Query psy1524
Match_columns 592
No_of_seqs 549 out of 2268
Neff 6.5
Searched_HMMs 46136
Date Sat Aug 17 00:52:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3344|consensus 100.0 8.8E-49 1.9E-53 348.6 2.4 133 367-510 13-149 (150)
2 PTZ00034 40S ribosomal protein 100.0 4.9E-39 1.1E-43 284.0 3.0 85 367-456 14-100 (124)
3 PF03501 S10_plectin: Plectin/ 100.0 2.2E-38 4.8E-43 269.3 -3.3 83 367-453 11-94 (95)
4 KOG0084|consensus 100.0 1.6E-34 3.6E-39 275.8 18.3 172 58-317 5-178 (205)
5 KOG0078|consensus 100.0 1.4E-32 3.1E-37 265.8 20.5 171 58-316 8-179 (207)
6 KOG0092|consensus 100.0 3.3E-32 7.1E-37 259.2 16.0 170 60-317 3-173 (200)
7 KOG0094|consensus 100.0 6.7E-32 1.5E-36 257.1 16.4 167 60-313 20-187 (221)
8 KOG0098|consensus 100.0 1.6E-31 3.5E-36 252.6 18.5 170 59-316 3-173 (216)
9 KOG0394|consensus 100.0 4.8E-32 1E-36 255.8 14.8 172 59-314 6-181 (210)
10 KOG0080|consensus 100.0 3.8E-31 8.2E-36 244.3 15.5 173 57-316 6-179 (209)
11 cd04120 Rab12 Rab12 subfamily. 100.0 5E-30 1.1E-34 252.9 23.1 164 63-313 1-165 (202)
12 cd04121 Rab40 Rab40 subfamily. 100.0 5.7E-30 1.2E-34 249.9 21.6 167 60-315 4-171 (189)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.3E-30 1.2E-34 248.5 20.6 176 60-311 3-180 (182)
14 KOG0087|consensus 100.0 3.5E-30 7.5E-35 248.4 15.9 172 55-314 7-179 (222)
15 cd04133 Rop_like Rop subfamily 100.0 1.1E-29 2.5E-34 245.0 19.4 170 63-310 2-172 (176)
16 cd04131 Rnd Rnd subfamily. Th 100.0 1.8E-29 3.8E-34 243.8 20.2 174 62-311 1-176 (178)
17 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.5E-29 5.5E-34 240.7 20.8 164 62-312 2-165 (172)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.8E-29 1.7E-33 249.3 23.8 180 58-313 9-190 (232)
19 cd01875 RhoG RhoG subfamily. 100.0 4.2E-29 9.1E-34 243.3 20.4 176 61-312 2-178 (191)
20 KOG0086|consensus 100.0 1.7E-29 3.7E-34 231.5 15.7 175 56-318 3-178 (214)
21 cd04136 Rap_like Rap-like subf 100.0 8.8E-29 1.9E-33 231.5 19.4 161 63-310 2-162 (163)
22 KOG0079|consensus 100.0 1.7E-29 3.7E-34 230.4 13.5 167 59-314 5-172 (198)
23 cd04122 Rab14 Rab14 subfamily. 100.0 2.2E-28 4.7E-33 231.2 20.7 162 62-311 2-164 (166)
24 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-28 4.1E-33 230.7 19.6 161 63-310 2-162 (164)
25 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.7E-28 3.6E-33 235.8 19.4 173 62-310 1-174 (175)
26 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.5E-28 7.7E-33 238.1 21.8 169 63-317 1-174 (201)
27 PTZ00369 Ras-like protein; Pro 100.0 4.8E-28 1E-32 235.0 21.3 168 60-314 3-170 (189)
28 KOG0091|consensus 100.0 6.5E-29 1.4E-33 230.1 14.3 170 60-316 6-178 (213)
29 KOG0093|consensus 100.0 1.2E-28 2.7E-33 224.6 14.9 171 56-314 15-186 (193)
30 cd04176 Rap2 Rap2 subgroup. T 100.0 6.2E-28 1.3E-32 226.7 19.4 162 62-310 1-162 (163)
31 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-27 2.3E-32 227.0 20.7 164 61-312 2-166 (167)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.8E-28 2.1E-32 239.9 21.6 178 62-315 1-180 (222)
33 cd04127 Rab27A Rab27a subfamil 100.0 9E-28 2E-32 229.5 20.4 166 60-312 2-178 (180)
34 cd04144 Ras2 Ras2 subfamily. 100.0 7.9E-28 1.7E-32 233.6 20.0 165 64-315 1-167 (190)
35 smart00173 RAS Ras subfamily o 100.0 1.2E-27 2.6E-32 224.7 19.9 162 63-311 1-162 (164)
36 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.6E-27 3.5E-32 221.8 20.3 161 62-310 1-161 (162)
37 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-27 3.1E-32 225.4 19.8 159 63-309 1-160 (161)
38 cd01871 Rac1_like Rac1-like su 100.0 1E-27 2.2E-32 230.2 18.9 171 63-309 2-173 (174)
39 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.8E-27 6.1E-32 221.6 20.6 162 62-310 2-163 (164)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 2.3E-27 5E-32 222.0 19.8 162 63-311 1-167 (168)
41 cd01865 Rab3 Rab3 subfamily. 100.0 3.2E-27 6.9E-32 223.3 20.5 162 63-312 2-164 (165)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.4E-27 9.5E-32 221.8 20.7 162 62-311 2-164 (166)
43 PF00071 Ras: Ras family; Int 100.0 3.5E-27 7.7E-32 221.0 19.6 160 64-311 1-161 (162)
44 cd04134 Rho3 Rho3 subfamily. 100.0 2.2E-27 4.9E-32 230.4 18.5 173 64-312 2-175 (189)
45 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.2E-27 7E-32 228.7 19.4 167 63-313 1-168 (182)
46 cd04140 ARHI_like ARHI subfami 100.0 5.4E-27 1.2E-31 221.7 20.1 160 63-309 2-163 (165)
47 cd04109 Rab28 Rab28 subfamily. 100.0 4.7E-27 1E-31 233.0 20.5 163 63-312 1-167 (215)
48 KOG0095|consensus 100.0 1.3E-27 2.9E-32 218.3 14.9 169 57-313 2-171 (213)
49 KOG0395|consensus 100.0 2.3E-27 5E-32 232.9 17.6 169 61-316 2-170 (196)
50 cd01864 Rab19 Rab19 subfamily. 100.0 6.6E-27 1.4E-31 220.6 19.9 162 61-309 2-164 (165)
51 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7.1E-27 1.5E-31 223.4 20.3 164 64-312 2-166 (170)
52 cd04103 Centaurin_gamma Centau 99.9 4.2E-27 9E-32 222.7 18.0 157 63-309 1-157 (158)
53 cd04143 Rhes_like Rhes_like su 99.9 6.1E-27 1.3E-31 237.8 19.7 163 63-311 1-171 (247)
54 cd04111 Rab39 Rab39 subfamily. 99.9 9.9E-27 2.2E-31 230.5 20.5 165 62-313 2-168 (211)
55 cd01868 Rab11_like Rab11-like. 99.9 1.4E-26 3E-31 218.0 20.3 162 61-310 2-164 (165)
56 cd04116 Rab9 Rab9 subfamily. 99.9 1.3E-26 2.9E-31 219.4 20.2 163 60-309 3-169 (170)
57 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-26 2.4E-31 228.2 20.0 174 63-314 1-177 (198)
58 cd04110 Rab35 Rab35 subfamily. 99.9 2.3E-26 4.9E-31 225.3 22.0 167 60-315 4-171 (199)
59 smart00174 RHO Rho (Ras homolo 99.9 7.6E-27 1.7E-31 221.6 18.0 171 65-311 1-172 (174)
60 cd01866 Rab2 Rab2 subfamily. 99.9 2.8E-26 6.1E-31 217.7 21.2 165 60-312 2-167 (168)
61 cd04125 RabA_like RabA-like su 99.9 2.3E-26 5E-31 222.4 20.8 163 63-313 1-164 (188)
62 cd04177 RSR1 RSR1 subgroup. R 99.9 2.4E-26 5.3E-31 217.9 20.4 164 62-311 1-164 (168)
63 cd04132 Rho4_like Rho4-like su 99.9 2.6E-26 5.6E-31 221.2 20.8 170 63-316 1-172 (187)
64 COG5045 Ribosomal protein S10E 99.9 1.1E-28 2.4E-33 205.2 3.6 84 367-455 13-98 (105)
65 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-26 2.4E-31 227.7 18.3 176 62-309 2-194 (195)
66 cd04112 Rab26 Rab26 subfamily. 99.9 2.4E-26 5.3E-31 223.4 20.3 166 63-316 1-168 (191)
67 PLN03071 GTP-binding nuclear p 99.9 2.1E-26 4.5E-31 229.6 20.0 161 60-311 11-172 (219)
68 KOG0088|consensus 99.9 1.6E-27 3.6E-32 219.6 11.0 170 57-314 8-178 (218)
69 PLN03110 Rab GTPase; Provision 99.9 4.6E-26 1E-30 226.4 21.9 167 59-313 9-176 (216)
70 cd04115 Rab33B_Rab33A Rab33B/R 99.9 3.4E-26 7.4E-31 217.5 20.0 162 62-310 2-168 (170)
71 cd04106 Rab23_lke Rab23-like s 99.9 3.4E-26 7.4E-31 214.1 19.4 158 63-309 1-161 (162)
72 cd00877 Ran Ran (Ras-related n 99.9 3.8E-26 8.2E-31 217.2 19.3 160 63-313 1-161 (166)
73 cd04126 Rab20 Rab20 subfamily. 99.9 4.2E-26 9.1E-31 227.9 20.2 178 63-313 1-192 (220)
74 cd04113 Rab4 Rab4 subfamily. 99.9 5.2E-26 1.1E-30 213.2 19.2 159 63-309 1-160 (161)
75 cd04146 RERG_RasL11_like RERG/ 99.9 3.5E-26 7.6E-31 215.7 18.0 161 64-311 1-164 (165)
76 KOG0097|consensus 99.9 3.5E-26 7.5E-31 207.3 17.0 171 58-316 7-178 (215)
77 cd04124 RabL2 RabL2 subfamily. 99.9 6.8E-26 1.5E-30 213.8 19.7 159 63-313 1-160 (161)
78 PLN03108 Rab family protein; P 99.9 1.1E-25 2.3E-30 222.7 21.7 167 60-314 4-171 (210)
79 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4E-26 8.7E-31 217.7 17.9 170 63-308 1-171 (173)
80 KOG0081|consensus 99.9 1.7E-27 3.6E-32 219.7 7.9 169 58-313 5-183 (219)
81 cd04135 Tc10 TC10 subfamily. 99.9 6.7E-26 1.4E-30 215.1 18.5 172 63-310 1-173 (174)
82 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.1E-25 4.6E-30 209.4 19.8 159 63-310 1-163 (164)
83 PLN03118 Rab family protein; P 99.9 5.1E-25 1.1E-29 217.5 23.4 171 56-314 8-180 (211)
84 cd04118 Rab24 Rab24 subfamily. 99.9 2.8E-25 6E-30 215.3 20.5 166 63-313 1-168 (193)
85 cd04139 RalA_RalB RalA/RalB su 99.9 3E-25 6.5E-30 207.2 19.9 162 63-311 1-162 (164)
86 cd01892 Miro2 Miro2 subfamily. 99.9 1.1E-25 2.3E-30 214.9 16.9 163 60-311 2-166 (169)
87 cd04147 Ras_dva Ras-dva subfam 99.9 2.5E-25 5.5E-30 217.6 19.6 175 64-323 1-175 (198)
88 smart00175 RAB Rab subfamily o 99.9 4.3E-25 9.4E-30 206.4 20.3 161 63-311 1-162 (164)
89 smart00176 RAN Ran (Ras-relate 99.9 2.2E-25 4.8E-30 219.5 19.1 155 68-313 1-156 (200)
90 cd01861 Rab6 Rab6 subfamily. 99.9 3.6E-25 7.7E-30 207.0 19.5 159 63-309 1-160 (161)
91 cd01860 Rab5_related Rab5-rela 99.9 5.9E-25 1.3E-29 205.9 20.2 161 62-310 1-162 (163)
92 cd04148 RGK RGK subfamily. Th 99.9 4E-25 8.8E-30 220.6 20.0 162 63-313 1-165 (221)
93 cd01862 Rab7 Rab7 subfamily. 99.9 9.3E-25 2E-29 206.1 20.7 165 63-313 1-169 (172)
94 cd01870 RhoA_like RhoA-like su 99.9 4.5E-25 9.6E-30 209.6 18.6 172 63-310 2-174 (175)
95 KOG0083|consensus 99.9 8.8E-27 1.9E-31 209.4 5.7 160 66-313 1-162 (192)
96 cd04123 Rab21 Rab21 subfamily. 99.9 1.5E-24 3.2E-29 201.8 19.9 160 63-310 1-161 (162)
97 cd01863 Rab18 Rab18 subfamily. 99.9 1.5E-24 3.3E-29 203.0 19.3 159 63-309 1-160 (161)
98 cd04129 Rho2 Rho2 subfamily. 99.9 1.7E-24 3.8E-29 209.7 19.2 178 63-318 2-180 (187)
99 KOG0393|consensus 99.9 1.1E-25 2.4E-30 218.6 10.4 180 60-315 2-183 (198)
100 cd04114 Rab30 Rab30 subfamily. 99.9 4.6E-24 9.9E-29 201.3 21.2 163 60-310 5-168 (169)
101 cd00876 Ras Ras family. The R 99.9 3.5E-24 7.6E-29 198.9 18.4 159 64-309 1-159 (160)
102 cd04137 RheB Rheb (Ras Homolog 99.9 6.3E-24 1.4E-28 203.1 20.2 165 63-314 2-166 (180)
103 cd04149 Arf6 Arf6 subfamily. 99.9 2.9E-24 6.3E-29 204.9 16.9 156 61-308 8-167 (168)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 8.7E-24 1.9E-28 204.2 19.3 168 62-318 3-177 (183)
105 cd00157 Rho Rho (Ras homology) 99.9 7.9E-24 1.7E-28 199.5 17.9 169 63-308 1-170 (171)
106 cd04158 ARD1 ARD1 subfamily. 99.9 6.1E-24 1.3E-28 202.2 17.3 158 64-313 1-163 (169)
107 PLN00223 ADP-ribosylation fact 99.9 1.3E-23 2.7E-28 203.3 18.0 161 60-312 15-179 (181)
108 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-23 3.6E-28 198.2 17.9 162 63-311 1-164 (166)
109 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.2E-23 2.6E-28 198.6 16.5 154 63-308 1-158 (159)
110 cd00154 Rab Rab family. Rab G 99.9 3.4E-23 7.4E-28 190.4 18.9 157 63-307 1-158 (159)
111 smart00177 ARF ARF-like small 99.9 2.4E-23 5.3E-28 199.7 17.4 158 61-310 12-173 (175)
112 cd04154 Arl2 Arl2 subfamily. 99.9 3.3E-23 7.1E-28 197.6 18.0 157 60-308 12-172 (173)
113 PTZ00133 ADP-ribosylation fact 99.9 3.2E-23 7E-28 200.5 17.9 161 61-313 16-180 (182)
114 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.5E-23 3.3E-28 199.1 13.8 152 65-308 2-163 (164)
115 PTZ00132 GTP-binding nuclear p 99.9 3.6E-22 7.7E-27 197.7 21.0 164 58-312 5-169 (215)
116 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.3E-22 4.9E-27 198.5 19.4 120 63-237 1-144 (202)
117 cd04157 Arl6 Arl6 subfamily. 99.9 8E-23 1.7E-27 191.0 15.3 154 64-308 1-161 (162)
118 KOG4252|consensus 99.9 3.4E-24 7.4E-29 201.4 5.9 173 56-317 14-187 (246)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.3E-22 1.4E-26 185.1 16.9 154 64-308 1-159 (160)
120 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.2E-22 6.9E-27 190.4 14.4 159 64-308 1-166 (167)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.4E-21 2.9E-26 187.1 18.4 155 62-308 15-173 (174)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1.6E-21 3.4E-26 188.3 17.8 158 60-309 17-189 (190)
123 cd04151 Arl1 Arl1 subfamily. 99.9 9.7E-22 2.1E-26 184.3 15.8 153 64-308 1-157 (158)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.7E-21 3.6E-26 183.5 16.6 154 64-308 1-166 (167)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.8E-21 6E-26 180.6 16.7 153 64-308 1-157 (158)
126 PLN00023 GTP-binding protein; 99.9 1.1E-20 2.4E-25 196.9 20.5 126 57-237 16-166 (334)
127 smart00178 SAR Sar1p-like memb 99.9 8E-21 1.7E-25 183.8 17.4 157 61-309 16-183 (184)
128 cd04159 Arl10_like Arl10-like 99.9 2.3E-20 5E-25 171.9 17.6 153 65-308 2-158 (159)
129 PTZ00099 rab6; Provisional 99.9 1.7E-20 3.6E-25 181.2 17.0 140 85-312 3-143 (176)
130 cd01890 LepA LepA subfamily. 99.8 6.4E-20 1.4E-24 174.9 17.8 154 64-310 2-176 (179)
131 cd01897 NOG NOG1 is a nucleola 99.8 1.4E-19 2.9E-24 170.6 17.8 163 64-310 2-167 (168)
132 cd01898 Obg Obg subfamily. Th 99.8 9.9E-20 2.1E-24 171.6 16.6 165 64-309 2-169 (170)
133 TIGR00231 small_GTP small GTP- 99.8 2.7E-19 5.9E-24 163.2 18.8 156 62-306 1-159 (161)
134 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-19 2.6E-24 172.0 17.1 157 60-308 12-172 (173)
135 COG1100 GTPase SAR1 and relate 99.8 3E-19 6.5E-24 176.1 19.3 178 62-314 5-188 (219)
136 COG2262 HflX GTPases [General 99.8 7.7E-20 1.7E-24 192.8 13.7 253 24-372 145-408 (411)
137 PRK12299 obgE GTPase CgtA; Rev 99.8 5.2E-19 1.1E-23 187.1 20.0 168 63-312 159-329 (335)
138 PF00025 Arf: ADP-ribosylation 99.8 2.9E-19 6.2E-24 172.0 16.4 159 60-310 12-175 (175)
139 TIGR00436 era GTP-binding prot 99.8 2.1E-19 4.6E-24 184.7 16.4 210 64-360 2-223 (270)
140 TIGR02528 EutP ethanolamine ut 99.8 1.3E-19 2.7E-24 166.8 13.3 140 64-307 2-141 (142)
141 cd04171 SelB SelB subfamily. 99.8 5.1E-19 1.1E-23 165.1 15.6 153 64-308 2-163 (164)
142 TIGR03156 GTP_HflX GTP-binding 99.8 3.6E-19 7.9E-24 189.6 16.4 162 60-309 187-350 (351)
143 PRK15494 era GTPase Era; Provi 99.8 8.6E-19 1.9E-23 186.0 17.8 204 60-352 50-266 (339)
144 cd01878 HflX HflX subfamily. 99.8 2.3E-18 4.9E-23 168.7 18.5 164 60-309 39-203 (204)
145 PRK03003 GTP-binding protein D 99.8 1.1E-18 2.4E-23 192.9 18.2 174 61-315 210-386 (472)
146 PRK11058 GTPase HflX; Provisio 99.8 1.1E-18 2.3E-23 190.2 16.1 217 62-372 197-416 (426)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.1E-18 6.7E-23 160.9 16.4 157 64-310 2-165 (168)
148 PRK04213 GTP-binding protein; 99.8 1.2E-18 2.6E-23 170.1 13.6 166 60-311 7-192 (201)
149 cd00882 Ras_like_GTPase Ras-li 99.8 5.1E-18 1.1E-22 152.5 16.1 155 67-307 1-156 (157)
150 cd01881 Obg_like The Obg-like 99.8 2.5E-18 5.4E-23 162.5 13.8 161 67-309 1-175 (176)
151 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-17 2.5E-22 154.6 16.5 154 66-309 1-156 (157)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.2E-17 2.6E-22 182.9 18.8 160 59-312 200-361 (442)
153 TIGR02729 Obg_CgtA Obg family 99.8 1.5E-17 3.2E-22 175.8 18.5 166 63-310 158-328 (329)
154 KOG0073|consensus 99.8 2.6E-17 5.6E-22 153.5 17.6 165 60-312 14-179 (185)
155 cd01879 FeoB Ferrous iron tran 99.8 1.1E-17 2.3E-22 155.5 15.2 153 67-310 1-156 (158)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.4E-17 5.2E-22 152.2 17.4 153 63-310 2-156 (157)
157 cd01891 TypA_BipA TypA (tyrosi 99.8 1.1E-17 2.4E-22 162.9 15.8 115 63-237 3-132 (194)
158 PRK05291 trmE tRNA modificatio 99.8 8.6E-18 1.9E-22 184.6 16.6 155 61-311 214-370 (449)
159 cd01895 EngA2 EngA2 subfamily. 99.8 4.2E-17 9.1E-22 152.6 18.4 165 62-309 2-173 (174)
160 TIGR03594 GTPase_EngA ribosome 99.8 3E-17 6.6E-22 178.9 20.0 175 59-313 169-346 (429)
161 PF02421 FeoB_N: Ferrous iron 99.7 8.1E-18 1.8E-22 159.2 12.6 153 63-306 1-156 (156)
162 PRK00089 era GTPase Era; Revie 99.7 1.6E-17 3.5E-22 172.3 15.6 207 61-352 4-221 (292)
163 PRK03003 GTP-binding protein D 99.7 3.3E-17 7.1E-22 181.2 18.6 161 62-312 38-200 (472)
164 PF08477 Miro: Miro-like prote 99.7 1.3E-17 2.7E-22 148.8 12.0 115 64-233 1-119 (119)
165 KOG3883|consensus 99.7 3.2E-17 7E-22 151.1 14.3 167 60-312 7-176 (198)
166 COG1159 Era GTPase [General fu 99.7 6.5E-17 1.4E-21 164.9 17.0 216 60-360 4-231 (298)
167 cd00881 GTP_translation_factor 99.7 5.7E-17 1.2E-21 154.8 15.7 156 64-310 1-186 (189)
168 PRK12297 obgE GTPase CgtA; Rev 99.7 1.6E-16 3.6E-21 172.5 20.8 162 63-313 159-329 (424)
169 COG0486 ThdF Predicted GTPase 99.7 4.7E-17 1E-21 174.5 16.2 165 57-313 212-378 (454)
170 PRK12296 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.5E-21 176.1 18.2 169 62-313 159-342 (500)
171 cd01889 SelB_euk SelB subfamil 99.7 8.4E-17 1.8E-21 156.5 15.2 159 63-310 1-185 (192)
172 PRK15467 ethanolamine utilizat 99.7 9.4E-17 2E-21 152.2 14.9 144 64-311 3-147 (158)
173 cd04163 Era Era subfamily. Er 99.7 1.2E-16 2.6E-21 147.9 15.3 163 62-309 3-167 (168)
174 PRK09518 bifunctional cytidyla 99.7 2.5E-16 5.4E-21 182.2 18.4 173 61-314 449-624 (712)
175 PRK00093 GTP-binding protein D 99.7 3.5E-16 7.6E-21 171.0 18.6 158 63-310 2-161 (435)
176 KOG0070|consensus 99.7 1.4E-16 3E-21 152.0 12.6 161 60-312 15-179 (181)
177 PRK00093 GTP-binding protein D 99.7 5.3E-16 1.1E-20 169.6 18.9 172 60-312 171-345 (435)
178 cd04105 SR_beta Signal recogni 99.7 5.1E-17 1.1E-21 160.3 9.8 119 64-237 2-124 (203)
179 TIGR01393 lepA GTP-binding pro 99.7 5.2E-16 1.1E-20 175.7 18.7 156 62-310 3-179 (595)
180 PRK12298 obgE GTPase CgtA; Rev 99.7 6.5E-16 1.4E-20 166.7 18.4 170 63-313 160-335 (390)
181 KOG1673|consensus 99.7 5E-17 1.1E-21 150.2 8.1 172 58-313 16-188 (205)
182 PRK00454 engB GTP-binding prot 99.7 6.6E-16 1.4E-20 149.5 16.3 170 59-311 21-194 (196)
183 TIGR03598 GTPase_YsxC ribosome 99.7 3.4E-16 7.3E-21 150.6 14.1 160 59-300 15-179 (179)
184 COG1160 Predicted GTPases [Gen 99.7 7.6E-16 1.6E-20 164.9 17.5 172 60-314 176-354 (444)
185 KOG0075|consensus 99.7 7.1E-17 1.5E-21 148.0 8.1 162 62-310 20-181 (186)
186 KOG0096|consensus 99.7 7.9E-17 1.7E-21 153.5 7.8 163 60-313 8-171 (216)
187 TIGR03594 GTPase_EngA ribosome 99.7 9.8E-16 2.1E-20 167.1 17.3 158 64-311 1-160 (429)
188 TIGR00487 IF-2 translation ini 99.7 2.6E-15 5.6E-20 169.5 19.3 156 59-309 84-248 (587)
189 cd00880 Era_like Era (E. coli 99.6 2.2E-15 4.8E-20 137.3 14.4 158 67-309 1-162 (163)
190 cd01896 DRG The developmentall 99.6 6.3E-15 1.4E-19 148.6 18.3 55 64-120 2-57 (233)
191 COG1160 Predicted GTPases [Gen 99.6 2.6E-15 5.7E-20 160.8 15.8 159 63-310 4-164 (444)
192 PRK09518 bifunctional cytidyla 99.6 5.3E-15 1.2E-19 171.2 19.6 162 61-312 274-437 (712)
193 CHL00189 infB translation init 99.6 4.9E-15 1.1E-19 169.9 18.9 157 60-310 242-409 (742)
194 TIGR00437 feoB ferrous iron tr 99.6 3.5E-15 7.6E-20 168.9 15.9 151 69-310 1-154 (591)
195 TIGR00475 selB selenocysteine- 99.6 4.6E-15 1E-19 167.7 16.1 155 63-311 1-166 (581)
196 KOG4423|consensus 99.6 2.2E-17 4.8E-22 156.7 -2.5 173 59-316 22-199 (229)
197 PRK05306 infB translation init 99.6 1.7E-14 3.8E-19 166.7 19.7 160 59-309 287-450 (787)
198 cd01876 YihA_EngB The YihA (En 99.6 7.9E-15 1.7E-19 136.2 13.8 164 64-309 1-169 (170)
199 KOG1423|consensus 99.6 4.3E-15 9.2E-20 151.1 12.5 232 56-351 66-320 (379)
200 TIGR00491 aIF-2 translation in 99.6 1.8E-14 3.9E-19 162.5 17.3 112 62-236 4-135 (590)
201 cd01888 eIF2_gamma eIF2-gamma 99.6 1.4E-14 3.1E-19 142.7 14.3 103 176-310 94-198 (203)
202 KOG0071|consensus 99.6 2.6E-14 5.6E-19 130.4 13.8 158 61-310 16-177 (180)
203 PRK09554 feoB ferrous iron tra 99.6 3.4E-14 7.4E-19 164.8 18.5 163 61-310 2-167 (772)
204 PRK05433 GTP-binding protein L 99.6 4.9E-14 1.1E-18 159.9 18.7 157 61-310 6-183 (600)
205 KOG0076|consensus 99.6 7E-15 1.5E-19 138.6 9.6 163 60-313 15-189 (197)
206 KOG1707|consensus 99.6 7.9E-15 1.7E-19 159.7 11.1 166 58-310 5-174 (625)
207 PF00009 GTP_EFTU: Elongation 99.5 1.7E-13 3.6E-18 133.1 16.7 160 61-310 2-186 (188)
208 KOG1191|consensus 99.5 8.9E-14 1.9E-18 149.3 14.3 177 61-313 267-452 (531)
209 PRK04004 translation initiatio 99.5 2.3E-13 5E-18 153.9 18.0 113 60-235 4-136 (586)
210 COG2229 Predicted GTPase [Gene 99.5 7.4E-13 1.6E-17 126.5 17.3 159 58-309 6-176 (187)
211 TIGR00483 EF-1_alpha translati 99.5 1.3E-13 2.8E-18 150.8 13.4 159 60-304 5-200 (426)
212 KOG1489|consensus 99.5 1.6E-13 3.5E-18 140.4 12.7 163 63-308 197-364 (366)
213 cd04166 CysN_ATPS CysN_ATPS su 99.5 1.7E-13 3.8E-18 135.5 12.2 151 64-302 1-185 (208)
214 cd04167 Snu114p Snu114p subfam 99.5 2.2E-13 4.7E-18 135.1 12.4 112 64-235 2-136 (213)
215 TIGR03680 eif2g_arch translati 99.5 2.3E-13 5E-18 148.0 13.7 103 176-310 91-195 (406)
216 PRK12317 elongation factor 1-a 99.5 3.1E-13 6.7E-18 147.8 14.2 159 60-304 4-198 (425)
217 PF10662 PduV-EutP: Ethanolami 99.5 8.5E-13 1.8E-17 122.9 13.5 140 64-307 3-142 (143)
218 cd04168 TetM_like Tet(M)-like 99.5 1.3E-12 2.9E-17 132.1 15.7 185 64-310 1-234 (237)
219 KOG0074|consensus 99.5 3.5E-13 7.6E-18 123.1 10.2 160 60-309 15-177 (185)
220 PRK10218 GTP-binding protein; 99.5 1.6E-12 3.5E-17 147.3 17.9 160 61-310 4-194 (607)
221 TIGR01394 TypA_BipA GTP-bindin 99.4 9.2E-13 2E-17 149.2 15.7 158 64-311 3-191 (594)
222 PRK04000 translation initiatio 99.4 7.6E-13 1.6E-17 144.2 14.3 164 58-310 5-200 (411)
223 COG1084 Predicted GTPase [Gene 99.4 3.7E-12 8E-17 131.5 17.4 173 56-312 162-337 (346)
224 COG0370 FeoB Fe2+ transport sy 99.4 1.3E-12 2.7E-17 146.0 15.0 160 62-312 3-165 (653)
225 cd04165 GTPBP1_like GTPBP1-lik 99.4 2.4E-12 5.2E-17 129.2 15.5 120 176-307 95-219 (224)
226 COG0218 Predicted GTPase [Gene 99.4 4.4E-12 9.6E-17 123.5 16.3 170 60-311 22-197 (200)
227 PRK10512 selenocysteinyl-tRNA- 99.4 2.2E-12 4.7E-17 146.8 16.5 156 64-310 2-165 (614)
228 cd01899 Ygr210 Ygr210 subfamil 99.4 4.7E-12 1E-16 133.3 17.4 56 65-120 1-79 (318)
229 cd01884 EF_Tu EF-Tu subfamily. 99.4 6.6E-12 1.4E-16 123.4 15.9 113 62-236 2-132 (195)
230 cd04104 p47_IIGP_like p47 (47- 99.4 3.6E-12 7.7E-17 125.1 13.3 173 62-313 1-186 (197)
231 COG0536 Obg Predicted GTPase [ 99.4 3.1E-12 6.8E-17 132.6 13.1 170 64-314 161-336 (369)
232 PF01926 MMR_HSR1: 50S ribosom 99.4 7.7E-12 1.7E-16 111.7 12.9 114 64-231 1-116 (116)
233 COG1163 DRG Predicted GTPase [ 99.4 1.4E-11 3E-16 127.0 16.2 62 60-123 61-123 (365)
234 COG3596 Predicted GTPase [Gene 99.4 3.2E-12 6.9E-17 129.3 10.9 183 60-311 37-222 (296)
235 cd01883 EF1_alpha Eukaryotic e 99.3 4.3E-12 9.4E-17 126.6 11.3 113 64-236 1-151 (219)
236 KOG0072|consensus 99.3 1.9E-12 4.1E-17 118.8 5.7 159 61-311 17-179 (182)
237 PRK09602 translation-associate 99.3 5.6E-11 1.2E-15 128.7 17.4 58 63-120 2-82 (396)
238 PRK12735 elongation factor Tu; 99.3 2.9E-11 6.3E-16 131.2 15.0 161 59-309 9-201 (396)
239 KOG0410|consensus 99.3 4.2E-12 9.1E-17 130.3 7.7 161 59-311 175-341 (410)
240 cd04169 RF3 RF3 subfamily. Pe 99.3 9.1E-11 2E-15 120.9 16.7 115 63-237 3-138 (267)
241 PRK12736 elongation factor Tu; 99.3 7.9E-11 1.7E-15 127.7 16.1 116 60-237 10-143 (394)
242 CHL00071 tufA elongation facto 99.3 8.6E-11 1.9E-15 128.1 16.2 117 59-237 9-143 (409)
243 cd01850 CDC_Septin CDC/Septin. 99.3 2.3E-11 5E-16 125.9 11.1 61 61-121 3-74 (276)
244 PRK00741 prfC peptide chain re 99.3 3.3E-11 7.2E-16 134.9 12.6 118 60-237 8-146 (526)
245 cd01885 EF2 EF2 (for archaea a 99.2 7.7E-11 1.7E-15 118.2 13.7 112 64-236 2-139 (222)
246 TIGR00485 EF-Tu translation el 99.2 1.1E-10 2.4E-15 126.5 15.8 116 60-237 10-143 (394)
247 KOG0462|consensus 99.2 9.6E-11 2.1E-15 127.3 14.8 160 60-310 58-234 (650)
248 PRK13351 elongation factor G; 99.2 1.1E-10 2.4E-15 135.1 15.8 114 61-237 7-140 (687)
249 cd04170 EF-G_bact Elongation f 99.2 5.9E-11 1.3E-15 121.9 11.7 112 64-237 1-131 (268)
250 TIGR00503 prfC peptide chain r 99.2 3.2E-10 7E-15 127.0 17.7 117 60-236 9-146 (527)
251 PRK05124 cysN sulfate adenylyl 99.2 1.3E-10 2.9E-15 128.7 14.4 156 60-303 25-217 (474)
252 cd01886 EF-G Elongation factor 99.2 2.2E-10 4.7E-15 118.3 14.2 112 64-237 1-131 (270)
253 TIGR02034 CysN sulfate adenyly 99.2 1.7E-10 3.7E-15 125.6 13.8 96 176-302 91-188 (406)
254 PLN03127 Elongation factor Tu; 99.2 5.1E-10 1.1E-14 123.2 17.5 116 60-237 59-192 (447)
255 KOG0090|consensus 99.2 3.3E-11 7.1E-16 117.6 6.7 186 63-309 39-237 (238)
256 PF09439 SRPRB: Signal recogni 99.2 3.4E-11 7.3E-16 116.8 6.8 117 63-237 4-127 (181)
257 PLN03126 Elongation factor Tu; 99.2 7.2E-10 1.6E-14 122.8 17.8 118 58-237 77-212 (478)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 4.7E-10 1E-14 109.8 14.5 176 63-312 1-185 (196)
259 smart00010 small_GTPase Small 99.2 1.2E-10 2.6E-15 103.7 9.4 49 186-237 44-92 (124)
260 PRK00049 elongation factor Tu; 99.2 4.3E-10 9.4E-15 122.1 15.4 115 60-236 10-142 (396)
261 KOG0077|consensus 99.2 1.1E-10 2.4E-15 109.7 8.8 115 61-237 19-136 (193)
262 KOG1490|consensus 99.2 2.2E-10 4.8E-15 123.3 12.1 177 58-315 164-345 (620)
263 PLN00043 elongation factor 1-a 99.1 5.8E-10 1.3E-14 122.8 15.5 155 60-301 5-203 (447)
264 PRK05506 bifunctional sulfate 99.1 3.2E-10 7E-15 130.0 14.0 57 176-236 115-171 (632)
265 COG0532 InfB Translation initi 99.1 1.1E-09 2.5E-14 119.6 16.4 166 61-312 4-171 (509)
266 KOG1145|consensus 99.1 1.4E-09 3.1E-14 118.2 15.7 165 59-312 150-317 (683)
267 COG0481 LepA Membrane GTPase L 99.1 2.2E-09 4.8E-14 115.2 15.4 159 61-310 8-185 (603)
268 PRK12739 elongation factor G; 99.1 4.1E-09 8.9E-14 122.2 18.8 116 60-237 6-140 (691)
269 TIGR00157 ribosome small subun 99.1 2.7E-10 5.8E-15 115.9 7.6 97 175-308 23-120 (245)
270 TIGR00484 EF-G translation elo 99.1 1.9E-09 4.1E-14 124.9 15.1 115 61-237 9-142 (689)
271 PTZ00258 GTP-binding protein; 99.0 3.6E-09 7.8E-14 114.0 15.8 61 60-120 19-95 (390)
272 PTZ00141 elongation factor 1- 99.0 2.4E-09 5.1E-14 118.0 14.3 115 60-235 5-158 (446)
273 PRK00007 elongation factor G; 99.0 5.3E-09 1.1E-13 121.2 16.9 116 60-237 8-142 (693)
274 PTZ00327 eukaryotic translatio 99.0 3.7E-09 8.1E-14 116.5 14.8 103 176-310 128-232 (460)
275 PRK09866 hypothetical protein; 99.0 6.8E-09 1.5E-13 116.2 16.7 93 182-308 252-350 (741)
276 KOG1532|consensus 99.0 5.3E-10 1.2E-14 112.8 7.0 115 190-315 149-268 (366)
277 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 2.3E-09 5.1E-14 108.1 11.3 169 64-310 1-175 (232)
278 cd01853 Toc34_like Toc34-like 99.0 9E-09 1.9E-13 105.1 14.4 61 58-120 27-89 (249)
279 PRK14845 translation initiatio 99.0 6.5E-09 1.4E-13 123.5 14.7 53 176-236 537-592 (1049)
280 TIGR00490 aEF-2 translation el 98.9 4.6E-09 1E-13 122.2 12.6 117 60-236 17-152 (720)
281 cd00066 G-alpha G protein alph 98.9 1.5E-08 3.2E-13 107.0 15.3 123 176-313 172-313 (317)
282 PRK12740 elongation factor G; 98.9 1.4E-08 3.1E-13 117.3 15.9 57 176-237 71-127 (668)
283 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.2E-08 6.9E-13 103.4 16.4 72 40-120 23-96 (313)
284 PRK13768 GTPase; Provisional 98.9 6.6E-09 1.4E-13 106.3 10.6 113 189-310 129-246 (253)
285 COG4917 EutP Ethanolamine util 98.9 6.3E-09 1.4E-13 93.9 8.6 141 64-308 3-143 (148)
286 KOG0705|consensus 98.9 5.1E-09 1.1E-13 113.7 9.2 166 60-315 28-193 (749)
287 PRK09601 GTP-binding protein Y 98.8 6.8E-08 1.5E-12 103.2 16.0 58 63-120 3-76 (364)
288 TIGR00101 ureG urease accessor 98.8 1.8E-08 3.8E-13 99.5 10.6 81 189-311 113-196 (199)
289 KOG1707|consensus 98.8 7E-08 1.5E-12 106.1 13.4 163 57-311 420-583 (625)
290 KOG1486|consensus 98.8 2.1E-07 4.5E-12 93.2 15.4 62 60-123 60-122 (364)
291 smart00275 G_alpha G protein a 98.7 9.9E-08 2.1E-12 101.8 13.7 122 176-313 195-336 (342)
292 TIGR02836 spore_IV_A stage IV 98.7 1.9E-07 4.2E-12 100.2 15.3 142 61-234 16-192 (492)
293 PRK09435 membrane ATPase/prote 98.7 7.3E-08 1.6E-12 102.1 12.0 91 186-314 167-263 (332)
294 cd01882 BMS1 Bms1. Bms1 is an 98.7 2.4E-07 5.2E-12 93.1 14.5 111 60-237 37-148 (225)
295 PF04548 AIG1: AIG1 family; I 98.7 3.5E-07 7.6E-12 91.0 14.3 179 63-314 1-189 (212)
296 PRK07560 elongation factor EF- 98.7 5E-07 1.1E-11 105.6 16.9 117 60-236 18-153 (731)
297 COG5256 TEF1 Translation elong 98.7 1.5E-07 3.2E-12 100.5 11.3 25 60-84 5-29 (428)
298 TIGR00750 lao LAO/AO transport 98.6 2.7E-07 5.9E-12 96.7 13.0 89 186-311 145-238 (300)
299 PF00350 Dynamin_N: Dynamin fa 98.6 3E-07 6.5E-12 86.9 11.3 52 177-232 117-168 (168)
300 PF03029 ATP_bind_1: Conserved 98.6 2.1E-08 4.5E-13 101.7 3.5 106 188-310 122-236 (238)
301 TIGR00073 hypB hydrogenase acc 98.6 7.2E-08 1.6E-12 95.4 6.6 83 188-310 123-206 (207)
302 PLN00116 translation elongatio 98.6 3E-07 6.5E-12 108.8 11.9 55 176-235 109-163 (843)
303 PTZ00416 elongation factor 2; 98.6 3.5E-07 7.6E-12 108.1 12.2 116 60-235 17-157 (836)
304 TIGR00993 3a0901s04IAP86 chlor 98.5 1E-06 2.2E-11 99.4 14.9 132 59-237 115-251 (763)
305 COG0012 Predicted GTPase, prob 98.5 2.1E-06 4.6E-11 91.0 15.5 62 62-123 2-80 (372)
306 cd01900 YchF YchF subfamily. 98.5 5.6E-07 1.2E-11 93.1 10.8 56 65-120 1-72 (274)
307 cd01855 YqeH YqeH. YqeH is an 98.5 4.4E-07 9.5E-12 88.3 9.0 94 178-310 24-124 (190)
308 KOG1487|consensus 98.5 4.7E-07 1E-11 91.1 8.6 197 62-310 59-280 (358)
309 smart00053 DYNc Dynamin, GTPas 98.5 2.1E-06 4.6E-11 87.2 13.1 57 177-237 150-207 (240)
310 KOG1144|consensus 98.4 9.6E-07 2.1E-11 99.1 10.7 179 58-313 471-689 (1064)
311 cd01859 MJ1464 MJ1464. This f 98.4 9.6E-07 2.1E-11 83.0 9.1 93 179-310 3-95 (156)
312 COG5257 GCD11 Translation init 98.4 9.8E-07 2.1E-11 91.3 9.3 92 187-310 108-201 (415)
313 PF00735 Septin: Septin; Inte 98.4 7.7E-07 1.7E-11 92.5 8.4 61 62-122 4-75 (281)
314 KOG3905|consensus 98.4 5.2E-06 1.1E-10 86.0 13.5 28 283-310 262-289 (473)
315 PRK10463 hydrogenase nickel in 98.4 3.3E-07 7.2E-12 95.1 4.7 28 283-310 261-288 (290)
316 PF05049 IIGP: Interferon-indu 98.3 2.6E-06 5.7E-11 91.3 11.2 25 60-84 33-57 (376)
317 PF05783 DLIC: Dynein light in 98.3 7.6E-06 1.7E-10 90.6 14.6 28 283-310 236-263 (472)
318 PRK12289 GTPase RsgA; Reviewed 98.3 2E-06 4.4E-11 92.0 9.2 93 180-310 81-174 (352)
319 COG1703 ArgK Putative periplas 98.3 1.2E-06 2.6E-11 90.3 7.0 90 186-313 162-256 (323)
320 KOG0468|consensus 98.3 2.6E-06 5.7E-11 94.7 10.0 119 58-236 124-263 (971)
321 KOG0461|consensus 98.3 1.3E-05 2.8E-10 83.7 14.0 61 60-120 5-80 (522)
322 COG0378 HypB Ni2+-binding GTPa 98.3 3.1E-06 6.8E-11 82.5 8.7 82 189-310 118-200 (202)
323 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.7E-06 5.8E-11 88.7 8.7 85 185-307 75-160 (287)
324 PF03308 ArgK: ArgK protein; 98.2 1.4E-06 3E-11 88.6 5.5 91 186-314 140-233 (266)
325 KOG0458|consensus 98.2 9.1E-06 2E-10 89.9 12.0 25 60-84 175-199 (603)
326 TIGR03597 GTPase_YqeH ribosome 98.2 4E-06 8.7E-11 90.2 8.8 95 175-309 50-151 (360)
327 COG1217 TypA Predicted membran 98.2 1.2E-05 2.7E-10 86.7 11.9 160 62-310 5-194 (603)
328 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 4.1E-06 8.8E-11 77.7 6.5 52 64-120 85-138 (141)
329 KOG0082|consensus 98.1 3.6E-05 7.8E-10 81.8 14.4 119 179-313 209-346 (354)
330 PRK00098 GTPase RsgA; Reviewed 98.1 4.4E-06 9.5E-11 87.6 7.4 84 186-306 78-162 (298)
331 COG2895 CysN GTPases - Sulfate 98.1 1.3E-05 2.8E-10 84.1 9.8 153 60-300 4-192 (431)
332 KOG2486|consensus 98.1 5.3E-06 1.1E-10 84.6 6.7 61 58-120 132-193 (320)
333 PRK12288 GTPase RsgA; Reviewed 98.1 1.3E-05 2.8E-10 85.8 9.7 89 186-309 118-206 (347)
334 KOG3886|consensus 98.0 7.5E-06 1.6E-10 81.4 5.6 122 63-237 5-131 (295)
335 KOG1954|consensus 98.0 6.2E-05 1.4E-09 79.4 11.8 130 60-237 56-226 (532)
336 KOG2655|consensus 98.0 7.2E-05 1.6E-09 79.6 12.5 64 59-122 18-91 (366)
337 COG3276 SelB Selenocysteine-sp 98.0 6.7E-05 1.5E-09 81.0 12.4 154 64-311 2-162 (447)
338 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.1E-05 4.6E-10 74.1 7.4 55 61-120 101-157 (157)
339 COG5019 CDC3 Septin family pro 97.9 8E-05 1.7E-09 78.9 12.3 63 60-122 21-94 (373)
340 TIGR00092 GTP-binding protein 97.9 7.5E-05 1.6E-09 80.2 11.5 59 63-121 3-78 (368)
