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGG 246
Y I D SFEE+ +++ + E K V +++VGNK+DL D +RQV G
Sbjct: 106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-DHSRQVSTEEG 155
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAY--------KTDVQLPSKLTS 168
+SG + +KC V+ G G + + + N P Y +V + K +
Sbjct: 2 SSGSSGMQAIKC--VVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN 59
Query: 169 LAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAST 221
L + T ++ +R LS D F++ +++ P SFE +R +R H T
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT---- 115
Query: 222 AVPIVVVGNKSDLADENRQVD 242
PI++VG K DL D+ ++
Sbjct: 116 --PIILVGTKLDLRDDKDTIE 134
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMA----------YKTDVQLPSKLTSLAM- 171
G+ +KC V G + K CL + + Y +V + K +L +
Sbjct: 11 GQAIKCVVVGDG----AVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLW 66
Query: 172 -TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPI 225
T ++ +R LS D F++ +++ P SFE +R +R H T PI
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT------PI 120
Query: 226 VVVGNKSDLADENRQVD 242
++VG K DL D+ ++
Sbjct: 121 ILVGTKLDLRDDKDTIE 137
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 67 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 67 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 67 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 42 YIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271
E K VPI++VGNK DL DE+ + +L + S + A++IS
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM-ANRISAF---- 154
Query: 272 PYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
G++E SAK + +VF E+ +A ++ + +RR+ P
Sbjct: 155 ---------------GYLECSAKTKEGVREVF-EMATRAGLQVR-----KNKRRRGCP 191
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + SK +L + T ++ +R LS D F++ +++ P S+E +R
Sbjct: 46 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFP 105
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 106 EVRHHCPST------PIILVGTKLDLRDDKDTIE 133
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 42 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 45 YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 102
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 103 TPEVKHFCPNVPIILVGNKKDLRND 127
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 44 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 101
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 102 TPEVKHFCPNVPIILVGNKKDLRND 126
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 44 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 101
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 102 TPEVKHFCPNVPIILVGNKKDLRND 126
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 62 YIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 119
Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLT 244
E K VPI++VGNK DL DE+ + +L
Sbjct: 120 TPEVKHFCPNVPIILVGNKKDLRQDEHTRRELA 152
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 42 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + SK +L + T ++ +R LS D F++ +++ P S+E +R
Sbjct: 47 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFP 106
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 107 EVRHHCPST------PIILVGTKLDLRDDKDTIE 134
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 43 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 102
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 103 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 130
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 46 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 103
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 104 TPEVKHFCPNVPIILVGNKKDLRND 128
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 40 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 97
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 98 TPEVKHFCPNVPIILVGNKKDLRND 122
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 45 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 102
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 103 TPEVKHFCPNVPIILVGNKKDLRND 127
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 40 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 97
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 98 TPEVKHFCPNVPIILVGNKKDLRND 122
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 42 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + SK +L + T ++ +R LS D F++ +++ P S+E +R
Sbjct: 40 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPST------PIILVGTKLDLRDDKDTIE 127
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 42 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 43 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 100