341 cd01858 NGP_1 NGP-1. Autoanti 97.9 4E-05 8.8E-10 72.2 8.5 90 185-310 5-94 (157)
342 cd01856 YlqF YlqF. Proteins o 97.9 2.4E-05 5.2E-10 74.9 7.0 56 60-120 113-170 (171)
343 COG0480 FusA Translation elong 97.9 0.0001 2.2E-09 85.3 13.0 117 60-237 8-143 (697)
344 cd01849 YlqF_related_GTPase Yl 97.9 4.5E-05 9.8E-10 71.8 8.3 84 190-310 1-84 (155)
345 cd04178 Nucleostemin_like Nucl 97.9 3.3E-05 7.1E-10 74.6 7.2 56 60-120 115-172 (172)
346 TIGR03596 GTPase_YlqF ribosome 97.8 5.2E-05 1.1E-09 78.6 7.5 56 60-120 116-173 (276)
347 KOG1491|consensus 97.8 5.5E-05 1.2E-09 79.2 7.3 62 61-122 19-96 (391)
348 cd01856 YlqF YlqF. Proteins o 97.8 0.0001 2.3E-09 70.5 8.7 89 181-310 12-100 (171)
349 KOG1547|consensus 97.7 0.00014 3E-09 72.9 9.4 63 60-122 44-116 (336)
350 cd01855 YqeH YqeH. YqeH is an 97.7 3.4E-05 7.5E-10 75.0 5.2 54 62-120 127-190 (190)
351 PRK09563 rbgA GTPase YlqF; Rev 97.7 8.8E-05 1.9E-09 77.3 8.2 56 60-120 119-176 (287)
352 cd01859 MJ1464 MJ1464. This f 97.7 0.0001 2.2E-09 69.2 7.4 56 61-120 100-156 (156)
353 COG4108 PrfC Peptide chain rel 97.6 0.00056 1.2E-08 73.9 12.5 117 61-237 11-148 (528)
354 COG1161 Predicted GTPases [Gen 97.6 0.0001 2.2E-09 78.2 6.8 56 60-120 130-187 (322)
355 KOG0448|consensus 97.6 0.00035 7.6E-09 78.8 10.8 154 61-237 108-276 (749)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00016 3.4E-09 67.1 6.4 48 185-237 8-57 (141)
357 COG5258 GTPBP1 GTPase [General 97.5 0.00061 1.3E-08 72.5 11.1 58 176-238 212-271 (527)
358 PRK13796 GTPase YqeH; Provisio 97.5 0.00032 6.9E-09 75.7 9.3 93 176-309 57-157 (365)
359 cd01849 YlqF_related_GTPase Yl 97.5 0.00025 5.4E-09 66.7 7.2 56 60-120 98-155 (155)
360 KOG0447|consensus 97.5 0.001 2.2E-08 73.2 12.7 63 172-237 432-494 (980)
361 TIGR03596 GTPase_YlqF ribosome 97.5 0.00047 1E-08 71.5 9.5 89 183-312 16-104 (276)
362 cd01851 GBP Guanylate-binding 97.4 0.0022 4.7E-08 64.6 13.5 61 60-120 5-70 (224)
363 TIGR03348 VI_IcmF type VI secr 97.4 0.0005 1.1E-08 84.6 10.2 48 188-236 201-257 (1169)
364 PRK01889 GTPase RsgA; Reviewed 97.4 0.00071 1.5E-08 72.8 9.6 84 186-307 110-193 (356)
365 PF03193 DUF258: Protein of un 97.4 0.0002 4.4E-09 68.5 4.7 22 64-85 37-58 (161)
366 COG0050 TufB GTPases - transla 97.3 0.0015 3.3E-08 67.5 10.6 113 60-237 10-143 (394)
367 PRK12288 GTPase RsgA; Reviewed 97.3 0.00033 7.1E-09 75.1 6.0 23 64-86 207-229 (347)
368 PRK09563 rbgA GTPase YlqF; Rev 97.2 0.0014 3.1E-08 68.3 9.6 89 183-312 19-107 (287)
369 TIGR00157 ribosome small subun 97.2 0.00074 1.6E-08 68.9 7.2 22 64-85 122-143 (245)
370 PRK12289 GTPase RsgA; Reviewed 97.2 0.00049 1.1E-08 73.9 6.0 52 64-120 174-234 (352)
371 PRK13796 GTPase YqeH; Provisio 97.2 0.0005 1.1E-08 74.2 5.7 53 63-120 161-220 (365)
372 KOG1424|consensus 97.2 0.00063 1.4E-08 74.8 6.2 56 61-120 313-369 (562)
373 COG1618 Predicted nucleotide k 97.1 0.02 4.4E-07 54.7 15.1 56 61-118 4-59 (179)
374 TIGR03597 GTPase_YqeH ribosome 97.1 0.00054 1.2E-08 73.8 5.0 53 63-120 155-214 (360)
375 KOG3859|consensus 97.1 0.0009 2E-08 68.5 6.0 62 60-121 40-106 (406)
376 cd03112 CobW_like The function 97.0 0.0028 6.1E-08 60.2 8.2 22 64-85 2-23 (158)
377 COG1162 Predicted GTPases [Gen 97.0 0.0017 3.7E-08 67.8 7.1 53 64-121 166-227 (301)
378 KOG1143|consensus 97.0 0.0011 2.3E-08 70.3 5.6 103 189-303 275-380 (591)
379 KOG0467|consensus 96.9 0.0047 1E-07 70.6 10.2 115 60-234 7-136 (887)
380 TIGR00064 ftsY signal recognit 96.8 0.0058 1.3E-07 63.4 9.5 22 62-83 72-93 (272)
381 COG5192 BMS1 GTP-binding prote 96.8 0.0056 1.2E-07 67.8 9.5 117 55-237 62-178 (1077)
382 cd01854 YjeQ_engC YjeQ/EngC. 96.8 0.0011 2.4E-08 69.2 4.0 24 63-86 162-185 (287)
383 PRK10416 signal recognition pa 96.8 0.0075 1.6E-07 64.0 10.3 24 61-84 113-136 (318)
384 PRK14974 cell division protein 96.7 0.0053 1.1E-07 65.6 8.4 23 61-83 139-161 (336)
385 PRK00098 GTPase RsgA; Reviewed 96.6 0.0034 7.4E-08 65.9 6.3 24 63-86 165-188 (298)
386 PRK13695 putative NTPase; Prov 96.6 0.02 4.2E-07 54.9 10.7 23 63-85 1-23 (174)
387 KOG3887|consensus 96.5 0.0083 1.8E-07 60.5 7.7 170 63-313 28-204 (347)
388 PF00503 G-alpha: G-protein al 96.4 0.016 3.5E-07 63.0 10.0 117 180-310 251-389 (389)
389 KOG0466|consensus 96.3 0.0061 1.3E-07 63.3 5.7 86 189-310 149-240 (466)
390 KOG2484|consensus 96.3 0.003 6.6E-08 67.7 3.7 57 60-120 250-307 (435)
391 KOG4273|consensus 96.3 0.012 2.5E-07 59.6 7.4 46 189-237 79-124 (418)
392 TIGR01425 SRP54_euk signal rec 96.2 0.018 3.8E-07 63.5 9.0 22 62-83 100-121 (429)
393 PF06858 NOG1: Nucleolar GTP-b 96.2 0.015 3.3E-07 46.0 5.9 43 189-233 14-58 (58)
394 PRK14722 flhF flagellar biosyn 96.1 0.017 3.8E-07 62.5 8.1 24 62-85 137-160 (374)
395 cd03114 ArgK-like The function 96.1 0.022 4.7E-07 53.7 7.8 20 65-84 2-21 (148)
396 PRK12727 flagellar biosynthesi 96.0 0.03 6.5E-07 63.0 9.9 23 62-84 350-372 (559)
397 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.035 7.5E-07 46.3 8.0 20 65-84 2-21 (99)
398 COG1419 FlhF Flagellar GTP-bin 95.9 0.029 6.4E-07 60.8 8.5 26 62-87 203-228 (407)
399 KOG2485|consensus 95.8 0.016 3.5E-07 60.5 5.9 59 60-120 141-206 (335)
400 COG0523 Putative GTPases (G3E 95.7 0.16 3.6E-06 54.0 13.5 23 65-87 4-26 (323)
401 cd00009 AAA The AAA+ (ATPases 95.7 0.057 1.2E-06 48.0 8.6 24 63-86 20-43 (151)
402 KOG0463|consensus 95.7 0.026 5.7E-07 60.1 7.1 29 59-87 130-158 (641)
403 PF09547 Spore_IV_A: Stage IV 95.6 0.052 1.1E-06 59.2 9.2 60 61-120 16-101 (492)
404 COG1162 Predicted GTPases [Gen 95.6 0.059 1.3E-06 56.5 9.1 90 186-311 77-167 (301)
405 PRK11889 flhF flagellar biosyn 95.4 0.029 6.2E-07 61.1 6.5 23 62-84 241-263 (436)
406 cd03115 SRP The signal recogni 95.4 0.07 1.5E-06 50.8 8.4 21 64-84 2-22 (173)
407 PF05621 TniB: Bacterial TniB 95.4 0.076 1.7E-06 55.7 9.2 51 181-231 136-189 (302)
408 PRK11537 putative GTP-binding 95.3 0.23 5.1E-06 52.7 12.9 22 64-85 6-27 (318)
409 PF13207 AAA_17: AAA domain; P 95.3 0.015 3.2E-07 51.8 3.3 21 64-84 1-21 (121)
410 COG3523 IcmF Type VI protein s 95.3 0.039 8.6E-07 67.2 7.6 50 187-237 213-271 (1188)
411 KOG0460|consensus 95.2 0.098 2.1E-06 55.4 9.2 25 59-83 51-75 (449)
412 PRK14721 flhF flagellar biosyn 95.2 0.058 1.3E-06 59.3 8.0 23 62-84 191-213 (420)
413 cd03111 CpaE_like This protein 95.1 0.093 2E-06 46.4 7.6 47 184-231 60-106 (106)
414 KOG2423|consensus 95.0 0.011 2.5E-07 63.2 1.7 29 60-88 305-333 (572)
415 PRK00771 signal recognition pa 94.9 0.082 1.8E-06 58.5 8.1 23 61-83 94-116 (437)
416 PF03266 NTPase_1: NTPase; In 94.8 0.059 1.3E-06 51.9 6.0 52 64-117 1-52 (168)
417 cd02042 ParA ParA and ParB of 94.7 0.12 2.6E-06 44.8 7.2 28 184-212 57-84 (104)
418 cd02038 FleN-like FleN is a me 94.6 0.12 2.6E-06 47.8 7.4 49 184-235 62-110 (139)
419 KOG0085|consensus 94.6 0.024 5.2E-07 56.9 2.7 24 60-83 37-60 (359)
420 PRK07261 topology modulation p 94.4 0.032 6.8E-07 53.7 3.2 21 64-84 2-22 (171)
421 PF13671 AAA_33: AAA domain; P 94.4 0.031 6.7E-07 51.1 3.0 19 65-83 2-20 (143)
422 PF13521 AAA_28: AAA domain; P 94.4 0.027 5.8E-07 53.3 2.7 22 64-85 1-22 (163)
423 PRK08118 topology modulation p 94.4 0.031 6.8E-07 53.6 3.1 22 64-85 3-24 (167)
424 KOG1534|consensus 94.3 0.1 2.2E-06 52.0 6.5 23 62-84 3-25 (273)
425 PRK14738 gmk guanylate kinase; 94.3 0.055 1.2E-06 53.6 4.8 27 59-85 10-36 (206)
426 COG1116 TauB ABC-type nitrate/ 94.3 0.033 7.2E-07 56.7 3.0 22 64-85 31-52 (248)
427 KOG0464|consensus 94.2 0.021 4.5E-07 61.5 1.5 117 61-237 36-169 (753)
428 COG0563 Adk Adenylate kinase a 94.2 0.037 8E-07 53.9 3.1 22 64-85 2-23 (178)
429 cd04178 Nucleostemin_like Nucl 94.1 0.075 1.6E-06 51.3 5.1 45 190-237 1-45 (172)
430 KOG0780|consensus 94.0 0.075 1.6E-06 57.1 5.2 25 59-83 98-122 (483)
431 cd03222 ABC_RNaseL_inhibitor T 93.9 0.82 1.8E-05 44.4 11.9 22 64-85 27-48 (177)
432 PRK12726 flagellar biosynthesi 93.9 0.19 4.1E-06 54.7 8.0 23 62-84 206-228 (407)
433 PF13555 AAA_29: P-loop contai 93.9 0.056 1.2E-06 43.6 3.0 20 64-83 25-44 (62)
434 PRK14723 flhF flagellar biosyn 93.8 0.13 2.8E-06 60.4 7.1 23 63-85 186-208 (767)
435 smart00382 AAA ATPases associa 93.6 0.062 1.3E-06 47.1 3.3 26 63-88 3-28 (148)
436 PF00005 ABC_tran: ABC transpo 93.6 0.055 1.2E-06 49.2 3.0 22 64-85 13-34 (137)
437 cd02019 NK Nucleoside/nucleoti 93.6 0.064 1.4E-06 43.6 3.1 21 65-85 2-22 (69)
438 PF13238 AAA_18: AAA domain; P 93.6 0.058 1.3E-06 47.9 3.0 21 65-85 1-21 (129)
439 cd00071 GMPK Guanosine monopho 93.5 0.059 1.3E-06 50.0 3.0 21 65-85 2-22 (137)
440 PRK14737 gmk guanylate kinase; 93.5 0.062 1.4E-06 52.5 3.4 23 63-85 5-27 (186)
441 PRK01889 GTPase RsgA; Reviewed 93.4 0.064 1.4E-06 57.8 3.5 23 63-85 196-218 (356)
442 COG3640 CooC CO dehydrogenase 93.4 0.32 7E-06 49.3 8.1 64 165-235 135-198 (255)
443 COG1136 SalX ABC-type antimicr 93.4 0.058 1.3E-06 54.4 2.9 21 64-84 33-53 (226)
444 TIGR02322 phosphon_PhnN phosph 93.3 0.062 1.3E-06 51.4 3.0 22 64-85 3-24 (179)
445 PRK04195 replication factor C 93.3 0.69 1.5E-05 51.9 11.6 23 63-85 40-62 (482)
446 TIGR00959 ffh signal recogniti 93.2 0.17 3.7E-06 55.9 6.5 23 61-83 98-120 (428)
447 PRK06217 hypothetical protein; 93.2 0.073 1.6E-06 51.5 3.3 23 63-85 2-24 (183)
448 PRK10078 ribose 1,5-bisphospho 93.2 0.075 1.6E-06 51.5 3.3 22 64-85 4-25 (186)
449 TIGR03263 guanyl_kin guanylate 93.1 0.074 1.6E-06 50.8 3.1 22 64-85 3-24 (180)
450 PF03205 MobB: Molybdopterin g 93.1 0.08 1.7E-06 49.4 3.1 22 64-85 2-23 (140)
451 PF00004 AAA: ATPase family as 93.1 0.078 1.7E-06 47.3 3.0 21 65-85 1-21 (132)
452 COG0194 Gmk Guanylate kinase [ 93.0 0.061 1.3E-06 52.6 2.4 24 63-86 5-28 (191)
453 PRK08233 hypothetical protein; 93.0 0.093 2E-06 50.0 3.7 24 62-85 3-26 (182)
454 PRK10867 signal recognition pa 93.0 0.2 4.3E-06 55.5 6.7 23 61-83 99-121 (433)
455 KOG0469|consensus 93.0 0.18 3.9E-06 55.8 6.1 55 176-235 109-163 (842)
456 COG1120 FepC ABC-type cobalami 92.8 0.65 1.4E-05 47.9 9.6 21 64-84 30-50 (258)
457 PRK14530 adenylate kinase; Pro 92.8 0.096 2.1E-06 52.0 3.4 22 63-84 4-25 (215)
458 TIGR00235 udk uridine kinase. 92.7 0.11 2.4E-06 51.3 3.8 25 60-84 4-28 (207)
459 PRK05480 uridine/cytidine kina 92.6 0.12 2.7E-06 50.8 4.0 26 60-85 4-29 (209)
460 COG3840 ThiQ ABC-type thiamine 92.6 0.098 2.1E-06 51.3 3.0 23 63-85 26-48 (231)
461 cd00820 PEPCK_HprK Phosphoenol 92.6 0.096 2.1E-06 46.8 2.8 21 63-83 16-36 (107)
462 PLN03025 replication factor C 92.6 0.91 2E-05 48.0 10.7 25 64-88 36-60 (319)
463 COG1126 GlnQ ABC-type polar am 92.5 0.098 2.1E-06 52.4 3.1 22 63-84 29-50 (240)
464 PF07728 AAA_5: AAA domain (dy 92.5 0.099 2.1E-06 47.8 3.0 21 64-84 1-21 (139)
465 TIGR01360 aden_kin_iso1 adenyl 92.5 0.096 2.1E-06 50.1 3.0 22 63-84 4-25 (188)
466 COG3839 MalK ABC-type sugar tr 92.4 0.094 2E-06 56.0 3.0 22 64-85 31-52 (338)
467 KOG0459|consensus 92.4 0.16 3.4E-06 55.0 4.6 25 59-83 76-100 (501)
468 PRK03839 putative kinase; Prov 92.4 0.11 2.3E-06 50.0 3.1 22 64-85 2-23 (180)
469 cd02023 UMPK Uridine monophosp 92.3 0.1 2.2E-06 50.9 2.9 21 65-85 2-22 (198)
470 cd02036 MinD Bacterial cell di 92.3 1.3 2.9E-05 41.7 10.5 48 184-235 80-127 (179)
471 PRK10751 molybdopterin-guanine 92.2 0.14 3.1E-06 49.7 3.8 24 62-85 6-29 (173)
472 COG3845 ABC-type uncharacteriz 92.2 0.59 1.3E-05 51.9 8.8 71 162-235 132-203 (501)
473 PF13401 AAA_22: AAA domain; P 92.2 0.12 2.5E-06 46.4 2.9 48 180-231 77-125 (131)
474 PF13191 AAA_16: AAA ATPase do 92.1 0.11 2.4E-06 49.3 2.8 22 63-84 25-46 (185)
475 cd03238 ABC_UvrA The excision 92.0 0.12 2.7E-06 50.1 3.1 21 63-83 22-42 (176)
476 PRK00300 gmk guanylate kinase; 92.0 0.12 2.5E-06 50.6 3.0 23 63-85 6-28 (205)
477 cd01130 VirB11-like_ATPase Typ 91.8 0.14 3.1E-06 49.7 3.2 23 63-85 26-48 (186)
478 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.7 0.14 3.1E-06 50.5 3.3 22 64-85 32-53 (218)
479 PRK05416 glmZ(sRNA)-inactivati 91.7 1.6 3.4E-05 45.8 11.1 43 189-235 55-97 (288)
480 PF05729 NACHT: NACHT domain 91.7 0.14 3E-06 47.4 2.9 21 65-85 3-23 (166)
481 cd03243 ABC_MutS_homologs The 91.7 0.58 1.3E-05 45.9 7.5 23 63-85 30-52 (202)
482 TIGR00960 3a0501s02 Type II (G 91.6 0.15 3.2E-06 50.5 3.2 22 64-85 31-52 (216)
483 COG3638 ABC-type phosphate/pho 91.6 0.14 3E-06 52.0 3.0 21 64-84 32-52 (258)
484 COG4525 TauB ABC-type taurine 91.6 0.14 3.1E-06 50.7 2.9 21 64-84 33-53 (259)
485 PRK14532 adenylate kinase; Pro 91.5 0.15 3.3E-06 49.2 3.2 21 64-84 2-22 (188)
486 cd03225 ABC_cobalt_CbiO_domain 91.5 0.16 3.4E-06 50.0 3.3 22 64-85 29-50 (211)
487 KOG3347|consensus 91.5 0.14 3E-06 48.6 2.6 25 60-84 5-29 (176)
488 PRK14531 adenylate kinase; Pro 91.4 0.17 3.7E-06 48.9 3.4 22 63-84 3-24 (183)
489 PRK13949 shikimate kinase; Pro 91.4 0.16 3.5E-06 48.8 3.1 21 64-84 3-23 (169)
490 cd03261 ABC_Org_Solvent_Resist 91.4 0.16 3.5E-06 50.9 3.3 22 64-85 28-49 (235)
491 cd03226 ABC_cobalt_CbiO_domain 91.4 0.16 3.5E-06 49.8 3.2 22 64-85 28-49 (205)
492 KOG0395|consensus 91.4 0.097 2.1E-06 51.7 1.6 50 336-386 124-173 (196)
493 COG0541 Ffh Signal recognition 91.3 0.48 1E-05 52.0 6.9 25 59-83 97-121 (451)
494 cd03264 ABC_drug_resistance_li 91.3 0.15 3.3E-06 50.1 3.0 22 64-85 27-48 (211)
495 cd01428 ADK Adenylate kinase ( 91.3 0.14 3.1E-06 49.2 2.7 22 64-85 1-22 (194)
496 TIGR03608 L_ocin_972_ABC putat 91.3 0.17 3.7E-06 49.5 3.3 22 64-85 26-47 (206)
497 TIGR02315 ABC_phnC phosphonate 91.3 0.17 3.6E-06 51.0 3.2 22 64-85 30-51 (243)
498 cd01131 PilT Pilus retraction 91.2 0.16 3.4E-06 50.0 3.0 22 64-85 3-24 (198)
499 TIGR01166 cbiO cobalt transpor 91.2 0.16 3.5E-06 49.2 3.0 22 64-85 20-41 (190)
500 cd03265 ABC_DrrA DrrA is the A 91.2 0.18 3.8E-06 50.1 3.3 22 64-85 28-49 (220)
No 1
>KOG3344|consensus
Probab=100.00 E-value=8.8e-49 Score=348.56 Aligned_cols=133 Identities=45% Similarity=0.748 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524 367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 444 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~ 444 (592)
.+||+|||++||||||+++| |.++||++++ +||||+|||||||||||||||||||||||+|||+|||||+|||
T Consensus 13 e~Lfkegv~vakkD~~~~kH~el~vpNL~vik-----aMQSl~SrgYvkeqfaWrH~Yw~LTneGi~yLR~YLhLP~EiV 87 (150)
T KOG3344|consen 13 EYLFKEGVLVAKKDFNLPKHPELEVPNLHVIK-----AMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLREYLHLPPEIV 87 (150)
T ss_pred HHHHHhcceeeccccCCccCcccCCccHHHHH-----HHHHHhhhhhHHhhhhhheeeeeechhHHHHHHHHhcCCcccc
Confidence 47999999999999999964 5555555444 8999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCccCCCC-CCCCCCCCCCccccCCCCCCCCCCCcCCCC-ceeeeeccccCCC
Q psy1524 445 PSTLKRQARTTDASKVPRQMTQR-PDGGRGADDRMSYRKGPQGVDKKADVGAGS-TEVEFKGYGGLAS 510 (592)
Q Consensus 445 p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~yr~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 510 (592)
|+||++ ++|++.+++|.+..++ |+ ...++||++||+++... ++|||+ +++||||.|.+++
T Consensus 88 paTl~~-~rP~~~rpr~~g~e~~~p~-~~~r~dR~~yR~~~~~~----~~gA~s~~~~~frg~g~g~~ 149 (150)
T KOG3344|consen 88 PATLKR-SRPETGRPRPPGLEGRGPA-DGTRGDRDGYRRGPVPP----EGGAGSGTEPQFRGRGFGRP 149 (150)
T ss_pred cchhhc-cCCCCCCCCCCCCCCCCcc-cccccchhhhccCCCCC----CCCCCccccccccccCCCCC
Confidence 999999 6887766665554333 32 11238999999987654 567887 6999999666554
No 2
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=100.00 E-value=4.9e-39 Score=284.04 Aligned_cols=85 Identities=36% Similarity=0.606 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524 367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 444 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~ 444 (592)
.+||+|||++|||||++++| +.++||+++ ++||||+|||||+|||||||||||||||||||||+|||||+|||
T Consensus 14 e~LfkeGVlvakKd~~~~~h~el~vpNL~Vi-----k~mqSL~Srg~Vke~f~WrhyYw~LT~eGieyLR~yL~LP~eiv 88 (124)
T PTZ00034 14 RYLFKEGVIVCKKDPKGPWHPELNVPNLHVM-----MLMRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVF 88 (124)
T ss_pred HHHhhCceEEEecCCCCCCCCccCCccHHHH-----HHHHccccCCceEEEEeeEEEEEEEchHHHHHHHHHhCCCcccC
Confidence 47999999999999999865 444444444 48999999999999999999999999999999999999999999
Q ss_pred ccccccccccCC
Q psy1524 445 PSTLKRQARTTD 456 (592)
Q Consensus 445 p~~~~~~~~~~~ 456 (592)
|+||++++++.+
T Consensus 89 P~T~k~~~~~~~ 100 (124)
T PTZ00034 89 PATHKKKSVNFE 100 (124)
T ss_pred chhhcccccCcc
Confidence 999999866643
No 3
>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.
Probab=100.00 E-value=2.2e-38 Score=269.31 Aligned_cols=83 Identities=48% Similarity=0.875 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCCc
Q psy1524 367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVP 445 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~p 445 (592)
.+||+|||++||||+++++|-+ + ++||+++ ++||||+|||||||||||||||||||||||||||+|||||+||||
T Consensus 11 e~LFkeGVlvakKD~~~~~H~e---l-~vpNL~V~k~mqSL~SrgyVke~faWrh~Yw~LT~eGIeyLR~yL~LP~eivP 86 (95)
T PF03501_consen 11 EYLFKEGVLVAKKDFHMPKHPE---L-NVPNLHVIKAMQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVP 86 (95)
T ss_dssp HHHHHHSEEEEES-TTSCS-TT---T-SSBHHHHHHHHHHHHHCTSEEEEECTTEEEEEE-HHHHHHHHHHC-SSTT--T
T ss_pred HHHhhcceEEEEccCCCCCCCc---c-CCCcHHHHHHHhcccchhhhcCeecceEEEEEEcchhHHHHHHHhCCChhhCc
Confidence 4799999999999999996422 1 4555555 489999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy1524 446 STLKRQAR 453 (592)
Q Consensus 446 ~~~~~~~~ 453 (592)
+||+++++
T Consensus 87 aTlk~~~~ 94 (95)
T PF03501_consen 87 ATLKKSRR 94 (95)
T ss_dssp CCCS-S--
T ss_pred HHhccccC
Confidence 99999754
No 4
>KOG0084|consensus
Probab=100.00 E-value=1.6e-34 Score=275.76 Aligned_cols=172 Identities=30% Similarity=0.491 Sum_probs=161.7
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||+|+.||..+.|.+.|..|++ |+..+++.++|+.++|+||||+|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ---------------- 68 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ---------------- 68 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------------
Confidence 458899999999999999999999999999999999999 999999999999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
|+|+++...||++|++||+|||+|+.+||..+..|+.++.+
T Consensus 69 ---------------------------------------ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~ 109 (205)
T KOG0084|consen 69 ---------------------------------------ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDR 109 (205)
T ss_pred ---------------------------------------HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe-EEEcccCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG-FVEASAKD 295 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~-~~EvSAkt 295 (592)
+ ...++|.+|||||||+.+. +.|+.++++.++. ..+++ |+|+|||+
T Consensus 110 ~-~~~~v~~lLVGNK~Dl~~~-------------------------------~~v~~~~a~~fa~-~~~~~~f~ETSAK~ 156 (205)
T KOG0084|consen 110 Y-ASENVPKLLVGNKCDLTEK-------------------------------RVVSTEEAQEFAD-ELGIPIFLETSAKD 156 (205)
T ss_pred h-ccCCCCeEEEeeccccHhh-------------------------------eecCHHHHHHHHH-hcCCcceeecccCC
Confidence 7 5678899999999999987 8999999999998 55666 99999999
Q ss_pred CccHHHHHHHHHHHHHHhcccC
Q psy1524 296 NTNITQVFKELLVQAKVKYNLS 317 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~~~~ 317 (592)
+.||+++|..|...+..++...
T Consensus 157 ~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 157 STNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred ccCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999997765543
No 5
>KOG0078|consensus
Probab=100.00 E-value=1.4e-32 Score=265.80 Aligned_cols=171 Identities=32% Similarity=0.481 Sum_probs=162.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+++|++|||||+|+.||..+.|...+..|++ |+..+++.+++..+.+++|||+|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ---------------- 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ---------------- 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------------
Confidence 668899999999999999999999999999999999999 999999999999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++|+.+...|+++|+++++|||+++..||+++..|+..+.+
T Consensus 72 ---------------------------------------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e 112 (207)
T KOG0078|consen 72 ---------------------------------------ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDE 112 (207)
T ss_pred ---------------------------------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
+ ...++|++|||||+|+..+ |+|+.++++++|. ..++.|+|||||+|
T Consensus 113 ~-a~~~v~~~LvGNK~D~~~~-------------------------------R~V~~e~ge~lA~-e~G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 113 H-ASDDVVKILVGNKCDLEEK-------------------------------RQVSKERGEALAR-EYGIKFFETSAKTN 159 (207)
T ss_pred h-CCCCCcEEEeecccccccc-------------------------------ccccHHHHHHHHH-HhCCeEEEccccCC
Confidence 7 5679999999999999876 9999999999998 66999999999999
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q psy1524 297 TNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~~~ 316 (592)
.||+++|..|++.++.+...
T Consensus 160 ~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 160 FNIEEAFLSLARDILQKLED 179 (207)
T ss_pred CCHHHHHHHHHHHHHhhcch
Confidence 99999999999999875443
No 6
>KOG0092|consensus
Probab=99.98 E-value=3.3e-32 Score=259.16 Aligned_cols=170 Identities=27% Similarity=0.459 Sum_probs=157.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+++|+.+||||||+-||+.+.|.+...+||+ -+.++.+.+++..++|.||||+|+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ------------------ 64 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ------------------ 64 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc------------------
Confidence 4679999999999999999999999999999999999 788999999999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
|+|.++.++||++|+++|+|||+++.+||..++.|+.+|.+.
T Consensus 65 -------------------------------------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~- 106 (200)
T KOG0092|consen 65 -------------------------------------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ- 106 (200)
T ss_pred -------------------------------------ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999987
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..+++-|.|||||+||.+. |+|..+++..++. ..+..|||+|||||.|
T Consensus 107 ~~~~~vialvGNK~DL~~~-------------------------------R~V~~~ea~~yAe-~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 107 ASPNIVIALVGNKADLLER-------------------------------REVEFEEAQAYAE-SQGLLFFETSAKTGEN 154 (200)
T ss_pred CCCCeEEEEecchhhhhhc-------------------------------ccccHHHHHHHHH-hcCCEEEEEecccccC
Confidence 4477888899999999986 8999999999998 5677899999999999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q psy1524 299 ITQVFKELLVQAKVKYNLS 317 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~~~~ 317 (592)
|+++|..|.+.+.......
T Consensus 155 v~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHHHHHhccCccccc
Confidence 9999999999996554443
No 7
>KOG0094|consensus
Probab=99.98 E-value=6.7e-32 Score=257.06 Aligned_cols=167 Identities=30% Similarity=0.520 Sum_probs=155.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.+.+||+++|+.+|||||||+||+.+.|...|.+||+ |+..+++.+.+..+.|++|||+||
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ------------------ 81 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------------------ 81 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH------------------
Confidence 4459999999999999999999999999999999999 999999999999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
|+|+.+.+.|++++.++|+|||++|..||++...|++.+....
T Consensus 82 -------------------------------------ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~ 124 (221)
T KOG0094|consen 82 -------------------------------------ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRER 124 (221)
T ss_pred -------------------------------------HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999876
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
+..++-|+|||||.||.++ |+++.++++..++ ..+..|+++||+.|+|
T Consensus 125 gs~~viI~LVGnKtDL~dk-------------------------------rqvs~eEg~~kAk-el~a~f~etsak~g~N 172 (221)
T KOG0094|consen 125 GSDDVIIFLVGNKTDLSDK-------------------------------RQVSIEEGERKAK-ELNAEFIETSAKAGEN 172 (221)
T ss_pred CCCceEEEEEcccccccch-------------------------------hhhhHHHHHHHHH-HhCcEEEEecccCCCC
Confidence 6667899999999999988 8999999998887 5666899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|.++|..|...+...
T Consensus 173 Vk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 173 VKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHHhccCc
Confidence 999999988777443
No 8
>KOG0098|consensus
Probab=99.98 E-value=1.6e-31 Score=252.60 Aligned_cols=170 Identities=26% Similarity=0.388 Sum_probs=160.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+.+.+|++++|+.|||||+|+.||+...|.+.+..|++ ++--+.+.+|+++++|+||||+|+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq----------------- 65 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------------- 65 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc-----------------
Confidence 46789999999999999999999999999999999999 888999999999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
|.|+++...||+.|.++|||||+++++||.++..|+..++.+
T Consensus 66 --------------------------------------e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~ 107 (216)
T KOG0098|consen 66 --------------------------------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQH 107 (216)
T ss_pred --------------------------------------HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..++.-|+|+|||+||... |.|+.++++++|+ ..+..|+|+||++++
T Consensus 108 -~~~NmvImLiGNKsDL~~r-------------------------------R~Vs~EEGeaFA~-ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 108 -SNENMVIMLIGNKSDLEAR-------------------------------REVSKEEGEAFAR-EHGLIFMETSAKTAE 154 (216)
T ss_pred -cCCCcEEEEEcchhhhhcc-------------------------------ccccHHHHHHHHH-HcCceeehhhhhhhh
Confidence 5789999999999999887 8999999999999 478889999999999
Q ss_pred cHHHHHHHHHHHHHHhccc
Q psy1524 298 NITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~~ 316 (592)
||+|+|......|..+.+.
T Consensus 155 ~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 155 NVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876554
No 9
>KOG0394|consensus
Probab=99.98 E-value=4.8e-32 Score=255.75 Aligned_cols=172 Identities=27% Similarity=0.498 Sum_probs=159.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+...+||+|+|++|||||||+|+|++.+|...|..|++ |+.++.+.+|+..+.++||||+|+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------------- 68 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------------- 68 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH-----------------
Confidence 35679999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
|+|.++...+|++||.+++|||++++.||+.+..|.+++..+
T Consensus 69 --------------------------------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~q 110 (210)
T KOG0394|consen 69 --------------------------------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQ 110 (210)
T ss_pred --------------------------------------HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887
Q ss_pred hc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 218 KA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 218 ~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
.. ...-|+||+|||+|+.... .|+|+...++.+++...+++|||+|||
T Consensus 111 a~~~~Pe~FPFVilGNKiD~~~~~-----------------------------~r~VS~~~Aq~WC~s~gnipyfEtSAK 161 (210)
T KOG0394|consen 111 ASPQDPETFPFVILGNKIDVDGGK-----------------------------SRQVSEKKAQTWCKSKGNIPYFETSAK 161 (210)
T ss_pred cCCCCCCcccEEEEcccccCCCCc-----------------------------cceeeHHHHHHHHHhcCCceeEEeccc
Confidence 53 2456999999999997641 289999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
...||+++|+.+.+.++..-
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 99999999999999997654
No 10
>KOG0080|consensus
Probab=99.97 E-value=3.8e-31 Score=244.26 Aligned_cols=173 Identities=28% Similarity=0.419 Sum_probs=161.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
......+||++||++|||||||+-||+.+.|.+....|++ |+..+.+.+++..+++.||||+|+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq--------------- 70 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ--------------- 70 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccch---------------
Confidence 3457789999999999999999999999999998888899 999999999999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
|+|+.+.+.||++|.++|+|||++.+++|.++..|+.++.
T Consensus 71 ----------------------------------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld 110 (209)
T KOG0080|consen 71 ----------------------------------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELD 110 (209)
T ss_pred ----------------------------------------HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.+..++++..++||||+|.... |.|+.+++..+++ .+.+-|+|||||+
T Consensus 111 ~Ystn~diikmlVgNKiDkes~-------------------------------R~V~reEG~kfAr-~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 111 LYSTNPDIIKMLVGNKIDKESE-------------------------------RVVDREEGLKFAR-KHRCLFIECSAKT 158 (209)
T ss_pred hhcCCccHhHhhhcccccchhc-------------------------------ccccHHHHHHHHH-hhCcEEEEcchhh
Confidence 8877888999999999997655 8999999999998 6778899999999
Q ss_pred CccHHHHHHHHHHHHHHhccc
Q psy1524 296 NTNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~~~ 316 (592)
.+||+.+|++++.+|.+....
T Consensus 159 ~~~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPSL 179 (209)
T ss_pred hccHHHHHHHHHHHHhcCcch
Confidence 999999999999999766544
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=5e-30 Score=252.87 Aligned_cols=164 Identities=29% Similarity=0.461 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+.|+++|+.|||||||++||+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq--------------------- 59 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ--------------------- 59 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 4799999999999999999999999999999988 777788899999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|+.++..|+++||++|+|||++++.||+++..|+..+... ...
T Consensus 60 ----------------------------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~ 104 (202)
T cd04120 60 ----------------------------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASE 104 (202)
T ss_pred ----------------------------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence 899999999999999999999999999999999999987665 456
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+||||||+||... +.++.++++.+++...+..|++|||++|.||++
T Consensus 105 ~~piilVgNK~DL~~~-------------------------------~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 105 DAELLLVGNKLDCETD-------------------------------REISRQQGEKFAQQITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred CCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 7999999999999755 678888888888755567899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|+++++.+...
T Consensus 154 ~F~~l~~~~~~~ 165 (202)
T cd04120 154 IFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=5.7e-30 Score=249.89 Aligned_cols=167 Identities=28% Similarity=0.367 Sum_probs=150.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
++.+||+|+|+.|||||||+.+|+.+.|.+.+.+|++ ++....+.+++..+.++||||+|+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~------------------ 65 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ------------------ 65 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4679999999999999999999999999888888876 566777888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|..++..++++||++|+|||++++.||+++..|+.++...
T Consensus 66 -------------------------------------~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~- 107 (189)
T cd04121 66 -------------------------------------GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH- 107 (189)
T ss_pred -------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence 889999999999999999999999999999999999999765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.+++|+||||||+||... +.++.++++.+++ ..+..|+||||++|.|
T Consensus 108 -~~~~piilVGNK~DL~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 108 -APGVPKILVGNRLHLAFK-------------------------------RQVATEQAQAYAE-RNGMTFFEVSPLCNFN 154 (189)
T ss_pred -CCCCCEEEEEECccchhc-------------------------------cCCCHHHHHHHHH-HcCCEEEEecCCCCCC
Confidence 368999999999999765 6788899999997 4567899999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1524 299 ITQVFKELLVQAKVKYN 315 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~~ 315 (592)
|+++|+++++.+...+.
T Consensus 155 V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 155 ITESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999998866544
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=5.3e-30 Score=248.52 Aligned_cols=176 Identities=24% Similarity=0.437 Sum_probs=149.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+++|++|||||||+++|+.+.|.+.+.||+.+.+.+.+.+++..+.++||||+|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~------------------- 63 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------- 63 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4578999999999999999999999999999999999777788889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~ 218 (592)
++|..++..++++||++|+|||++++.||+++ ..|+..+.+.
T Consensus 64 ------------------------------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~- 106 (182)
T cd04172 64 ------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF- 106 (182)
T ss_pred ------------------------------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-
Confidence 88999999999999999999999999999998 7899998775
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.++.|+||||||+||.+.... + ........+.++.++++++++....+.|+||||++|.|
T Consensus 107 -~~~~piilVgNK~DL~~~~~~-----------~--------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 166 (182)
T cd04172 107 -CPNTKMLLVGCKSDLRTDLTT-----------L--------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166 (182)
T ss_pred -CCCCCEEEEeEChhhhcChhh-----------H--------HHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 367999999999999653100 0 00000112578999999999855446899999999998
Q ss_pred -HHHHHHHHHHHHH
Q psy1524 299 -ITQVFKELLVQAK 311 (592)
Q Consensus 299 -VeeLf~~Li~~i~ 311 (592)
|+++|..+++.+.
T Consensus 167 ~v~~~F~~~~~~~~ 180 (182)
T cd04172 167 SVRDIFHVATLACV 180 (182)
T ss_pred CHHHHHHHHHHHHh
Confidence 9999999998653
No 14
>KOG0087|consensus
Probab=99.97 E-value=3.5e-30 Score=248.41 Aligned_cols=172 Identities=31% Similarity=0.447 Sum_probs=161.6
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW 133 (592)
Q Consensus 55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~ 133 (592)
.++..++.+||+++|+++||||-|+.||..+.|.-+...|++ ++.++.+.++++.++.+||||+|+
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ------------- 73 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ------------- 73 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccch-------------
Confidence 456779999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213 (592)
Q Consensus 134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~ 213 (592)
|+|+++...||++|.++++|||++.+.+|+++..|+.+
T Consensus 74 ------------------------------------------ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~E 111 (222)
T KOG0087|consen 74 ------------------------------------------ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKE 111 (222)
T ss_pred ------------------------------------------hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
|+.+ ..++++|+|||||+||... |.|..++++.++. .....|+|+||
T Consensus 112 LRdh-ad~nivimLvGNK~DL~~l-------------------------------raV~te~~k~~Ae-~~~l~f~EtSA 158 (222)
T KOG0087|consen 112 LRDH-ADSNIVIMLVGNKSDLNHL-------------------------------RAVPTEDGKAFAE-KEGLFFLETSA 158 (222)
T ss_pred HHhc-CCCCeEEEEeecchhhhhc-------------------------------cccchhhhHhHHH-hcCceEEEecc
Confidence 9998 6789999999999999876 8899999999998 66777999999
Q ss_pred CCCccHHHHHHHHHHHHHHhc
Q psy1524 294 KDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~~ 314 (592)
..+.||+++|+.++.+|....
T Consensus 159 l~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred cccccHHHHHHHHHHHHHHHH
Confidence 999999999999999886543
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1.1e-29 Score=245.00 Aligned_cols=170 Identities=25% Similarity=0.426 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+++|++|||||||+.+|+.+.|.+.+.+|+++.+...+.+++..+.++||||+|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~---------------------- 59 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ---------------------- 59 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCC----------------------
Confidence 6999999999999999999999999999999999777777888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~ 221 (592)
++|..++..++++||++|+|||+++++||+++ ..|+..+... ..
T Consensus 60 ---------------------------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~--~~ 104 (176)
T cd04133 60 ---------------------------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHY--AP 104 (176)
T ss_pred ---------------------------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh--CC
Confidence 88899999999999999999999999999998 6899988765 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+||||||+||.+..... ......+.++.+++..+++......|+||||++|.||++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~---------------------~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 105 NVPIVLVGTKLDLRDDKQYL---------------------ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKA 163 (176)
T ss_pred CCCEEEEEeChhhccChhhh---------------------hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHH
Confidence 79999999999996541000 001112568899999999854444699999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+.+++.+
T Consensus 164 ~F~~~~~~~ 172 (176)
T cd04133 164 VFDAAIKVV 172 (176)
T ss_pred HHHHHHHHH
Confidence 999999876
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.8e-29 Score=243.77 Aligned_cols=174 Identities=22% Similarity=0.397 Sum_probs=146.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
++||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.++||||+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~--------------------- 59 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGS--------------------- 59 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 47999999999999999999999999999999998777778889999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKAS 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~ 220 (592)
+.|..++..++++||++|+|||++++.||+++ ..|+..+.+. .
T Consensus 60 ----------------------------------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~ 103 (178)
T cd04131 60 ----------------------------------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--C 103 (178)
T ss_pred ----------------------------------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--C
Confidence 78888889999999999999999999999996 7899988875 3
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc-H
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-I 299 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g-V 299 (592)
++.|+||||||+||.++.... ..+ .....+.++.+++.++++......|+||||++|+| |
T Consensus 104 ~~~~iilVgnK~DL~~~~~~~--------~~~-----------~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v 164 (178)
T cd04131 104 PNTKVLLVGCKTDLRTDLSTL--------MEL-----------SHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSV 164 (178)
T ss_pred CCCCEEEEEEChhhhcChhHH--------HHH-----------HhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCH
Confidence 689999999999996431000 000 00112568999999999854445899999999995 9
Q ss_pred HHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAK 311 (592)
Q Consensus 300 eeLf~~Li~~i~ 311 (592)
+++|..+++.++
T Consensus 165 ~~~F~~~~~~~~ 176 (178)
T cd04131 165 RDIFHVATMACL 176 (178)
T ss_pred HHHHHHHHHHHh
Confidence 999999999654
No 17
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=2.5e-29 Score=240.68 Aligned_cols=164 Identities=30% Similarity=0.511 Sum_probs=148.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+|+|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.++||||+|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 60 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQ--------------------- 60 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 47999999999999999999999999988999998777777888999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..++..+|++|+|||++++.||+.+..|+..+.+.....
T Consensus 61 ----------------------------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~ 106 (172)
T cd04141 61 ----------------------------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTE 106 (172)
T ss_pred ----------------------------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999999999999988887764456
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+|+||+|+... +.++.+++..+++ ..+++|+||||++|.||++
T Consensus 107 ~~piilvgNK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 107 DIPLVLVGNKVDLESQ-------------------------------RQVTTEEGRNLAR-EFNCPFFETSAALRHYIDD 154 (172)
T ss_pred CCCEEEEEEChhhhhc-------------------------------CccCHHHHHHHHH-HhCCEEEEEecCCCCCHHH
Confidence 8999999999998765 6788888988887 4577899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 302 VFKELLVQAKV 312 (592)
Q Consensus 302 Lf~~Li~~i~~ 312 (592)
+|+++++.+..
T Consensus 155 ~f~~l~~~~~~ 165 (172)
T cd04141 155 AFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.8e-29 Score=249.30 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=151.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....+||+|+|++|||||||+++|+.+.|.+.|.+|+++.+...+.+++..+.++||||+|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~----------------- 71 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGS----------------- 71 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 345679999999999999999999999999999999999777777889999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~ 216 (592)
++|..+...++++||++|+|||++++.||+++ ..|+..+..
T Consensus 72 --------------------------------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~ 113 (232)
T cd04174 72 --------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMD 113 (232)
T ss_pred --------------------------------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999985 789998887
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. .++.|+||||||+||....... . .......+.|+.++++.+++......|+||||++|
T Consensus 114 ~--~~~~piilVgNK~DL~~~~~~~-----------~--------~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg 172 (232)
T cd04174 114 Y--CPSTRILLIGCKTDLRTDLSTL-----------M--------ELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTS 172 (232)
T ss_pred h--CCCCCEEEEEECcccccccchh-----------h--------hhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 5 3578999999999986531100 0 00011236799999999998543337999999999
Q ss_pred c-cHHHHHHHHHHHHHHh
Q psy1524 297 T-NITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~-gVeeLf~~Li~~i~~~ 313 (592)
+ ||+++|..++..+.+.
T Consensus 173 ~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 173 EKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 8 8999999999988654
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=4.2e-29 Score=243.27 Aligned_cols=176 Identities=24% Similarity=0.433 Sum_probs=147.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+++|++|||||||+.+|+.+.|.+.+.+|+++.+...+.+++..+.++||||+|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------- 61 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ-------------------- 61 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCc--------------------
Confidence 458999999999999999999999999999999999877777788999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~ 219 (592)
++|..++..++++||++|+|||++++.||+++. .|+..+...
T Consensus 62 -----------------------------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-- 104 (191)
T cd01875 62 -----------------------------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-- 104 (191)
T ss_pred -----------------------------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence 899999999999999999999999999999997 477777653
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+||||||+||.+...... .+ .....+.++.+++..+++......|+||||++|.||
T Consensus 105 ~~~~piilvgNK~DL~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v 165 (191)
T cd01875 105 CPNVPILLVGTKKDLRNDADTLK--------KL-----------KEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGV 165 (191)
T ss_pred CCCCCEEEEEeChhhhcChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCH
Confidence 35899999999999965411000 00 001125678889999988555568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+++|+.+++.+..
T Consensus 166 ~e~f~~l~~~~~~ 178 (191)
T cd01875 166 KEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998853
No 20
>KOG0086|consensus
Probab=99.96 E-value=1.7e-29 Score=231.51 Aligned_cols=175 Identities=28% Similarity=0.384 Sum_probs=162.3
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
++.+++.+|++++|+.|.|||+|+.+|+.++|.++...|++ ++-++.+.+.++.++++||||+|+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-------------- 68 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-------------- 68 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH--------------
Confidence 34578999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
|+|++..+.||++|.+.++|||+++++||+.+..|+..+
T Consensus 69 -----------------------------------------ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~Da 107 (214)
T KOG0086|consen 69 -----------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDA 107 (214)
T ss_pred -----------------------------------------HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ..+++-||++|||.||..+ |+|+..++..+++ .....+.|+||+
T Consensus 108 R~l-As~nIvviL~GnKkDL~~~-------------------------------R~VtflEAs~Faq-Enel~flETSa~ 154 (214)
T KOG0086|consen 108 RTL-ASPNIVVILCGNKKDLDPE-------------------------------REVTFLEASRFAQ-ENELMFLETSAL 154 (214)
T ss_pred Hhh-CCCcEEEEEeCChhhcChh-------------------------------hhhhHHHHHhhhc-ccceeeeeeccc
Confidence 876 6788899999999999887 8999999999998 556679999999
Q ss_pred CCccHHHHHHHHHHHHHHhcccCh
Q psy1524 295 DNTNITQVFKELLVQAKVKYNLSP 318 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~~~~~ 318 (592)
+|+||+|.|-.+.+.|+.+....+
T Consensus 155 TGeNVEEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNKIESGE 178 (214)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999987765443
No 21
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=8.8e-29 Score=231.52 Aligned_cols=161 Identities=39% Similarity=0.669 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.++||||+|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT---------------------- 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence 7999999999999999999999999988999998888888889999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..++..+++++|++++|||++++.+|+++..|+..+.......+
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~ 106 (163)
T cd04136 60 ---------------------------------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTEN 106 (163)
T ss_pred ---------------------------------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 88889999999999999999999999999999999999987655568
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+|+|+|+||+|+... +.++.+++..+++ .+..++++|||++|.||+++
T Consensus 107 ~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 107 VPMVLVGNKCDLEDE-------------------------------RVVSREEGQALAR-QWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred CCEEEEEECcccccc-------------------------------ceecHHHHHHHHH-HcCCeEEEecCCCCCCHHHH
Confidence 999999999999754 4556667777766 44578999999999999999
Q ss_pred HHHHHHHH
Q psy1524 303 FKELLVQA 310 (592)
Q Consensus 303 f~~Li~~i 310 (592)
|+++++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998765
No 22
>KOG0079|consensus
Probab=99.96 E-value=1.7e-29 Score=230.37 Aligned_cols=167 Identities=29% Similarity=0.453 Sum_probs=156.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..+|.+|+|++|||||||+.+|..+.|...|..|++ |+..+++.++|..+.|+||||+|+
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------------- 67 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------------- 67 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------------
Confidence 45678999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
|+|+.+...|+++.+++++|||+++.+||.++..|++++...
T Consensus 68 --------------------------------------ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n 109 (198)
T KOG0079|consen 68 --------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN 109 (198)
T ss_pred --------------------------------------HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999885
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
++.+|-|+||||.|+.+. +.|..+++..++. ..++.+||+|||.++
T Consensus 110 --cdsv~~vLVGNK~d~~~R-------------------------------rvV~t~dAr~~A~-~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 110 --CDSVPKVLVGNKNDDPER-------------------------------RVVDTEDARAFAL-QMGIELFETSAKENE 155 (198)
T ss_pred --CccccceecccCCCCccc-------------------------------eeeehHHHHHHHH-hcCchheehhhhhcc
Confidence 568999999999999876 7888999999987 667889999999999
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy1524 298 NITQVFKELLVQAKVKY 314 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~ 314 (592)
|++.+|.-|.++....+
T Consensus 156 NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAK 172 (198)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 99999999999987765
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=2.2e-28 Score=231.24 Aligned_cols=162 Identities=26% Similarity=0.411 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+++|++|||||||+++|+.+.|...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------- 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 48999999999999999999999999988888887 555667788999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
++|..++..+++++|++|+|||++++.||+.+..|+..+... ..
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~ 105 (166)
T cd04122 62 -----------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TN 105 (166)
T ss_pred -----------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CC
Confidence 888888999999999999999999999999999999988765 34
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
++.|+++|+||+|+... +.++.+++..+++ .....+++|||++|.||+
T Consensus 106 ~~~~iiiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 106 PNTVIFLIGNKADLEAQ-------------------------------RDVTYEEAKQFAD-ENGLLFLECSAKTGENVE 153 (166)
T ss_pred CCCeEEEEEECcccccc-------------------------------cCcCHHHHHHHHH-HcCCEEEEEECCCCCCHH
Confidence 67899999999999765 5677788888877 456789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|..+++.+.
T Consensus 154 e~f~~l~~~~~ 164 (166)
T cd04122 154 DAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 24
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.9e-28 Score=230.67 Aligned_cols=161 Identities=35% Similarity=0.657 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+.+.+.+.+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT---------------------- 59 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCc----------------------
Confidence 6999999999999999999999999988999999877788889999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..++..+++++|++|+|||+++..+|+.+..|+..+.......+
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~ 106 (164)
T cd04175 60 ---------------------------------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTED 106 (164)
T ss_pred ---------------------------------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 88999999999999999999999999999999999999887655578
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
.|+++|+||+|+... +.++.+++..+++ ....+|++|||++|.||+++
T Consensus 107 ~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 107 VPMILVGNKCDLEDE-------------------------------RVVGKEQGQNLAR-QWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred CCEEEEEECCcchhc-------------------------------cEEcHHHHHHHHH-HhCCEEEEeeCCCCCCHHHH
Confidence 999999999999765 4556666677765 45578999999999999999
Q ss_pred HHHHHHHH
Q psy1524 303 FKELLVQA 310 (592)
Q Consensus 303 f~~Li~~i 310 (592)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99999876
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.7e-28 Score=235.85 Aligned_cols=173 Identities=25% Similarity=0.439 Sum_probs=145.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+|+|++|||||||+++|+.+.|.+.+.||+++.+...+.+++..+.++||||+|+
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--------------------- 59 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCc---------------------
Confidence 37999999999999999999999999999999999877777888999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~ 220 (592)
++|..++..+++++|++|+|||+++++||+++.. |+..+... .
T Consensus 60 ----------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~ 103 (175)
T cd01874 60 ----------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--C 103 (175)
T ss_pred ----------------------------------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence 7888888889999999999999999999999974 88777664 3
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
+++|+||||||+|+....... ..+ .....+.++.++++.+++......|+||||++|.||+
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~--------~~l-----------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~ 164 (175)
T cd01874 104 PKTPFLLVGTQIDLRDDPSTI--------EKL-----------AKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLK 164 (175)
T ss_pred CCCCEEEEEECHhhhhChhhH--------HHh-----------hhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHH
Confidence 579999999999986541100 000 0112367899999999885555789999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+.++..+
T Consensus 165 ~~f~~~~~~~ 174 (175)
T cd01874 165 NVFDEAILAA 174 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.5e-28 Score=238.12 Aligned_cols=169 Identities=24% Similarity=0.382 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
+||+|+|++|||||||+++|+++.|...+.+|++ ++....+.++ +..+.++||||+|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~-------------------- 60 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ-------------------- 60 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--------------------
Confidence 5999999999999999999999999988999998 6667777887 88899999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-- 218 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-- 218 (592)
++|..++..+++++|++|+|||++++.||+.+..|+..+....
T Consensus 61 -----------------------------------~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~ 105 (201)
T cd04107 61 -----------------------------------ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL 105 (201)
T ss_pred -----------------------------------hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 8888999999999999999999999999999999998887542
Q ss_pred -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+||||||+|+.+. +.++.+++..+++......|++|||++|.
T Consensus 106 ~~~~~~piilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 106 PNGEPIPCLLLANKCDLKKR-------------------------------LAKDGEQMDQFCKENGFIGWFETSAKEGI 154 (201)
T ss_pred cCCCCCcEEEEEECCCcccc-------------------------------cccCHHHHHHHHHHcCCceEEEEeCCCCC
Confidence 2367899999999999754 56778888888885544689999999999
Q ss_pred cHHHHHHHHHHHHHHhcccC
Q psy1524 298 NITQVFKELLVQAKVKYNLS 317 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~~~ 317 (592)
||+++|+++++.+....+..
T Consensus 155 ~v~e~f~~l~~~l~~~~~~~ 174 (201)
T cd04107 155 NIEEAMRFLVKNILANDKNL 174 (201)
T ss_pred CHHHHHHHHHHHHHHhchhh
Confidence 99999999999987654433
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=4.8e-28 Score=234.96 Aligned_cols=168 Identities=36% Similarity=0.580 Sum_probs=148.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.++||||+|+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 63 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ------------------- 63 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence 3468999999999999999999999999988999998777888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++|..++..+++.+|++|+|||++++.||+.+..|+..+.+...
T Consensus 64 ------------------------------------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~ 107 (189)
T PTZ00369 64 ------------------------------------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD 107 (189)
T ss_pred ------------------------------------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 78889999999999999999999999999999999999887654
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+... +.++.+++..+++ ....++++|||++|.||
T Consensus 108 ~~~~piiiv~nK~Dl~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 108 KDRVPMILVGNKCDLDSE-------------------------------RQVSTGEGQELAK-SFGIPFLETSAKQRVNV 155 (189)
T ss_pred CCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HhCCEEEEeeCCCCCCH
Confidence 568899999999998654 5667677777766 44578999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy1524 300 TQVFKELLVQAKVKY 314 (592)
Q Consensus 300 eeLf~~Li~~i~~~~ 314 (592)
+++|+++++.+....
T Consensus 156 ~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 156 DEAFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886553
No 28
>KOG0091|consensus
Probab=99.96 E-value=6.5e-29 Score=230.06 Aligned_cols=170 Identities=25% Similarity=0.404 Sum_probs=154.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+.+++++||++-||||||+..|+.++|.+-..||++ |++.+.+++ +|..++|++|||+|+
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq----------------- 68 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------------- 68 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------------
Confidence 4678999999999999999999999999998899999 888887776 788999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
|+|+++...||+++-++++|||++|++||+++..|.++..-.
T Consensus 69 --------------------------------------erfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~ 110 (213)
T KOG0091|consen 69 --------------------------------------ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMA 110 (213)
T ss_pred --------------------------------------HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998776
Q ss_pred hcCCC-CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 218 KASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 218 ~~~~~-~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
...+. +-+.|||+|+||... |+|+.++++.+++ ..++.|+|+||++|
T Consensus 111 ~q~P~k~VFlLVGhKsDL~Sq-------------------------------RqVt~EEaEklAa-~hgM~FVETSak~g 158 (213)
T KOG0091|consen 111 TQGPDKVVFLLVGHKSDLQSQ-------------------------------RQVTAEEAEKLAA-SHGMAFVETSAKNG 158 (213)
T ss_pred cCCCCeeEEEEeccccchhhh-------------------------------ccccHHHHHHHHH-hcCceEEEecccCC
Confidence 55344 456799999999866 9999999999998 77888999999999
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q psy1524 297 TNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~~~ 316 (592)
.||+|.|..+.+.+....+.
T Consensus 159 ~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 159 CNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 99999999999998766544
No 29
>KOG0093|consensus
Probab=99.96 E-value=1.2e-28 Score=224.62 Aligned_cols=171 Identities=25% Similarity=0.433 Sum_probs=157.4
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.+.-++.+|++|+|++.||||||+-|++++.|...+..|.+ ++..+++.-+.+.+.+++|||+|+
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq-------------- 80 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ-------------- 80 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc--------------
Confidence 34457788999999999999999999999999999999999 888888777888999999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
|+|+.+...|+++|+++|+|||++|.+||..++.|...|
T Consensus 81 -----------------------------------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI 119 (193)
T KOG0093|consen 81 -----------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQI 119 (193)
T ss_pred -----------------------------------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
..+ .-.+.|+|+||||||+.+. |.++.+.++.++. ..+..|||+|||
T Consensus 120 kty-sw~naqvilvgnKCDmd~e-------------------------------Rvis~e~g~~l~~-~LGfefFEtSaK 166 (193)
T KOG0093|consen 120 KTY-SWDNAQVILVGNKCDMDSE-------------------------------RVISHERGRQLAD-QLGFEFFETSAK 166 (193)
T ss_pred eee-eccCceEEEEecccCCccc-------------------------------eeeeHHHHHHHHH-HhChHHhhhccc
Confidence 776 5678999999999999887 8999999999988 667789999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
.+.||+++|+.++..|.++.
T Consensus 167 ~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKM 186 (193)
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 99999999999999997654
No 30
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=6.2e-28 Score=226.68 Aligned_cols=162 Identities=36% Similarity=0.644 Sum_probs=143.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+++|++|||||||+++++.+.+.+.+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--------------------- 59 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 37999999999999999999999999988889888888888889999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..+++++|++|+|||++++.||+++..|+..+.+.....
T Consensus 60 ----------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 105 (163)
T cd04176 60 ----------------------------------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYE 105 (163)
T ss_pred ----------------------------------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 8888999999999999999999999999999999999998765456
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+... +.+..+++..+++ ....++++|||++|.||++
T Consensus 106 ~~piviv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 106 KVPIILVGNKVDLESE-------------------------------REVSSAEGRALAE-EWGCPFMETSAKSKTMVNE 153 (163)
T ss_pred CCCEEEEEECccchhc-------------------------------CccCHHHHHHHHH-HhCCEEEEecCCCCCCHHH
Confidence 8999999999998654 4556666777765 3457899999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|..+++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 31
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1e-27 Score=227.04 Aligned_cols=164 Identities=33% Similarity=0.519 Sum_probs=145.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.+||+|+|++|||||||+++|+++.|.+.+.+|++ +.....+.+++..+.++||||+|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------------------- 62 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ------------------- 62 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch-------------------
Confidence 568999999999999999999999999999899888 566677788898899999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.+..+...++++||++|+|||++++.||..+..|+..+... .
T Consensus 63 ------------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~ 105 (167)
T cd01867 63 ------------------------------------ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-A 105 (167)
T ss_pred ------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-C
Confidence 778888888999999999999999999999999999988775 3
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+.+. +.+..+++..++. ....++++|||++|.||
T Consensus 106 ~~~~p~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 106 SEDVERMLVGNKCDMEEK-------------------------------RVVSKEEGEALAD-EYGIKFLETSAKANINV 153 (167)
T ss_pred CCCCcEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCH
Confidence 467899999999999865 5567777777776 45678999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+++|+++++.+..
T Consensus 154 ~~~~~~i~~~~~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998853
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=9.8e-28 Score=239.87 Aligned_cols=178 Identities=21% Similarity=0.361 Sum_probs=147.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
++||+|||++|||||||+++|+.+.|.+.|.||+.+.+...+.+++..+.|.||||+|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~--------------------- 59 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS--------------------- 59 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 37999999999999999999999999999999999877788889999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~ 220 (592)
+.|..++..++.++|++|+|||+++++||+++.. |...+.. ..
T Consensus 60 ----------------------------------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~--~~ 103 (222)
T cd04173 60 ----------------------------------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQE--FC 103 (222)
T ss_pred ----------------------------------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--hC
Confidence 8899999999999999999999999999999954 6555544 35
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc-H
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-I 299 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g-V 299 (592)
++.|+||||||+||.++.... ..+. ......++.+++..+++....+.|+||||+++.| |
T Consensus 104 ~~~piiLVgnK~DL~~~~~~~--------~~~~-----------~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V 164 (222)
T cd04173 104 PNAKVVLVGCKLDMRTDLATL--------RELS-----------KQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSV 164 (222)
T ss_pred CCCCEEEEEECcccccchhhh--------hhhh-----------hccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCH
Confidence 689999999999997541100 0000 0012458889999999866556899999999985 9
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1524 300 TQVFKELLVQAKVKYN 315 (592)
Q Consensus 300 eeLf~~Li~~i~~~~~ 315 (592)
+++|..++..+..+..
T Consensus 165 ~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 165 RDVFHVATVASLGRGH 180 (222)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999998765443
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=9e-28 Score=229.46 Aligned_cols=166 Identities=25% Similarity=0.449 Sum_probs=144.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC----------CeEEEEEEEeCCCCCCCCcccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN----------GVHLKLDILDTSGEQSGKGLKC 128 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd----------g~~v~L~I~DT~G~~~~~~~~~ 128 (592)
.+.+||+++|++|||||||+++|+.+.|...+.+|++ ++....+.++ +..+.++||||+|+
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------- 73 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ-------- 73 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--------
Confidence 3569999999999999999999999999988888887 5555555543 45788999999999
Q ss_pred cccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH
Q psy1524 129 GAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR 208 (592)
Q Consensus 129 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~ 208 (592)
++|..++..+++++|++|+|||+++++||.++.
T Consensus 74 -----------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 106 (180)
T cd04127 74 -----------------------------------------------ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVR 106 (180)
T ss_pred -----------------------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 888899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeE
Q psy1524 209 LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288 (592)
Q Consensus 209 ~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~ 288 (592)
.|+..+.......++|+++|+||+|+.+. +.++.+++..+++ ..++++
T Consensus 107 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~ 154 (180)
T cd04127 107 NWMSQLQTHAYCENPDIVLCGNKADLEDQ-------------------------------RQVSEEQAKALAD-KYGIPY 154 (180)
T ss_pred HHHHHHHHhcCCCCCcEEEEEeCccchhc-------------------------------CccCHHHHHHHHH-HcCCeE
Confidence 99999877644568899999999999765 5677788888877 456789
Q ss_pred EEcccCCCccHHHHHHHHHHHHHH
Q psy1524 289 VEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 289 ~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
+++||++|.||+++|+.+++.+.+
T Consensus 155 ~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 155 FETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 34
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=7.9e-28 Score=233.64 Aligned_cols=165 Identities=33% Similarity=0.552 Sum_probs=144.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.++||||+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------- 57 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ----------------------- 57 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCc-----------------------
Confidence 689999999999999999999999988999998777777888999999999999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--CC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--ST 221 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~--~~ 221 (592)
++|..++..+++++|++|+|||+++..||+.+..|+..+..... ..
T Consensus 58 --------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 105 (190)
T cd04144 58 --------------------------------EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAA 105 (190)
T ss_pred --------------------------------hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 88889999999999999999999999999999999998877532 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+||||+|+... +.++.+++..+++ ..+..|+++||++|.||++
T Consensus 106 ~~piilvgNK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 106 DVPIMIVGNKCDKVYE-------------------------------REVSTEEGAALAR-RLGCEFIEASAKTNVNVER 153 (190)
T ss_pred CCCEEEEEEChhcccc-------------------------------CccCHHHHHHHHH-HhCCEEEEecCCCCCCHHH
Confidence 7899999999999755 5667777777766 3457899999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy1524 302 VFKELLVQAKVKYN 315 (592)
Q Consensus 302 Lf~~Li~~i~~~~~ 315 (592)
+|+.+++.+.....
T Consensus 154 l~~~l~~~l~~~~~ 167 (190)
T cd04144 154 AFYTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998864433
No 35
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.2e-27 Score=224.72 Aligned_cols=162 Identities=38% Similarity=0.661 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+++|||+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~---------------------- 58 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence 5999999999999999999999999988899998888888888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..++..+++++|++++|||++++++|+.+..|+..+.+.....+
T Consensus 59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 105 (164)
T smart00173 59 ---------------------------------EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD 105 (164)
T ss_pred ---------------------------------ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 78888999999999999999999999999999999998887655568
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+|+|+|+||+|+... +.++.+++..+++ ....++++|||++|.||+++
T Consensus 106 ~pii~v~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 106 VPIVLVGNKCDLESE-------------------------------RVVSTEEGKELAR-QWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred CCEEEEEECcccccc-------------------------------ceEcHHHHHHHHH-HcCCEEEEeecCCCCCHHHH
Confidence 999999999999764 4556667777776 35588999999999999999
Q ss_pred HHHHHHHHH
Q psy1524 303 FKELLVQAK 311 (592)
Q Consensus 303 f~~Li~~i~ 311 (592)
|+.+++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998764
No 36
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=1.6e-27 Score=221.79 Aligned_cols=161 Identities=34% Similarity=0.571 Sum_probs=141.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+|+|++|||||||+++|+++.|...+.+|+.+.+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--------------------- 59 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 37999999999999999999999999988999998877788888998899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..+++++|++++|||+++..+|+++..|+..+.+.....
T Consensus 60 ----------------------------------~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~ 105 (162)
T cd04138 60 ----------------------------------EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSD 105 (162)
T ss_pred ----------------------------------cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999999999999888765456
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+... .+..+++..+++ ....+++++||++|.||++
T Consensus 106 ~~piivv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 106 DVPMVLVGNKCDLAAR--------------------------------TVSSRQGQDLAK-SYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred CCCEEEEEECcccccc--------------------------------eecHHHHHHHHH-HhCCeEEEecCCCCCCHHH
Confidence 8999999999998643 345566666665 4466899999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+.+++.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.4e-27 Score=225.45 Aligned_cols=159 Identities=25% Similarity=0.454 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|+.+.|.+.+.+|++ +.....+.+++..+.++||||+|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------- 59 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 5899999999999999999999999988889988 566677888998999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..+...+++.+|++++|||++++.||+.+..|+..+... ...
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~ 104 (161)
T cd04117 60 ----------------------------------ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APE 104 (161)
T ss_pred ----------------------------------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence 778888888999999999999999999999999999988765 345
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++||||+|+... +.++.+++..+++ .+.++|+||||++|.||++
T Consensus 105 ~~~iilvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 105 GVQKILIGNKADEEQK-------------------------------RQVGDEQGNKLAK-EYGMDFFETSACTNSNIKE 152 (161)
T ss_pred CCeEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence 7999999999999765 6778888998887 4568899999999999999
Q ss_pred HHHHHHHH
Q psy1524 302 VFKELLVQ 309 (592)
Q Consensus 302 Lf~~Li~~ 309 (592)
+|++|++.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999864
No 38
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=1e-27 Score=230.23 Aligned_cols=171 Identities=25% Similarity=0.446 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+.+|+.+.|.+.+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ---------------------- 59 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCc----------------------
Confidence 7999999999999999999999999999999998887778888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~ 221 (592)
+.|..++..+++++|++|+|||+++++||+++. .|+..+... ..
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~ 104 (174)
T cd01871 60 ---------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CP 104 (174)
T ss_pred ---------------------------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 788888888999999999999999999999996 577777654 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+||||||+|+.+.....+ .+ .....+.++.+++..+++....+.|+||||++|.||++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 105 NTPIILVGTKLDLRDDKDTIE--------KL-----------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKT 165 (174)
T ss_pred CCCEEEEeeChhhccChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHH
Confidence 799999999999965311000 00 00122678899999999865556899999999999999
Q ss_pred HHHHHHHH
Q psy1524 302 VFKELLVQ 309 (592)
Q Consensus 302 Lf~~Li~~ 309 (592)
+|+.+++.
T Consensus 166 ~f~~l~~~ 173 (174)
T cd01871 166 VFDEAIRA 173 (174)
T ss_pred HHHHHHHh
Confidence 99999864
No 39
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=2.8e-27 Score=221.58 Aligned_cols=162 Identities=33% Similarity=0.601 Sum_probs=143.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+++|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+++|||+|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 60 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--------------------- 60 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 47999999999999999999999999888889988777777888998899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+++..++..+++++|++++|||+++..+|+.+..|+..+.......
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 106 (164)
T cd04145 61 ----------------------------------EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRD 106 (164)
T ss_pred ----------------------------------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7888899999999999999999999999999999999988765556
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+|+||+|+... +.++.+++..+++ ....+++++||++|.||++
T Consensus 107 ~~piiiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 107 EFPMILVGNKADLEHQ-------------------------------RKVSREEGQELAR-KLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred CCCEEEEeeCcccccc-------------------------------ceecHHHHHHHHH-HcCCcEEEeeCCCCCCHHH
Confidence 8999999999999755 4566667777776 3456899999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+.+++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=2.3e-27 Score=222.04 Aligned_cols=162 Identities=26% Similarity=0.391 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--------------------- 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc---------------------
Confidence 5999999999999999999999999988999988 566777888899999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC-
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS- 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~- 220 (592)
+.+..++..+++++|++|+|||++++.+|+.+..|+..+......
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~ 105 (168)
T cd04119 60 ----------------------------------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPH 105 (168)
T ss_pred ----------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc
Confidence 778888899999999999999999999999999999999876432
Q ss_pred ---CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 221 ---TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 221 ---~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.+.|+++|+||+|+... +.++.+++..++. ....+++++||++|.
T Consensus 106 ~~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 106 GNMENIVVVVCANKIDLTKH-------------------------------RAVSEDEGRLWAE-SKGFKYFETSACTGE 153 (168)
T ss_pred ccCCCceEEEEEEchhcccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCCC
Confidence 57899999999999754 4566777777766 445789999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+++.+.
T Consensus 154 gi~~l~~~l~~~l~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=3.2e-27 Score=223.30 Aligned_cols=162 Identities=28% Similarity=0.464 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.|...+.+|++ ++....+..++..+.+++|||+|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--------------------- 60 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--------------------- 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 7999999999999999999999999888888887 555666777888899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+++..++..+++++|++++|||++++.+|+.+..|+..+... ...
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~ 105 (165)
T cd01865 61 ----------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWD 105 (165)
T ss_pred ----------------------------------HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence 778888889999999999999999999999999999988765 345
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+.+. +.+..+++..+++ ..+.+++++||++|.||++
T Consensus 106 ~~piivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 106 NAQVILVGNKCDMEDE-------------------------------RVVSSERGRQLAD-QLGFEFFEASAKENINVKQ 153 (165)
T ss_pred CCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCCCHHH
Confidence 7899999999999765 4566677777766 4566899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 302 VFKELLVQAKV 312 (592)
Q Consensus 302 Lf~~Li~~i~~ 312 (592)
+|+.+++.+..
T Consensus 154 l~~~l~~~~~~ 164 (165)
T cd01865 154 VFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987743
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.4e-27 Score=221.84 Aligned_cols=162 Identities=31% Similarity=0.516 Sum_probs=143.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+++|||+|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------- 61 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 58999999999999999999999999888888877 666777888998899999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
++|..++..+++.+|++|+|||+++++||.++..|+..+... ..
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~ 105 (166)
T cd01869 62 -----------------------------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-AS 105 (166)
T ss_pred -----------------------------------HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CC
Confidence 788888889999999999999999999999999999988775 34
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.+.|+|+|+||+|+... +.+..+++..+++ ....+++++||++|.||+
T Consensus 106 ~~~~~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 106 ENVNKLLVGNKCDLTDK-------------------------------RVVDYSEAQEFAD-ELGIPFLETSAKNATNVE 153 (166)
T ss_pred CCCcEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECCCCcCHH
Confidence 57899999999998765 5567778888876 557789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+++.+.
T Consensus 154 ~~~~~i~~~~~ 164 (166)
T cd01869 154 QAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=3.5e-27 Score=221.02 Aligned_cols=160 Identities=34% Similarity=0.611 Sum_probs=147.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
||+|+|+.+||||||+++|.++.|.+.+.+|++ +.....+.+++..+.++|||++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------- 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ---------------------- 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence 899999999999999999999999999999995 888899999999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..+...+++++|++|+|||+++++||+.+..|+..+.... ..+
T Consensus 59 ---------------------------------~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~-~~~ 104 (162)
T PF00071_consen 59 ---------------------------------ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK-PED 104 (162)
T ss_dssp ---------------------------------GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS-TTT
T ss_pred ---------------------------------ccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 8888899999999999999999999999999999999998873 356
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+|++|||||+|+.+. +.++.++++.+++. .+.+|+||||+++.||.++
T Consensus 105 ~~iivvg~K~D~~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 105 IPIIVVGNKSDLSDE-------------------------------REVSVEEAQEFAKE-LGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp SEEEEEEETTTGGGG-------------------------------SSSCHHHHHHHHHH-TTSEEEEEBTTTTTTHHHH
T ss_pred ccceeeecccccccc-------------------------------ccchhhHHHHHHHH-hCCEEEEEECCCCCCHHHH
Confidence 899999999999875 78899999999984 4599999999999999999
Q ss_pred HHHHHHHHH
Q psy1524 303 FKELLVQAK 311 (592)
Q Consensus 303 f~~Li~~i~ 311 (592)
|..+++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 44
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=2.2e-27 Score=230.43 Aligned_cols=173 Identities=29% Similarity=0.447 Sum_probs=143.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|..+.|...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~----------------------- 58 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQ----------------------- 58 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCC-----------------------
Confidence 899999999999999999999999988999998777777788898999999999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTA 222 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~~ 222 (592)
+.|..++..++..+|++|+|||++++.||+.+. .|+..+... ..+
T Consensus 59 --------------------------------~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~ 104 (189)
T cd04134 59 --------------------------------EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPG 104 (189)
T ss_pred --------------------------------hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence 777778888899999999999999999999997 488887764 358
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
.|+||||||+||........ .+ .....+.++.+++..+++....+.|+||||++|.||+++
T Consensus 105 ~piilvgNK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 105 VKLVLVALKCDLREARNERD--------DL-----------QRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEA 165 (189)
T ss_pred CCEEEEEEChhhccChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHH
Confidence 99999999999976421000 00 000113567788888887555578999999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 303 FKELLVQAKV 312 (592)
Q Consensus 303 f~~Li~~i~~ 312 (592)
|+++++.+..
T Consensus 166 f~~l~~~~~~ 175 (189)
T cd04134 166 FTEAARVALN 175 (189)
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 45
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=3.2e-27 Score=228.70 Aligned_cols=167 Identities=20% Similarity=0.367 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~--------------------- 59 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ--------------------- 59 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 5899999999999999999999999999999998 666778889999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..++++||++++|||++++.||+++..|+..+... ...
T Consensus 60 ----------------------------------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~-~~~ 104 (182)
T cd04128 60 ----------------------------------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKT 104 (182)
T ss_pred ----------------------------------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence 788889999999999999999999999999999999988775 234
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
..| |+||||+|+..... ...+....+++..+++ ..+..+++|||++|.||++
T Consensus 105 ~~p-ilVgnK~Dl~~~~~--------------------------~~~~~~~~~~~~~~a~-~~~~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 105 AIP-ILVGTKYDLFADLP--------------------------PEEQEEITKQARKYAK-AMKAPLIFCSTSHSINVQK 156 (182)
T ss_pred CCE-EEEEEchhcccccc--------------------------chhhhhhHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence 566 68899999964200 0001122456777776 4457899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|+++++.+...
T Consensus 157 lf~~l~~~l~~~ 168 (182)
T cd04128 157 IFKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=5.4e-27 Score=221.73 Aligned_cols=160 Identities=40% Similarity=0.630 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+++|++|||||||+++|+++.|...+.+|+...+...+..++..+.+++|||+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGS---------------------- 59 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCC----------------------
Confidence 7999999999999999999999999888889888777777777888899999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--C
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--S 220 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~--~ 220 (592)
++|..+...++..+|++|+|||++++.||+.+..|+..+.+... .