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 101 TPEVKHFCPNVPIILVGNKKDLRND 125
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 62 YIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 119
Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLT 244
E K VPI++VGNK DL DE+ + +L
Sbjct: 120 TPEVKHFXPNVPIILVGNKKDLRQDEHTRRELA 152
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 44 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 101
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 102 TPEVKHFCPNVPIILVGNKKDLRND 126
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 59 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 118
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 119 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 146
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y DV++ + LA+ T ++ +R LS ++ ++ ++ID P+S E ++
Sbjct: 47 YVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQ--EKW 104
Query: 214 IFET-KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
I E VPI++VG K DL ++ + ++ Q ++ A QI T
Sbjct: 105 IAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGAT----- 159
Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFK 304
G+ E SAK + +VF+
Sbjct: 160 --------------GYYECSAKTGYGVREVFE 177
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ ++ID P+S E I
Sbjct: 43 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 100
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 101 TPEVKHFCPNVPIILVGNKKDLRND 125
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
+R + + DAF++V+++ D SF ++ + + +P+++VGNKSDLA +R+
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSRE 147
Query: 241 VDLTGG 246
V L G
Sbjct: 148 VSLEEG 153
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 41 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 100
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 101 EVRHHCPHT------PILLVGTKLDLRDDKDTIE 128
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
+ + DAF++V+++ D SF ++ + + +P+++VGNKSDLA +R+V L
Sbjct: 83 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEE 141
Query: 246 G 246
G
Sbjct: 142 G 142
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 41 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 100
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 101 EVRHHCPHT------PILLVGTKLDLRDDKDTIE 128
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
+ + DAF++V+++ D SF ++ + + +P+++VGNKSDLA +R+V L
Sbjct: 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEE 131
Query: 246 G 246
G
Sbjct: 132 G 132
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ +R LS D ++ +++D P+S E I
Sbjct: 62 YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIP--EKW 119
Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLT 244
+ E K VPI++V NK DL +DE+ + +L
Sbjct: 120 VPEVKHFCPNVPIILVANKKDLRSDEHVRTELA 152
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPHT------PILLVGTKLDLRDDKDTIE 127
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y D+++ K LA+ T ++ R LS D ++ ++ID P+S E I
Sbjct: 42 YVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDLADE 237
E K VPI++VGNK DL ++
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SF +R
Sbjct: 192 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 252 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 279
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SF +R
Sbjct: 192 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 252 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 279
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D F++ +++ P SF +R
Sbjct: 192 YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 252 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 279
>pdb|2XZM|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNI-PDEIVPSTLK 449
SLK +G++ E F W Y+Y+ +G E L+ L I D ++P T K
Sbjct: 48 SLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKTFK 93
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216
+V + +L ++ + T F ++ AD +LV+ + PN+F+ + RD F
Sbjct: 49 EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE-FL 107
Query: 217 TKAS----TAVPIVVVGNKSDLADENRQV 241
+AS P VV+GNK DL ENRQV
Sbjct: 108 IQASPRDPENFPFVVLGNKIDL--ENRQV 134
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + A ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNK 120
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQV + G
Sbjct: 121 TDLADK-RQVSIEEG 134
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216
+V + +L ++ + T F ++ AD +LV+ + PN+F+ + RD F
Sbjct: 49 EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE-FL 107
Query: 217 TKAS----TAVPIVVVGNKSDLADENRQV 241
+AS P VV+GNK DL ENRQV
Sbjct: 108 IQASPRDPENFPFVVLGNKIDL--ENRQV 134
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216