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~ 106 (165)
T cd04140 60 ---------------------------------HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNI 106 (165)
T ss_pred ---------------------------------CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 77888888899999999999999999999999999988876532 2
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+... +.+..+++..++. ...+.|+||||++|.||+
T Consensus 107 ~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 107 EKIPIMLVGNKCDESHK-------------------------------REVSSNEGAACAT-EWNCAFMETSAKTNHNVQ 154 (165)
T ss_pred CCCCEEEEEECcccccc-------------------------------CeecHHHHHHHHH-HhCCcEEEeecCCCCCHH
Confidence 57899999999999754 4566677777765 456789999999999999
Q ss_pred HHHHHHHHH
Q psy1524 301 QVFKELLVQ 309 (592)
Q Consensus 301 eLf~~Li~~ 309 (592)
++|++|++.
T Consensus 155 ~~f~~l~~~ 163 (165)
T cd04140 155 ELFQELLNL 163 (165)
T ss_pred HHHHHHHhc
Confidence 999999753
No 47
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=4.7e-27 Score=233.00 Aligned_cols=163 Identities=28% Similarity=0.387 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCC-eEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNG-VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg-~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
+||+|+|++|||||||+++|+++.|...+.+|++ +++.+.+.+++ ..+.++||||+|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~-------------------- 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ-------------------- 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--------------------
Confidence 5899999999999999999999999999999998 78788888864 5789999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA- 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~- 219 (592)
+.+..+...++++||++|+|||+++++||+++..|+..+.+...
T Consensus 61 -----------------------------------~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~ 105 (215)
T cd04109 61 -----------------------------------SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS 105 (215)
T ss_pred -----------------------------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence 77888999999999999999999999999999999999987642
Q ss_pred -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+.+. +.++.+++..+++ ..+..+++|||++|.|
T Consensus 106 ~~~~~piilVgNK~DL~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~iSAktg~g 153 (215)
T cd04109 106 SETQPLVVLVGNKTDLEHN-------------------------------RTVKDDKHARFAQ-ANGMESCLVSAKTGDR 153 (215)
T ss_pred cCCCceEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCCC
Confidence 245789999999999755 6778888888887 4567899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
|+++|+.+++.+..
T Consensus 154 v~~lf~~l~~~l~~ 167 (215)
T cd04109 154 VNLLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 48
>KOG0095|consensus
Probab=99.95 E-value=1.3e-27 Score=218.28 Aligned_cols=169 Identities=32% Similarity=0.461 Sum_probs=154.6
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
+.+...+||++||..|||||+|+.||+.+-|++....|++ |+..+++.++|.+++++||||+|+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq--------------- 66 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ--------------- 66 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch---------------
Confidence 4567789999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
|+|+++...||+.|+++|+|||++-..||+-+..|+.+|.
T Consensus 67 ----------------------------------------erfrsitqsyyrsahalilvydiscqpsfdclpewlreie 106 (213)
T KOG0095|consen 67 ----------------------------------------ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIE 106 (213)
T ss_pred ----------------------------------------HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.+ ...++--|+||||+|+.+. |.|+...++.+.+. ...-|+|+||+.
T Consensus 107 ~y-an~kvlkilvgnk~d~~dr-------------------------------revp~qigeefs~~-qdmyfletsake 153 (213)
T KOG0095|consen 107 QY-ANNKVLKILVGNKIDLADR-------------------------------REVPQQIGEEFSEA-QDMYFLETSAKE 153 (213)
T ss_pred HH-hhcceEEEeeccccchhhh-------------------------------hhhhHHHHHHHHHh-hhhhhhhhcccc
Confidence 87 5667888999999999877 78888888888774 455589999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
..||+.||..+...+...
T Consensus 154 a~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999998877544
No 49
>KOG0395|consensus
Probab=99.95 E-value=2.3e-27 Score=232.87 Aligned_cols=169 Identities=40% Similarity=0.662 Sum_probs=158.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+++|.+|||||+|+.+|+.+.|.+.|.||++|.+.+.+.+++..+.+.|+||+|+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~-------------------- 61 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ-------------------- 61 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCc--------------------
Confidence 358999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
++|..|...++.++|++++||+++|+.||+.+..++..|.+....
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~ 106 (196)
T KOG0395|consen 62 -----------------------------------EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR 106 (196)
T ss_pred -----------------------------------ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 889999999999999999999999999999999999999887777
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+|+||||+|+... |.|+.++++.++. .+.++|+|+||+.+.||+
T Consensus 107 ~~~PivlVGNK~Dl~~~-------------------------------R~V~~eeg~~la~-~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 107 DDVPIILVGNKCDLERE-------------------------------RQVSEEEGKALAR-SWGCAFIETSAKLNYNVD 154 (196)
T ss_pred CCCCEEEEEEcccchhc-------------------------------cccCHHHHHHHHH-hcCCcEEEeeccCCcCHH
Confidence 78999999999999876 8999999999977 788889999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy1524 301 QVFKELLVQAKVKYNL 316 (592)
Q Consensus 301 eLf~~Li~~i~~~~~~ 316 (592)
++|..+++.+...+..
T Consensus 155 ~~F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 155 EVFYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999999764443
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6.6e-27 Score=220.64 Aligned_cols=162 Identities=25% Similarity=0.465 Sum_probs=142.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.+||+|+|++|||||||+++|..+.+...+.+|.+ +.....+.+++..+.++||||+|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------- 62 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------------------- 62 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 568999999999999999999999999888878876 666777888998889999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.|..+...+++.+|++++|||++++.||+.+..|+..+... .
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~ 105 (165)
T cd01864 63 ------------------------------------ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY-G 105 (165)
T ss_pred ------------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh-C
Confidence 778888889999999999999999999999999999998765 3
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+... +.+..+++..+++......++++||++|.|+
T Consensus 106 ~~~~p~ivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 106 ASNVVLLLIGNKCDLEEQ-------------------------------REVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred CCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence 568999999999999765 5567778888887555567999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 300 TQVFKELLVQ 309 (592)
Q Consensus 300 eeLf~~Li~~ 309 (592)
+++|+.+++.
T Consensus 155 ~~~~~~l~~~ 164 (165)
T cd01864 155 EEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=7.1e-27 Score=223.35 Aligned_cols=164 Identities=26% Similarity=0.437 Sum_probs=140.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
||+++|++|||||||+++|+.+.|.+.|.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ---------------------- 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------------------
Confidence 899999999999999999999999999999998 566677888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..++..+++++|++|+|||++++.+|+.+..|+..+.+.....+
T Consensus 60 ---------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 106 (170)
T cd04108 60 ---------------------------------ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS 106 (170)
T ss_pred ---------------------------------HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 88889999999999999999999999999999999998876544456
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
.|+++|+||+|+.+... ..+..+++..+++ ....+|+++||++|.||+++
T Consensus 107 ~~iilVgnK~Dl~~~~~-----------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 107 VLLFLVGTKKDLSSPAQ-----------------------------YALMEQDAIKLAA-EMQAEYWSVSALSGENVREF 156 (170)
T ss_pred CeEEEEEEChhcCcccc-----------------------------ccccHHHHHHHHH-HcCCeEEEEECCCCCCHHHH
Confidence 78999999999865410 2234556666665 34568999999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 303 FKELLVQAKV 312 (592)
Q Consensus 303 f~~Li~~i~~ 312 (592)
|+.+++.+.+
T Consensus 157 f~~l~~~~~~ 166 (170)
T cd04108 157 FFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 52
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=4.2e-27 Score=222.75 Aligned_cols=157 Identities=20% Similarity=0.356 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+.+|+.+.|.+.+.++. ..+...+.+++..+.+.||||+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~---------------------- 57 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGA---------------------- 57 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCC----------------------
Confidence 589999999999999999999999987766554 344577889999999999999998
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
+. ..+++.+|++++|||++|+.||+++..|+..+.......+
T Consensus 58 ---------------------------------~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~ 99 (158)
T cd04103 58 ---------------------------------PD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISE 99 (158)
T ss_pred ---------------------------------Cc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 32 1356789999999999999999999999999987644467
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+|+++||||+|+.... .+.++.++++++++....+.|+||||++|.||+++
T Consensus 100 ~piilvgnK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 100 IPLILVGTQDAISESN-----------------------------PRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred CCEEEEeeHHHhhhcC-----------------------------CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 8999999999985321 16788888988987555688999999999999999
Q ss_pred HHHHHHH
Q psy1524 303 FKELLVQ 309 (592)
Q Consensus 303 f~~Li~~ 309 (592)
|+.+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999864
No 53
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=6.1e-27 Score=237.79 Aligned_cols=163 Identities=44% Similarity=0.717 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+.+.|...+.+|+.+++.+.+.+++..+.++||||+|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~---------------------- 58 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN---------------------- 58 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCC----------------------
Confidence 5899999999999999999999999988999999888888899999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh----
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK---- 218 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~---- 218 (592)
+.|..++..++..+|++|+|||+++++||+++..|+.++.+..
T Consensus 59 ---------------------------------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~ 105 (247)
T cd04143 59 ---------------------------------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLK 105 (247)
T ss_pred ---------------------------------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 7788888889999999999999999999999999999987642
Q ss_pred ----cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 219 ----ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 219 ----~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
...++|+|||+||+|+... +.++.+++..++.....+.+++|||+
T Consensus 106 ~~~~~~~~~piIivgNK~Dl~~~-------------------------------~~v~~~ei~~~~~~~~~~~~~evSAk 154 (247)
T cd04143 106 NKTKENVKIPMVICGNKADRDFP-------------------------------REVQRDEVEQLVGGDENCAYFEVSAK 154 (247)
T ss_pred cccccCCCCcEEEEEECccchhc-------------------------------cccCHHHHHHHHHhcCCCEEEEEeCC
Confidence 2357899999999999754 55677777777664456789999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAK 311 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~ 311 (592)
+|.||+++|+.|+..+.
T Consensus 155 tg~gI~elf~~L~~~~~ 171 (247)
T cd04143 155 KNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999998763
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=9.9e-27 Score=230.52 Aligned_cols=165 Identities=24% Similarity=0.433 Sum_probs=145.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+||+|+|++|||||||+++|+++.+...+.+|++ +++.+.+.+ ++..+.++||||+|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~------------------- 62 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ------------------- 62 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc-------------------
Confidence 58999999999999999999999999888888887 677777776 577889999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.|..+...+++++|++|+|||++++.||+++..|+..+.+...
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~ 106 (211)
T cd04111 63 ------------------------------------ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ 106 (211)
T ss_pred ------------------------------------hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 78888888999999999999999999999999999999877644
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
...+|+|||+||+|+... +.++.+++..+++ ..++.|++|||++|.||
T Consensus 107 ~~~~~iilvgNK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 107 PHRPVFILVGHKCDLESQ-------------------------------RQVTREEAEKLAK-DLGMKYIETSARTGDNV 154 (211)
T ss_pred CCCCeEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCEEEEEeCCCCCCH
Confidence 456789999999999765 5678888888887 45588999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1524 300 TQVFKELLVQAKVK 313 (592)
Q Consensus 300 eeLf~~Li~~i~~~ 313 (592)
+++|+.|++.+...
T Consensus 155 ~e~f~~l~~~~~~~ 168 (211)
T cd04111 155 EEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988655
No 55
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=1.4e-26 Score=217.97 Aligned_cols=162 Identities=31% Similarity=0.506 Sum_probs=142.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+++|||+|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~------------------- 62 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ------------------- 62 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh-------------------
Confidence 468999999999999999999999999877888887 666778888898899999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..+...+++.++++|+|||++++.+|.++..|+..+.+. .
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~ 105 (165)
T cd01868 63 ------------------------------------ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDH-A 105 (165)
T ss_pred ------------------------------------HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-C
Confidence 788888899999999999999999999999999999998776 3
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+... +.+..++...++. ...+.+++|||++|.||
T Consensus 106 ~~~~pi~vv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 106 DSNIVIMLVGNKSDLRHL-------------------------------RAVPTEEAKAFAE-KNGLSFIETSALDGTNV 153 (165)
T ss_pred CCCCeEEEEEECcccccc-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCCCH
Confidence 346899999999998765 5667777787776 45678999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 300 TQVFKELLVQA 310 (592)
Q Consensus 300 eeLf~~Li~~i 310 (592)
+++|+.++..+
T Consensus 154 ~~l~~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=1.3e-26 Score=219.36 Aligned_cols=163 Identities=30% Similarity=0.535 Sum_probs=142.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+..+||+++|++|||||||+++|+.+.+.+.+.++++ +.....+.+++..+.++||||+|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------ 64 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------------------ 64 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------------------
Confidence 4669999999999999999999999999888888887 566677888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..++..+++.+|++|+|||++++.||+.+..|+..+....
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 65 -------------------------------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred -------------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998887653
Q ss_pred c---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 219 A---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 219 ~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
. ..++|+++|+||+|+. . +.++.+++..+++......++++||++
T Consensus 108 ~~~~~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 108 DVKEPESFPFVVLGNKNDIP-E-------------------------------RQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred ccccCCCCcEEEEEECcccc-c-------------------------------cccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 2 2568999999999986 2 466778888888755456799999999
Q ss_pred CccHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQ 309 (592)
Q Consensus 296 g~gVeeLf~~Li~~ 309 (592)
|.||+++|+.+++.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 57
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=1.1e-26 Score=228.21 Aligned_cols=174 Identities=36% Similarity=0.559 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.|...+.+|+. +.+...+.+++..+.++||||+|.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP----------------- 63 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-----------------
Confidence 5899999999999999999999999988889987 5566677789999999999999982100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--c
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--A 219 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~ 219 (592)
.++. +++......+++.+|++|+|||++++.||+.+..|+..+.+.. .
T Consensus 64 -----------------------------~~~~-~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~ 113 (198)
T cd04142 64 -----------------------------GTAG-QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAG 113 (198)
T ss_pred -----------------------------ccch-hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccC
Confidence 0011 2233334456789999999999999999999999999887763 2
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+... +.++.+++..+++..+.++|++|||++|.||
T Consensus 114 ~~~~piiivgNK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v 162 (198)
T cd04142 114 NKEPPIVVVGNKRDQQRH-------------------------------RFAPRHVLSVLVRKSWKCGYLECSAKYNWHI 162 (198)
T ss_pred CCCCCEEEEEECcccccc-------------------------------ccccHHHHHHHHHHhcCCcEEEecCCCCCCH
Confidence 467999999999999754 4566666777765566789999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy1524 300 TQVFKELLVQAKVKY 314 (592)
Q Consensus 300 eeLf~~Li~~i~~~~ 314 (592)
+++|+.+++.+....
T Consensus 163 ~~lf~~i~~~~~~~~ 177 (198)
T cd04142 163 LLLFKELLISATTRG 177 (198)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999886543
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=2.3e-26 Score=225.31 Aligned_cols=167 Identities=28% Similarity=0.421 Sum_probs=146.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
++.+||+|+|++|||||||+++|.++.|...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~------------------ 65 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ------------------ 65 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4579999999999999999999999999888888887 666777888888899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.|..++..+++++|++|+|||+++++||+.+..|+..+...
T Consensus 66 -------------------------------------~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~- 107 (199)
T cd04110 66 -------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN- 107 (199)
T ss_pred -------------------------------------hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 788889999999999999999999999999999999988764
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
....|++|||||+|+... +.++.+++..+++ ..+..+++|||++|.|
T Consensus 108 -~~~~piivVgNK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 108 -CDDVCKVLVGNKNDDPER-------------------------------KVVETEDAYKFAG-QMGISLFETSAKENIN 154 (199)
T ss_pred -CCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCcC
Confidence 467899999999998754 4566777777776 3457899999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1524 299 ITQVFKELLVQAKVKYN 315 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~~ 315 (592)
|+++|+++++.+...+.
T Consensus 155 i~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 155 VEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999976543
No 59
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=7.6e-27 Score=221.59 Aligned_cols=171 Identities=26% Similarity=0.489 Sum_probs=142.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC 144 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~ 144 (592)
|+|+|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------------ 56 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ------------------------ 56 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCC------------------------
Confidence 68999999999999999999999988999998777778888999999999999999
Q ss_pred HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCCCC
Q psy1524 145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTAV 223 (592)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~~~ 223 (592)
++|..++..+++++|++|+|||+++++||+++. .|+..+... .+++
T Consensus 57 -------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~ 103 (174)
T smart00174 57 -------------------------------EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNT 103 (174)
T ss_pred -------------------------------cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCC
Confidence 777788888899999999999999999999996 488877664 3689
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|||+||+|+..+.... ..+ .....+.++.+++..+++......|++|||++|.||+++|
T Consensus 104 piilv~nK~Dl~~~~~~~--------~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 104 PIILVGTKLDLREDKSTL--------REL-----------SKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVF 164 (174)
T ss_pred CEEEEecChhhhhChhhh--------hhh-----------hcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH
Confidence 999999999997541100 000 0112256888899999886555589999999999999999
Q ss_pred HHHHHHHH
Q psy1524 304 KELLVQAK 311 (592)
Q Consensus 304 ~~Li~~i~ 311 (592)
+.+++.+.
T Consensus 165 ~~l~~~~~ 172 (174)
T smart00174 165 EEAIRAAL 172 (174)
T ss_pred HHHHHHhc
Confidence 99998874
No 60
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.8e-26 Score=217.70 Aligned_cols=165 Identities=25% Similarity=0.429 Sum_probs=144.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|.
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 63 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ------------------ 63 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4568999999999999999999999998887777776 566677888888899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|..+...+++.+|++|+|||++++.||.++..|+..+...
T Consensus 64 -------------------------------------~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~- 105 (168)
T cd01866 64 -------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH- 105 (168)
T ss_pred -------------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 788888889999999999999999999999999999988775
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..+++|+|+|+||+|+... +.++.+++..++. .....++++||++|.|
T Consensus 106 ~~~~~pvivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 106 SNSNMTIMLIGNKCDLESR-------------------------------REVSYEEGEAFAK-EHGLIFMETSAKTASN 153 (168)
T ss_pred CCCCCcEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence 3468999999999999754 4567777777776 4567899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
|+++|..+++.+.+
T Consensus 154 i~~~~~~~~~~~~~ 167 (168)
T cd01866 154 VEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988743
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.3e-26 Score=222.41 Aligned_cols=163 Identities=31% Similarity=0.464 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.|...+.+|++ +.....+.+++..+.+++|||+|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--------------------- 59 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--------------------- 59 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 5899999999999999999999999887888887 566677888888999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.|..++..+++++|++|+|||++++.||+.+..|+..+... ...
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~ 104 (188)
T cd04125 60 ----------------------------------ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARE 104 (188)
T ss_pred ----------------------------------HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence 778888899999999999999999999999999999988775 345
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+|+||+|+.+. +.++.+++..+++ ...+++++|||++|.||++
T Consensus 105 ~~~~ivv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 105 NVIKVIVANKSDLVNN-------------------------------KVVDSNIAKSFCD-SLNIPFFETSAKQSINVEE 152 (188)
T ss_pred CCeEEEEEECCCCccc-------------------------------ccCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence 6899999999999765 5667777777776 3456899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|+.+++.+...
T Consensus 153 ~f~~l~~~~~~~ 164 (188)
T cd04125 153 AFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 62
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=2.4e-26 Score=217.88 Aligned_cols=164 Identities=38% Similarity=0.595 Sum_probs=145.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+++|++|||||||+++|+++.+...+.+|+.+.+.+.+.+++..+.+++|||+|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--------------------- 59 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 37999999999999999999999999888899998777788888999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..+++.+|++|+|||++++++|+.+..|...+.+.....
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~ 105 (168)
T cd04177 60 ----------------------------------EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSD 105 (168)
T ss_pred ----------------------------------ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence 7888899999999999999999999999999999999888765566
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+|+||+|+... +.++.+++..+++.....+++++||++|.||++
T Consensus 106 ~~piiiv~nK~D~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 106 NVPMVLVGNKADLEDD-------------------------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred CCCEEEEEEChhcccc-------------------------------CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 8999999999998765 556667777777644347899999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 302 VFKELLVQAK 311 (592)
Q Consensus 302 Lf~~Li~~i~ 311 (592)
+|++++.++.
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 63
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=2.6e-26 Score=221.19 Aligned_cols=170 Identities=26% Similarity=0.423 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.|.+.+.+|+.+.+...+..+ +..+.++||||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--------------------- 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--------------------- 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc---------------------
Confidence 58999999999999999999999999889999886665566665 77889999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~ 220 (592)
++|..++..+++++|++|+|||++++.||+++.. |+..+... .
T Consensus 60 ----------------------------------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~ 103 (187)
T cd04132 60 ----------------------------------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--C 103 (187)
T ss_pred ----------------------------------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence 7888888889999999999999999999999975 77766543 4
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+|+|+||+|+..... ..+.++.+++..++.......+++|||++|.||+
T Consensus 104 ~~~piilv~nK~Dl~~~~~---------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 156 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKN---------------------------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVE 156 (187)
T ss_pred CCCCEEEEEeChhhhhCcc---------------------------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHH
Confidence 6799999999999975410 1146777888888874444489999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy1524 301 QVFKELLVQAKVKYNL 316 (592)
Q Consensus 301 eLf~~Li~~i~~~~~~ 316 (592)
++|..+++.+......
T Consensus 157 ~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 157 EVFDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999765543
No 64
>COG5045 Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-28 Score=205.20 Aligned_cols=84 Identities=35% Similarity=0.516 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524 367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 444 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~ 444 (592)
..||++||.+||||||+++| ++.+||++++ +||||.|+||||.+|+|||+||+||+||++|||+||+||+|+|
T Consensus 13 q~Lf~~gv~vakkDfnl~kH~el~ipNL~vik-----a~qsl~S~GYvkt~~~W~~~YytLT~eGveyLREyL~lp~e~V 87 (105)
T COG5045 13 QRLFQKGVAVAKKDFNLGKHRELEIPNLHVIK-----AMQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGV 87 (105)
T ss_pred HHHHHhhhhHhhhhccccCCcccCCCchHHHH-----HHHHHhhcceeEEEeeeeeeEEEecHHHHHHHHHHhcCccccC
Confidence 46999999999999999964 6666666665 8999999999999999999999999999999999999999999
Q ss_pred ccccccccccC
Q psy1524 445 PSTLKRQARTT 455 (592)
Q Consensus 445 p~~~~~~~~~~ 455 (592)
|+|.....++.
T Consensus 88 p~t~~~~v~pt 98 (105)
T COG5045 88 PSTEAPAVSPT 98 (105)
T ss_pred ccccccccCcc
Confidence 99999865554
No 65
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.1e-26 Score=227.74 Aligned_cols=176 Identities=23% Similarity=0.329 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHcC-----CCCCCccCcee--eeEEEE--------EeeCCeEEEEEEEeCCCCCCCCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIH-RFLYN-----TFSPKYKRTIE--EMHHED--------FSMNGVHLKLDILDTSGEQSGKG 125 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLIn-rL~~~-----~f~~~~~~Tt~--d~~~~~--------v~vdg~~v~L~I~DT~G~~~~~~ 125 (592)
.+||+++|++|||||||+. +++++ .|.+.+.||++ +.+... +.+++..+.++||||+|+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~----- 76 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGD----- 76 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCC-----
Confidence 4799999999999999996 66554 35567889985 434332 257899999999999998
Q ss_pred ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524 126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE 205 (592)
Q Consensus 126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe 205 (592)
++ .+...++++||++|+|||++++.||+
T Consensus 77 --------------------------------------------------~~--~~~~~~~~~ad~iilv~d~t~~~Sf~ 104 (195)
T cd01873 77 --------------------------------------------------HD--KDRRFAYGRSDVVLLCFSIASPNSLR 104 (195)
T ss_pred --------------------------------------------------hh--hhhcccCCCCCEEEEEEECCChhHHH
Confidence 22 13345789999999999999999999
Q ss_pred HHH-HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC
Q psy1524 206 EIR-LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW 284 (592)
Q Consensus 206 ~l~-~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~ 284 (592)
++. .|+..+... ..+.|+||||||+||.+...... .. ...+. .......+.|+.++++.+++ ..
T Consensus 105 ~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~---~~-----~~~~~----~~~~~~~~~V~~~e~~~~a~-~~ 169 (195)
T cd01873 105 NVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEV---NR-----ARRPL----ARPIKNADILPPETGRAVAK-EL 169 (195)
T ss_pred HHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchh---hh-----ccccc----ccccccCCccCHHHHHHHHH-Hh
Confidence 997 588888664 35789999999999965310000 00 00000 00001137899999999998 45
Q ss_pred CCeEEEcccCCCccHHHHHHHHHHH
Q psy1524 285 ENGFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 285 ~~~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
+++|+||||++|.||+++|+.++++
T Consensus 170 ~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 170 GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 6799999999999999999999864
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.4e-26 Score=223.38 Aligned_cols=166 Identities=29% Similarity=0.480 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
+||+|+|++|||||||+++|+.+.+. ..+.+|++ ++....+.+++..+.++||||+|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 60 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-------------------- 60 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 58999999999999999999999886 46777877 555566788999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
++|..+...+++.+|++|+|||++++.||+++..|+..+.+. ..
T Consensus 61 -----------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~ 104 (191)
T cd04112 61 -----------------------------------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQ 104 (191)
T ss_pred -----------------------------------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CC
Confidence 778888888999999999999999999999999999988876 34
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+... +.+..+++..+++ ....+|+++||++|.||+
T Consensus 105 ~~~piiiv~NK~Dl~~~-------------------------------~~~~~~~~~~l~~-~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 105 EDVVIMLLGNKADMSGE-------------------------------RVVKREDGERLAK-EYGVPFMETSAKTGLNVE 152 (191)
T ss_pred CCCcEEEEEEcccchhc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCCHH
Confidence 57899999999999754 5666777777776 456789999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy1524 301 QVFKELLVQAKVKYNL 316 (592)
Q Consensus 301 eLf~~Li~~i~~~~~~ 316 (592)
++|+.+++.+......
T Consensus 153 ~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 153 LAFTAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999765433
No 67
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2.1e-26 Score=229.59 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=140.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+|+|++|||||||+++|+.+.|...+.+|++ +.....+..++..+.+.||||+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 72 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ------------------ 72 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc------------------
Confidence 6679999999999999999999999999999999997 666667777888899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|..++..+++++|++|+|||++++.||+.+..|+..+...
T Consensus 73 -------------------------------------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~- 114 (219)
T PLN03071 73 -------------------------------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114 (219)
T ss_pred -------------------------------------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-
Confidence 788889999999999999999999999999999999999875
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+||||||+|+... .+..+++ .+++ ...+.|++|||++|.|
T Consensus 115 -~~~~piilvgNK~Dl~~~--------------------------------~v~~~~~-~~~~-~~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 115 -CENIPIVLCGNKVDVKNR--------------------------------QVKAKQV-TFHR-KKNLQYYEISAKSNYN 159 (219)
T ss_pred -CCCCcEEEEEEchhhhhc--------------------------------cCCHHHH-HHHH-hcCCEEEEcCCCCCCC
Confidence 367999999999998632 3333444 4544 4667899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+++++.+.
T Consensus 160 i~~~f~~l~~~~~ 172 (219)
T PLN03071 160 FEKPFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 68
>KOG0088|consensus
Probab=99.95 E-value=1.6e-27 Score=219.63 Aligned_cols=170 Identities=27% Similarity=0.468 Sum_probs=155.8
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
......|||+++|..-||||||+-||+.++|......|+. .+..+.+.+.+....+.||||+|+
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ--------------- 72 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ--------------- 72 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch---------------
Confidence 3456789999999999999999999999999988888887 677888999999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
|+|.++-+.||++++++|+|||++|++||+.++.|..+|+
T Consensus 73 ----------------------------------------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr 112 (218)
T KOG0088|consen 73 ----------------------------------------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELR 112 (218)
T ss_pred ----------------------------------------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
... ...+-+++||||+||.+. |+|+..+++++++ ..+..|+++||+.
T Consensus 113 ~ml-Gnei~l~IVGNKiDLEee-------------------------------R~Vt~qeAe~YAe-svGA~y~eTSAk~ 159 (218)
T KOG0088|consen 113 TML-GNEIELLIVGNKIDLEEE-------------------------------RQVTRQEAEAYAE-SVGALYMETSAKD 159 (218)
T ss_pred HHh-CCeeEEEEecCcccHHHh-------------------------------hhhhHHHHHHHHH-hhchhheeccccc
Confidence 874 456889999999999887 8999999999998 5566799999999
Q ss_pred CccHHHHHHHHHHHHHHhc
Q psy1524 296 NTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~ 314 (592)
+.||.|+|+.+...+.+..
T Consensus 160 N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 69
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=4.6e-26 Score=226.43 Aligned_cols=167 Identities=28% Similarity=0.443 Sum_probs=148.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.++.+||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~----------------- 71 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------------- 71 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 35679999999999999999999999999888888887 677788889999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
++|..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 72 --------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 113 (216)
T PLN03110 72 --------------------------------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH 113 (216)
T ss_pred --------------------------------------HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|+|+||+|+... +.++.+++..++. ...++|+++||++|.
T Consensus 114 -~~~~~piiiv~nK~Dl~~~-------------------------------~~~~~~~~~~l~~-~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 114 -ADSNIVIMMAGNKSDLNHL-------------------------------RSVAEEDGQALAE-KEGLSFLETSALEAT 160 (216)
T ss_pred -CCCCCeEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence 3467999999999999755 6677788888876 457889999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy1524 298 NITQVFKELLVQAKVK 313 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~ 313 (592)
||+++|+.++..+...
T Consensus 161 ~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 161 NVEKAFQTILLEIYHI 176 (216)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998653
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=3.4e-26 Score=217.53 Aligned_cols=162 Identities=27% Similarity=0.461 Sum_probs=142.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+++|++|||||||+++|+.+.+...+.+|++ +.....+.+++..+.++||||+|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 61 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ-------------------- 61 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh--------------------
Confidence 58999999999999999999999999888888887 666777888999999999999998
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++|. .+...+++++|++|+|||++++.||..+..|+..+.....
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (170)
T cd04115 62 -----------------------------------ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL 106 (170)
T ss_pred -----------------------------------HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC
Confidence 6665 4677889999999999999999999999999998887655
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC---C
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD---N 296 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt---g 296 (592)
..++|+|+|+||+|+... +.++.+++..+++ ...++|+||||++ +
T Consensus 107 ~~~~p~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~~ 154 (170)
T cd04115 107 PNEVPRILVGNKCDLREQ-------------------------------IQVPTDLAQRFAD-AHSMPLFETSAKDPSEN 154 (170)
T ss_pred CCCCCEEEEEECccchhh-------------------------------cCCCHHHHHHHHH-HcCCcEEEEeccCCcCC
Confidence 568999999999999765 6677788888877 4568899999999 8
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.||+++|..+++.+
T Consensus 155 ~~i~~~f~~l~~~~ 168 (170)
T cd04115 155 DHVEAIFMTLAHKL 168 (170)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=3.4e-26 Score=214.05 Aligned_cols=158 Identities=31% Similarity=0.518 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC--CeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN--GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd--g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+||+++|++|||||||+++|+++.+.+.+.+|+. +.....+.++ +..+.++||||+|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ------------------- 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-------------------
Confidence 5899999999999999999999999888888887 5556666776 77899999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++|..++..+++++|++++|||++++++|+.+..|+..+...
T Consensus 62 ------------------------------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~-- 103 (162)
T cd04106 62 ------------------------------------EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-- 103 (162)
T ss_pred ------------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--
Confidence 788889999999999999999999999999999999988653
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+... +.++.+++..+++ ..+.+++++||++|.|+
T Consensus 104 ~~~~p~iiv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 104 CGDIPMVLVQTKIDLLDQ-------------------------------AVITNEEAEALAK-RLQLPLFRTSVKDDFNV 151 (162)
T ss_pred CCCCCEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECCCCCCH
Confidence 468999999999999765 5667778888877 45678999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 300 TQVFKELLVQ 309 (592)
Q Consensus 300 eeLf~~Li~~ 309 (592)
+++|+.+...
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 72
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=3.8e-26 Score=217.16 Aligned_cols=160 Identities=24% Similarity=0.399 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|+.+.+...+.+|++ +.....+..++..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--------------------- 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 5999999999999999999999998888888887 566666677888899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.+..++..++..+|++|+|||++++.||+.+..|+..+.+.. .
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~ 103 (166)
T cd00877 60 ----------------------------------EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--G 103 (166)
T ss_pred ----------------------------------hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence 6677777788999999999999999999999999999998763 3
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+|+||+|+... .+.. +...+++ .....++||||++|.||++
T Consensus 104 ~~piiiv~nK~Dl~~~--------------------------------~~~~-~~~~~~~-~~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 104 NIPIVLCGNKVDIKDR--------------------------------KVKA-KQITFHR-KKNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCcEEEEEEchhcccc--------------------------------cCCH-HHHHHHH-HcCCEEEEEeCCCCCChHH
Confidence 8999999999999732 2222 3344544 4567899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|++|++.+.+.
T Consensus 150 ~f~~l~~~~~~~ 161 (166)
T cd00877 150 PFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
No 73
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=4.2e-26 Score=227.87 Aligned_cols=178 Identities=25% Similarity=0.324 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+.+.|.. +.+|++ +++...+ ..+.+.||||+|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~--------------------- 54 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGR--------------------- 54 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCc---------------------
Confidence 589999999999999999999999875 567776 4433322 4578899999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.|..+...+++++|++|+|||++++.||+++..|+..+.+. ...
T Consensus 55 ----------------------------------e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~ 99 (220)
T cd04126 55 ----------------------------------EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANE 99 (220)
T ss_pred ----------------------------------ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCC
Confidence 788889999999999999999999999999999998888765 346
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-------------CeE
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-------------NGF 288 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-------------~~~ 288 (592)
++|+||||||+||.+.....+.. .-+ ...-.....+.++.+++..+++.... +.|
T Consensus 100 ~~piIlVgNK~DL~~~~~~~~~~---------~~~---~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (220)
T cd04126 100 DCLFAVVGNKLDLTEEGALAGQE---------KDA---GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC 167 (220)
T ss_pred CCcEEEEEECccccccccccccc---------ccc---cccccccccccCCHHHHHHHHHHhCccccccccccccccceE
Confidence 78999999999997631100000 000 00011223588999999999885432 579
Q ss_pred EEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 289 VEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 289 ~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
+||||++|.||+++|..+++.+...
T Consensus 168 ~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 168 FETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=5.2e-26 Score=213.18 Aligned_cols=159 Identities=30% Similarity=0.460 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.++||||+|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------------------- 59 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch---------------------
Confidence 5999999999999999999999999888888877 566677788888899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.|..+...+++++|++|+|||++++.+|..+..|+..+... ..+
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~ 104 (161)
T cd04113 60 ----------------------------------ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL-ASP 104 (161)
T ss_pred ----------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence 778888888999999999999999999999999999988665 357
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+... +.++.+++..+++ .....++++||+++.||++
T Consensus 105 ~~~iivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 105 NIVVILVGNKSDLADQ-------------------------------REVTFLEASRFAQ-ENGLLFLETSALTGENVEE 152 (161)
T ss_pred CCeEEEEEEchhcchh-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHH
Confidence 8999999999999764 5677788888877 4458899999999999999
Q ss_pred HHHHHHHH
Q psy1524 302 VFKELLVQ 309 (592)
Q Consensus 302 Lf~~Li~~ 309 (592)
+|+++++.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 75
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=3.5e-26 Score=215.69 Aligned_cols=161 Identities=34% Similarity=0.564 Sum_probs=136.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|+.+.|...+.+|+...+...+.+++..+.++||||+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----------------------- 57 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQ----------------------- 57 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCC-----------------------
Confidence 699999999999999999999999888888887666777788999999999999998
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-CC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-ST 221 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-~~ 221 (592)
+. +......+++.+|++|+|||++++.||+.+..|+..+..... ..
T Consensus 58 --------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 105 (165)
T cd04146 58 --------------------------------QQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDR 105 (165)
T ss_pred --------------------------------cccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 223445678899999999999999999999999998887643 45
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-cHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-NIT 300 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-gVe 300 (592)
++|+|+|+||+|+... +.++.+++..+++. .+.+|++|||++|. ||+
T Consensus 106 ~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 106 EIPVILVGNKADLLHY-------------------------------RQVSTEEGEKLASE-LGCLFFEVSAAEDYDGVH 153 (165)
T ss_pred CCCEEEEEECCchHHh-------------------------------CccCHHHHHHHHHH-cCCEEEEeCCCCCchhHH
Confidence 7999999999998755 56777888888764 45789999999995 999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+++.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 76
>KOG0097|consensus
Probab=99.94 E-value=3.5e-26 Score=207.33 Aligned_cols=171 Identities=25% Similarity=0.377 Sum_probs=158.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
...+.+|.+|+|+-|||||+|+.+|...+|..+-+.|++ ++-++.+.+.|.+++++||||+|+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagq---------------- 70 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ---------------- 70 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccH----------------
Confidence 356789999999999999999999999999988888998 788899999999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
|+|+...+.|+++|.+.++|||++.+.++.++..|+...+.
T Consensus 71 ---------------------------------------erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ 111 (215)
T KOG0097|consen 71 ---------------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 111 (215)
T ss_pred ---------------------------------------HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhc
Confidence 99999999999999999999999999999999999998877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++.-|+++|||.||... |.|+.+++.+++. ..+..|+|+|||+|
T Consensus 112 l-tnpnt~i~lignkadle~q-------------------------------rdv~yeeak~fae-engl~fle~saktg 158 (215)
T KOG0097|consen 112 L-TNPNTVIFLIGNKADLESQ-------------------------------RDVTYEEAKEFAE-ENGLMFLEASAKTG 158 (215)
T ss_pred c-CCCceEEEEecchhhhhhc-------------------------------ccCcHHHHHHHHh-hcCeEEEEeccccc
Confidence 6 5788899999999999876 8899999999998 67788999999999
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q psy1524 297 TNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~~~ 316 (592)
.||++.|-+..+++.+..+.
T Consensus 159 ~nvedafle~akkiyqniqd 178 (215)
T KOG0097|consen 159 QNVEDAFLETAKKIYQNIQD 178 (215)
T ss_pred CcHHHHHHHHHHHHHHhhhc
Confidence 99999999999988766544
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=6.8e-26 Score=213.81 Aligned_cols=159 Identities=25% Similarity=0.412 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+.+.|.+.+.+++. +.+...+.+++..+.++||||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 5899999999999999999999999888777776 566666778889999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
++|..++..+++++|++|+|||++++.+|+++..|+..+... ..
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~ 103 (161)
T cd04124 60 ----------------------------------ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RP 103 (161)
T ss_pred ----------------------------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CC
Confidence 888889999999999999999999999999999999988764 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+... ..++...++. ....+++++||++|.||++
T Consensus 104 ~~p~ivv~nK~Dl~~~----------------------------------~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 104 EIPCIVVANKIDLDPS----------------------------------VTQKKFNFAE-KHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred CCcEEEEEECccCchh----------------------------------HHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence 7899999999998532 1123344444 3467899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|+.+++.+...
T Consensus 149 l~~~l~~~~~~~ 160 (161)
T cd04124 149 LFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHhc
Confidence 999999887543
No 78
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=1.1e-25 Score=222.73 Aligned_cols=167 Identities=26% Similarity=0.396 Sum_probs=147.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.+.+||+|+|++|||||||+++|+...|...+.+|++ ++....+.+++..+.+++|||+|+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~------------------ 65 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------------------ 65 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4679999999999999999999999999888888887 566777888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.|..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 66 -------------------------------------~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~- 107 (210)
T PLN03108 66 -------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH- 107 (210)
T ss_pred -------------------------------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh-
Confidence 778888888999999999999999999999999999887665
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+|+|+||+|+... +.++.++++.+++ ..+++|+++||+++.|
T Consensus 108 ~~~~~piiiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 108 ANANMTIMLIGNKCDLAHR-------------------------------RAVSTEEGEQFAK-EHGLIFMEASAKTAQN 155 (210)
T ss_pred cCCCCcEEEEEECccCccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence 3467999999999999765 5678888888887 4567899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1524 299 ITQVFKELLVQAKVKY 314 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~ 314 (592)
|+++|+++++.+..+.
T Consensus 156 v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 156 VEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987553
No 79
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=4e-26 Score=217.65 Aligned_cols=170 Identities=24% Similarity=0.416 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+++|++|||||||+++|..+.|...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ---------------------- 58 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCC----------------------
Confidence 5899999999999999999999999999999998888788889998999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~ 221 (592)
++|..++..+++++|++|+|||++++.||+++. .|+..+... ..
T Consensus 59 ---------------------------------~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~ 103 (173)
T cd04130 59 ---------------------------------DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NP 103 (173)
T ss_pred ---------------------------------hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence 677777788899999999999999999999985 577777653 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+...... ...-.....+.+..+++..+++......|++|||++|.||++
T Consensus 104 ~~piilv~nK~Dl~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 104 KAPIILVGTQADLRTDVNV-------------------LIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKE 164 (173)
T ss_pred CCCEEEEeeChhhccChhH-------------------HHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHH
Confidence 7999999999998653100 000011123778889999998855555899999999999999
Q ss_pred HHHHHHH
Q psy1524 302 VFKELLV 308 (592)
Q Consensus 302 Lf~~Li~ 308 (592)
+|+.++-
T Consensus 165 lf~~~~~ 171 (173)
T cd04130 165 VFDTAIL 171 (173)
T ss_pred HHHHHHh
Confidence 9998864
No 80
>KOG0081|consensus
Probab=99.94 E-value=1.7e-27 Score=219.74 Aligned_cols=169 Identities=22% Similarity=0.388 Sum_probs=155.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee---------CCeEEEEEEEeCCCCCCCCccc
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM---------NGVHLKLDILDTSGEQSGKGLK 127 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v---------dg~~v~L~I~DT~G~~~~~~~~ 127 (592)
..++.+|.+.+|++||||||++.+++.++|......|++ |+..+.+.. .+..+.+++|||+|+
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ------- 77 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ------- 77 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-------
Confidence 467889999999999999999999999999998888988 777777765 245789999999999
Q ss_pred ccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH
Q psy1524 128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI 207 (592)
Q Consensus 128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l 207 (592)
|+|+++...++++|-+++++||+++..||-++
T Consensus 78 ------------------------------------------------ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv 109 (219)
T KOG0081|consen 78 ------------------------------------------------ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV 109 (219)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhhccceEEEeccchHHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe
Q psy1524 208 RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287 (592)
Q Consensus 208 ~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~ 287 (592)
..|+..|.-+..++++-||++|||+||.+. |.|+.+++.+++. ..+.+
T Consensus 110 rnWlSQL~~hAYcE~PDivlcGNK~DL~~~-------------------------------R~Vs~~qa~~La~-kyglP 157 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCENPDIVLCGNKADLEDQ-------------------------------RVVSEDQAAALAD-KYGLP 157 (219)
T ss_pred HHHHHHHHHhhccCCCCEEEEcCccchhhh-------------------------------hhhhHHHHHHHHH-HhCCC
Confidence 999999999888999999999999999887 8999999999998 78899
Q ss_pred EEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 288 FVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 288 ~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
|||+||.+|.||++..+-++..+.+.
T Consensus 158 YfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 158 YFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred eeeeccccCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999888877554
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=6.7e-26 Score=215.11 Aligned_cols=172 Identities=23% Similarity=0.425 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+.+.|.+.+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ---------------------- 58 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5899999999999999999999999988999988777778888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~ 221 (592)
+.|..++..++.++|++|+|||++++.+|+.+. .|+..+... ..
T Consensus 59 ---------------------------------~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~ 103 (174)
T cd04135 59 ---------------------------------EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--AP 103 (174)
T ss_pred ---------------------------------ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence 566667777889999999999999999999996 466666543 56
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+.+...... .......+.++.+++..+++......|++|||++|.||++
T Consensus 104 ~~piivv~nK~Dl~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 104 NVPYLLVGTQIDLRDDPKTLA-------------------RLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKT 164 (174)
T ss_pred CCCEEEEeEchhhhcChhhHH-------------------HHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHH
Confidence 899999999999865421000 0011123578888999998865556799999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+.+++.+
T Consensus 165 ~f~~~~~~~ 173 (174)
T cd04135 165 VFDEAILAI 173 (174)
T ss_pred HHHHHHHHh
Confidence 999999876
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=2.1e-25 Score=209.41 Aligned_cols=159 Identities=26% Similarity=0.408 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+||+++|++|||||||+++|..+ .|...+.+|++ +.....+.++ +..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------------------ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------------------
Confidence 58999999999999999999965 68888999987 6666666664 67799999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.+..+...++.++|++++|||++++.+|+.+..|+..+....
T Consensus 63 -------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (164)
T cd04101 63 -------------------------------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS 105 (164)
T ss_pred -------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 7888888999999999999999999999999999999887652
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.++|+|+|+||+|+... +.++..++..+.. ...+.+++|||++|.|
T Consensus 106 --~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 151 (164)
T cd04101 106 --KHMPGVLVGNKMDLADK-------------------------------AEVTDAQAQAFAQ-ANQLKFFKTSALRGVG 151 (164)
T ss_pred --CCCCEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence 57899999999999755 4556656666654 4557899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 152 i~~l~~~l~~~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred hHHHHHHHHHHh
Confidence 999999998875
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=5.1e-25 Score=217.52 Aligned_cols=171 Identities=26% Similarity=0.420 Sum_probs=141.3
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
+......+||+|+|++|||||||+++|+++.+. .+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------- 72 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ-------------- 72 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCc--------------
Confidence 444566799999999999999999999988774 5667776 555667778888899999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH-HH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR-DH 213 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l-~~ 213 (592)
++|..++..+++.+|++|+|||++++.+|+++..++ ..
T Consensus 73 -----------------------------------------~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~ 111 (211)
T PLN03118 73 -----------------------------------------ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKE 111 (211)
T ss_pred -----------------------------------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999998744 44
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
+.......+.|+|+|+||+|+... +.++.+++..++. ...+.|++|||
T Consensus 112 ~~~~~~~~~~~~ilv~NK~Dl~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~e~SA 159 (211)
T PLN03118 112 VELYSTNQDCVKMLVGNKVDRESE-------------------------------RDVSREEGMALAK-EHGCLFLECSA 159 (211)
T ss_pred HHHhcCCCCCCEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCEEEEEeC
Confidence 443323456899999999999765 4566677777766 45678999999
Q ss_pred CCCccHHHHHHHHHHHHHHhc
Q psy1524 294 KDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~~ 314 (592)
++|.||+++|+.+++.+....
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999996654
No 84
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=2.8e-25 Score=215.32 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
+||+|+|++|||||||+++|+++.|.. .+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~-------------------- 60 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS-------------------- 60 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 589999999999999999999998874 6888887 455667889999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..+...++.++|++|+|||+++..||+++..|+..+... .
T Consensus 61 -----------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~ 103 (193)
T cd04118 61 -----------------------------------ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--E 103 (193)
T ss_pred -----------------------------------hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--C
Confidence 677778888899999999999999999999999999988764 3
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.+.|+++|+||+|+..... ..+.+..+++..++. .....++++||++|.||+
T Consensus 104 ~~~piilv~nK~Dl~~~~~---------------------------~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~ 155 (193)
T cd04118 104 EHCKIYLCGTKSDLIEQDR---------------------------SLRQVDFHDVQDFAD-EIKAQHFETSSKTGQNVD 155 (193)
T ss_pred CCCCEEEEEEccccccccc---------------------------ccCccCHHHHHHHHH-HcCCeEEEEeCCCCCCHH
Confidence 5789999999999865310 114566667777765 445779999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1524 301 QVFKELLVQAKVK 313 (592)
Q Consensus 301 eLf~~Li~~i~~~ 313 (592)
++|+.+++.+...
T Consensus 156 ~l~~~i~~~~~~~ 168 (193)
T cd04118 156 ELFQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988643
No 85
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=3e-25 Score=207.20 Aligned_cols=162 Identities=33% Similarity=0.621 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+++|++|||||||+++|+.+.+...+.+++.+.+.+...+++..+.+++|||+|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------------- 58 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 5899999999999999999999999988999998888888888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
+++..++..+++.+|++++|||++++.+|..+..|+..+.......+
T Consensus 59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 105 (164)
T cd04139 59 ---------------------------------EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDN 105 (164)
T ss_pred ---------------------------------hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 67778888899999999999999999999999999998888755568
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+|+++|+||+|+... +.+..++...+++ .++.+++++||++|.||+++
T Consensus 106 ~piiiv~NK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 106 VPLLLVGNKCDLEDK-------------------------------RQVSSEEAANLAR-QWGVPYVETSAKTRQNVEKA 153 (164)
T ss_pred CCEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEeeCCCCCCHHHH
Confidence 999999999999753 2344555566655 45678999999999999999
Q ss_pred HHHHHHHHH
Q psy1524 303 FKELLVQAK 311 (592)
Q Consensus 303 f~~Li~~i~ 311 (592)
|+.+++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T cd04139 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHH
Confidence 999998774
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.1e-25 Score=214.89 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=133.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+.+||+|+|++|||||||+++|+++.|. ..+.+|+++ +....+.+++..+.+.+||++|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~----------------- 64 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED----------------- 64 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCc-----------------
Confidence 35799999999999999999999999998 889999984 44566788898889999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..+...+++++|++|+|||++++.+|+.+..|+..+..
T Consensus 65 --------------------------------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~- 105 (169)
T cd01892 65 --------------------------------------EVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM- 105 (169)
T ss_pred --------------------------------------ccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc-
Confidence 66777778889999999999999999999999888876532
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..++|+++|+||+|+.+. +.+..++...+++......++++||++|.
T Consensus 106 --~~~~p~iiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 106 --LGEIPCLFVAAKADLDEQ-------------------------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred --CCCCeEEEEEEccccccc-------------------------------ccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 247899999999999654 22333344555553322346999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+++.+.
T Consensus 153 ~v~~lf~~l~~~~~ 166 (169)
T cd01892 153 SSNELFTKLATAAQ 166 (169)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999998874
No 87
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=2.5e-25 Score=217.59 Aligned_cols=175 Identities=60% Similarity=0.989 Sum_probs=147.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|+.+.+...+.+|+.+.....+.+++..+.++||||+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------------------- 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS----------------------- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCc-----------------------
Confidence 699999999999999999999999888888888777778888998899999999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+.|..++..++..+|++|+|||++++.+|+.+..|+..+.+.....++
T Consensus 58 --------------------------------~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 105 (198)
T cd04147 58 --------------------------------YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFV 105 (198)
T ss_pred --------------------------------hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 777888888999999999999999999999999999988886555679
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|+|+||+|+.... +.+..+++.......+...++++||++|.||+++|
T Consensus 106 piilv~NK~Dl~~~~------------------------------~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 106 PIVVVGNKADSLEEE------------------------------RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred cEEEEEEcccccccc------------------------------ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 999999999986531 34444455444433455679999999999999999
Q ss_pred HHHHHHHHHhcccChhhhhh
Q psy1524 304 KELLVQAKVKYNLSPALRRR 323 (592)
Q Consensus 304 ~~Li~~i~~~~~~~~~~~~~ 323 (592)
+++++.+.......+...+.
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~ 175 (198)
T cd04147 156 KELLRQANLPYNLSPALRRR 175 (198)
T ss_pred HHHHHHhhcccccchhhHHH
Confidence 99999997776666654443
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=4.3e-25 Score=206.44 Aligned_cols=161 Identities=35% Similarity=0.552 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|.+..+...+.+++. +.....+.+++..+.+++||++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------- 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--------------------- 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 5999999999999999999999988877777777 556677788888889999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+++..+...+++.+|++|+|||++++.+++.+..|+..+.... ..
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~ 104 (164)
T smart00175 60 ----------------------------------ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DP 104 (164)
T ss_pred ----------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence 7788888899999999999999999999999999999887763 36
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+... +.+..+.+..+++ ..++.++++||++|.|+++
T Consensus 105 ~~pivvv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 105 NVVIMLVGNKSDLEDQ-------------------------------RQVSREEAEAFAE-EHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred CCeEEEEEEchhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence 8999999999998754 4566677777776 4567899999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 302 VFKELLVQAK 311 (592)
Q Consensus 302 Lf~~Li~~i~ 311 (592)
+|+.+++.+.
T Consensus 153 l~~~i~~~~~ 162 (164)
T smart00175 153 AFEELAREIL 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 89
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.93 E-value=2.2e-25 Score=219.53 Aligned_cols=155 Identities=23% Similarity=0.375 Sum_probs=135.1
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHH
Q psy1524 68 MGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLR 146 (592)
Q Consensus 68 vG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~ 146 (592)
+|++|||||||+++|+.+.|...+.+|++ +.....+.+++..+.++||||+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~-------------------------- 54 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ-------------------------- 54 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--------------------------
Confidence 69999999999999999999888999997 677777888999999999999999
Q ss_pred HhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEE
Q psy1524 147 RALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIV 226 (592)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PII 226 (592)
++|..++..|++++|++|+|||++++.||+.+..|+..+.+. ..++|+|
T Consensus 55 -----------------------------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~pii 103 (200)
T smart00176 55 -----------------------------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIV 103 (200)
T ss_pred -----------------------------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEE
Confidence 889999999999999999999999999999999999999875 3589999
Q ss_pred EEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHH
Q psy1524 227 VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL 306 (592)
Q Consensus 227 LVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~L 306 (592)
|||||+|+... .+..+. ..+++ ...+.|+||||++|.||+++|+++
T Consensus 104 lvgNK~Dl~~~--------------------------------~v~~~~-~~~~~-~~~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 104 LCGNKVDVKDR--------------------------------KVKAKS-ITFHR-KKNLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred EEEECcccccc--------------------------------cCCHHH-HHHHH-HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999998532 333333 34544 456789999999999999999999
Q ss_pred HHHHHHh
Q psy1524 307 LVQAKVK 313 (592)
Q Consensus 307 i~~i~~~ 313 (592)
++.+...
T Consensus 150 ~~~i~~~ 156 (200)
T smart00176 150 ARKLIGD 156 (200)
T ss_pred HHHHHhc
Confidence 9988543
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=3.6e-25 Score=206.96 Aligned_cols=159 Identities=31% Similarity=0.569 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|++..+...+.+++. +.....+.+++..+.+++|||+|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--------------------- 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 4899999999999999999999998877777777 777888888888889999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+... ...
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~ 104 (161)
T cd01861 60 ----------------------------------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE-RGN 104 (161)
T ss_pred ----------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence 778888888999999999999999999999999999988665 234
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+... +.+..++...+++ ..+..++++||++|.|+++
T Consensus 105 ~~~iilv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 105 DVIIVLVGNKTDLSDK-------------------------------RQVSTEEGEKKAK-ELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred CCEEEEEEEChhcccc-------------------------------CccCHHHHHHHHH-HhCCEEEEEeCCCCCCHHH
Confidence 7999999999999644 4566677777766 4457899999999999999
Q ss_pred HHHHHHHH
Q psy1524 302 VFKELLVQ 309 (592)
Q Consensus 302 Lf~~Li~~ 309 (592)
+|+++++.
T Consensus 153 l~~~i~~~ 160 (161)
T cd01861 153 LFRKIASA 160 (161)
T ss_pred HHHHHHHh
Confidence 99999874
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=5.9e-25 Score=205.89 Aligned_cols=161 Identities=29% Similarity=0.482 Sum_probs=140.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.+|||+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~-------------------- 60 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ-------------------- 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--------------------
Confidence 37999999999999999999999999887788877 466778889999999999999998
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 61 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~ 104 (163)
T cd01860 61 -----------------------------------ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-S 104 (163)
T ss_pred -----------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C
Confidence 7788888889999999999999999999999999999988763 4
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
...|+|+|+||+|+... +.+..++...++. .....++++||++|.|++
T Consensus 105 ~~~~iivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 105 PNIIIALVGNKADLESK-------------------------------RQVSTEEAQEYAD-ENGLLFFETSAKTGENVN 152 (163)
T ss_pred CCCeEEEEEECcccccc-------------------------------CcCCHHHHHHHHH-HcCCEEEEEECCCCCCHH
Confidence 77999999999998754 4556667777766 345789999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+++++.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 92
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=4e-25 Score=220.61 Aligned_cols=162 Identities=26% Similarity=0.450 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
+||+|+|++|||||||+++|+.+.+. ..+.++.. +.+.+.+.+++..+.+.||||+|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~-------------------- 60 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQ-------------------- 60 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 58999999999999999999988886 67777776 777888889999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh-cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS-SADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+ ..+...++. ++|++|+|||++|+.||+.+..|+..+.....
T Consensus 61 -----------------------------------~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~ 103 (221)
T cd04148 61 -----------------------------------E--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ 103 (221)
T ss_pred -----------------------------------c--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3 122334556 89999999999999999999999998877644
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+... +.++.+++..++. ...+.|++|||++|.||
T Consensus 104 ~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 104 LEDRPIILVGNKSDLARS-------------------------------REVSVQEGRACAV-VFDCKFIETSAGLQHNV 151 (221)
T ss_pred CCCCCEEEEEEChhcccc-------------------------------ceecHHHHHHHHH-HcCCeEEEecCCCCCCH
Confidence 468999999999999765 5677777777766 45678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1524 300 TQVFKELLVQAKVK 313 (592)
Q Consensus 300 eeLf~~Li~~i~~~ 313 (592)
+++|+.+++.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (221)
T cd04148 152 DELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998543
No 93
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=9.3e-25 Score=206.07 Aligned_cols=165 Identities=30% Similarity=0.525 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|.+..+...+.+|+. +.....+.+++..+.+++||++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--------------------- 59 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh---------------------
Confidence 5899999999999999999999998888888877 666777888998999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-- 219 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-- 219 (592)
+.+..++..+++++|++|+|||++++.+|+++..|...+.....
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
T cd01862 60 ----------------------------------ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPS 105 (172)
T ss_pred ----------------------------------HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCcc
Confidence 77788888899999999999999999999999888887765432
Q ss_pred -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+++|+||+|+..+ +.++.++...+.+......++++||++|.|
T Consensus 106 ~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 106 DPENFPFVVLGNKIDLEEK-------------------------------RQVSTKKAQQWCQSNGNIPYFETSAKEAIN 154 (172)
T ss_pred CCCCceEEEEEECcccccc-------------------------------cccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence 237899999999999754 345566666776644457899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
++++|+.+++.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=4.5e-25 Score=209.65 Aligned_cols=172 Identities=26% Similarity=0.445 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
.||+|+|++|||||||+++|.++.|.+.+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ---------------------- 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5999999999999999999999999988999998776677788999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~~ 221 (592)
+.|..++..++.++|++++|||++++++|+++.. |+..+... ..
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~ 104 (175)
T cd01870 60 ---------------------------------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP 104 (175)
T ss_pred ---------------------------------hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence 6666666667899999999999999999999864 66666553 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+....... ..+ .....+.+..++++.+++......+++|||++|.||++
T Consensus 105 ~~piilv~nK~Dl~~~~~~~--------~~i-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 105 NVPIILVGNKKDLRNDEHTR--------REL-----------AKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVRE 165 (175)
T ss_pred CCCEEEEeeChhcccChhhh--------hhh-----------hhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHH
Confidence 78999999999987541100 000 01112456677888888755556899999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+.+++.+
T Consensus 166 lf~~l~~~~ 174 (175)
T cd01870 166 VFEMATRAA 174 (175)
T ss_pred HHHHHHHHh
Confidence 999998765
No 95
>KOG0083|consensus
Probab=99.93 E-value=8.8e-27 Score=209.40 Aligned_cols=160 Identities=29% Similarity=0.463 Sum_probs=146.6
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 66 VVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 66 vIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+++|++++|||+|+-||..+.|. .+...|++ |+-.+.+.+++.++++++|||+|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------------------- 57 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------------------- 57 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch-----------------------
Confidence 37899999999999999988876 45567777 888888899999999999999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
|+|++....||++||+++++||++|+.||++++.|+.+|.++ ....+
T Consensus 58 --------------------------------erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey-~k~~v 104 (192)
T KOG0083|consen 58 --------------------------------ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAV 104 (192)
T ss_pred --------------------------------HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhH
Confidence 999999999999999999999999999999999999999997 56788
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
.+.++|||||+... |.|..++++.+++ ...++|+|+|||+|.||+-.|
T Consensus 105 ~l~llgnk~d~a~e-------------------------------r~v~~ddg~kla~-~y~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 105 ALMLLGNKCDLAHE-------------------------------RAVKRDDGEKLAE-AYGIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred hHhhhccccccchh-------------------------------hccccchHHHHHH-HHCCCceeccccccccHhHHH
Confidence 99999999999877 7888899999988 788999999999999999999
Q ss_pred HHHHHHHHHh
Q psy1524 304 KELLVQAKVK 313 (592)
Q Consensus 304 ~~Li~~i~~~ 313 (592)
..|.+.+.+.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=1.5e-24 Score=201.83 Aligned_cols=160 Identities=29% Similarity=0.494 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+.+..+.+.+|||+|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--------------------- 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch---------------------
Confidence 5899999999999999999999988877777775 455666777788889999999998
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.+..++..++.++|++++|||++++++++.+..|+..+.... ..
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~ 104 (162)
T cd04123 60 ----------------------------------ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR-GN 104 (162)
T ss_pred ----------------------------------HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence 7778888888999999999999999999999999999887763 34
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+... +.+..++...+++ .....+++|||++|.|+++
T Consensus 105 ~~piiiv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 105 NISLVIVGNKIDLERQ-------------------------------RVVSKSEAEEYAK-SVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred CCeEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence 7999999999998754 4556666666665 4567799999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+|+++++.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998865
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=1.5e-24 Score=202.99 Aligned_cols=159 Identities=27% Similarity=0.473 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|++|||||||+++|++..+...+.++++ +.....+.+++..+.+.||||+|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 5899999999999999999999988877778877 555566778888899999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+.......
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 105 (161)
T cd01863 60 ----------------------------------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNN 105 (161)
T ss_pred ----------------------------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCC
Confidence 6777777888999999999999999999999999999888875567
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+... .+..++...+++ ...++++++||++|.|+++
T Consensus 106 ~~~~~iv~nK~D~~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 106 DIVKMLVGNKIDKENR--------------------------------EVTREEGLKFAR-KHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred CCcEEEEEECCccccc--------------------------------ccCHHHHHHHHH-HcCCEEEEEecCCCCCHHH
Confidence 8999999999999732 345566777776 4578899999999999999
Q ss_pred HHHHHHHH
Q psy1524 302 VFKELLVQ 309 (592)
Q Consensus 302 Lf~~Li~~ 309 (592)
+|+.+++.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd01863 153 AFEELVEK 160 (161)
T ss_pred HHHHHHHh
Confidence 99998875
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.93 E-value=1.7e-24 Score=209.67 Aligned_cols=178 Identities=26% Similarity=0.428 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
.||+|+|++|||||||+++|..+.+.+.+.+|+.+.+...+.+++..+.+.+|||+|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~---------------------- 59 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ---------------------- 59 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC----------------------
Confidence 5999999999999999999998888888888887766677788888899999999998
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~ 221 (592)
+.+..+...++..+|++|+|||+++.++|+.+. .|+..+... ..
T Consensus 60 ---------------------------------~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~ 104 (187)
T cd04129 60 ---------------------------------EEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CP 104 (187)
T ss_pred ---------------------------------hhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 444444455678999999999999999999997 488877654 35
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+|+||||+|+....... ......+.++.+++..+++......||+|||++|.||++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 105 NVPVILVGLKKDLRQDAVAK---------------------EEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDD 163 (187)
T ss_pred CCCEEEEeeChhhhhCcccc---------------------cccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHH
Confidence 79999999999986431000 001123667778888888755456899999999999999
Q ss_pred HHHHHHHHHHHhcccCh
Q psy1524 302 VFKELLVQAKVKYNLSP 318 (592)
Q Consensus 302 Lf~~Li~~i~~~~~~~~ 318 (592)
+|+.+++.+...++..|
T Consensus 164 ~f~~l~~~~~~~~~~~~ 180 (187)
T cd04129 164 VFEAATRAALLVRKSEP 180 (187)
T ss_pred HHHHHHHHHhcccCccc
Confidence 99999998876655443
No 99
>KOG0393|consensus
Probab=99.92 E-value=1.1e-25 Score=218.55 Aligned_cols=180 Identities=26% Similarity=0.452 Sum_probs=156.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+|++|||+.+||||+|+..|..+.|.+.|.||+-|.+...+.++ ++.+.+.+|||+|+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGq------------------ 63 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQ------------------ 63 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCC------------------
Confidence 35689999999999999999999999999999999999999999995 99999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~ 217 (592)
|+|..++...|.++|++|+||+++++.||+++.. |+.++..+
T Consensus 64 -------------------------------------edYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~ 106 (198)
T KOG0393|consen 64 -------------------------------------EDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH 106 (198)
T ss_pred -------------------------------------cccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence 7888888889999999999999999999999755 99988875
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
+++.|+||||+|.||.++...+ ..+. ......|+.+++..+++......|+||||++..
T Consensus 107 --cp~vpiiLVGtk~DLr~d~~~~--------~~l~-----------~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~ 165 (198)
T KOG0393|consen 107 --CPNVPIILVGTKADLRDDPSTL--------EKLQ-----------RQGLEPVTYEQGLELAKEIGAVKYLECSALTQK 165 (198)
T ss_pred --CCCCCEEEEeehHHhhhCHHHH--------HHHH-----------hccCCcccHHHHHHHHHHhCcceeeeehhhhhC
Confidence 5899999999999999652110 0111 113367899999999998888999999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q psy1524 298 NITQVFKELLVQAKVKYN 315 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~ 315 (592)
|+.++|+..++.++...+
T Consensus 166 ~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 166 GVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred CcHHHHHHHHHHHhcccc
Confidence 999999999999866543
No 100
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=4.6e-24 Score=201.32 Aligned_cols=163 Identities=30% Similarity=0.463 Sum_probs=139.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+++|++|||||||+++|+.+.+...+.+|++ +.....+.+++..+.+.+||++|+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ------------------ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4568999999999999999999998888877777776 677777888998899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.|..+...++..+|++|+|||+++..+|+.+..|+..+...
T Consensus 67 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~- 108 (169)
T cd04114 67 -------------------------------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY- 108 (169)
T ss_pred -------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence 677888888999999999999999999999999999888765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+... +.+..+....+.+ .....+++|||++|.|
T Consensus 109 ~~~~~~~i~v~NK~D~~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 109 ANNKVITILVGNKIDLAER-------------------------------REVSQQRAEEFSD-AQDMYYLETSAKESDN 156 (169)
T ss_pred CCCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEeeCCCCCC
Confidence 3457999999999998755 4556566666665 3447799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
++++|+.+++.+
T Consensus 157 v~~l~~~i~~~~ 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=3.5e-24 Score=198.87 Aligned_cols=159 Identities=47% Similarity=0.743 Sum_probs=140.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|++..+...+.+++.+.+...+.+++..+.+++||++|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------------------- 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ----------------------- 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCCh-----------------------
Confidence 699999999999999999999889888999988877888888888899999999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+.+..+...++..+|++++|||++++.+++++..|+..+........+
T Consensus 58 --------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 105 (160)
T cd00876 58 --------------------------------EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDI 105 (160)
T ss_pred --------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 667788888899999999999999999999999999988887544689
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+++|+||+|+... +.++.+++..+++ ....+++++||+++.||+++|
T Consensus 106 p~ivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 106 PIVLVGNKCDLENE-------------------------------RQVSKEEGKALAK-EWGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred cEEEEEECCccccc-------------------------------ceecHHHHHHHHH-HcCCcEEEeccCCCCCHHHHH
Confidence 99999999999764 4556677777776 344789999999999999999
Q ss_pred HHHHHH
Q psy1524 304 KELLVQ 309 (592)
Q Consensus 304 ~~Li~~ 309 (592)
+.|++.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999875
No 102
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=6.3e-24 Score=203.12 Aligned_cols=165 Identities=32% Similarity=0.572 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
.||+|+|++|||||||+++|....+...+.+|+.+.+...+.+++..+.+++|||+|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~---------------------- 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ---------------------- 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 5999999999999999999999999888888888766777888888889999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
++|..+...++..+|++|+|||+++..+|+.+..|+..+.+.....+
T Consensus 60 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (180)
T cd04137 60 ---------------------------------DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKES 106 (180)
T ss_pred ---------------------------------HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 77888888899999999999999999999999999998887655567
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
.|+|+|+||+|+... +.+..++...+++ ....+++++||++|.|++++
T Consensus 107 ~p~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 107 VPIVLVGNKSDLHTQ-------------------------------RQVSTEEGKELAE-SWGAAFLESSARENENVEEA 154 (180)
T ss_pred CCEEEEEEchhhhhc-------------------------------CccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHH
Confidence 899999999998654 4455555666655 45578999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy1524 303 FKELLVQAKVKY 314 (592)
Q Consensus 303 f~~Li~~i~~~~ 314 (592)
|.++++.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999999886543
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=2.9e-24 Score=204.91 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||+++|..+.+.. +.+|++... ..+.. ..+.+++|||+|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~-------------------- 63 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQ-------------------- 63 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE--CCEEEEEEECCCC--------------------
Confidence 45899999999999999999999887753 567776322 22333 4578889999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..++..++.+||++|+|||++++.+|+++..|+..+......
T Consensus 64 -----------------------------------~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~ 108 (168)
T cd04149 64 -----------------------------------DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREM 108 (168)
T ss_pred -----------------------------------HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhh
Confidence 788888999999999999999999999999998888777653333
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN 296 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg 296 (592)
.++|++||+||+|+.+. ++.+++...... .....+++|||++|
T Consensus 109 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 109 RDALLLVFANKQDLPDA---------------------------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred cCCcEEEEEECcCCccC---------------------------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 57899999999998642 234455544321 12236899999999
Q ss_pred ccHHHHHHHHHH
Q psy1524 297 TNITQVFKELLV 308 (592)
Q Consensus 297 ~gVeeLf~~Li~ 308 (592)
.||+++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=8.7e-24 Score=204.24 Aligned_cols=168 Identities=17% Similarity=0.260 Sum_probs=131.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+||+++|++|||||||+++|+.+.+... .+|++ +.....+.+ ++..+.+++|||+|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ------------------- 62 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCc-------------------
Confidence 48999999999999999999998888754 56665 333444444 446788999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..+++++|++|+|||+++..+++.+..|+..+.....
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~ 106 (183)
T cd04152 63 ------------------------------------EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE 106 (183)
T ss_pred ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh
Confidence 78888999999999999999999999999999888888776544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----cCCCeEEEcccC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----DWENGFVEASAK 294 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~~~~~~~EvSAk 294 (592)
..++|+++|+||+|+... +..++...+... .....+++|||+
T Consensus 107 ~~~~p~iiv~NK~D~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 107 NQGVPVLVLANKQDLPNA---------------------------------LSVSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred cCCCcEEEEEECcCcccc---------------------------------CCHHHHHHHhCccccCCCCceEEEEeecc
Confidence 467999999999998643 122333333221 112458899999
Q ss_pred CCccHHHHHHHHHHHHHHhcccCh
Q psy1524 295 DNTNITQVFKELLVQAKVKYNLSP 318 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~~~~~ 318 (592)
+|.||+++|+.|++.+.......+
T Consensus 154 ~~~gi~~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 154 IGEGLQEGLEKLYEMILKRRKMLR 177 (183)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999976555443
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=7.9e-24 Score=199.55 Aligned_cols=169 Identities=26% Similarity=0.492 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+++.+...+.+++.+.+...+.+++..+.+++|||+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~---------------------- 58 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQ---------------------- 58 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5999999999999999999999999888888888777777888999999999999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~~ 221 (592)
+++..+...+++.+|++++|||++++.+|..+.. |+..+... ..
T Consensus 59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 103 (171)
T cd00157 59 ---------------------------------EEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CP 103 (171)
T ss_pred ---------------------------------ccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence 5555666667889999999999999999988765 55555553 34
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+.......... ......+..+++..+........|+++||++|.|+++
T Consensus 104 ~~p~ivv~nK~Dl~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 104 NVPIILVGTKIDLRDDENTLKKL--------------------EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKE 163 (171)
T ss_pred CCCEEEEEccHHhhhchhhhhhc--------------------ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHH
Confidence 89999999999998662211000 1112456677778777755444899999999999999
Q ss_pred HHHHHHH
Q psy1524 302 VFKELLV 308 (592)
Q Consensus 302 Lf~~Li~ 308 (592)
+|+.+++
T Consensus 164 l~~~i~~ 170 (171)
T cd00157 164 VFEEAIR 170 (171)
T ss_pred HHHHHhh
Confidence 9999875
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=6.1e-24 Score=202.21 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=125.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+++|++|||||||+++|+++.+.. +.+|++..+. .+..+ .+.+++|||+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~----------------------- 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGK----------------------- 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCC-----------------------
Confidence 68999999999999999999887764 6777763322 33333 477888999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+++..++..+++++|++|+|||++++.+|+++..|+..+.+.....+.
T Consensus 54 --------------------------------~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~ 101 (169)
T cd04158 54 --------------------------------HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDA 101 (169)
T ss_pred --------------------------------hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCC
Confidence 677788888999999999999999999999999999888765334568
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-----CCeEEEcccCCCcc
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-----ENGFVEASAKDNTN 298 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-----~~~~~EvSAktg~g 298 (592)
|++||+||+|+... ++.+++..+++... ...+++|||++|.|
T Consensus 102 piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 102 LLLIFANKQDVAGA---------------------------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CEEEEEeCcCcccC---------------------------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 99999999998532 44555655543221 22588999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+++++.+...
T Consensus 149 v~~~f~~l~~~~~~~ 163 (169)
T cd04158 149 LYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887544
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.3e-23 Score=203.30 Aligned_cols=161 Identities=13% Similarity=0.178 Sum_probs=123.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+++|++|||||||+++|..+.+. .+.+|++... ..+.. ..+.++||||+|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~-~~~~~--~~~~~~i~D~~Gq------------------- 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQ------------------- 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE-EEEEE--CCEEEEEEECCCC-------------------
Confidence 34589999999999999999999988876 4677877332 23333 3477888999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++++.++..+++++|++|+|||++++++++++..++..+.....
T Consensus 72 ------------------------------------~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 72 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
T ss_pred ------------------------------------HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence 88999999999999999999999999999998887776654323
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~EvSAkt 295 (592)
..++|++||+||+|+.+. +..++........ ....+++|||++
T Consensus 116 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNA---------------------------------MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred hCCCCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 357899999999998653 1222322222111 112366899999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|+||+++|++|++.+..
T Consensus 163 g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 163 GEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.7e-23 Score=198.25 Aligned_cols=162 Identities=29% Similarity=0.347 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|..+.|...+..+. +.++....+++..+.+++|||+|.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 57 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSR---------------------- 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCc----------------------
Confidence 489999999999999999999999976654443 334455567778899999999998
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST 221 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~ 221 (592)
+.+......++..+|++++|||++++.+|+.+. .|+..+... ..
T Consensus 58 ---------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~ 102 (166)
T cd01893 58 ---------------------------------PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL--GV 102 (166)
T ss_pred ---------------------------------hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 555555666789999999999999999999986 466666654 34
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-CeEEEcccCCCccHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-NGFVEASAKDNTNIT 300 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-~~~~EvSAktg~gVe 300 (592)
++|+++|+||+|+.+... .....++...++..... ..+++|||++|.||+
T Consensus 103 ~~pviiv~nK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 103 KVPIILVGNKSDLRDGSS-----------------------------QAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred CCCEEEEEEchhcccccc-----------------------------hhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 899999999999976510 00012222233222222 379999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+.+.+.
T Consensus 154 ~lf~~~~~~~~ 164 (166)
T cd01893 154 EVFYYAQKAVL 164 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999988774
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=1.2e-23 Score=198.65 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+++|++|||||||+++|..+.+. .+.+|++... ..+.. ..+.+.||||+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~-~~~~~--~~~~~~l~D~~G~---------------------- 54 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQ---------------------- 54 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEE--CCEEEEEEECCCC----------------------
Confidence 48999999999999999999988887 4678876332 23333 3577888999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
+++..++..++++||++|+|||++++.+|+++..++..+.......+
T Consensus 55 ---------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 101 (159)
T cd04150 55 ---------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRD 101 (159)
T ss_pred ---------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcC
Confidence 78888999999999999999999999999999988877754333356
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh---hcCCCeEEEcccCCCcc
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ---VDWENGFVEASAKDNTN 298 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~---~~~~~~~~EvSAktg~g 298 (592)
+|++||+||+|+.+. +..++ ...+.. ......+++|||++|.|
T Consensus 102 ~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 102 AVLLVFANKQDLPNA---------------------------------MSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 899999999998643 11111 122211 01233578999999999
Q ss_pred HHHHHHHHHH
Q psy1524 299 ITQVFKELLV 308 (592)
Q Consensus 299 VeeLf~~Li~ 308 (592)
|+++|++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.91 E-value=3.4e-23 Score=190.44 Aligned_cols=157 Identities=33% Similarity=0.558 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+++|.+|||||||+++|.++.+...+.+|++ +.....+.+++..+.+.+||++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--------------------- 59 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh---------------------
Confidence 5899999999999999999999999887777777 566677778888889999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.+..+...+++++|++|+|||++++++++.+..|+..+... ...
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~ 104 (159)
T cd00154 60 ----------------------------------ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEY-APE 104 (159)
T ss_pred ----------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence 777788888999999999999999999999999999888776 335
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
..|+++|+||+|+..+ ..+..++...++. ....+++++||+++.|+++
T Consensus 105 ~~p~ivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 105 NIPIILVGNKIDLEDQ-------------------------------RQVSTEEAQQFAK-ENGLLFFETSAKTGENVEE 152 (159)
T ss_pred CCcEEEEEEccccccc-------------------------------ccccHHHHHHHHH-HcCCeEEEEecCCCCCHHH
Confidence 7999999999999733 3456677777776 4678899999999999999
Q ss_pred HHHHHH
Q psy1524 302 VFKELL 307 (592)
Q Consensus 302 Lf~~Li 307 (592)
+|..|+
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999886
No 111
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=2.4e-23 Score=199.72 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=121.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+++|++|||||||+++|..+.+. .+.+|++..+. .+..+ .+.++||||+|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~-------------------- 67 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQ-------------------- 67 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCC--------------------
Confidence 4589999999999999999999988775 46778773222 23333 477888999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..++..++++||++|+|||++++.+++++..++..+......
T Consensus 68 -----------------------------------~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~ 112 (175)
T smart00177 68 -----------------------------------DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL 112 (175)
T ss_pred -----------------------------------hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh
Confidence 788889999999999999999999999999999888877653333
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN 296 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg 296 (592)
.++|++||+||+|+.+. .+.++....... .....++++||++|
T Consensus 113 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 113 RDAVILVFANKQDLPDA---------------------------------MKAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred cCCcEEEEEeCcCcccC---------------------------------CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 57899999999998653 111221111110 12334778999999
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.||+++|++|.+.+
T Consensus 160 ~gv~e~~~~l~~~~ 173 (175)
T smart00177 160 DGLYEGLTWLSNNL 173 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=3.3e-23 Score=197.58 Aligned_cols=157 Identities=17% Similarity=0.297 Sum_probs=123.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+..+||+++|++|||||||+++|++..+ ..+.+|++ +....+.+++ +.+.+|||+|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~------------------- 68 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQ------------------- 68 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 4568999999999999999999997754 45566765 2334455554 67788999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.+..++..+++++|++++|||++++.+|..+..|+..+.....
T Consensus 69 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 112 (173)
T cd04154 69 ------------------------------------KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER 112 (173)
T ss_pred ------------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence 77788888899999999999999999999999888887765433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+... ...+++..+... ....++++|||++
T Consensus 113 ~~~~p~iiv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 113 LAGATLLILANKQDLPGA---------------------------------LSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred hcCCCEEEEEECcccccC---------------------------------CCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 468999999999998653 123334433321 2356799999999
Q ss_pred CccHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLV 308 (592)
Q Consensus 296 g~gVeeLf~~Li~ 308 (592)
|.||+++|++++.
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 113
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=3.2e-23 Score=200.50 Aligned_cols=161 Identities=14% Similarity=0.203 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||++++..+.+.. +.+|++..+ ..+.. ..+.+++|||+|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-~~~~~--~~~~~~l~D~~G~-------------------- 71 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-ETVEY--KNLKFTMWDVGGQ-------------------- 71 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-EEEEE--CCEEEEEEECCCC--------------------
Confidence 35899999999999999999999888864 667776333 23333 4477888999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..++..+++++|++|+|||++++.+|+++..++..+......
T Consensus 72 -----------------------------------~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~ 116 (182)
T PTZ00133 72 -----------------------------------DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDEL 116 (182)
T ss_pred -----------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhh
Confidence 788889999999999999999999999999988877766543233
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN 296 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg 296 (592)
.++|+|||+||+|+.+. +..++....... .....++++||++|
T Consensus 117 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 117 RDAVLLVFANKQDLPNA---------------------------------MSTTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred cCCCEEEEEeCCCCCCC---------------------------------CCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 57899999999998643 111221111111 11234679999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||+++|++|++.+..+
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887544
No 114
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=1.5e-23 Score=199.05 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=121.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC 144 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~ 144 (592)
|+|+|++|||||||+++|+++.+...+.+|++... ..++...+.+.+|||+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~------------------------ 54 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGS------------------------ 54 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCC------------------------
Confidence 89999999999999999999988888888887322 334556688999999999
Q ss_pred HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524 145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP 224 (592)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P 224 (592)
++|..++..+++++|++|+|||++++.+|..+..|+..+... ..++|
T Consensus 55 -------------------------------~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~p 101 (164)
T cd04162 55 -------------------------------QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH--PPDLP 101 (164)
T ss_pred -------------------------------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCc
Confidence 788889999999999999999999999999999888887653 26899
Q ss_pred EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh----HHHHHHHhhcCCCeEEEcccCC-----
Q psy1524 225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY----DTTESVVQVDWENGFVEASAKD----- 295 (592)
Q Consensus 225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~----ee~~~la~~~~~~~~~EvSAkt----- 295 (592)
+++|+||+|+... +.++. ..+..+++ .....+++|||++
T Consensus 102 iilv~NK~Dl~~~-------------------------------~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~~~~s~~ 149 (164)
T cd04162 102 LVVLANKQDLPAA-------------------------------RSVQEIHKELELEPIAR-GRRWILQGTSLDDDGSPS 149 (164)
T ss_pred EEEEEeCcCCcCC-------------------------------CCHHHHHHHhCChhhcC-CCceEEEEeeecCCCChh
Confidence 9999999998654 11110 12233433 3456688888888
Q ss_pred -CccHHHHHHHHHH
Q psy1524 296 -NTNITQVFKELLV 308 (592)
Q Consensus 296 -g~gVeeLf~~Li~ 308 (592)
++||+++|+.++.
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 9999999998864
No 115
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=3.6e-22 Score=197.68 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=137.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
.....+||+|+|++|||||||+++++.+.+...+.+|++ +.....+..++..+.+++|||+|+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~---------------- 68 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ---------------- 68 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc----------------
Confidence 446679999999999999999999999999888999988 555666667888999999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++|..++..++..++++|+|||+++..||..+..|+..+..