+V + +L ++ + T F ++ AD +LV+ + PN+F+ + RD F
Sbjct: 49 EVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE-FL 107
Query: 217 TKAS----TAVPIVVVGNKSDLADENRQV 241
+AS P VV+GNK DL ENRQV
Sbjct: 108 IQASPRDPENFPFVVLGNKIDL--ENRQV 134
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D ++ +++ P SFE +R
Sbjct: 42 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 101
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 102 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 129
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D ++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D ++ +++ P SFE +R
Sbjct: 44 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 103
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 104 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 131
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
Y +V + K +L + T ++ +R LS D ++ +++ P SFE +R
Sbjct: 40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 99
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
+R H T PI++VG K DL D+ ++
Sbjct: 100 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 127
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + A ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNK 127
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQV + G
Sbjct: 128 TDLADK-RQVSIEEG 141
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 57 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNK 115
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQV + G
Sbjct: 116 TDLADK-RQVSIEEG 129
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAV 223
L T +EF +R L ++ D F+L +++ P+SF+ + IR H
Sbjct: 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH------CPKA 125
Query: 224 PIVVVGNKSDLADENR 239
PI++VG +SDL ++ +
Sbjct: 126 PIILVGTQSDLREDVK 141
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216
+V + +L ++ + T F ++ AD +LV+ + PN+F+ + RD F
Sbjct: 49 EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE-FL 107
Query: 217 TKAS----TAVPIVVVGNKSDLADENRQV 241
+AS P VV+GNK D ENRQV
Sbjct: 108 IQASPRDPENFPFVVLGNKIDF--ENRQV 134
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 62 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNK 120
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQV + G
Sbjct: 121 TDLADK-RQVSIEEG 134
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
Y ++Q+ K L + T +++ +R L A +L + + PNSF+ I R +
Sbjct: 71 YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI-FNRWY 129
Query: 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
VPI+VVG K+DL + V+ + +GL + V Y
Sbjct: 130 PEVNHFCKKVPIIVVGCKTDLRKDKSLVN------KLRRNGL-------------EPVTY 170
Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
+ + + ++E SA+ + N+ VF+E
Sbjct: 171 HRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 58 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVGNK 116
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQ+ + G
Sbjct: 117 TDLADK-RQITIEEG 130
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
+ +V + ++ +L + T ++ +R LS AD F+L +++ S+E + ++
Sbjct: 46 FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENV--LKKW 103
Query: 214 IFETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
+ E + + VPIV+VG K DL D+ + YL+ + + + Q Q+
Sbjct: 104 MPELRRFAPNVPIVLVGTKLDLRDD-----------KGYLADHTNVITSTQGEELRKQI- 151
Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRR---RRRQS 327
++E S+K N+ VF +K L P R+ RRR++
Sbjct: 152 -----------GAAAYIECSSKTQQNVKAVF-----DTAIKVVLQPPRRKEVPRRRKN 193
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGN 230
T ++ +R LS AD FIL +++ S+E + + I E K + VPIV+VG
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIVLVGT 120
Query: 231 KSDLADENR 239
K DL D+ +
Sbjct: 121 KLDLRDDKQ 129
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + ++VY I + NSF++ D + T+ + V I++VGNK
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNK 130
Query: 232 SDLADENRQVDLTGG 246
+DLAD+ RQV + G
Sbjct: 131 TDLADK-RQVSIEEG 144
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ AD +L+Y + SF IR D I E A VPI++VGNK
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI-EDAAHETVPIMLVGNK 142
Query: 232 SDLAD 236
+D+ D
Sbjct: 143 ADIRD 147
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 37/152 (24%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIF 215
D+++ ++ + T F ++R +D +L +++DD SF+ + ++ I+
Sbjct: 52 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 111
Query: 216 --ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
+ K + P V++GNK+D+ + QV
Sbjct: 112 YADVKEPESFPFVILGNKTDIKER--------------------------------QVST 139
Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
+ ++ + + + + E SAKD+TN+ F+E