T Consensus 69 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 109 (215)
T PTZ00132 69 ---------------------------------------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR 109 (215)
T ss_pred ---------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 77778888889999999999999999999999999998876
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++|+++|+||+|+.+. .+..+. ..+++ ..+..++++||++|
T Consensus 110 ~--~~~~~i~lv~nK~Dl~~~--------------------------------~~~~~~-~~~~~-~~~~~~~e~Sa~~~ 153 (215)
T PTZ00132 110 V--CENIPIVLVGNKVDVKDR--------------------------------QVKARQ-ITFHR-KKNLQYYDISAKSN 153 (215)
T ss_pred h--CCCCCEEEEEECccCccc--------------------------------cCCHHH-HHHHH-HcCCEEEEEeCCCC
Confidence 5 357999999999998643 222222 23444 34568999999999
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
.||+++|.++++.+..
T Consensus 154 ~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 154 YNFEKPFLWLARRLTN 169 (215)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998853
No 116
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=2.3e-22 Score=198.49 Aligned_cols=120 Identities=21% Similarity=0.351 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-----CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-----GVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-----g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
+||+++|+++||||||+++|+.+.|.+.+.+|++ ++..+.+.++ +..+.++||||+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~---------------- 64 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS---------------- 64 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc----------------
Confidence 5899999999999999999999999998999998 5555666653 57899999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++|..++..+++++|++|+|||++++.||+++..|+.++..
T Consensus 65 ---------------------------------------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~ 105 (202)
T cd04102 65 ---------------------------------------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALN 105 (202)
T ss_pred ---------------------------------------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999976
Q ss_pred hh------------------cCCCCCEEEEEeCCCCccc
Q psy1524 217 TK------------------ASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 217 ~~------------------~~~~~PIILVgNK~DL~~~ 237 (592)
.. ...++|+||||||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 106 KDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 42 1347899999999999765
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=8e-23 Score=190.98 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+|+++|++|||||||+++|++.. +...+.+|++-.. ..+. ...+.+++|||+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~--~~~~~~~l~Dt~G~---------------------- 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFE--KGNLSFTAFDMSGQ---------------------- 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEE--ECCEEEEEEECCCC----------------------
Confidence 58999999999999999999875 4566777876221 2222 33577888999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--cC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--AS 220 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~~ 220 (592)
+++..++..+++.+|++|+|||++++.+|..+..|+..+.... ..
T Consensus 56 ---------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (162)
T cd04157 56 ---------------------------------GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKH 102 (162)
T ss_pred ---------------------------------HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCccccc
Confidence 7888899999999999999999999999998888888776532 12
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCC
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDN 296 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg 296 (592)
.++|+++|+||+|+.... ..++...... ......+++|||++|
T Consensus 103 ~~~p~iiv~NK~Dl~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g 149 (162)
T cd04157 103 RRVPILFFANKMDLPDAL---------------------------------TAVKITQLLGLENIKDKPWHIFASNALTG 149 (162)
T ss_pred CCCCEEEEEeCccccCCC---------------------------------CHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence 579999999999986531 1111111111 012345899999999
Q ss_pred ccHHHHHHHHHH
Q psy1524 297 TNITQVFKELLV 308 (592)
Q Consensus 297 ~gVeeLf~~Li~ 308 (592)
.||+++|++|.+
T Consensus 150 ~gv~~~~~~l~~ 161 (162)
T cd04157 150 EGLDEGVQWLQA 161 (162)
T ss_pred CchHHHHHHHhc
Confidence 999999999865
No 118
>KOG4252|consensus
Probab=99.89 E-value=3.4e-24 Score=201.36 Aligned_cols=173 Identities=26% Similarity=0.390 Sum_probs=158.1
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
+...+..+|++|+|..+|||||+|.|||.+-|..+|..|++ |+..+.+.+++..+.+.+|||+|+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq-------------- 79 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ-------------- 79 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc--------------
Confidence 44557789999999999999999999999999999999999 888888999988888999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
++|..+...||++|.+.++||+.+|+.||+.+..|+..+
T Consensus 80 -----------------------------------------eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv 118 (246)
T KOG4252|consen 80 -----------------------------------------EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKV 118 (246)
T ss_pred -----------------------------------------hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
.. ....+|.|+|-||+||.++ .++..++++.+++ .....++.+|++
T Consensus 119 ~~--e~~~IPtV~vqNKIDlved-------------------------------s~~~~~evE~lak-~l~~RlyRtSvk 164 (246)
T KOG4252|consen 119 QK--ETERIPTVFVQNKIDLVED-------------------------------SQMDKGEVEGLAK-KLHKRLYRTSVK 164 (246)
T ss_pred HH--HhccCCeEEeeccchhhHh-------------------------------hhcchHHHHHHHH-Hhhhhhhhhhhh
Confidence 77 4679999999999999988 5778888998888 667789999999
Q ss_pred CCccHHHHHHHHHHHHHHhcccC
Q psy1524 295 DNTNITQVFKELLVQAKVKYNLS 317 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~~~~ 317 (592)
...||.++|..+++.+.++...+
T Consensus 165 ed~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 165 EDFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987765543
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=6.3e-22 Score=185.06 Aligned_cols=154 Identities=19% Similarity=0.316 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+|+|+|++|||||||+++|+.+.+.. +.+|++.. ...+.+ +..+.+.+|||+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~-~~~~~~-~~~~~l~i~D~~G~----------------------- 54 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFN-VEMLQL-EKHLSLTVWDVGGQ----------------------- 54 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcc-eEEEEe-CCceEEEEEECCCC-----------------------
Confidence 58999999999999999999988864 35666522 223333 34578899999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+.+..++..++.++|++|+|||++++.++..+..|+..+.......+.
T Consensus 55 --------------------------------~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (160)
T cd04156 55 --------------------------------EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV 102 (160)
T ss_pred --------------------------------HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence 677778888899999999999999999999998888877654333579
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----hcCCCeEEEcccCCCcc
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----VDWENGFVEASAKDNTN 298 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----~~~~~~~~EvSAktg~g 298 (592)
|+++|+||+|+... ...++...... ......+++|||++|.|
T Consensus 103 piilv~nK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 103 PVVLLANKQDLPGA---------------------------------LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred CEEEEEECcccccC---------------------------------cCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 99999999998643 01111111110 01234689999999999
Q ss_pred HHHHHHHHHH
Q psy1524 299 ITQVFKELLV 308 (592)
Q Consensus 299 VeeLf~~Li~ 308 (592)
|+++|+.|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999998864
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=3.2e-22 Score=190.40 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=120.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+|+++|++|||||||+++|++. +...+.+|++.. ...+..+ .+.+++|||+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~----------------------- 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGG----------------------- 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCc-----------------------
Confidence 4899999999999999999976 777788888743 3344444 477788999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
++++.++..+++++|++|+|||+++..+|+.+..|+..+.......++
T Consensus 54 --------------------------------~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~ 101 (167)
T cd04161 54 --------------------------------ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGK 101 (167)
T ss_pred --------------------------------HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCC
Confidence 778889999999999999999999999999999998888764334578
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-cCCCeEEEcccCCC------
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-DWENGFVEASAKDN------ 296 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg------ 296 (592)
|++||+||+|+....... ..+.......+++. .....+++|||++|
T Consensus 102 piliv~NK~Dl~~~~~~~---------------------------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~ 154 (167)
T cd04161 102 PILVLANKQDKKNALLGA---------------------------DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154 (167)
T ss_pred cEEEEEeCCCCcCCCCHH---------------------------HHHHhcCcccccCCCCceEEEEEeEceeCCCCccc
Confidence 999999999997641000 00000111122221 12346788999998
Q ss_pred ccHHHHHHHHHH
Q psy1524 297 TNITQVFKELLV 308 (592)
Q Consensus 297 ~gVeeLf~~Li~ 308 (592)
.||++.|++|+.
T Consensus 155 ~g~~~~~~wl~~ 166 (167)
T cd04161 155 PSIVEGLRWLLA 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 899999999964
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=1.4e-21 Score=187.13 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+++|++|||||||+++|+.+.+.. +.+|++..+ ..+.+++ +.+.+|||+|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~--------------------- 69 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQ--------------------- 69 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCC---------------------
Confidence 4799999999999999999999888875 466766433 2344454 67778999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.+..++..+++++|++|+|||++++.+|..+..++..+.......
T Consensus 70 ----------------------------------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~ 115 (174)
T cd04153 70 ----------------------------------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLR 115 (174)
T ss_pred ----------------------------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhc
Confidence 7788888889999999999999999999988888777775543345
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh---hcCCCeEEEcccCCCc
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ---VDWENGFVEASAKDNT 297 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~---~~~~~~~~EvSAktg~ 297 (592)
++|+++|+||+|+... ++.++ ...+.. ......+++|||++|.
T Consensus 116 ~~p~viv~NK~Dl~~~---------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 116 KAVLLVLANKQDLKGA---------------------------------MTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 7999999999998643 11222 122210 1234568999999999
Q ss_pred cHHHHHHHHHH
Q psy1524 298 NITQVFKELLV 308 (592)
Q Consensus 298 gVeeLf~~Li~ 308 (592)
||+++|++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=1.6e-21 Score=188.33 Aligned_cols=158 Identities=17% Similarity=0.316 Sum_probs=122.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+.+||+|+|++|||||||+++|+++.+. .+.+|... ....+.+++ +.+.+|||+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~--~~~~l~D~~G~------------------- 73 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGN--IKFKTFDLGGH------------------- 73 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECC--EEEEEEECCCC-------------------
Confidence 34689999999999999999999988774 46666653 234556665 56677999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.+..++..++..+|++++|+|+++..+|.....++..+.....
T Consensus 74 ------------------------------------~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~ 117 (190)
T cd00879 74 ------------------------------------EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE 117 (190)
T ss_pred ------------------------------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc
Confidence 66777888889999999999999999999988888888776544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---------------cC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---------------DW 284 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---------------~~ 284 (592)
..+.|+++|+||+|+... ++.++...+... ..
T Consensus 118 ~~~~pvivv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 118 LANVPFLILGNKIDLPGA---------------------------------VSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCCEEEEEeCCCCCCC---------------------------------cCHHHHHHHhCcccccccccccccccCce
Confidence 467999999999998632 223333333321 12
Q ss_pred CCeEEEcccCCCccHHHHHHHHHHH
Q psy1524 285 ENGFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 285 ~~~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
...+++|||++|+||+++|+++++.
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhh
Confidence 3468999999999999999999865
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=9.7e-22 Score=184.30 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+++|..+.+.. +.+|++... ..+.. ..+.++||||+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~----------------------- 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV-ETVTY--KNLKFQVWDLGGQ----------------------- 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe-EEEEE--CCEEEEEEECCCC-----------------------
Confidence 68999999999999999998877763 456665222 22333 3477888999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+.|..++..++..+|++|+|||++++.++.....++..+.+.....++
T Consensus 54 --------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (158)
T cd04151 54 --------------------------------TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA 101 (158)
T ss_pred --------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 778888899999999999999999998888777666655443233578
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-HHHHh---hcCCCeEEEcccCCCccH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-ESVVQ---VDWENGFVEASAKDNTNI 299 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-~~la~---~~~~~~~~EvSAktg~gV 299 (592)
|+++|+||+|+.... ...+. ..+.. .....++++|||++|.||
T Consensus 102 piiiv~nK~Dl~~~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 102 VLLVFANKQDMPGAL---------------------------------SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred cEEEEEeCCCCCCCC---------------------------------CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999999999986431 11111 11111 011246999999999999
Q ss_pred HHHHHHHHH
Q psy1524 300 TQVFKELLV 308 (592)
Q Consensus 300 eeLf~~Li~ 308 (592)
+++|++|++
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999875
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=1.7e-21 Score=183.49 Aligned_cols=154 Identities=19% Similarity=0.296 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTF------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+|+|+|++|||||||+++|+.... ...+.+|+.... ..+.+++ +.+.+|||+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~----------------- 60 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQ----------------- 60 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCC-----------------
Confidence 589999999999999999985422 234455554222 3445554 56777999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..++..++..+|++++|||+++..++..+..++..+.+.
T Consensus 61 --------------------------------------~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~ 102 (167)
T cd04160 61 --------------------------------------ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN 102 (167)
T ss_pred --------------------------------------hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC
Confidence 677888888999999999999999999999998888887765
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cCCCeEEEc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DWENGFVEA 291 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~~~~~~Ev 291 (592)
....++|+++|+||+|+... +..++...+... ....+++++
T Consensus 103 ~~~~~~p~ilv~NK~D~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 103 EALEGVPLLILANKQDLPDA---------------------------------LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred hhhcCCCEEEEEEccccccC---------------------------------CCHHHHHHHhccccccccCCceEEEEe
Confidence 44568999999999998643 122333332221 124579999
Q ss_pred ccCCCccHHHHHHHHHH
Q psy1524 292 SAKDNTNITQVFKELLV 308 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~ 308 (592)
||++|+||+++|++|++
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999865
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.87 E-value=2.8e-21 Score=180.56 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=118.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+++|.+|||||||++++++..+ ..+.+|++.. ...+.++ .+.+.+|||+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~----------------------- 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN-VETVEYK--NVSFTVWDVGGQ----------------------- 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc-eEEEEEC--CEEEEEEECCCC-----------------------
Confidence 699999999999999999998874 3455565522 2234444 467888999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+.+..++..++..+|++++|||++++.++..+..++..+.......+.
T Consensus 54 --------------------------------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (158)
T cd00878 54 --------------------------------DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGV 101 (158)
T ss_pred --------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence 677778888999999999999999999999998888877665445689
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNI 299 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gV 299 (592)
|+++|+||+|+.... ..++...... .....+++++||++|.|+
T Consensus 102 piiiv~nK~D~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 102 PLLIFANKQDLPGAL---------------------------------SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred cEEEEeeccCCcccc---------------------------------CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 999999999987541 1122222221 124567999999999999
Q ss_pred HHHHHHHHH
Q psy1524 300 TQVFKELLV 308 (592)
Q Consensus 300 eeLf~~Li~ 308 (592)
+++|++|+.
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.86 E-value=1.1e-20 Score=196.89 Aligned_cols=126 Identities=22% Similarity=0.355 Sum_probs=109.7
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-------------CeEEEEEEEeCCCCCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-------------GVHLKLDILDTSGEQS 122 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-------------g~~v~L~I~DT~G~~~ 122 (592)
.+....+||+|+|+.|||||||+++|+.+.|...+.+|++ ++..+.+.++ +..+.++||||+|+
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq-- 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH-- 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC--
Confidence 3456779999999999999999999999999988999998 5556666664 35788999999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
++|..++..|++++|++|+|||++++.
T Consensus 94 -----------------------------------------------------ErfrsL~~~yyr~AdgiILVyDITdr~ 120 (334)
T PLN00023 94 -----------------------------------------------------ERYKDCRSLFYSQINGVIFVHDLSQRR 120 (334)
T ss_pred -----------------------------------------------------hhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence 899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-----------CCCCCEEEEEeCCCCccc
Q psy1524 203 SFEEIRLIRDHIFETKA-----------STAVPIVVVGNKSDLADE 237 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~-----------~~~~PIILVgNK~DL~~~ 237 (592)
||+++..|+..+..... ..++|+||||||+||...
T Consensus 121 SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999987531 135899999999999654
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=8e-21 Score=183.83 Aligned_cols=157 Identities=16% Similarity=0.231 Sum_probs=118.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..++|+++|.+|||||||+++|.++.+.. +.+|... ....+.+++ +.+.+|||+|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~-------------------- 71 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP-TSEELAIGN--IKFTTFDLGGH-------------------- 71 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc-ceEEEEECC--EEEEEEECCCC--------------------
Confidence 34899999999999999999999887653 3455442 223344554 66777999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+.+..++..++.++|++|+|+|++++.++.....++..+.+....
T Consensus 72 -----------------------------------~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~ 116 (184)
T smart00178 72 -----------------------------------QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEEL 116 (184)
T ss_pred -----------------------------------HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhh
Confidence 777888889999999999999999999999988888777654334
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----------hcCCCeEE
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----------VDWENGFV 289 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----------~~~~~~~~ 289 (592)
.++|+++|+||+|+... ++.++...... ......++
T Consensus 117 ~~~piliv~NK~Dl~~~---------------------------------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 117 ATVPFLILGNKIDAPYA---------------------------------ASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred cCCCEEEEEeCccccCC---------------------------------CCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 57899999999998632 22222222111 01244599
Q ss_pred EcccCCCccHHHHHHHHHHH
Q psy1524 290 EASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~ 309 (592)
+|||++|.|+++++++|+..
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999765
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=2.3e-20 Score=171.87 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=118.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC 144 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~ 144 (592)
|+|+|++|||||||+++|++..+...+.+|++.... .+..++ +.+.+|||+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~------------------------ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQ------------------------ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCC------------------------
Confidence 899999999999999999999999888888873332 233444 77888999999
Q ss_pred HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524 145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP 224 (592)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P 224 (592)
+.+..++..++..+|++++|+|+++..++..+..++..+.......++|
T Consensus 55 -------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 103 (159)
T cd04159 55 -------------------------------PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP 103 (159)
T ss_pred -------------------------------HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC
Confidence 7788888889999999999999999999988887777766543345789
Q ss_pred EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccHH
Q psy1524 225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gVe 300 (592)
+++|+||+|+.... . .++...... .....+++++||++|.||+
T Consensus 104 ~iiv~nK~D~~~~~-------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 104 LLVLGNKNDLPGAL-------------------------------S--VDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred EEEEEeCccccCCc-------------------------------C--HHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 99999999986541 0 111111110 1223578999999999999
Q ss_pred HHHHHHHH
Q psy1524 301 QVFKELLV 308 (592)
Q Consensus 301 eLf~~Li~ 308 (592)
++|+++.+
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99999865
No 129
>PTZ00099 rab6; Provisional
Probab=99.85 E-value=1.7e-20 Score=181.18 Aligned_cols=140 Identities=29% Similarity=0.475 Sum_probs=122.8
Q ss_pred CCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCc
Q psy1524 85 NTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLP 163 (592)
Q Consensus 85 ~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
+.|.+.|.+|++ +++.+.+.+++..+.+.||||+|+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~------------------------------------------- 39 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ------------------------------------------- 39 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------------------------------
Confidence 467888999998 777788899999999999999999
Q ss_pred chhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccccccccc
Q psy1524 164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243 (592)
Q Consensus 164 ~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~ 243 (592)
++|..++..++++||++|+|||++++.||+.+..|+..+.... ...+|+||||||+||...
T Consensus 40 ------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~------ 100 (176)
T PTZ00099 40 ------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDL------ 100 (176)
T ss_pred ------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccc------
Confidence 8888899999999999999999999999999999999887653 457899999999999754
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
+.++.+++..++. .....|+||||++|.||+++|++|++.+..
T Consensus 101 -------------------------~~v~~~e~~~~~~-~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 -------------------------RKVTYEEGMQKAQ-EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred -------------------------cCCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5677788888776 456679999999999999999999998844
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=6.4e-20 Score=174.85 Aligned_cols=154 Identities=17% Similarity=0.262 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-------CCCCccCce------e-eeEEEE--Eee---CCeEEEEEEEeCCCCCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKRTI------E-EMHHED--FSM---NGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~Tt------~-d~~~~~--v~v---dg~~v~L~I~DT~G~~~~~ 124 (592)
+|+++|.+|||||||+++|++.. +...+.++. + ...... +.+ ++..+.++||||||+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---- 77 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH---- 77 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC----
Confidence 69999999999999999999632 222333322 1 112222 222 667888999999999
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
++|..+...++..+|++|+|||+++..++
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~~~ 106 (179)
T cd01890 78 ---------------------------------------------------VDFSYEVSRSLAACEGALLLVDATQGVEA 106 (179)
T ss_pred ---------------------------------------------------hhhHHHHHHHHHhcCeEEEEEECCCCccH
Confidence 67778888899999999999999998887
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC
Q psy1524 205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW 284 (592)
Q Consensus 205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~ 284 (592)
..+..|.... ..++|+|+|+||+|+... + ..+....+++...
T Consensus 107 ~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~-------------------------------~--~~~~~~~~~~~~~ 148 (179)
T cd01890 107 QTLANFYLAL-----ENNLEIIPVINKIDLPSA-------------------------------D--PERVKQQIEDVLG 148 (179)
T ss_pred hhHHHHHHHH-----HcCCCEEEEEECCCCCcC-------------------------------C--HHHHHHHHHHHhC
Confidence 7776664322 236899999999998643 0 0111223333211
Q ss_pred --CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 285 --ENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 285 --~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
...++++||++|.||+++|+.+.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 149 LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12489999999999999999998765
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.4e-19 Score=170.60 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+|+|+|++|||||||+|+|++..+. ..+..++.+.....+..+ .+.++||||||+.+....+ ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~------------~~- 66 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEE------------RN- 66 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccC------------Cc-
Confidence 7999999999999999999988764 233344443333333333 3677889999982110000 00
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH--HHHHHHHHHHHHhhcC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF--EEIRLIRDHIFETKAS 220 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf--e~l~~~l~~L~~~~~~ 220 (592)
. -.+..+.. ....+|++|+|+|+++..++ +....|+..+... .
T Consensus 67 -~-------------------------------~~~~~~~~-~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~ 111 (168)
T cd01897 67 -T-------------------------------IEMQAITA-LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--F 111 (168)
T ss_pred -h-------------------------------HHHHHHHH-HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--c
Confidence 0 00112211 12236899999999988654 6666777777653 2
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.+.|+|+|+||+|+... +.+.. ...+.+ ....++++|||++|.|++
T Consensus 112 ~~~pvilv~NK~Dl~~~-------------------------------~~~~~--~~~~~~-~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 112 KNKPVIVVLNKIDLLTF-------------------------------EDLSE--IEEEEE-LEGEEVLKISTLTEEGVD 157 (168)
T ss_pred CcCCeEEEEEccccCch-------------------------------hhHHH--HHHhhh-hccCceEEEEecccCCHH
Confidence 47899999999999754 11111 333333 345679999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+++.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=9.9e-20 Score=171.64 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=111.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+|+|+|.+|||||||+|+|.+.... ..+..++.+.....+.+++. ..+.||||||+.+....
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~---------------- 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASE---------------- 64 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccc----------------
Confidence 5899999999999999999976542 23333333333334444443 46677999998210000
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHHHHHHHHHHhhc-C
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIRLIRDHIFETKA-S 220 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~~~l~~L~~~~~-~ 220 (592)
...+.......+..+|++++|+|++++ .+++.+..|...+..... .
T Consensus 65 --------------------------------~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 65 --------------------------------GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL 112 (170)
T ss_pred --------------------------------cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence 001111111234569999999999999 899999999988876521 2
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
..+|+++|+||+|+.+. ..+ .+....+........++++||+++.|++
T Consensus 113 ~~~p~ivv~NK~Dl~~~-------------------------------~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 113 LEKPRIVVLNKIDLLDE-------------------------------EEL-FELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred cccccEEEEEchhcCCc-------------------------------hhh-HHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 46899999999998754 111 2233334332245679999999999999
Q ss_pred HHHHHHHHH
Q psy1524 301 QVFKELLVQ 309 (592)
Q Consensus 301 eLf~~Li~~ 309 (592)
++|+.+.+.
T Consensus 161 ~l~~~i~~~ 169 (170)
T cd01898 161 ELLRKLAEL 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=2.7e-19 Score=163.19 Aligned_cols=156 Identities=29% Similarity=0.429 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+++|.+|||||||++++....+...+.+++. +.....+..++..+.+.+|||+|+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------------------- 60 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ-------------------- 60 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--------------------
Confidence 37999999999999999999998887766666666 555555677887788899999998
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHH-HHHHHHHHhh
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~-~~l~~L~~~~ 218 (592)
+.+..+...+...++.++.++|+... .++.... .+...+....
T Consensus 61 -----------------------------------~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~ 105 (161)
T TIGR00231 61 -----------------------------------EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA 105 (161)
T ss_pred -----------------------------------ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc
Confidence 67778888889999999999999887 7777765 5666666553
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
. .+.|+++|+||+|+... + +.......+ ......+++++||++|.|
T Consensus 106 ~-~~~p~ivv~nK~D~~~~-------------------------------~-~~~~~~~~~-~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 106 E-SNVPIILVGNKIDLRDA-------------------------------K-LKTHVAFLF-AKLNGEPIIPLSAETGKN 151 (161)
T ss_pred c-cCCcEEEEEEcccCCcc-------------------------------h-hhHHHHHHH-hhccCCceEEeecCCCCC
Confidence 2 28899999999999754 1 222222333 334456799999999999
Q ss_pred HHHHHHHH
Q psy1524 299 ITQVFKEL 306 (592)
Q Consensus 299 VeeLf~~L 306 (592)
++++|+.+
T Consensus 152 v~~~~~~l 159 (161)
T TIGR00231 152 IDSAFKIV 159 (161)
T ss_pred HHHHHHHh
Confidence 99999876
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.2e-19 Score=172.00 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=115.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...++|+|+|++|||||||++++.+..+. .+.+|.+ .....+..++ ..+.+||++|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g-~~~~~i~~~~--~~~~~~D~~G~------------------- 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG-FNIKTVQSDG--FKLNVWDIGGQ------------------- 68 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 44789999999999999999999987664 3445554 2223445565 45677999998
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
..+..++..++..+|++++|+|+++..++.....++..+.....
T Consensus 69 ------------------------------------~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~ 112 (173)
T cd04155 69 ------------------------------------RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK 112 (173)
T ss_pred ------------------------------------HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh
Confidence 66677777888999999999999999889888877777665433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+.... ..++....... .....++++||++
T Consensus 113 ~~~~p~ivv~nK~D~~~~~---------------------------------~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 113 LAGVPVLVFANKQDLATAA---------------------------------PAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred hcCCCEEEEEECCCCccCC---------------------------------CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 4579999999999986531 11111111110 1122478999999
Q ss_pred CccHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLV 308 (592)
Q Consensus 296 g~gVeeLf~~Li~ 308 (592)
|+|++++|++|++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=3e-19 Score=176.09 Aligned_cols=178 Identities=27% Similarity=0.368 Sum_probs=133.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+|+|++|||||||+++|..+.+...+.+|+. .........++..+.+.+|||+|+
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-------------------- 64 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-------------------- 64 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH--------------------
Confidence 38999999999999999999999999999999987 444555555555888999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC-cCCHHHHHHHHHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD-PNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd-~~Sfe~l~~~l~~L~~~~~ 219 (592)
++|+.++..|+.+++++++|||+++ ..+++....|...+... .
T Consensus 65 -----------------------------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~-~ 108 (219)
T COG1100 65 -----------------------------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELREL-A 108 (219)
T ss_pred -----------------------------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHh-C
Confidence 8999999999999999999999999 55566667788887775 2
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccC--C
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAK--D 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAk--t 295 (592)
..+.|+|+|+||+|+........ .+.. ...+.+..+........ .....++++||+ +
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~~~~--------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 169 (219)
T COG1100 109 PDDVPILLVGNKIDLFDEQSSSE--------EILN-----------QLNREVVLLVLAPKAVLPEVANPALLETSAKSLT 169 (219)
T ss_pred CCCceEEEEecccccccchhHHH--------HHHh-----------hhhcCcchhhhHhHHhhhhhcccceeEeecccCC
Confidence 35789999999999987621100 0000 00012222222222211 223339999999 9
Q ss_pred CccHHHHHHHHHHHHHHhc
Q psy1524 296 NTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~ 314 (592)
+.+|+++|..+++.+....
T Consensus 170 ~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 170 GPNVNELFKELLRKLLEEI 188 (219)
T ss_pred CcCHHHHHHHHHHHHHHhh
Confidence 9999999999999986543
No 136
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=7.7e-20 Score=192.76 Aligned_cols=253 Identities=16% Similarity=0.170 Sum_probs=177.4
Q ss_pred cccCCCCCCCCCcchhHHhhhhccccC---------CCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCccC
Q psy1524 24 AENAGSQFLQPSLNFNRILNLVSASSE---------NESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYKR 93 (592)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~s~~~~---------~~~~~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~~ 93 (592)
.+.-|.+..+-..+.+.+...+..... ..............|+++|++|+|||||+|+|++. .+..+..+
T Consensus 145 iG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF 224 (411)
T COG2262 145 IGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF 224 (411)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccccc
Confidence 355566667777766655555444421 12223334456789999999999999999999965 45578888
Q ss_pred ceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhcccc
Q psy1524 94 TIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMT 172 (592)
Q Consensus 94 Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (592)
+|.|..++.+.+. +..+.+ .||.|+ |+.+|+.+..+|.
T Consensus 225 ATLdpttR~~~l~~g~~vlL--tDTVGF---------------------------------------I~~LP~~LV~AFk 263 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLL--TDTVGF---------------------------------------IRDLPHPLVEAFK 263 (411)
T ss_pred ccccCceeEEEeCCCceEEE--ecCccC---------------------------------------cccCChHHHHHHH
Confidence 9999999988886 566665 999999 7778888888888
Q ss_pred ccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCccccc
Q psy1524 173 CSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYL 252 (592)
Q Consensus 173 ~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l 252 (592)
++.|+ ...||++++|+|++++...+.+......|.+. ...++|+|+|.||+|+..+.
T Consensus 264 sTLEE--------~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~-------------- 320 (411)
T COG2262 264 STLEE--------VKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDE-------------- 320 (411)
T ss_pred HHHHH--------hhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCch--------------
Confidence 88887 78899999999999998888888888888887 55679999999999987651
Q ss_pred CCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHhcccChhhhhhcccCCCCCC
Q psy1524 253 SGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQ 332 (592)
Q Consensus 253 ~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~~~ 332 (592)
. ....+.. ... ..+.+||++|+|++.|.+.|.+.+..........-+..........
T Consensus 321 -----------------~----~~~~~~~-~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~~~~~l 377 (411)
T COG2262 321 -----------------E----ILAELER-GSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAGRLSWL 377 (411)
T ss_pred -----------------h----hhhhhhh-cCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCcccccHHHHH
Confidence 0 0111111 112 4789999999999999999999885443322111111111111111
Q ss_pred CCCCCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHH
Q psy1524 333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372 (592)
Q Consensus 333 ~s~~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e 372 (592)
+ ....+.+.+|.+. +.+.++.......-|++
T Consensus 378 ~--------~~~~v~~~~~~e~-~~i~~~~~~~~~~~~~~ 408 (411)
T COG2262 378 H--------DNGIVLEEEYGED-VRIKAEAPERLAKRLQE 408 (411)
T ss_pred H--------hcceeeecccCCc-eEEEEEECHHHHHhhhh
Confidence 1 1123445566666 88888888777666654
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=5.2e-19 Score=187.14 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..|+|||.+|||||||+|++++... +..|..||.+.....+.+ ++.. +.||||||..++....
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~------------- 223 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEG------------- 223 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCcc-------------
Confidence 5789999999999999999996542 356777887766666666 4434 5569999982110000
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA- 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~- 219 (592)
..+....-.++.+++++|+|+|+++.++++++..|..+|..+..
T Consensus 224 -----------------------------------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~ 268 (335)
T PRK12299 224 -----------------------------------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE 268 (335)
T ss_pred -----------------------------------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh
Confidence 01111222246789999999999998899999999999977532
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+.+. ..+..++...+.. .....+++|||++++||
T Consensus 269 L~~kp~IIV~NKiDL~~~-------------------------------~~~~~~~~~~~~~-~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 269 LADKPRILVLNKIDLLDE-------------------------------EEEREKRAALELA-ALGGPVFLISAVTGEGL 316 (335)
T ss_pred cccCCeEEEEECcccCCc-------------------------------hhHHHHHHHHHHH-hcCCCEEEEEcCCCCCH
Confidence 147899999999999754 1222223333332 33467999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+++|+.|.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 138
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=2.9e-19 Score=172.05 Aligned_cols=159 Identities=21% Similarity=0.351 Sum_probs=125.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|..|||||||++++..+.+.. ..||++- ....+.+++ +.+.+||.+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~-~~~~i~~~~--~~~~~~d~gG~------------------- 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF-NIEEIKYKG--YSLTIWDLGGQ------------------- 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE-EEEEEEETT--EEEEEEEESSS-------------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc-ccceeeeCc--EEEEEEecccc-------------------
Confidence 567999999999999999999999775543 5666652 234455666 55677999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
..++.++..|+.++|++|+|+|++|.+.+.+....+..+.....
T Consensus 69 ------------------------------------~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~ 112 (175)
T PF00025_consen 69 ------------------------------------ESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE 112 (175)
T ss_dssp ------------------------------------GGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG
T ss_pred ------------------------------------ccccccceeeccccceeEEEEecccceeecccccchhhhcchhh
Confidence 78888999999999999999999999999999888888777545
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh---h--cCCCeEEEcccC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ---V--DWENGFVEASAK 294 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~---~--~~~~~~~EvSAk 294 (592)
..++|+++++||+|+.+. .+.++...... . .....++.|||+
T Consensus 113 ~~~~piLIl~NK~D~~~~---------------------------------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 113 LKDIPILILANKQDLPDA---------------------------------MSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp GTTSEEEEEEESTTSTTS---------------------------------STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred cccceEEEEeccccccCc---------------------------------chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 568999999999998754 23333333221 1 234568999999
Q ss_pred CCccHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQA 310 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i 310 (592)
+|+||.|.|++|.+++
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999875
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=2.1e-19 Score=184.72 Aligned_cols=210 Identities=15% Similarity=0.145 Sum_probs=133.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+|+|+|.+|||||||+|+|++..+. ..+..||.+........++. .+.||||||+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~--qii~vDTPG~~~~~~---------------- 63 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGAS--QIIFIDTPGFHEKKH---------------- 63 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCc--EEEEEECcCCCCCcc----------------
Confidence 6999999999999999999988653 55667777655544444554 466799999821000
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
...+.+......++.++|++++|+|+++..+++ ..++..+.. .
T Consensus 64 -------------------------------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~ 106 (270)
T TIGR00436 64 -------------------------------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----L 106 (270)
T ss_pred -------------------------------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----c
Confidence 000111222344678999999999999887764 334444433 3
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
+.|+++|+||+|+.... ...+....+........++++||++|.|+++
T Consensus 107 ~~p~ilV~NK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 107 KRPVVLTRNKLDNKFKD--------------------------------KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CCCEEEEEECeeCCCHH--------------------------------HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 68999999999986431 0112333343322233799999999999999
Q ss_pred HHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeecC-CeEEeec
Q psy1524 302 VFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWEN-GFVEASA 360 (592)
Q Consensus 302 Lf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~~-~fvEiSA 360 (592)
+++.+.+.+.......+......... ..-......++||..+..+..++.+. +.+.+.|
T Consensus 155 L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~ 223 (270)
T TIGR00436 155 LAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHA 223 (270)
T ss_pred HHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEE
Confidence 99999988755433222111111000 00112567889999999888776543 3444433
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=1.3e-19 Score=166.76 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|+|++|||||||+|+|++..+. +.+|+. +.... .+|||+|...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~--------------------- 47 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYV--------------------- 47 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhh---------------------
Confidence 8999999999999999999987653 334432 11222 4699999710
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
. ..+.|..+.. .++++|++|+|||++++.++... .|...+ ..
T Consensus 48 --~---------------------------~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~~-~~~~~~-------~~ 89 (142)
T TIGR02528 48 --E---------------------------NRRLYSALIV-TAADADVIALVQSATDPESRFPP-GFASIF-------VK 89 (142)
T ss_pred --h---------------------------hHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCCh-hHHHhc-------cC
Confidence 0 0022444444 48999999999999999988652 333211 24
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|+|+||+|+.+. .+..+++..+++.....+++++||++|.|++++|
T Consensus 90 p~ilv~NK~Dl~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 90 PVIGLVTKIDLAEA--------------------------------DVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred CeEEEEEeeccCCc--------------------------------ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999998642 2344555666654434479999999999999999
Q ss_pred HHHH
Q psy1524 304 KELL 307 (592)
Q Consensus 304 ~~Li 307 (592)
+.+.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8874
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=5.1e-19 Score=165.09 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC---CCCCCccCc-eeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN---TFSPKYKRT-IEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~---~f~~~~~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.|+|+|++|||||||+++|++. .+...+.++ +.+.....+.+++ ...+++|||||+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~------------------- 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGH------------------- 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCCh-------------------
Confidence 6899999999999999999963 333333332 2233334445542 346778999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE 216 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~ 216 (592)
++|......++.++|++|+|+|+++. .+++.+ ..+..
T Consensus 62 ------------------------------------~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~ 101 (164)
T cd04171 62 ------------------------------------EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILEL 101 (164)
T ss_pred ------------------------------------HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHH
Confidence 66665556678899999999999873 333322 22222
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAK 294 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAk 294 (592)
. ...|+|+|+||+|+..... .....++.....+.. ...+++++||+
T Consensus 102 ~---~~~~~ilv~NK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 102 L---GIKRGLVVLTKADLVDEDW-----------------------------LELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred h---CCCcEEEEEECccccCHHH-----------------------------HHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 1 2349999999999975410 001112233333322 35679999999
Q ss_pred CCccHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLV 308 (592)
Q Consensus 295 tg~gVeeLf~~Li~ 308 (592)
+|.||+++|+.+.+
T Consensus 150 ~~~~v~~l~~~l~~ 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999988753
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=3.6e-19 Score=189.56 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...++|+|+|++|||||||+|+|++..+ ..++.++|.|...+.+.+ ++. .+.||||+|+.. ..+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~--~i~l~DT~G~~~-----------~l~~ 253 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG--EVLLTDTVGFIR-----------DLPH 253 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc--eEEEEecCcccc-----------cCCH
Confidence 3458999999999999999999998764 355667777888888888 454 556799999810 0000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
.. .+.|..... .+.+||++|+|+|++++.+++++..|...+...
T Consensus 254 ---------------------------~l--------ie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l 297 (351)
T TIGR03156 254 ---------------------------EL--------VAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL 297 (351)
T ss_pred ---------------------------HH--------HHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh
Confidence 00 023443332 478999999999999999988887777766654
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|+|+||+|+... ..+ ..... ...++++|||++|.
T Consensus 298 -~~~~~piIlV~NK~Dl~~~-------------------------------~~v-----~~~~~--~~~~~i~iSAktg~ 338 (351)
T TIGR03156 298 -GAEDIPQLLVYNKIDLLDE-------------------------------PRI-----ERLEE--GYPEAVFVSAKTGE 338 (351)
T ss_pred -ccCCCCEEEEEEeecCCCh-------------------------------HhH-----HHHHh--CCCCEEEEEccCCC
Confidence 3457899999999998643 111 11111 12358999999999
Q ss_pred cHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQ 309 (592)
Q Consensus 298 gVeeLf~~Li~~ 309 (592)
||+++++.|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999988764
No 143
>PRK15494 era GTPase Era; Provisional
Probab=99.80 E-value=8.6e-19 Score=186.01 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=133.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+.++|+|+|.+|||||||+|+|++..+. .....||.+.....+..++.+ +.||||||+.+...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~------------ 115 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKG------------ 115 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcc------------
Confidence 56789999999999999999999988764 334455566666667777765 46799999821000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~ 216 (592)
.+. ..+......++.+||++|+|+|.++ +|..+.. |+..+..
T Consensus 116 -~l~----------------------------------~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~ 158 (339)
T PRK15494 116 -SLE----------------------------------KAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS 158 (339)
T ss_pred -cHH----------------------------------HHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh
Confidence 000 1111222234789999999999765 4555543 4444433
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKD 295 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAkt 295 (592)
.+.|.|+|+||+|+... ...++..++.... ...++++||++
T Consensus 159 ----~~~p~IlViNKiDl~~~----------------------------------~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 159 ----LNIVPIFLLNKIDIESK----------------------------------YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred ----cCCCEEEEEEhhcCccc----------------------------------cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 24677899999998532 1233444433222 35799999999
Q ss_pred CccHHHHHHHHHHHHHHhcccChhhhhhcccCC---------CCCCCCCCCCCCCCcceeeEEeec
Q psy1524 296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQSL---------PPVQHSPNPVPYDTTESVVQVDWE 352 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~---------~~~~~s~~pVpydta~slas~d~~ 352 (592)
|.||+++|+.+...+.......+.......... .-...-..++||..++.+.+++..
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~ 266 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDL 266 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEc
Confidence 999999999999988766554443222111100 001245778999999988777653
No 144
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=2.3e-18 Score=168.68 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=112.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...++|+|+|++|||||||+|++++..+. .....++.+.....+.+++. ..+.||||+|+.+.. .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~-----------~-- 104 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDL-----------P-- 104 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCC-----------C--
Confidence 45689999999999999999999987643 23233333444444555543 256679999981100 0
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
. ...+.+.... ..+..+|++++|+|++++.++..+..|...+...
T Consensus 105 -------------------------~--------~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~- 149 (204)
T cd01878 105 -------------------------H--------QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL- 149 (204)
T ss_pred -------------------------H--------HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-
Confidence 0 0001222222 2367899999999999999998887777766554
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+.... .+ ..... ....+++++||++|.|
T Consensus 150 ~~~~~~viiV~NK~Dl~~~~-------------------------------~~-----~~~~~-~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 150 GAEDIPMILVLNKIDLLDDE-------------------------------EL-----EERLE-AGRPDAVFISAKTGEG 192 (204)
T ss_pred CcCCCCEEEEEEccccCChH-------------------------------HH-----HHHhh-cCCCceEEEEcCCCCC
Confidence 33568999999999997541 00 01222 3456799999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQ 309 (592)
Q Consensus 299 VeeLf~~Li~~ 309 (592)
|+++|+.|...
T Consensus 193 i~~l~~~L~~~ 203 (204)
T cd01878 193 LDELLEAIEEL 203 (204)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.1e-18 Score=192.94 Aligned_cols=174 Identities=19% Similarity=0.227 Sum_probs=122.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..+||+|+|.+|||||||+|+|++..+ ...+.+|+.+.....+.+++..+ .||||+|......