Sbjct: 140 EEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 32/136 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ + SA ILVY I +F+++ I + AS +++VGNK
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNK 140
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
D + G F A QI+G F EA
Sbjct: 141 LDCETDREITRQQGEKF------------AQQITGMR-------------------FCEA 169
Query: 292 SAKDNTNITQVFKELL 307
SAKDN N+ ++F +L+
Sbjct: 170 SAKDNFNVDEIFLKLV 185
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 194 LVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTY 251
+V+ +D DP F+E R+ D +F VP V++GNK D + + +L
Sbjct: 72 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSA----- 126
Query: 252 LSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
GL ++ + +I G Q P + + V NG++EA
Sbjct: 127 -LGLLNTTGSQRIEG---QRPVEVF--MCSVVMRNGYLEA 160
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 194 LVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTY 251
+V+ +D DP F+E R+ D +F VP V++GNK D + + +L
Sbjct: 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSA----- 148
Query: 252 LSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
GL ++ + +I G Q P + V + NG++EA
Sbjct: 149 -LGLLNTTGSQRIEG---QRPVEVFMCSVVM--RNGYLEA 182
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 33/119 (27%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
A FIL+Y I + SF ++ I +T + +++VGNK D+ DE
Sbjct: 78 AMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDMEDER---------- 126
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
V + + D + ++ F EASAKDN N+ Q F+ L+
Sbjct: 127 ---------VVSSERGRQLADHLGFE-------------FFEASAKDNINVKQTFERLV 163
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 355 FVEASAKDNTNITQVFKELL 374
F EASAKDN N+ Q F+ L+
Sbjct: 144 FFEASAKDNINVKQTFERLV 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF---ETKASTAVPIVVV 228
T F ++ AD +LVY + + +SFE I+ RD + P V++
Sbjct: 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 229 GNKSDLADENRQV 241
GNK D A+E++++
Sbjct: 125 GNKID-AEESKKI 136
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 189 ADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
AD F++ +++ P SFE +R +R H T PI++VG K DL D+ ++
Sbjct: 96 ADVFLICFSLVSPASFENVRAKWYPEVRHHCPNT------PIILVGTKLDLRDDKDTIE 148
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGN 230
T ++ +R LS AD F+L +++ S+E I + + E K + +PIV+VG
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIH--KKWLPELKHYAPGIPIVLVGT 118
Query: 231 KSDLADENR 239
K DL D+ +
Sbjct: 119 KLDLRDDKQ 127
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 160 VQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE 216
++L K L + T F + A +LVY I + SF+ IR IR+ E
Sbjct: 48 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN--IE 105
Query: 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276
AS V +++GNK D+ D+ RQV G
Sbjct: 106 EHASADVEKMILGNKCDVNDK-RQVSKERG------------------------------ 134
Query: 277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYN 315
+ +D+ F+E SAK N N+ F L K K +
Sbjct: 135 -EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 160 VQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE 216
++L K L + T F + A +LVY I + SF+ IR IR+ E
Sbjct: 50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN--IE 107
Query: 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276
AS V +++GNK D+ D+ RQV G
Sbjct: 108 EHASADVEKMILGNKCDVNDK-RQVSKERG------------------------------ 136
Query: 277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYN 315
+ +D+ F+E SAK N N+ F L K K +
Sbjct: 137 -EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGN 230
T ++ +R LS AD FIL +++ S+E + + I E + + VPI++VG
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGT 118
Query: 231 KSDLADENR 239
K DL D+ +
Sbjct: 119 KLDLRDDKQ 127
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 43/155 (27%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIF 215
D+++ ++ + T F ++R +D +L +++DD SF+ + ++ I+
Sbjct: 50 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 109
Query: 216 --ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
+ K + P V++GNK D+++ RQV
Sbjct: 110 YADVKEPESFPFVILGNKIDISE--RQV-------------------------------- 135
Query: 274 DTTESVVQVDWENG---FVEASAKDNTNITQVFKE 305
+TE +NG + E SAKD TN+ F+E
Sbjct: 136 -STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T EF A+ A A +LV++ D SFE I R+ + +P +V NK
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD--IPTALVQNK 118
Query: 232 SDLADEN 238
DL D++
Sbjct: 119 IDLLDDS 125
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 43/155 (27%)
Query: 159 DVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIF 215
D+++ ++ + T F ++R +D +L +++DD SF+ + ++ I+
Sbjct: 48 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107
Query: 216 --ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
+ K + P V++GNK D+++ RQV
Sbjct: 108 YADVKEPESFPFVILGNKIDISE--RQV-------------------------------- 133
Query: 274 DTTESVVQVDWENG---FVEASAKDNTNITQVFKE 305
+TE +NG + E SAKD TN+ F+E
Sbjct: 134 -STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 33/119 (27%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
A F+L+Y I + SF ++ I +T + +++VGNK DL DE
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGNKCDLEDER---------- 143
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
V A D + ++ F EASAK+N N+ QVF+ L+
Sbjct: 144 ---------VVPAEDGRRLADDLGFE-------------FFEASAKENINVKQVFERLV 180
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 355 FVEASAKDNTNITQVFKELL 374
F EASAK+N N+ QVF+ L+
Sbjct: 161 FFEASAKENINVKQVFERLV 180
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAY--------KTDVQLPSKLTS 168
+SG + +KC V+ G G + + + N+ P Y V + + +
Sbjct: 2 SSGSSGMQTIKC--VVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 59
Query: 169 LAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKAST 221
L + T ++ +R LS D F++ +++ P+SFE ++ I H +T
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---- 115
Query: 222 AVPIVVVGNKSDLADENRQVD 242
P ++VG + DL D+ ++
Sbjct: 116 --PFLLVGTQIDLRDDPSTIE 134
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 46/191 (24%)
Query: 139 GLDKVCL--RRALNQRPMAYKTDVQLPSKLTSLAM-----------TCSTNEFPAMRALS 185
G+ K CL R A + +Y + + + K+ ++ + T F + +
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
A I+VY + D S+ ++ I + AS V ++VGNKSDL + + T
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSDLTTKKVVDNTTA 137
Query: 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
F L G+P F+E SAK+ TN+ Q F
Sbjct: 138 KEFADSL-GIP-------------------------------FLETSAKNATNVEQAFMT 165
Query: 306 LLVQAKVKYNL 316
+ + K + L
Sbjct: 166 MAAEIKKRMGL 176
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 49/160 (30%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI----RLIRDHIFETKASTAVPIVV 227
T + A+ + A +LVY I NSFE I + +RD+ A + + I++
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDN-----ADSNIVILL 118
Query: 228 VGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287
VGNKSDL +L + D+ D Y E +
Sbjct: 119 VGNKSDL---------------KHLRVINDN----------DATQYAKKEKL-------A 146
Query: 288 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQS 327
F+E SA + TN+ F +LL + YN+ R+++Q+
Sbjct: 147 FIETSALEATNVELAFHQLLNEI---YNV-----RQKKQA 178
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ I + ++VY I + NSF + D + T+ + V I++VGNK
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNK 128
Query: 232 SDLADENRQV 241
+DL+D+ RQV
Sbjct: 129 TDLSDK-RQV 137
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 139 GLDKVCL--RRALNQRPMAYKTDVQLPSKLTSLAM-----------TCSTNEFPAMRALS 185
G+ K CL R A + +Y + + + K+ ++ + T F + +
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
A I+VY + D S+ ++ I + AS V ++VGNKSDL + + T
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSDLTTKKVVDNTTA 137
Query: 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
F L G+P F+E SAK+ TN+ Q F
Sbjct: 138 KEFADSL-GIP-------------------------------FLETSAKNATNVEQAFMT 165
Query: 306 LLVQAK 311
+ + K
Sbjct: 166 MAAEIK 171
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-STAVP 224
L L T ++ +R LS D F++ +++ +P SF+ ++ + + E K + VP
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVK--EEWVPELKEYAPNVP 124
Query: 225 IVVVGNKSDLADENRQV 241
+++G + DL D+ + +
Sbjct: 125 FLLIGTQIDLRDDPKTL 141
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY TI E+H F N +K D+ DT+G + GL+ G
Sbjct: 26 TTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDG 80
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
A FIL Y I + SF ++ I +T + +++VGNK D DE
Sbjct: 81 AXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDXEDER---------- 129
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
V + + D + ++ F EASAKDN N+ Q F+ L+
Sbjct: 130 ---------VVSSERGRQLADHLGFE-------------FFEASAKDNINVKQTFERLV 166
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 355 FVEASAKDNTNITQVFKELL 374
F EASAKDN N+ Q F+ L+
Sbjct: 147 FFEASAKDNINVKQTFERLV 166
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 114
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 115 LVGTQIDLRDDPSTIE 130
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 181 MRALSISSADAFILVYAIDDPNSFEE-IRLIRDHIFETKASTAVPIVVV------GNKSD 233
+ ALSI S +A IL + N+F E +++ D I + ++ T VP+ V + SD
Sbjct: 144 ITALSIKSGNAAILKGGKESVNTFREXAKIVNDTIAQFQSETGVPVGSVQLIETRQDVSD 203
Query: 234 LADENRQVDL 243
L D++ +DL
Sbjct: 204 LLDQDEYIDL 213
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 113
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 114 LVGTQIDLRDDPSTIE 129