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~------------- 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVK------------- 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcccccc-------------
Confidence 468999999999999999999998764 45666777788778888888766 4699999821000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
.....+.|..+.. .++++||++|+|||+++..++.++. ++..+..
T Consensus 275 --------------------------------~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~- 320 (472)
T PRK03003 275 --------------------------------QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE- 320 (472)
T ss_pred --------------------------------ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-
Confidence 0011255655553 3688999999999999999988875 3343333
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.++|+|+|+||+|+..... +.....+...........++++|||++|.
T Consensus 321 ---~~~piIiV~NK~Dl~~~~~-----------------------------~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 321 ---AGRALVLAFNKWDLVDEDR-----------------------------RYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred ---cCCCEEEEEECcccCChhH-----------------------------HHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 4789999999999975310 00001111111111234679999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q psy1524 298 NITQVFKELLVQAKVKYN 315 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~ 315 (592)
||+++|+.+.+.+.....
T Consensus 369 gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 369 AVDKLVPALETALESWDT 386 (472)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999988765443
No 146
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.1e-18 Score=190.21 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=137.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+|+|+|++|||||||+|+|++..+ ..+...++.|...+.+.+.+.. .+.||||+|+..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r------------------ 257 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIR------------------ 257 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccc------------------
Confidence 36899999999999999999997654 3455666777777777776531 345699999810
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
..+... .+.|... ...+..||++|+|+|++++.+++.+..|...+... ..
T Consensus 258 --------------------~lp~~l--------ve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~ 307 (426)
T PRK11058 258 --------------------HLPHDL--------VAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA 307 (426)
T ss_pred --------------------cCCHHH--------HHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc
Confidence 000000 0223332 23468899999999999999888887666666554 33
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe-EEEcccCCCccH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG-FVEASAKDNTNI 299 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~-~~EvSAktg~gV 299 (592)
.++|+|+|+||+|+.... . .... .. ....+ ++++||++|.||
T Consensus 308 ~~~pvIiV~NKiDL~~~~-------------------------------~---~~~~-~~--~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDF-------------------------------E---PRID-RD--EENKPIRVWLSAQTGAGI 350 (426)
T ss_pred CCCCEEEEEEcccCCCch-------------------------------h---HHHH-HH--hcCCCceEEEeCCCCCCH
Confidence 578999999999986430 0 0000 01 11223 588999999999
Q ss_pred HHHHHHHHHHHHHhcccChhhhhhcccCCCCCCCCCCCCCCCCcceeeEEeecCCe-EEeecccCcchHHHHHH
Q psy1524 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGF-VEASAKDNTNITQVFKE 372 (592)
Q Consensus 300 eeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~~~~s~~pVpydta~slas~d~~~~f-vEiSAK~~~nI~~lf~e 372 (592)
+++++.+.+.+.......... .+.....-.--+.....+....+..++ +.+.++.+.....-|+.
T Consensus 351 deL~e~I~~~l~~~~~~~~~~--------~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (426)
T PRK11058 351 PLLFQALTERLSGEVAQHTLR--------LPPQEGRLRSRFYQLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCK 416 (426)
T ss_pred HHHHHHHHHHhhhccEEEEEE--------EChhhhhHHHHHHhcCceeEEEEcCCCEEEEEEEECHHHHHHHHH
Confidence 999999999874332211100 000000000012223334556666654 68888888777777765
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=3.1e-18 Score=160.92 Aligned_cols=157 Identities=24% Similarity=0.269 Sum_probs=106.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.|+|+|++|||||||+++|+.+.+...+.+++. +.....+..+ +....+.||||+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--------------------- 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--------------------- 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCc---------------------
Confidence 599999999999999999998877654443333 3222333333 13466778999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.|..++..++..+|++++|+|+++........ .+..+.. .
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~~----~ 101 (168)
T cd01887 61 ----------------------------------EAFTNMRARGASLTDIAILVVAADDGVMPQTIE-AIKLAKA----A 101 (168)
T ss_pred ----------------------------------HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHH-HHHHHHH----c
Confidence 677778888889999999999998854322222 2222322 4
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----hcCCCeEEEcccCCC
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----VDWENGFVEASAKDN 296 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----~~~~~~~~EvSAktg 296 (592)
++|+++|+||+|+..... ..+. +....+.. .....+++++||++|
T Consensus 102 ~~p~ivv~NK~Dl~~~~~-----------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T cd01887 102 NVPFIVALNKIDKPNANP-----------------------------ERVK-NELSELGLQGEDEWGGDVQIVPTSAKTG 151 (168)
T ss_pred CCCEEEEEEceecccccH-----------------------------HHHH-HHHHHhhccccccccCcCcEEEeecccC
Confidence 689999999999874310 0000 01111110 112457999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.||+++++++.+..
T Consensus 152 ~gi~~l~~~l~~~~ 165 (168)
T cd01887 152 EGIDDLLEAILLLA 165 (168)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=1.2e-18 Score=170.10 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=100.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...++|+|+|.+|||||||+|+|++..+...+.+++. .....+.++ .+++|||+|.+.....
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~------------- 68 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGV------------- 68 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCcccccccc-------------
Confidence 3468999999999999999999998877654444443 122223333 3677999996210000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh----cCCcEEEEEeCCCcCCHHHHHHHH----
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS----SADAFILVYAIDDPNSFEEIRLIR---- 211 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~----~AD~iIlVyDvsd~~Sfe~l~~~l---- 211 (592)
....++.++.++..++. .++++++|+|.++...+. ..|.
T Consensus 69 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~ 115 (201)
T PRK04213 69 -------------------------------PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGE 115 (201)
T ss_pred -------------------------------CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCC
Confidence 00012566666666654 346777777765432210 1110
Q ss_pred ----HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC---
Q psy1524 212 ----DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW--- 284 (592)
Q Consensus 212 ----~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~--- 284 (592)
..+.......++|+++|+||+|+... + .+....+++...
T Consensus 116 ~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------------------------------~---~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 116 IPIDVEMFDFLRELGIPPIVAVNKMDKIKN-------------------------------R---DEVLDEIAERLGLYP 161 (201)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEECccccCc-------------------------------H---HHHHHHHHHHhcCCc
Confidence 11111112247899999999998654 1 112233322111
Q ss_pred -----CCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 285 -----ENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 285 -----~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
..++++|||++| ||+++|+.|++.+.
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 125899999999 99999999998763
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.78 E-value=5.1e-18 Score=152.45 Aligned_cols=155 Identities=34% Similarity=0.563 Sum_probs=116.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHH
Q psy1524 67 VMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCL 145 (592)
Q Consensus 67 IvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~ 145 (592)
|+|.+|+|||||++++++... .....+|..+.....+...+....+.+||++|.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~------------------------- 55 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQ------------------------- 55 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCCh-------------------------
Confidence 589999999999999998877 455555555666666666677788999999998
Q ss_pred HHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE
Q psy1524 146 RRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225 (592)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI 225 (592)
..+......++..+|++++|+|+++..++..+..|+..........+.|+
T Consensus 56 ------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (157)
T cd00882 56 ------------------------------ERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI 105 (157)
T ss_pred ------------------------------HHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE
Confidence 44444556678899999999999999999888887433333335678999
Q ss_pred EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHH
Q psy1524 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305 (592)
Q Consensus 226 ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~ 305 (592)
++|+||+|+.... .................+++++||+++.|+++++++
T Consensus 106 ivv~nk~D~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 106 ILVGNKIDLPEER-------------------------------VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred EEEEecccccccc-------------------------------chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 9999999987651 111111122222345678999999999999999998
Q ss_pred HH
Q psy1524 306 LL 307 (592)
Q Consensus 306 Li 307 (592)
+.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 75
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=2.5e-18 Score=162.55 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=108.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524 67 VMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC 144 (592)
Q Consensus 67 IvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~ 144 (592)
|+|++|||||||+|+|++..+ ...+..++.+.....+.++ +. .+.||||||+.+....
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~i~DtpG~~~~~~~------------------ 60 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGA--RIQVADIPGLIEGASE------------------ 60 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCC--eEEEEeccccchhhhc------------------
Confidence 589999999999999998764 3455555555444455555 54 4567999998210000
Q ss_pred HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc------CCHHHHHHHHHHHHHhh
Q psy1524 145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP------NSFEEIRLIRDHIFETK 218 (592)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~------~Sfe~l~~~l~~L~~~~ 218 (592)
.+........++.++|++++|+|+++. .+++++..|...+....
T Consensus 61 ------------------------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (176)
T cd01881 61 ------------------------------GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYD 110 (176)
T ss_pred ------------------------------CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhh
Confidence 011111112346789999999999998 57888888888776542
Q ss_pred cC------CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524 219 AS------TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292 (592)
Q Consensus 219 ~~------~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS 292 (592)
.. .+.|+++|+||+|+.... .+......... ......++++|
T Consensus 111 ~~~~~~~~~~~p~ivv~NK~Dl~~~~-------------------------------~~~~~~~~~~~-~~~~~~~~~~S 158 (176)
T cd01881 111 LETILGLLTAKPVIYVLNKIDLDDAE-------------------------------ELEEELVRELA-LEEGAEVVPIS 158 (176)
T ss_pred hhhHHHHHhhCCeEEEEEchhcCchh-------------------------------HHHHHHHHHHh-cCCCCCEEEEe
Confidence 21 478999999999997541 11111111222 24456799999
Q ss_pred cCCCccHHHHHHHHHHH
Q psy1524 293 AKDNTNITQVFKELLVQ 309 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~ 309 (592)
|+++.|++++++.+++.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.1e-17 Score=154.62 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=103.9
Q ss_pred EEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 66 VVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 66 vIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+++|.+|||||||+|+|++.. +.+.+.+++.+........++ ..+.+|||||+.....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~------------------ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDE------------------ 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchh------------------
Confidence 589999999999999999764 445566666666666666666 4566799999921000
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
.....+......++..+|++++|+|+++..+..... +...+.. .+.
T Consensus 61 -----------------------------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~----~~~ 106 (157)
T cd01894 61 -----------------------------GISKEIREQAELAIEEADVILFVVDGREGLTPADEE-IAKYLRK----SKK 106 (157)
T ss_pred -----------------------------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-HHHHHHh----cCC
Confidence 000112223344678899999999998776554432 2333333 258
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+++|+||+|+.... .. ...+.. .....++++||++|.||+++|
T Consensus 107 piiiv~nK~D~~~~~-------------------------------~~----~~~~~~-~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 107 PVILVVNKVDNIKEE-------------------------------DE----AAEFYS-LGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred CEEEEEECcccCChH-------------------------------HH----HHHHHh-cCCCCeEEEecccCCCHHHHH
Confidence 999999999997641 11 112222 222368999999999999999
Q ss_pred HHHHHH
Q psy1524 304 KELLVQ 309 (592)
Q Consensus 304 ~~Li~~ 309 (592)
+.+++.
T Consensus 151 ~~l~~~ 156 (157)
T cd01894 151 DAILEL 156 (157)
T ss_pred HHHHhh
Confidence 999875
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=1.2e-17 Score=182.90 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=116.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....+||+|+|++|||||||+|+|++.. ++..+.+|+.+.....+.+++..+ ++|||+|+.+...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG~~~~~~----------- 266 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAGIREHAD----------- 266 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCCcccchh-----------
Confidence 3456899999999999999999999764 457778888888888888888655 6799999822100
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
..+..++ .....+++.+|++|+|||++++.+++.. |+..+..
T Consensus 267 --~ie~~gi----------------------------------~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 267 --FVERLGI----------------------------------EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK 308 (442)
T ss_pred --HHHHHHH----------------------------------HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh
Confidence 0011111 1223468899999999999999988775 5555432
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.++|+|+|+||+|+... ....+++ ....+++++||++
T Consensus 309 ----~~~piIlV~NK~Dl~~~-------------------------------------~~~~~~~-~~~~~~~~vSak~- 345 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKIN-------------------------------------SLEFFVS-SKVLNSSNLSAKQ- 345 (442)
T ss_pred ----CCCCEEEEEECccCCCc-------------------------------------chhhhhh-hcCCceEEEEEec-
Confidence 36899999999998532 0112222 3345689999998
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
.||+++|+.+.+.+..
T Consensus 346 ~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 LKIKALVDLLTQKINA 361 (442)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999998854
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=1.5e-17 Score=175.76 Aligned_cols=166 Identities=18% Similarity=0.175 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
..|+|||.+|||||||+++|+.... +.+|..|+.......+.+++ ...++||||||+.+.....
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~-------------- 222 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEG-------------- 222 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCccc--------------
Confidence 5889999999999999999997643 45666777666666666654 2345669999982110000
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhh
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFETK 218 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~ 218 (592)
.......-..+.++|++|+|+|+++. .+++++..|..++..+.
T Consensus 223 ----------------------------------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 223 ----------------------------------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred ----------------------------------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 01111112235679999999999987 68888888888887652
Q ss_pred c-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 219 A-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 219 ~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
. ..++|+|||+||+|+.... . ..+..+.+++ .....++++||++++
T Consensus 269 ~~l~~kp~IIV~NK~DL~~~~-------------------------------~-~~~~~~~l~~-~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 269 PELAEKPRIVVLNKIDLLDEE-------------------------------E-LAELLKELKK-ALGKPVFPISALTGE 315 (329)
T ss_pred hhhccCCEEEEEeCccCCChH-------------------------------H-HHHHHHHHHH-HcCCcEEEEEccCCc
Confidence 1 2478999999999997541 1 1223334443 334679999999999
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
||+++++.+.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 154
>KOG0073|consensus
Probab=99.76 E-value=2.6e-17 Score=153.49 Aligned_cols=165 Identities=17% Similarity=0.276 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+.++|+|+|..|+|||||+++|.+.. .+...||.+ +-.+++.+++ +.+++||.+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g-f~Iktl~~~~--~~L~iwDvGGq------------------- 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG-FQIKTLEYKG--YTLNIWDVGGQ------------------- 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc-eeeEEEEecc--eEEEEEEcCCc-------------------
Confidence 458999999999999999999999665 445566665 3334455555 67788999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
..++..++.||..+|++|+|+|++|+..+++....+..+..-..
T Consensus 71 ------------------------------------~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer 114 (185)
T KOG0073|consen 71 ------------------------------------KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER 114 (185)
T ss_pred ------------------------------------chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh
Confidence 78899999999999999999999999999888777666654322
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh-HHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY-DTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~-ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
-...|++|++||.|+...-. ...+.. -....+++ ....+.+-|||.+|++
T Consensus 115 laG~~~Lvlank~dl~~~l~----------------------------~~~i~~~~~L~~l~k-s~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 115 LAGAPLLVLANKQDLPGALS----------------------------LEEISKALDLEELAK-SHHWRLVKCSAVTGED 165 (185)
T ss_pred hcCCceEEEEecCcCccccC----------------------------HHHHHHhhCHHHhcc-ccCceEEEEecccccc
Confidence 34589999999999974300 011111 11223333 5567899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
+.+-|++++..+..
T Consensus 166 l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999865
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=1.1e-17 Score=155.46 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=103.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHH
Q psy1524 67 VMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCL 145 (592)
Q Consensus 67 IvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~ 145 (592)
|+|.+|||||||+|++++..+. ..+..++.+.....+.+++. .+.||||||+......
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~------------------- 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPY------------------- 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCC-------------------
Confidence 5899999999999999987644 34444555666667777774 5677999998211000
Q ss_pred HHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 146 RRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
..-..+...++. .+|++|+|+|+++..+. ..++..+.. .++
T Consensus 60 ------------------------------~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~ 102 (158)
T cd01879 60 ------------------------------SEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGL 102 (158)
T ss_pred ------------------------------ChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCC
Confidence 001123444554 89999999999876543 234444433 368
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|+|+||+|+.+. ..+..+ ...++. ..+.+++++||++|.|++++|
T Consensus 103 ~~iiv~NK~Dl~~~-------------------------------~~~~~~-~~~~~~-~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 103 PVVVALNMIDEAEK-------------------------------RGIKID-LDKLSE-LLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred CEEEEEehhhhccc-------------------------------ccchhh-HHHHHH-hhCCCeEEEEccCCCCHHHHH
Confidence 99999999999754 112222 233333 345679999999999999999
Q ss_pred HHHHHHH
Q psy1524 304 KELLVQA 310 (592)
Q Consensus 304 ~~Li~~i 310 (592)
+.+.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9988764
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=2.4e-17 Score=152.18 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
++|+++|++|||||||++++++..+ .....+++.+.....+..++ ..+.+|||+|..+.... .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~-------------~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDE-------------I 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcch-------------H
Confidence 5899999999999999999997764 34455555566666666665 45567999998211000 0
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+ .........++..+|++++|+|++++.+......+.. .
T Consensus 67 ~----------------------------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~ 105 (157)
T cd04164 67 E----------------------------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------P 105 (157)
T ss_pred H----------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------h
Confidence 0 0011122345778999999999999888877654433 3
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
...|+++|+||+|+.+.. .. .......+++++||+++.|++
T Consensus 106 ~~~~vi~v~nK~D~~~~~-------------------------------~~--------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDS-------------------------------EL--------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred cCCCEEEEEEchhcCCcc-------------------------------cc--------ccccCCCceEEEECCCCCCHH
Confidence 478999999999997651 11 122445679999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.1e-17 Score=162.91 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc--CCCCCCcc------------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY--NTFSPKYK------------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~------------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~ 127 (592)
-+|+|+|.+|||||||+++|+. +.|...+. .+.+ +.......++...+.++||||+|+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~------- 75 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH------- 75 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc-------
Confidence 3899999999999999999997 56654331 1122 222333344555678888999999
Q ss_pred ccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH
Q psy1524 128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI 207 (592)
Q Consensus 128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l 207 (592)
++|..+...+++.+|++++|||+++.. +...
T Consensus 76 ------------------------------------------------~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~ 106 (194)
T cd01891 76 ------------------------------------------------ADFGGEVERVLSMVDGVLLLVDASEGP-MPQT 106 (194)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhcCEEEEEEECCCCc-cHHH
Confidence 778888888999999999999998753 3333
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 208 RLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 208 ~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..++..+.. .++|+++|+||+|+...
T Consensus 107 ~~~~~~~~~----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 107 RFVLKKALE----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 444443322 36899999999999643
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=8.6e-18 Score=184.61 Aligned_cols=155 Identities=26% Similarity=0.383 Sum_probs=114.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..++|+|+|++|||||||+|+|++... ...+.+|+.+.....+.+++.. +.||||+|+.+. ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~-------------~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRET-------------DD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCC-------------cc
Confidence 448999999999999999999998753 5677788888888888888855 566999998211 00
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
..+.+++++ ...++..+|++|+|||++++.++++...|..
T Consensus 279 ~ie~~gi~~----------------------------------~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------ 318 (449)
T PRK05291 279 EVEKIGIER----------------------------------SREAIEEADLVLLVLDASEPLTEEDDEILEE------ 318 (449)
T ss_pred HHHHHHHHH----------------------------------HHHHHHhCCEEEEEecCCCCCChhHHHHHHh------
Confidence 111111111 1235889999999999999988876544332
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..+.|+++|+||+|+.... .+. .....+++++||++|.|
T Consensus 319 -~~~~piiiV~NK~DL~~~~-------------------------------~~~---------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 319 -LKDKPVIVVLNKADLTGEI-------------------------------DLE---------EENGKPVIRISAKTGEG 357 (449)
T ss_pred -cCCCCcEEEEEhhhccccc-------------------------------hhh---------hccCCceEEEEeeCCCC
Confidence 3468999999999997541 111 12345689999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++++.+.+.+.
T Consensus 358 I~~L~~~L~~~l~ 370 (449)
T PRK05291 358 IDELREAIKELAF 370 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998873
No 159
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4.2e-17 Score=152.62 Aligned_cols=165 Identities=20% Similarity=0.303 Sum_probs=107.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.++|+++|.+|+|||||+|+|++..+. .....++.+.....+..++.. +.+|||+|.......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~------------- 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKV------------- 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccch-------------
Confidence 479999999999999999999987532 344445545555566667655 456999998211000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
....+.+..+. ..++..+|++++|+|++++.+..... ++..+.
T Consensus 67 --------------------------------~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~--- 110 (174)
T cd01895 67 --------------------------------EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLIL--- 110 (174)
T ss_pred --------------------------------hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---
Confidence 00012222222 23567899999999999988866543 222222
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEcccC
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEASAK 294 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~EvSAk 294 (592)
..+.|+++|+||+|+.... ....+......+.. ...+++++||+
T Consensus 111 -~~~~~~iiv~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (174)
T cd01895 111 -EEGKALVIVVNKWDLVEKD-------------------------------SKTMKEFKKEIRRKLPFLDYAPIVFISAL 158 (174)
T ss_pred -hcCCCEEEEEeccccCCcc-------------------------------HHHHHHHHHHHHhhcccccCCceEEEecc
Confidence 2368999999999987541 11112212222111 23679999999
Q ss_pred CCccHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQ 309 (592)
Q Consensus 295 tg~gVeeLf~~Li~~ 309 (592)
++.|++++++.+.+.
T Consensus 159 ~~~~i~~~~~~l~~~ 173 (174)
T cd01895 159 TGQGVDKLFDAIDEV 173 (174)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999988753
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=3e-17 Score=178.88 Aligned_cols=175 Identities=20% Similarity=0.277 Sum_probs=118.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....++|+++|.+|||||||+|+|++... .....+|+.+.....+..++.. +.+|||+|+.......
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~--------- 237 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVT--------- 237 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccch---------
Confidence 34568999999999999999999997653 4566777777777777777764 5569999982211000
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
...+.|..+.. .+++.||++|+|+|+++..+..+.. ++..+.
T Consensus 238 ------------------------------------~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~ 280 (429)
T TIGR03594 238 ------------------------------------EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL 280 (429)
T ss_pred ------------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH
Confidence 01133433332 3688999999999999988877654 233332
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
+ .++|+|+|+||+|+.+..... ..+. ............+++++|||++
T Consensus 281 ~----~~~~iiiv~NK~Dl~~~~~~~---------------------------~~~~-~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 281 E----AGKALVIVVNKWDLVKDEKTR---------------------------EEFK-KELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred H----cCCcEEEEEECcccCCCHHHH---------------------------HHHH-HHHHHhcccCCCCceEEEeCCC
Confidence 2 368999999999997220000 0000 1111111112356899999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+.+.+.+...
T Consensus 329 g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877543
No 161
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=8.1e-18 Score=159.24 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
++|+++|.||||||||+|+|++... ..++..+|.+.....+.+++..+.+ +|+||.-+ ....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~l--vDlPG~ys------------l~~~--- 63 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVEL--VDLPGIYS------------LSSK--- 63 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEE--EE----SS------------SSSS---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEE--EECCCccc------------CCCC---
Confidence 6899999999999999999998764 3677888888888888888866555 99999711 1100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh--hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS--ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
..-..+...+ ....|++|+|.|+++. +.-..+..++.+.
T Consensus 64 ----------------------------------s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~-- 104 (156)
T PF02421_consen 64 ----------------------------------SEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLEL-- 104 (156)
T ss_dssp ----------------------------------SHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHT--
T ss_pred ----------------------------------CcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHc--
Confidence 1111233333 3689999999999874 3323344555553
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
++|+|+|+||+|+.... .+.. ....+.+ ..+++++.+||+++.|+
T Consensus 105 --g~P~vvvlN~~D~a~~~-------------------------------g~~i-d~~~Ls~-~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 105 --GIPVVVVLNKMDEAERK-------------------------------GIEI-DAEKLSE-RLGVPVIPVSARTGEGI 149 (156)
T ss_dssp --TSSEEEEEETHHHHHHT-------------------------------TEEE--HHHHHH-HHTS-EEEEBTTTTBTH
T ss_pred --CCCEEEEEeCHHHHHHc-------------------------------CCEE-CHHHHHH-HhCCCEEEEEeCCCcCH
Confidence 69999999999998762 2221 2334444 45789999999999999
Q ss_pred HHHHHHH
Q psy1524 300 TQVFKEL 306 (592)
Q Consensus 300 eeLf~~L 306 (592)
+++++.+
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999865
No 162
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=1.6e-17 Score=172.25 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=128.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+.-.|+|+|.+|||||||+|+|++..+. .....|+.+.....+..++ ..+.|+||||......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~------------- 68 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKR------------- 68 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchh-------------
Confidence 4567999999999999999999988653 4445555554444333344 4566799999821100
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
...+.+.......+..+|++++|+|+++..+- ....++..+.
T Consensus 69 ----------------------------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~--- 110 (292)
T PRK00089 69 ----------------------------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK--- 110 (292)
T ss_pred ----------------------------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---
Confidence 00022223334467889999999999883321 1222223232
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..+.|+++|+||+|+.... ....+....+.+......++++||+++.|
T Consensus 111 -~~~~pvilVlNKiDl~~~~-------------------------------~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 111 -KVKTPVILVLNKIDLVKDK-------------------------------EELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred -hcCCCEEEEEECCcCCCCH-------------------------------HHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 2368999999999997331 11123344444433456799999999999
Q ss_pred HHHHHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeec
Q psy1524 299 ITQVFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWE 352 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~ 352 (592)
++++++.+.+.+.......+......... ......-...+||..+..+.+++.+
T Consensus 159 v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~ 221 (292)
T PRK00089 159 VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER 221 (292)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC
Confidence 99999999988754433322211111000 0011245778999999887766554
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.3e-17 Score=181.24 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=112.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..+|+|+|.+|||||||+|+|++..+ ......++.+.....+.+++.. +.||||+|+....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~--------------- 100 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDA--------------- 100 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcc---------------
Confidence 37999999999999999999998754 2444445556666666777765 5569999982100
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
....+.+......++..||++|+|||+++..++.. ..+...+..
T Consensus 101 --------------------------------~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--- 144 (472)
T PRK03003 101 --------------------------------KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR--- 144 (472)
T ss_pred --------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---
Confidence 00013455556678899999999999999887654 334444433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
.++|+|+|+||+|+.... .+. ..+...... ..++|||++|.||
T Consensus 145 -~~~piilV~NK~Dl~~~~----------------------------------~~~-~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 145 -SGKPVILAANKVDDERGE----------------------------------ADA-AALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred -cCCCEEEEEECccCCccc----------------------------------hhh-HHHHhcCCC-CeEEEEcCCCCCc
Confidence 478999999999986420 011 112221222 3579999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+++|+.+++.+..
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988754
No 164
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.74 E-value=1.3e-17 Score=148.84 Aligned_cols=115 Identities=33% Similarity=0.542 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
||+|+|++|||||||+++|++..+. ..+..+.. ........+......+.+||++|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------- 60 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ-------------------- 60 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--------------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--------------------
Confidence 7999999999999999999988876 12222222 333345566777667899999998
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-c
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-A 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~ 219 (592)
+.+......++..+|++|+|||++++.||+.+..++..+.... .
T Consensus 61 -----------------------------------~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~ 105 (119)
T PF08477_consen 61 -----------------------------------EEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR 105 (119)
T ss_dssp -----------------------------------HCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------ceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc
Confidence 5555555556899999999999999999999877666555543 2
Q ss_pred CCCCCEEEEEeCCC
Q psy1524 220 STAVPIVVVGNKSD 233 (592)
Q Consensus 220 ~~~~PIILVgNK~D 233 (592)
..++|+|||+||.|
T Consensus 106 ~~~~piilv~nK~D 119 (119)
T PF08477_consen 106 DKNIPIILVGNKSD 119 (119)
T ss_dssp SSCSEEEEEEE-TC
T ss_pred CCCCCEEEEEeccC
Confidence 45699999999998
No 165
>KOG3883|consensus
Probab=99.74 E-value=3.2e-17 Score=151.12 Aligned_cols=167 Identities=30% Similarity=0.429 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
-...||+++|..+||||+|+.+++.+... ..+.+|++|.|...+..+ +..-.+.|.||.|..
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq--------------- 71 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQ--------------- 71 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeeccccc---------------
Confidence 35579999999999999999999966443 677899999998887764 445678889999981
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
..-..+-..|+.-+|++++|||..|++||..+..+-.+|.+
T Consensus 72 ---------------------------------------~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk 112 (198)
T KOG3883|consen 72 ---------------------------------------GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDK 112 (198)
T ss_pred ---------------------------------------CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhh
Confidence 11134556788899999999999999999999998888888
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
......+||++++||+|+.+. +.+..+.++.+++ ...+..+|++|+..
T Consensus 113 ~KdKKEvpiVVLaN~rdr~~p-------------------------------~~vd~d~A~~Wa~-rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 113 HKDKKEVPIVVLANKRDRAEP-------------------------------REVDMDVAQIWAK-REKVKLWEVTAMDR 160 (198)
T ss_pred ccccccccEEEEechhhcccc-------------------------------hhcCHHHHHHHHh-hhheeEEEEEeccc
Confidence 777788999999999999876 7889999999998 56778999999999
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
..+-|.|..++..+..
T Consensus 161 ~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQ 176 (198)
T ss_pred hhhhhHHHHHHHhccC
Confidence 9999999999888744
No 166
>COG1159 Era GTPase [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=164.94 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=144.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+.--|+|+|.||||||||+|++++.+. ++....||.......++.++.++.+ +||||.... +
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIf--vDTPGih~p-------------k 68 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIF--VDTPGIHKP-------------K 68 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEE--EeCCCCCCc-------------c
Confidence 4567899999999999999999998865 4778888888888888888766665 999999321 1
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
..+. +.+.......+.++|+++||+|+++...- .....++.+.+
T Consensus 69 ~~l~----------------------------------~~m~~~a~~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~- 112 (298)
T COG1159 69 HALG----------------------------------ELMNKAARSALKDVDLILFVVDADEGWGP-GDEFILEQLKK- 112 (298)
T ss_pred hHHH----------------------------------HHHHHHHHHHhccCcEEEEEEeccccCCc-cHHHHHHHHhh-
Confidence 1111 22333344468899999999999874332 22223343433
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.+.|+|++.||+|...+. .........+.........+++||++|.
T Consensus 113 ---~~~pvil~iNKID~~~~~-------------------------------~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 113 ---TKTPVILVVNKIDKVKPK-------------------------------TVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred ---cCCCeEEEEEccccCCcH-------------------------------HHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 468999999999988761 1111222222222334469999999999
Q ss_pred cHHHHHHHHHHHHHHhcccChhhhhhcccCCCC---------CCCCCCCCCCCCcceeeEEeec-CCeEEeec
Q psy1524 298 NITQVFKELLVQAKVKYNLSPALRRRRRQSLPP---------VQHSPNPVPYDTTESVVQVDWE-NGFVEASA 360 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~---------~~~s~~pVpydta~slas~d~~-~~fvEiSA 360 (592)
|++.+.+.+...+.+.....|...-..+..... ...-..++||..+..+..++.+ .+-+.+.|
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a 231 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHA 231 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEE
Confidence 999999999999877665555433222221111 1234678999999888877764 44444443
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=5.7e-17 Score=154.78 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-----------------eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-----------------EEMHHEDFSMNGVHLKLDILDTSGEQSGKGL 126 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-----------------~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~ 126 (592)
+|+|+|.+|||||||+|+|++......+..+. .+.....+... ...+.||||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~------ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGH------ 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCc------
Confidence 48999999999999999999876654332211 12222222333 356777999998
Q ss_pred cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524 127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE 206 (592)
Q Consensus 127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~ 206 (592)
..+......++..+|++++|+|+++..+...
T Consensus 73 -------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 103 (189)
T cd00881 73 -------------------------------------------------EDFSSEVIRGLSVSDGAILVVDANEGVQPQT 103 (189)
T ss_pred -------------------------------------------------HHHHHHHHHHHHhcCEEEEEEECCCCCcHHH
Confidence 5566677778899999999999988765543
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---- 282 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---- 282 (592)
. .++..+.. .+.|+++|+||+|+...... ....++.....+.
T Consensus 104 ~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 104 R-EHLRIARE----GGLPIIVAINKIDRVGEEDL-----------------------------EEVLREIKELLGLIGFI 149 (189)
T ss_pred H-HHHHHHHH----CCCCeEEEEECCCCcchhcH-----------------------------HHHHHHHHHHHcccccc
Confidence 3 23333322 47899999999999753100 0011122222211
Q ss_pred ---------cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 ---------DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ---------~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
....+++++||++|.|++++|+.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2457799999999999999999998875
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=1.6e-16 Score=172.53 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..|+|||.+|||||||||++++... ..+|..||.+.....+.++ +. .+.||||||..++.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~--~~~laD~PGliega---------------- 220 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGR--SFVMADIPGLIEGA---------------- 220 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCc--eEEEEECCCCcccc----------------
Confidence 4899999999999999999997653 2467777766555555554 43 45669999982110
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH---hhhcCCcEEEEEeCCCc---CCHHHHHHHHHHH
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL---SISSADAFILVYAIDDP---NSFEEIRLIRDHI 214 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~---~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L 214 (592)
.....+... .+.+++++|+|+|+++. .+++++..|..+|
T Consensus 221 -----------------------------------~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL 265 (424)
T PRK12297 221 -----------------------------------SEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKEL 265 (424)
T ss_pred -----------------------------------cccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHH
Confidence 111112222 35679999999999865 6788888888888
Q ss_pred HHhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 215 FETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 215 ~~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
..+.. ..++|+|||+||+|+... .+....+.+. ...+++++||
T Consensus 266 ~~y~~~L~~kP~IVV~NK~DL~~~-----------------------------------~e~l~~l~~~-l~~~i~~iSA 309 (424)
T PRK12297 266 KLYNPRLLERPQIVVANKMDLPEA-----------------------------------EENLEEFKEK-LGPKVFPISA 309 (424)
T ss_pred hhhchhccCCcEEEEEeCCCCcCC-----------------------------------HHHHHHHHHH-hCCcEEEEeC
Confidence 77521 247899999999998432 1223344432 2357999999
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q psy1524 294 KDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~ 313 (592)
++++||+++++.+.+.+...
T Consensus 310 ~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887543
No 169
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4.7e-17 Score=174.54 Aligned_cols=165 Identities=26% Similarity=0.373 Sum_probs=126.9
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
..-..-+||+|+|.||||||||+|.|++.. ++.+...||.|.....+.++|.++.+ +||+|.+++
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l--~DTAGiRet----------- 278 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRL--VDTAGIRET----------- 278 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEE--EecCCcccC-----------
Confidence 334556999999999999999999999764 56889999999999999999966555 999999544
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
.+.+|+.|+.+++.. +..||.+++|+|.+.+.+-.+...+.
T Consensus 279 --~d~VE~iGIeRs~~~----------------------------------i~~ADlvL~v~D~~~~~~~~d~~~~~--- 319 (454)
T COG0486 279 --DDVVERIGIERAKKA----------------------------------IEEADLVLFVLDASQPLDKEDLALIE--- 319 (454)
T ss_pred --ccHHHHHHHHHHHHH----------------------------------HHhCCEEEEEEeCCCCCchhhHHHHH---
Confidence 345888899888774 88999999999999864333332211
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
....+.|+++|.||+||..+.. .... +.....+++.+||+
T Consensus 320 ---~~~~~~~~i~v~NK~DL~~~~~------------------------------------~~~~-~~~~~~~~i~iSa~ 359 (454)
T COG0486 320 ---LLPKKKPIIVVLNKADLVSKIE------------------------------------LESE-KLANGDAIISISAK 359 (454)
T ss_pred ---hcccCCCEEEEEechhcccccc------------------------------------cchh-hccCCCceEEEEec
Confidence 1345789999999999987621 0001 11234468999999
Q ss_pred CCccHHHHHHHHHHHHHHh
Q psy1524 295 DNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~ 313 (592)
+|+|+++|.+.+.+.+...
T Consensus 360 t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 360 TGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CccCHHHHHHHHHHHHhhc
Confidence 9999999999998887433
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.1e-16 Score=176.12 Aligned_cols=169 Identities=16% Similarity=0.119 Sum_probs=115.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+|+|||.+|||||||+|+|++... ..+|..||.+.....+.+++. .+.||||||..++....
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g------------- 223 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEG------------- 223 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchh-------------
Confidence 36899999999999999999997643 356777887776677777764 56679999982110000
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc----CCHHHHHHHHHHHHH
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP----NSFEEIRLIRDHIFE 216 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~----~Sfe~l~~~l~~L~~ 216 (592)
.......-..+.++|++|+|+|+++. +.++++..+..+|..
T Consensus 224 -----------------------------------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~ 268 (500)
T PRK12296 224 -----------------------------------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAA 268 (500)
T ss_pred -----------------------------------hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHH
Confidence 00000111246789999999999863 456666666666655
Q ss_pred hhc----------CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC
Q psy1524 217 TKA----------STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN 286 (592)
Q Consensus 217 ~~~----------~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~ 286 (592)
+.. ...+|+|||+||+|+.+. +.+.......+. ....
T Consensus 269 y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-------------------------------~el~e~l~~~l~--~~g~ 315 (500)
T PRK12296 269 YAPALDGDLGLGDLAERPRLVVLNKIDVPDA-------------------------------RELAEFVRPELE--ARGW 315 (500)
T ss_pred hhhcccccchhhhhcCCCEEEEEECccchhh-------------------------------HHHHHHHHHHHH--HcCC
Confidence 421 246899999999999754 111111111222 2246
Q ss_pred eEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 287 GFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 287 ~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
++++|||+++.||++++.+|.+.+...
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999988553
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=8.4e-17 Score=156.55 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC----CCCCC----ccCceeeeEEEEEeeC------------CeEEEEEEEeCCCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN----TFSPK----YKRTIEEMHHEDFSMN------------GVHLKLDILDTSGEQS 122 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~----~f~~~----~~~Tt~d~~~~~v~vd------------g~~v~L~I~DT~G~~~ 122 (592)
++|+++|.+|||||||+++|+.. .+... ...++.+.....+.++ +..+.++||||||+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-- 78 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-- 78 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc--
Confidence 58999999999999999999962 22211 1123333222223332 33567888999998
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
..+..........+|++++|+|+++..
T Consensus 79 -----------------------------------------------------~~~~~~~~~~~~~~d~vi~VvD~~~~~ 105 (192)
T cd01889 79 -----------------------------------------------------ASLIRTIIGGAQIIDLMLLVVDATKGI 105 (192)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence 222222223356789999999998865
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH-h
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV-Q 281 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la-~ 281 (592)
.......+. +... .+.|+++|+||+|+..... .....++..... .
T Consensus 106 ~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~-----------------------------~~~~~~~~~~~l~~ 151 (192)
T cd01889 106 QTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEE-----------------------------RERKIEKMKKKLQK 151 (192)
T ss_pred cHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHHH
Confidence 544433222 1121 2579999999999874310 011112222211 1
Q ss_pred h-----cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 282 V-----DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 282 ~-----~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
. ....+++++||++|.|++++++.+..++
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 0 2356799999999999999999999887
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=9.4e-17 Score=152.16 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+|+++|.+|||||||+|++.+..-.. ..| ..+.++.. .+|||||+....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~------------------- 51 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSH------------------- 51 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCC-------------------
Confidence 79999999999999999987543111 111 12222222 259999981100
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
.+.+..+. ..+..||++|+|||+++..++.. .|+..+ ..++
T Consensus 52 -------------------------------~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~-----~~~~ 92 (158)
T PRK15467 52 -------------------------------PRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI-----GVSK 92 (158)
T ss_pred -------------------------------HHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc-----cCCC
Confidence 01122222 23788999999999999887632 333322 2367
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCCCccHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKDNTNITQV 302 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAktg~gVeeL 302 (592)
|+++|+||+|+.+. ..+....++.... ..++++|||++|+||+++
T Consensus 93 ~ii~v~nK~Dl~~~----------------------------------~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 93 RQIAVISKTDMPDA----------------------------------DVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred CeEEEEEccccCcc----------------------------------cHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 99999999998543 1234444444222 358999999999999999
Q ss_pred HHHHHHHHH
Q psy1524 303 FKELLVQAK 311 (592)
Q Consensus 303 f~~Li~~i~ 311 (592)
|+.+.+.+.
T Consensus 139 ~~~l~~~~~ 147 (158)
T PRK15467 139 VDYLASLTK 147 (158)
T ss_pred HHHHHHhch
Confidence 999988773
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=1.2e-16 Score=147.88 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..+|+++|.+|||||||+|+|++..+. .....++....... .....+.+.+|||+|......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~-------------- 66 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKK-------------- 66 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchH--------------
Confidence 578999999999999999999977543 22223333222222 223345677799999821100
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
...+.+.......+..+|++++|+|+++..+.. ...+...+..
T Consensus 67 ---------------------------------~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~--- 109 (168)
T cd04163 67 ---------------------------------KLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK--- 109 (168)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH---
Confidence 000122333445688899999999999873221 1223333333
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
.+.|+++|+||+|+.... ....+....+.......+++++||+++.|+
T Consensus 110 -~~~~~iiv~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 110 -SKTPVILVLNKIDLVKDK-------------------------------EDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred -hCCCEEEEEEchhccccH-------------------------------HHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 268999999999987431 111222333333233467999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 300 TQVFKELLVQ 309 (592)
Q Consensus 300 eeLf~~Li~~ 309 (592)
+++++.+.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 174
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.5e-16 Score=182.24 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=120.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..+||+|+|.+|||||||+|+|++..+ ...+.+|+.+.....+.+++..+. ||||+|+......
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~--liDTaG~~~~~~~------------ 514 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWL--FIDTAGIKRRQHK------------ 514 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEE--EEECCCcccCccc------------
Confidence 458999999999999999999998864 567778888887777888887665 5999998211000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
....+.|..+.. .+++.+|++|+|+|+++..++.++.. +..+.+
T Consensus 515 ---------------------------------~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~- 559 (712)
T PRK09518 515 ---------------------------------LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD- 559 (712)
T ss_pred ---------------------------------chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH-
Confidence 001134444443 35789999999999999998887753 333333
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.++|+|+|+||+|+.+... ......+...........+++++||++|.