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 114
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 115 LVGTQIDLRDDPSTIE 130
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 62 TAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 115
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 116 LVGTQIDLRDDPSTIE 131
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 68 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 121
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 122 LVGTQIDLRDDPSTIE 137
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 118
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 119 LVGTQIDLRDDPSTIE 134
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 59 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 112
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 113 LVGTQIDLRDDPSTIE 128
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 115
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 116 LVGTQIDLRDDPSTIE 131
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
SS++ RF NTFS Y TI + +NG +KL I DT+G++
Sbjct: 23 SSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQ---------LPSKLTSLAM--TCSTNEF 178
VL G G + LR N+ + T +Q + K +LA+ T F
Sbjct: 23 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERF 82
Query: 179 PAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTAVPIVVVGNKSDLADE 237
A+ + ++ ILVY I D +SF++++ +++ + + +VGNK DL E
Sbjct: 83 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE--LRKMLGNEICLCIVGNKIDLEKE 140
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY TI E+H F N +K D+ DT+G + GL+ G
Sbjct: 18 TTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDG 72
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 160 VQLPS--KLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHI 214
V LPS K+T L T F AMRA D ILV A DD + E I+ +D
Sbjct: 46 VSLPSGEKITFLD-TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKD-- 102
Query: 215 FETKASTAVPIVVVGNKSDLADEN 238
VPIV+ NK D A+ +
Sbjct: 103 ------AHVPIVLAINKCDKAEAD 120
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 113
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 114 LVGTQIDLRDDPSTIE 129
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY TI E+H F N +K D+ DT+G + GL+ G
Sbjct: 19 TTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDG 73
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-----LIRDHIFETKASTAVPIV 226
T ++ +R LS D F++ +++ P+SFE ++ I H +T P +
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT------PFL 111
Query: 227 VVGNKSDLADENRQVD 242
+VG + DL D+ ++
Sbjct: 112 LVGTQIDLRDDPSTIE 127
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 188 SADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
SA+A IL Y I SF + +R+ E AS V V+VGNK DLA E R+V
Sbjct: 98 SANALILTYDITCEESFRCLPEWLRE--IEQYASNKVITVLVGNKIDLA-ERREV 149
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGN 230
T F ++ I + A I+VY I + SFE + I+D + E V I +VGN
Sbjct: 57 TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGN 114
Query: 231 KSDLAD 236
K+DL D
Sbjct: 115 KTDLGD 120
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGL 126
+SII RF Y+TF Y+ TI + + ++ ++L + DT+G++ + L
Sbjct: 15 TSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL 66
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ +A A ++VY + P SF + R + E +AS + I +VGNK
Sbjct: 59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-QASKDIIIALVGNK 117
Query: 232 SDLADE 237
D E
Sbjct: 118 IDXLQE 123
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 29 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDG 78
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 17 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 71
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--STAVPIVVVG 229
T F A+ + ++ ILVY I D +SF++ +++ + E + + + +VG
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQK---VKNWVKELRKMLGNEICLCIVG 118
Query: 230 NKSDLADE 237
NK DL E
Sbjct: 119 NKIDLEKE 126
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--STAVPIVVVG 229
T F A+ + ++ ILVY I D +SF++ +++ + E + + + +VG
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQK---VKNWVKELRKMLGNEICLCIVG 118
Query: 230 NKSDLADE 237
NK DL E
Sbjct: 119 NKIDLEKE 126
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 148 ALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD---PNSF 204
+ Q AY+ V K + T F MRA D ILV A DD P +
Sbjct: 40 GITQHIGAYQVTVN--DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV 97
Query: 205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
E I KA+ VPI+V NK D + N
Sbjct: 98 EAIN-------HAKAAN-VPIIVAINKMDKPEAN 123
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDG 78
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
S ++ RF+ + F+P + TI + + +NG +KL I DT+G++
Sbjct: 17 SCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
S ++ RF+ + F+P + TI + + +NG +KL I DT+G++
Sbjct: 17 SCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 139 GLDKVCL--RRALNQRPMAYKTDVQLPSKLTSLAM-----------TCSTNEFPAMRALS 185
G+ K CL R A + +Y + + + K+ ++++ T F + +
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL-------ADEN 238
A I+VY + D +SF+ ++ I + A V ++VGNK DL +DE
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEI-DRYAMENVNKLLVGNKCDLVSKRVVTSDEG 137
Query: 239 RQV 241
R++
Sbjct: 138 REL 140
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 49/169 (28%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ--SGKGLKCGAVLW 133
++ ++R+ N F+PK+ T+ E K + DT G SGK K LW
Sbjct: 25 TTFLYRYTDNKFNPKFITTVGIDFRE---------KRVVYDTQGADGASGKAFKVHLQLW 75
Query: 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFI 193
D L R F ++ A F+
Sbjct: 76 -------DTAGLER------------------------------FRSLTTAFFRDAXGFL 98
Query: 194 LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
L + + SF +R + IV++GNK+DL D+ R+V+
Sbjct: 99 LXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-REVN 146
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 189 ADAFILVYAIDDPNSFEE----IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A AF++VY++D SF+ + L+ H ET+ S +P +++GNK D+A + RQV
Sbjct: 92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS--IPALLLGNKLDMA-QYRQVTKA 148
Query: 245 GG 246
G
Sbjct: 149 EG 150
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 49/169 (28%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ--SGKGLKCGAVLW 133
++ ++R+ N F+PK+ T+ DF V + DT G SGK K LW
Sbjct: 25 TTFLYRYTDNKFNPKFITTV----GIDFREKRV-----VYDTQGADGASGKAFKVHLQLW 75
Query: 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFI 193
D L R F ++ A F+
Sbjct: 76 -------DTAGLER------------------------------FRSLTTAFFRDAXGFL 98
Query: 194 LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
L + + SF +R + IV++GNK+DL D+ R+V+
Sbjct: 99 LXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-REVN 146
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ A F+L++ + + SF +R + S IV+ GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136
Query: 232 SDLADE 237
SDL D+
Sbjct: 137 SDLEDQ 142
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T F ++ A F+L++ + SF +R + IV++GNK
Sbjct: 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 150
Query: 232 SDLADENRQVD 242
+DL D+ R+V+
Sbjct: 151 ADLPDQ-REVN 160
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 49/169 (28%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ--SGKGLKCGAVLW 133
++ ++R+ N F+PK+ T+ DF V + DT G SGK K LW
Sbjct: 25 TTFLYRYTDNKFNPKFITTV----GIDFREKRV-----VYDTQGADGASGKAFKVHLQLW 75
Query: 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFI 193
D L R F ++ A F+
Sbjct: 76 -------DTAGLER------------------------------FRSLTTAFFRDAMGFL 98
Query: 194 LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
L++ + SF +R + IV++GNK+DL D+ R+V+
Sbjct: 99 LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-REVN 146
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 49/169 (28%)
Query: 76 SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ--SGKGLKCGAVLW 133
++ ++R+ N F+PK+ T+ E K + DT G SGK K LW
Sbjct: 25 TTFLYRYTDNKFNPKFITTVGIDFRE---------KRVVYDTQGADGASGKAFKVHLQLW 75
Query: 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFI 193
D L R F ++ A F+
Sbjct: 76 -------DTAGLER------------------------------FRSLTTAFFRDAMGFL 98
Query: 194 LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
L++ + SF +R + IV++GNK+DL D+ R+V+
Sbjct: 99 LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-REVN 146
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 SSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129
++ + R L F KY T+ E+H F N +K ++ DT+G++ GL+ G
Sbjct: 24 TTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 193 ILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQT 250
IL+Y ID D FEE + E + + VP+++ NK DL LT P
Sbjct: 87 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--------LTAAPASE 138
Query: 251 YLSGL 255
GL
Sbjct: 139 IAEGL 143
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 193 ILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQT 250
IL+Y ID D FEE + E + + VP+++ NK DL LT P
Sbjct: 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--------LTAAPASE 137
Query: 251 YLSGL 255
GL
Sbjct: 138 IAEGL 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,775,471
Number of Sequences: 62578
Number of extensions: 742218
Number of successful extensions: 2175
Number of sequences better than 100.0: 239
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 522
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)