T Consensus 560 ---~~~piIiV~NK~DL~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~ii~iSAktg~ 607 (712)
T PRK09518 560 ---AGRALVLVFNKWDLMDEFR-----------------------------RQRLERLWKTEFDRVTWARRVNLSAKTGW 607 (712)
T ss_pred ---cCCCEEEEEEchhcCChhH-----------------------------HHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence 3689999999999975310 00000111111111223467899999999
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy1524 298 NITQVFKELLVQAKVKY 314 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~ 314 (592)
||+++|+.+.+.+....
T Consensus 608 gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 608 HTNRLAPAMQEALESWD 624 (712)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886533
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.5e-16 Score=171.03 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
++|+|+|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.||||+|+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~--------------- 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD--------------- 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---------------
Confidence 5899999999999999999997753 45666677777777777877 5667799999921000
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
.....+......++..+|++|+|+|+++..+..+.. ....+..
T Consensus 65 --------------------------------~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~-~~~~l~~---- 107 (435)
T PRK00093 65 --------------------------------GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEE-IAKILRK---- 107 (435)
T ss_pred --------------------------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence 000223444556788999999999998865544322 2222333
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.+.|+|+|+||+|+... .+....+.. .....++++||++|.||+
T Consensus 108 ~~~piilv~NK~D~~~~-----------------------------------~~~~~~~~~-lg~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 108 SNKPVILVVNKVDGPDE-----------------------------------EADAYEFYS-LGLGEPYPISAEHGRGIG 151 (435)
T ss_pred cCCcEEEEEECccCccc-----------------------------------hhhHHHHHh-cCCCCCEEEEeeCCCCHH
Confidence 27899999999996532 011222222 122237999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+.++...
T Consensus 152 ~l~~~I~~~~ 161 (435)
T PRK00093 152 DLLDAILEEL 161 (435)
T ss_pred HHHHHHHhhC
Confidence 9999998743
No 176
>KOG0070|consensus
Probab=99.70 E-value=1.4e-16 Score=151.97 Aligned_cols=161 Identities=14% Similarity=0.211 Sum_probs=125.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
....+|+++|-.|+||||++.+|..+++... .||++-.. ..+.+. .+.+++||..|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV-E~v~yk--n~~f~vWDvGGq------------------- 71 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV-ETVEYK--NISFTVWDVGGQ------------------- 71 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce-eEEEEc--ceEEEEEecCCC-------------------
Confidence 4568999999999999999999998888765 88888433 233444 477788999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++++.++..|+.+.+++|+|+|.+|++.+.+++..+..+.....
T Consensus 72 ------------------------------------~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 72 ------------------------------------EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE 115 (181)
T ss_pred ------------------------------------cccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence 89999999999999999999999999999998887777766544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH---Hhhc-CCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV---VQVD-WENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l---a~~~-~~~~~~EvSAkt 295 (592)
....|+++.+||.|+... .+..+.... .... ..--+-.|+|.+
T Consensus 116 l~~~~llv~aNKqD~~~a---------------------------------ls~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGA---------------------------------LSAAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred cCCceEEEEechhhcccc---------------------------------CCHHHHHhHhhhhccCCCCcEEeeccccc
Confidence 568999999999999865 111222211 1111 122256799999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|+|+.|.++++...+..
T Consensus 163 G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 99999999999998843
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=5.3e-16 Score=169.63 Aligned_cols=172 Identities=22% Similarity=0.305 Sum_probs=116.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...++|+|+|.+|||||||+|+|++.. ......+|+.+.....+..++..+. +|||+|........
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~--lvDT~G~~~~~~~~---------- 238 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYT--LIDTAGIRRKGKVT---------- 238 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEE--EEECCCCCCCcchh----------
Confidence 457999999999999999999999764 3455666777776666667776654 59999982211000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
...+.|..+.. .++..+|++|+|+|++++.+..+.. ++..+.+
T Consensus 239 -----------------------------------~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~ 282 (435)
T PRK00093 239 -----------------------------------EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE 282 (435)
T ss_pred -----------------------------------hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence 01133433332 3688999999999999988877654 3333322
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.++|+|+|+||+|+.+.... ..+. ++...........+++++||++|
T Consensus 283 ----~~~~~ivv~NK~Dl~~~~~~----------------------------~~~~-~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 283 ----AGRALVIVVNKWDLVDEKTM----------------------------EEFK-KELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred ----cCCcEEEEEECccCCCHHHH----------------------------HHHH-HHHHHhcccccCCCEEEEeCCCC
Confidence 36899999999998743100 0111 11111112234568999999999
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
.||+++|+.+.+....
T Consensus 330 ~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 330 QGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887644
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=5.1e-17 Score=160.27 Aligned_cols=119 Identities=13% Similarity=0.264 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+|+|+|++|||||||+++|..+.+...+..+........+...+..+.+.||||||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~----------------------- 58 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGH----------------------- 58 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCC-----------------------
Confidence 699999999999999999999888766554433222222222244567888999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC-CcEEEEEeCCCc-CCHHHHHHHHHHHHHhh--c
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA-DAFILVYAIDDP-NSFEEIRLIRDHIFETK--A 219 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A-D~iIlVyDvsd~-~Sfe~l~~~l~~L~~~~--~ 219 (592)
++++.+...+++.+ +++|+|+|+++. .++..+..++..+.... .
T Consensus 59 --------------------------------~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~ 106 (203)
T cd04105 59 --------------------------------PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV 106 (203)
T ss_pred --------------------------------HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc
Confidence 77777777888898 999999999997 67888777766554321 2
Q ss_pred CCCCCEEEEEeCCCCccc
Q psy1524 220 STAVPIVVVGNKSDLADE 237 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~ 237 (592)
...+|+++|+||+|+...
T Consensus 107 ~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 107 KNKIPVLIACNKQDLFTA 124 (203)
T ss_pred cCCCCEEEEecchhhccc
Confidence 358999999999998754
No 179
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.69 E-value=5.2e-16 Score=175.69 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=111.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCC-------CCCCccCce------e-eeEEEEEee-----CCeEEEEEEEeCCCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKRTI------E-EMHHEDFSM-----NGVHLKLDILDTSGEQS 122 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~Tt------~-d~~~~~v~v-----dg~~v~L~I~DT~G~~~ 122 (592)
.-+|+|+|..++|||||+++|+... +...+..+. + +.....+.+ ++..+.++||||||+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-- 80 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-- 80 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc--
Confidence 3489999999999999999999542 222222221 1 122222222 567789999999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
+.|......++..||++|+|||+++..
T Consensus 81 -----------------------------------------------------~dF~~~v~~~l~~aD~aILVvDat~g~ 107 (595)
T TIGR01393 81 -----------------------------------------------------VDFSYEVSRSLAACEGALLLVDAAQGI 107 (595)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHhCCEEEEEecCCCCC
Confidence 778878888999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV 282 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~ 282 (592)
++.....|+..+. .++|+|+|+||+|+.... ..+...++.+.
T Consensus 108 ~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~---------------------------------~~~~~~el~~~ 149 (595)
T TIGR01393 108 EAQTLANVYLALE-----NDLEIIPVINKIDLPSAD---------------------------------PERVKKEIEEV 149 (595)
T ss_pred CHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC---------------------------------HHHHHHHHHHH
Confidence 8877776655432 368999999999986431 01111222221
Q ss_pred cC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 DW--ENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ~~--~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.. ...++++||++|.||+++|+.+++.+
T Consensus 150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 150 IGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred hCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 11 12489999999999999999998876
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=6.5e-16 Score=166.67 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
..|+|||.+|||||||+|+|++... +..+..||.......+..++. ..+.|+||||..+.....
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~-------------- 224 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEG-------------- 224 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccch--------------
Confidence 3799999999999999999996643 467788888777666666542 234569999982110000
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC---CcCCHHHHHHHHHHHHHhh
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID---DPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs---d~~Sfe~l~~~l~~L~~~~ 218 (592)
.+ .-..+. ..+.++|++|+|+|++ +...++++..|+.++..+.
T Consensus 225 -~~--------------------------------Lg~~~l-~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 225 -AG--------------------------------LGIRFL-KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred -hh--------------------------------HHHHHH-HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 00 000111 2478899999999998 5667888888888887642
Q ss_pred c-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCCC
Q psy1524 219 A-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKDN 296 (592)
Q Consensus 219 ~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAktg 296 (592)
. ..+.|+|||+||+|+.... .+ .+....+.+.. ....++.+||+++
T Consensus 271 ~~L~~kP~IlVlNKiDl~~~~-------------------------------el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 271 PKLAEKPRWLVFNKIDLLDEE-------------------------------EA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred hhhcCCCEEEEEeCCccCChH-------------------------------HH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1 1368999999999986541 11 12233333321 2236899999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||+++++.|.+.+...
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999887543
No 181
>KOG1673|consensus
Probab=99.69 E-value=5e-17 Score=150.16 Aligned_cols=172 Identities=19% Similarity=0.353 Sum_probs=141.7
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
.+.-.+||.++|++.+|||||+-.++++.+.+.+..+.+ .+..+++.+.+..+.+.|||..|+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~---------------- 79 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ---------------- 79 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc----------------
Confidence 345679999999999999999999999999888888888 788899999999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+.+....++-+|+|+||.+.++++..+..|+.+.+.
T Consensus 80 ---------------------------------------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~ 120 (205)
T KOG1673|consen 80 ---------------------------------------REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARG 120 (205)
T ss_pred ---------------------------------------HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhc
Confidence 78888888889999999999999999999999999999877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ....+| |+||+|.|+.-. ++++. ..-...++..+++ ..+...|.||+..+
T Consensus 121 ~-NktAiP-ilvGTKyD~fi~-----lp~e~---------------------Q~~I~~qar~YAk-~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 121 L-NKTAIP-ILVGTKYDLFID-----LPPEL---------------------QETISRQARKYAK-VMNASLFFCSTSHS 171 (205)
T ss_pred c-CCccce-EEeccchHhhhc-----CCHHH---------------------HHHHHHHHHHHHH-HhCCcEEEeecccc
Confidence 6 344556 568999998643 11000 1111245667776 55667899999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||..+|..++.++...
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999998887543
No 182
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=6.6e-16 Score=149.48 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=106.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeE-EEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH-HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~-~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..++|+|+|.+|||||||+++|++..+...+.++.+... ...+.+ ...+.||||||+.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~------------ 85 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKV------------ 85 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCC------------
Confidence 34678999999999999999999998776544444443211 111122 25677899999721100
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
.....+++..+...++..+ +++++|+|++++.+..... +...+
T Consensus 86 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l 131 (196)
T PRK00454 86 ---------------------------------SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ-MIEWL 131 (196)
T ss_pred ---------------------------------CchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH-HHHHH
Confidence 0001134555555566544 6788999988765544321 22222
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
. ..++|+++|+||+|+..... ++...+.+....... ...++++||+
T Consensus 132 ~----~~~~~~iiv~nK~Dl~~~~~-----------------------------~~~~~~~i~~~l~~~-~~~~~~~Sa~ 177 (196)
T PRK00454 132 K----EYGIPVLIVLTKADKLKKGE-----------------------------RKKQLKKVRKALKFG-DDEVILFSSL 177 (196)
T ss_pred H----HcCCcEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHHhc-CCceEEEEcC
Confidence 2 23689999999999875411 111112233332211 5679999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAK 311 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~ 311 (592)
+|.|++++++.|.+.+.
T Consensus 178 ~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 178 KKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999987763
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=3.4e-16 Score=150.62 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=98.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....++|+|+|++|||||||+|+|++..+...+.++.+. .....+.+++ .+.||||||.......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~----------- 80 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVS----------- 80 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCC-----------
Confidence 356789999999999999999999987654333333331 1122233343 4677999998221000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
....+.+..+...+++. +|++|+|+|++++-+..+.. ++..+
T Consensus 81 ----------------------------------~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~ 125 (179)
T TIGR03598 81 ----------------------------------KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWL 125 (179)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHH
Confidence 00013445555555554 57999999998876665553 23333
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEccc
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASA 293 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSA 293 (592)
.. .+.|+++|+||+|+..... .....++.+...... ....+|++||
T Consensus 126 ~~----~~~pviiv~nK~D~~~~~~-----------------------------~~~~~~~i~~~l~~~~~~~~v~~~Sa 172 (179)
T TIGR03598 126 RE----RGIPVLIVLTKADKLKKSE-----------------------------LNKQLKKIKKALKKDADDPSVQLFSS 172 (179)
T ss_pred HH----cCCCEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHhhccCCCceEEEEC
Confidence 22 3689999999999875411 111123333333322 2347999999
Q ss_pred CCCccHH
Q psy1524 294 KDNTNIT 300 (592)
Q Consensus 294 ktg~gVe 300 (592)
++|+||+
T Consensus 173 ~~g~gi~ 179 (179)
T TIGR03598 173 LKKTGID 179 (179)
T ss_pred CCCCCCC
Confidence 9999974
No 184
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=7.6e-16 Score=164.91 Aligned_cols=172 Identities=24% Similarity=0.310 Sum_probs=126.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...+||+|+|.||||||||+|++++.+ .+.+...||.|.....++.+++.+.+ +||+|.+......
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~---------- 243 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVL--IDTAGIRRKGKIT---------- 243 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEE--EECCCCCcccccc----------
Confidence 467999999999999999999999775 45788899999999999999988877 9999994322211
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH-hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL-SISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
.+.|.|+..+.. .+..||++++|+|++.+-+-.+.. ....+
T Consensus 244 -----------------------------------e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i-- 285 (444)
T COG1160 244 -----------------------------------ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLI-- 285 (444)
T ss_pred -----------------------------------cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHH--
Confidence 112555555533 588999999999999887655443 22222
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH----HHHHhhcCCCeEEEcc
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT----ESVVQVDWENGFVEAS 292 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~----~~la~~~~~~~~~EvS 292 (592)
.....++|+|.||+|+.+.+ ..+.++. ..........+.+.+|
T Consensus 286 --~~~g~~~vIvvNKWDl~~~~-------------------------------~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 286 --EEAGRGIVIVVNKWDLVEED-------------------------------EATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred --HHcCCCeEEEEEccccCCch-------------------------------hhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 33578999999999998751 1222222 2222334456789999
Q ss_pred cCCCccHHHHHHHHHHHHHHhc
Q psy1524 293 AKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~~~~ 314 (592)
|++|.++.++|+.+.+......
T Consensus 333 A~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred ecCCCChHHHHHHHHHHHHHhc
Confidence 9999999999999988775543
No 185
>KOG0075|consensus
Probab=99.68 E-value=7.1e-17 Score=147.96 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+.+.++|-.++|||||+|....+.+.+...||.+-... .+....+.+.+||.+|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq--------------------- 75 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ--------------------- 75 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCC---------------------
Confidence 468999999999999999999999999988999884332 33444566677999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
.+|++|+..|+++++++++|+|+.|++..+....-+..|.....-.
T Consensus 76 ----------------------------------~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~ 121 (186)
T KOG0075|consen 76 ----------------------------------PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLT 121 (186)
T ss_pred ----------------------------------ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhc
Confidence 8999999999999999999999999988887777666666655567
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++.|||.|+...-... .+....+.. .-....+.+|.+||+...|++.
T Consensus 122 gip~LVLGnK~d~~~AL~~~----------------------------~li~rmgL~-sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 122 GIPLLVLGNKIDLPGALSKI----------------------------ALIERMGLS-SITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred CCcEEEecccccCcccccHH----------------------------HHHHHhCcc-ccccceEEEEEEEEcCCccHHH
Confidence 89999999999998651110 000000000 0012345599999999999999
Q ss_pred HHHHHHHHH
Q psy1524 302 VFKELLVQA 310 (592)
Q Consensus 302 Lf~~Li~~i 310 (592)
+.+++++.-
T Consensus 173 ~~~Wli~hs 181 (186)
T KOG0075|consen 173 TLDWLIEHS 181 (186)
T ss_pred HHHHHHHHh
Confidence 999999875
No 186
>KOG0096|consensus
Probab=99.67 E-value=7.9e-17 Score=153.52 Aligned_cols=163 Identities=22% Similarity=0.364 Sum_probs=135.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+|++++|+.|.||||+++|...+.|..+|.+|++ +.....+..+...+.+..|||+|+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq------------------ 69 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ------------------ 69 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccc------------------
Confidence 4579999999999999999999999999999999999 555555555555799999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
|.+..+...|+-.+.+.|++||++..-++.++..|+..+.+.
T Consensus 70 -------------------------------------Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv- 111 (216)
T KOG0096|consen 70 -------------------------------------EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV- 111 (216)
T ss_pred -------------------------------------eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH-
Confidence 778888888888999999999999999999999999999886
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
+.++|||++|||.|..... + ....|+ +-+ ..++.|+++||+++.|
T Consensus 112 -~~NiPiv~cGNKvDi~~r~--~-------------------------k~k~v~------~~r-kknl~y~~iSaksn~N 156 (216)
T KOG0096|consen 112 -RENIPIVLCGNKVDIKARK--V-------------------------KAKPVS------FHR-KKNLQYYEISAKSNYN 156 (216)
T ss_pred -hcCCCeeeeccceeccccc--c-------------------------ccccce------eee-cccceeEEeecccccc
Confidence 4679999999999986541 0 001111 112 4577899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
.+.-|.++.+.+...
T Consensus 157 fekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 157 FERPFLWLARKLTGD 171 (216)
T ss_pred cccchHHHhhhhcCC
Confidence 999999999988443
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=9.8e-16 Score=167.06 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+|+|+|.+|||||||+|+|++... ...+.+++.+.....+..++.. +.||||||.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~----------------- 61 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDD----------------- 61 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcc-----------------
Confidence 589999999999999999998753 4566677777777777777765 5669999982100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
...++.+......++..||++|+|+|+++..+..+. .+...+.+ .
T Consensus 62 ------------------------------~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~----~ 106 (429)
T TIGR03594 62 ------------------------------DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK----S 106 (429)
T ss_pred ------------------------------hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----h
Confidence 000134555566678999999999999887655442 23333433 3
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+.... . ....+.+ .....++++||++|.|+++
T Consensus 107 ~~piilVvNK~D~~~~~-------------------------------~----~~~~~~~-lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 107 GKPVILVANKIDGKKED-------------------------------A----VAAEFYS-LGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CCCEEEEEECccCCccc-------------------------------c----cHHHHHh-cCCCCeEEEeCCcCCChHH
Confidence 68999999999987541 1 1112222 2233689999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 302 VFKELLVQAK 311 (592)
Q Consensus 302 Lf~~Li~~i~ 311 (592)
+++.+.+.+.
T Consensus 151 ll~~i~~~l~ 160 (429)
T TIGR03594 151 LLDAILELLP 160 (429)
T ss_pred HHHHHHHhcC
Confidence 9999988763
No 188
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.66 E-value=2.6e-15 Score=169.51 Aligned_cols=156 Identities=26% Similarity=0.316 Sum_probs=108.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
..+..+|+|+|..++|||||+++|.+..+...+.+++. +.....+.+++.. .+.||||||+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGh----------------- 145 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGH----------------- 145 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCC-----------------
Confidence 34568999999999999999999998887765544443 3333444554331 5667999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.|..++..++..+|++|+|||+++...-..... +..+
T Consensus 146 --------------------------------------e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~--- 183 (587)
T TIGR00487 146 --------------------------------------EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHA--- 183 (587)
T ss_pred --------------------------------------cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHH---
Confidence 7888888888999999999999987543222221 2222
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh------hc--CCCeEE
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ------VD--WENGFV 289 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~------~~--~~~~~~ 289 (592)
...++|+|+++||+|+...+ .+.....+. .. ...+++
T Consensus 184 -~~~~vPiIVviNKiDl~~~~----------------------------------~e~v~~~L~~~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 184 -KAANVPIIVAINKIDKPEAN----------------------------------PDRVKQELSEYGLVPEDWGGDTIFV 228 (587)
T ss_pred -HHcCCCEEEEEECcccccCC----------------------------------HHHHHHHHHHhhhhHHhcCCCceEE
Confidence 22478999999999986431 111111111 01 135799
Q ss_pred EcccCCCccHHHHHHHHHHH
Q psy1524 290 EASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~ 309 (592)
++||++|.||+++|+.++..
T Consensus 229 ~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred EEECCCCCChHHHHHhhhhh
Confidence 99999999999999998743
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.65 E-value=2.2e-15 Score=137.30 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=103.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524 67 VMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC 144 (592)
Q Consensus 67 IvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~ 144 (592)
|+|.+|+|||||++++++..+. ....+++.+........+. ...+.+|||+|+......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~------------------ 61 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGL------------------ 61 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccc------------------
Confidence 5899999999999999976443 2333444444444433331 356777999998221000
Q ss_pred HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524 145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP 224 (592)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P 224 (592)
...+......++..+|++++|+|+++..+..... +.... ...+.|
T Consensus 62 ------------------------------~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~ 106 (163)
T cd00880 62 ------------------------------GREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKP 106 (163)
T ss_pred ------------------------------hhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCe
Confidence 0111234445678999999999999988877665 33333 235789
Q ss_pred EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH--HHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524 225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD--TTESVVQVDWENGFVEASAKDNTNITQV 302 (592)
Q Consensus 225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e--e~~~la~~~~~~~~~EvSAktg~gVeeL 302 (592)
+++|+||+|+..... .... ............+++++||+++.|++++
T Consensus 107 ~ivv~nK~D~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 107 VLLVLNKIDLLPEEE-------------------------------EEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEEEccccCChhh-------------------------------HHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999999876511 1100 0111222345678999999999999999
Q ss_pred HHHHHHH
Q psy1524 303 FKELLVQ 309 (592)
Q Consensus 303 f~~Li~~ 309 (592)
++.+.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 190
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=6.3e-15 Score=148.61 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=44.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
+|+|+|++|||||||+|+|++.. ....+..|+.+.....+.+++. .+++|||||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~ 57 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGI 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCc
Confidence 79999999999999999999765 3456666776666677777774 5666999998
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=2.6e-15 Score=160.80 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..|+|||.||||||||+|||++.. .++++..+|.|.......+.+.. +.++||+|..+... ..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~------------~~l 69 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDE------------DEL 69 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCc------------hHH
Confidence 589999999999999999999774 45899999999888888888876 45599999932210 000
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+..........+..||++|||+|....-+-++-. ....|+ .
T Consensus 70 ----------------------------------~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr----~ 110 (444)
T COG1160 70 ----------------------------------QELIREQALIAIEEADVILFVVDGREGITPADEE-IAKILR----R 110 (444)
T ss_pred ----------------------------------HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----h
Confidence 0222233344688999999999998755543322 223333 2
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+|+|+||+|-... .+.+..+.. ......+.+||.+|.|+.
T Consensus 111 ~~kpviLvvNK~D~~~~-----------------------------------e~~~~efys-lG~g~~~~ISA~Hg~Gi~ 154 (444)
T COG1160 111 SKKPVILVVNKIDNLKA-----------------------------------EELAYEFYS-LGFGEPVPISAEHGRGIG 154 (444)
T ss_pred cCCCEEEEEEcccCchh-----------------------------------hhhHHHHHh-cCCCCceEeehhhccCHH
Confidence 46899999999997633 123444544 334458899999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
+|++++++.+
T Consensus 155 dLld~v~~~l 164 (444)
T COG1160 155 DLLDAVLELL 164 (444)
T ss_pred HHHHHHHhhc
Confidence 9999999987
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=5.3e-15 Score=171.22 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=109.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+|+|+|.+|||||||+|+|++... ......++.+........++.. +.+|||+|+.....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~------------- 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVE------------- 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCc-------------
Confidence 357899999999999999999997653 3555555556666666666654 55699999821000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
.....+......++..||++|+|+|+++.-+..+ ..|...+..
T Consensus 339 ----------------------------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-- 381 (712)
T PRK09518 339 ----------------------------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-- 381 (712)
T ss_pred ----------------------------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--
Confidence 0002344455667899999999999987533222 234444433
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.++|+|+|+||+|+.... .....+...... ..++|||++|.|
T Consensus 382 --~~~pvIlV~NK~D~~~~~-----------------------------------~~~~~~~~lg~~-~~~~iSA~~g~G 423 (712)
T PRK09518 382 --AGKPVVLAVNKIDDQASE-----------------------------------YDAAEFWKLGLG-EPYPISAMHGRG 423 (712)
T ss_pred --cCCCEEEEEECcccccch-----------------------------------hhHHHHHHcCCC-CeEEEECCCCCC
Confidence 478999999999985430 111222222223 357899999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
|+++|+.+++.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999988744
No 193
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=4.9e-15 Score=169.92 Aligned_cols=157 Identities=25% Similarity=0.365 Sum_probs=110.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee---eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~---d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
.+..+|+|+|..++|||||+++|....+.....+++. ..+...+..++..+.+.||||||+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh---------------- 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH---------------- 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH----------------
Confidence 4667999999999999999999998777644333332 223333334455577888999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.|..++..++..+|++|+|+|+++.........+ ..+
T Consensus 306 ---------------------------------------e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~-- 343 (742)
T CHL00189 306 ---------------------------------------EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYI-- 343 (742)
T ss_pred ---------------------------------------HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHH--
Confidence 88999999999999999999999885433222211 222
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HH------Hh-hcCCCeE
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SV------VQ-VDWENGF 288 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~l------a~-~~~~~~~ 288 (592)
...++|+|+|+||+|+...+ .++.. .+ .. .....++
T Consensus 344 --k~~~iPiIVViNKiDl~~~~----------------------------------~e~v~~eL~~~~ll~e~~g~~vpv 387 (742)
T CHL00189 344 --QAANVPIIVAINKIDKANAN----------------------------------TERIKQQLAKYNLIPEKWGGDTPM 387 (742)
T ss_pred --HhcCceEEEEEECCCccccC----------------------------------HHHHHHHHHHhccchHhhCCCceE
Confidence 22478999999999986531 01111 11 11 0123679
Q ss_pred EEcccCCCccHHHHHHHHHHHH
Q psy1524 289 VEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 289 ~EvSAktg~gVeeLf~~Li~~i 310 (592)
+++||++|.||+++|+.++..+
T Consensus 388 v~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 388 IPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEEECCCCCCHHHHHHhhhhhh
Confidence 9999999999999999987764
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=3.5e-15 Score=168.94 Aligned_cols=151 Identities=16% Similarity=0.216 Sum_probs=103.5
Q ss_pred cCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHH
Q psy1524 69 GGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRR 147 (592)
Q Consensus 69 G~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 147 (592)
|++|||||||+|+|++..+ ..++..++.+.....+..++.+ +++|||||+.+....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~--------------------- 57 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTF--------------------- 57 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCcc---------------------
Confidence 8999999999999998766 3556666667777777777755 567999998210000
Q ss_pred hhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE
Q psy1524 148 ALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225 (592)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI 225 (592)
+. + ..+...++ ..+|++++|+|+++.+. ...+..++.+ .++|+
T Consensus 58 -------------------------s~-~--e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~Pi 102 (591)
T TIGR00437 58 -------------------------SL-E--EEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPM 102 (591)
T ss_pred -------------------------ch-H--HHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCE
Confidence 00 0 11223333 47999999999987432 2223333333 37899
Q ss_pred EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHH
Q psy1524 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305 (592)
Q Consensus 226 ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~ 305 (592)
++|+||+|+.++ +.+. .+.+.+.+ ..+.+++++||++|+|++++++.
T Consensus 103 IIVlNK~Dl~~~-------------------------------~~i~-~d~~~L~~-~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 103 ILALNLVDEAEK-------------------------------KGIR-IDEEKLEE-RLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred EEEEehhHHHHh-------------------------------CCCh-hhHHHHHH-HcCCCEEEEECCCCCCHHHHHHH
Confidence 999999998754 2222 23344544 45678999999999999999999
Q ss_pred HHHHH
Q psy1524 306 LLVQA 310 (592)
Q Consensus 306 Li~~i 310 (592)
+.+.+
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98765
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.62 E-value=4.6e-15 Score=167.75 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC---CCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+.|+++|..|+|||||+++|++. .+.+.+..++. +.....+..++ ..+.||||||+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGh------------------ 60 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGH------------------ 60 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCH------------------
Confidence 46999999999999999999963 34444444433 55445566666 66778999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIF 215 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~ 215 (592)
++|......++.++|++|+|+|+++. .+++.+. .+.
T Consensus 61 -------------------------------------e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~ 99 (581)
T TIGR00475 61 -------------------------------------EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD 99 (581)
T ss_pred -------------------------------------HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH
Confidence 77777777788999999999999984 3444332 222
Q ss_pred HhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC---CCeEEEc
Q psy1524 216 ETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW---ENGFVEA 291 (592)
Q Consensus 216 ~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~---~~~~~Ev 291 (592)
. .++| +|+|+||+|+.+... .....++...+.+... ..++++|
T Consensus 100 ~----lgi~~iIVVlNK~Dlv~~~~-----------------------------~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 100 L----LGIPHTIVVITKADRVNEEE-----------------------------IKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred H----cCCCeEEEEEECCCCCCHHH-----------------------------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 2 2567 999999999976411 0011233344433221 4689999
Q ss_pred ccCCCccHHHHHHHHHHHHH
Q psy1524 292 SAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~~i~ 311 (592)
||++|.||+++++.+.+.+.
T Consensus 147 SA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred eCCCCCCchhHHHHHHHHHH
Confidence 99999999999998877663
No 196
>KOG4423|consensus
Probab=99.62 E-value=2.2e-17 Score=156.74 Aligned_cols=173 Identities=24% Similarity=0.382 Sum_probs=142.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCe-EEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGV-HLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~-~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....+|+.|+|+-+||||+++.+++...|...|..|++ |+..+.+..|.. -+.+++||.+|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQ---------------- 85 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQ---------------- 85 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhh----------------
Confidence 46789999999999999999999999999999999998 776666666554 467889999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++|-.|...|++.|.+.++|||+++..+|+....|.+++..
T Consensus 86 ---------------------------------------erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdlds 126 (229)
T KOG4423|consen 86 ---------------------------------------ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDS 126 (229)
T ss_pred ---------------------------------------hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccC
Confidence 88888999999999999999999999999999999998864
Q ss_pred hh---cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 217 TK---ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 217 ~~---~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
-. .....|+|+..||||..... ..-...+...+.+.......+|+||
T Consensus 127 k~qLpng~Pv~~vllankCd~e~~a------------------------------~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 127 KLQLPNGTPVPCVLLANKCDQEKSA------------------------------KNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cccCCCCCcchheeccchhccChHh------------------------------hhhhHHHHHHHHhccCccceeeecc
Confidence 32 34567899999999987641 0111234445555444566899999
Q ss_pred CCCccHHHHHHHHHHHHHHhccc
Q psy1524 294 KDNTNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~~~~ 316 (592)
|.+.|++|+.+.+++.+..+...
T Consensus 177 Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ccccChhHHHHHHHHHHHhhccC
Confidence 99999999999999999877644
No 197
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.61 E-value=1.7e-14 Score=166.70 Aligned_cols=160 Identities=29% Similarity=0.351 Sum_probs=109.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
..+...|+|+|..++|||||+++|....+.....+.+. +.....+.+++ ..++||||||+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGh----------------- 347 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGH----------------- 347 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCC-----------------
Confidence 45778999999999999999999998777654444332 33334455555 45677999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.|..++..++..+|++|+|||+++...-..... +..+
T Consensus 348 --------------------------------------e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~-i~~a--- 385 (787)
T PRK05306 348 --------------------------------------EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA-INHA--- 385 (787)
T ss_pred --------------------------------------ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH-HHHH---
Confidence 7788888888999999999999988532222221 1222
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH--HHHHHHhh-cCCCeEEEcccC
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD--TTESVVQV-DWENGFVEASAK 294 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e--e~~~la~~-~~~~~~~EvSAk 294 (592)
...++|+|||+||+|+...+. ..+..+ +...+... ....+++++||+
T Consensus 386 -~~~~vPiIVviNKiDl~~a~~-----------------------------e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 386 -KAAGVPIIVAINKIDKPGANP-----------------------------DRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred -HhcCCcEEEEEECccccccCH-----------------------------HHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 234789999999999964310 000000 00001111 123679999999
Q ss_pred CCccHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQ 309 (592)
Q Consensus 295 tg~gVeeLf~~Li~~ 309 (592)
+|.||+++|+.|+..
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998764
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=7.9e-15 Score=136.16 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
.|+++|++|||||||+|.++++.+.....++.. ......+..++ .+.+|||+|......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~----------------- 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV----------------- 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc-----------------
Confidence 489999999999999999997666544444443 22222333343 677799999821100
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh---cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS---SADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~---~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
.....+.+..+...++. .++++++|+|.++..+.... ..+..+..
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~--- 108 (170)
T cd01876 61 ----------------------------SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE--- 108 (170)
T ss_pred ----------------------------CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH---
Confidence 00111334444444544 45788999999876433222 12223332
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcCCCeEEEcccCCCcc
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDWENGFVEASAKDNTN 298 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAktg~g 298 (592)
.+.|+++|+||+|+..... ............+ .....+++++||+++.|
T Consensus 109 -~~~~vi~v~nK~D~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 109 -LGIPFLVVLTKADKLKKSE-----------------------------LAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred -cCCCEEEEEEchhcCChHH-----------------------------HHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 2589999999999864411 0111112222222 23456799999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQ 309 (592)
Q Consensus 299 VeeLf~~Li~~ 309 (592)
++++++.|.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 199
>KOG1423|consensus
Probab=99.61 E-value=4.3e-15 Score=151.13 Aligned_cols=232 Identities=20% Similarity=0.213 Sum_probs=137.5
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW 133 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~ 133 (592)
+....+.+.|++||.||||||||.|++++.+.. .....||.......++-+..++.| +||||.-...
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf--~DTPGlvs~~--------- 134 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVF--YDTPGLVSKK--------- 134 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEE--ecCCcccccc---------
Confidence 345578899999999999999999999988765 555667766666666667766655 9999982110
Q ss_pred CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213 (592)
Q Consensus 134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~ 213 (592)
. ..+..+.. .+..-....+..||++++|+|+++....-+.. .+..
T Consensus 135 ---~--~r~~~l~~-----------------------------s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~ 179 (379)
T KOG1423|consen 135 ---M--HRRHHLMM-----------------------------SVLQNPRDAAQNADCVVVVVDASATRTPLHPR-VLHM 179 (379)
T ss_pred ---h--hhhHHHHH-----------------------------HhhhCHHHHHhhCCEEEEEEeccCCcCccChH-HHHH
Confidence 0 00000000 01111233477899999999999744332222 3444
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----------
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---------- 283 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---------- 283 (592)
+.++ .++|-|+|.||+|+....+.+ -.+-+.......+. ...+..+.+....
T Consensus 180 l~~y---s~ips~lvmnkid~~k~k~~L-----------l~l~~~Lt~g~l~~----~kl~v~~~f~~~p~~~~~~~~~g 241 (379)
T KOG1423|consen 180 LEEY---SKIPSILVMNKIDKLKQKRLL-----------LNLKDLLTNGELAK----LKLEVQEKFTDVPSDEKWRTICG 241 (379)
T ss_pred HHHH---hcCCceeeccchhcchhhhHH-----------hhhHHhccccccch----hhhhHHHHhccCCcccccccccC
Confidence 5444 478999999999988652211 11111111111111 0112222222111
Q ss_pred C--CCeEEEcccCCCccHHHHHHHHHHHHHHhcccChhhhhhcccCC---------CCCCCCCCCCCCCCcceeeEEee
Q psy1524 284 W--ENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL---------PPVQHSPNPVPYDTTESVVQVDW 351 (592)
Q Consensus 284 ~--~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~---------~~~~~s~~pVpydta~slas~d~ 351 (592)
| ...+|++||++|+||+++-++++.++.......+..-....... .-.-+-|..|||---..++.++-
T Consensus 242 wshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e 320 (379)
T KOG1423|consen 242 WSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKE 320 (379)
T ss_pred cccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeee
Confidence 2 34589999999999999999999998665444332211111000 00115688899988777775543
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.59 E-value=1.8e-14 Score=162.50 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce----eeeE-EEEE------------eeCCeEEEEEEEeCCCCCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI----EEMH-HEDF------------SMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt----~d~~-~~~v------------~vdg~~v~L~I~DT~G~~~~~ 124 (592)
..-|+|+|.+|+|||||+++|++..+......++ +..+ .... .++.....+.||||||+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~---- 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH---- 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc----
Confidence 4579999999999999999999887764433322 2111 1100 00001113778999999
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP--- 201 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~--- 201 (592)
+.|..++..++..+|++|+|||+++.
T Consensus 80 ---------------------------------------------------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~ 108 (590)
T TIGR00491 80 ---------------------------------------------------EAFTNLRKRGGALADLAILIVDINEGFKP 108 (590)
T ss_pred ---------------------------------------------------HhHHHHHHHHHhhCCEEEEEEECCcCCCH
Confidence 88888998899999999999999974
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
.+++.+. .+.. .++|+|+|+||+|+..
T Consensus 109 qt~e~i~----~l~~----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 109 QTQEALN----ILRM----YKTPFVVAANKIDRIP 135 (590)
T ss_pred hHHHHHH----HHHH----cCCCEEEEEECCCccc
Confidence 4444432 2222 3689999999999974
No 201
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=1.4e-14 Score=142.72 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL 255 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~ 255 (592)
+.|.......+..+|++|+|+|++++.........+..+... ...|+|+|+||+|+..+..
T Consensus 94 ~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~---------------- 154 (203)
T cd01888 94 EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQ---------------- 154 (203)
T ss_pred HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHH----------------
Confidence 666666666678899999999998742111111122222221 2357999999999975310
Q ss_pred CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....++...+... ....+++++||++|.||+++|+.+.+.+
T Consensus 155 -------------~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 -------------ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred -------------HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 00011222333221 1245799999999999999999998765
No 202
>KOG0071|consensus
Probab=99.58 E-value=2.6e-14 Score=130.36 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=121.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..++|+++|-.++||||++..|.-+... ...||++- ....+.+. .+.+++||.+|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGF-nvetVtyk--N~kfNvwdvGGq-------------------- 71 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF-NVETVTYK--NVKFNVWDVGGQ-------------------- 71 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccce-eEEEEEee--eeEEeeeeccCc--------------------
Confidence 3689999999999999999999977654 34667662 22333443 477888999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
++.+.+++.|+.+..++|||+|..+.+..++++.-+..+......
T Consensus 72 -----------------------------------d~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em 116 (180)
T KOG0071|consen 72 -----------------------------------DKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREM 116 (180)
T ss_pred -----------------------------------hhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhh
Confidence 889999999999999999999999988888877766666555556
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCC
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDN 296 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg 296 (592)
.+.|++|.+||.|+.+. .++.++..+..... .--+..+||.+|
T Consensus 117 ~~~~~LvlANkQDlp~A---------------------------------~~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 117 RDAIILILANKQDLPDA---------------------------------MKPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred hcceEEEEecCcccccc---------------------------------cCHHHHHHHhccccccCCccEeeccccccc
Confidence 68899999999999865 23344444333211 122678999999
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.|+.|-|.++...+
T Consensus 164 dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNL 177 (180)
T ss_pred hhHHHHHHHHHhhc
Confidence 99999999998765
No 203
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=3.4e-14 Score=164.81 Aligned_cols=163 Identities=15% Similarity=0.215 Sum_probs=108.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.++|+++|.+|||||||+|+|++... ..++..++.+.....+..++ ..+++|||||..+-...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~------------- 66 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTI------------- 66 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccc-------------
Confidence 357999999999999999999997643 35566666665555555555 45666999998211000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
....+.++ .+...++ ..+|++|+|+|+++.+.- ..+..++.+.
T Consensus 67 ------------------------------~~~~s~~E--~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~ 111 (772)
T PRK09554 67 ------------------------------SSQTSLDE--QIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL 111 (772)
T ss_pred ------------------------------cccccHHH--HHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc
Confidence 00000011 1222333 479999999999886432 2344455443
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
++|+|+|+||+|+.++ +.+. ...+.+.+ ..+++++++||++|.
T Consensus 112 ----giPvIvVlNK~Dl~~~-------------------------------~~i~-id~~~L~~-~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 112 ----GIPCIVALNMLDIAEK-------------------------------QNIR-IDIDALSA-RLGCPVIPLVSTRGR 154 (772)
T ss_pred ----CCCEEEEEEchhhhhc-------------------------------cCcH-HHHHHHHH-HhCCCEEEEEeecCC
Confidence 6899999999998754 2222 23444544 567789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
|++++.+.+.+..
T Consensus 155 GIdeL~~~I~~~~ 167 (772)
T PRK09554 155 GIEALKLAIDRHQ 167 (772)
T ss_pred CHHHHHHHHHHhh
Confidence 9999998887764
No 204
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.58 E-value=4.9e-14 Score=159.86 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----CccCc------ee-eeEEEEEee-----CCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KYKRT------IE-EMHHEDFSM-----NGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~~~T------t~-d~~~~~v~v-----dg~~v~L~I~DT~G~~ 121 (592)
..-+|+|+|..++|||||+.+|+.. .+.. .+..+ .+ ......+.+ ++..+.++||||||+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh- 84 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH- 84 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc-
Confidence 3458999999999999999999853 2211 11110 01 111111111 566789999999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
..|......++..+|++|+|+|+++.
T Consensus 85 ------------------------------------------------------~dF~~~v~~sl~~aD~aILVVDas~g 110 (600)
T PRK05433 85 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDASQG 110 (600)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 67777788889999999999999998
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~ 281 (592)
........|.... . .++|+|+|+||+|+.... .......+..
T Consensus 111 v~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~---------------------------------~~~v~~ei~~ 152 (600)
T PRK05433 111 VEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD---------------------------------PERVKQEIED 152 (600)
T ss_pred CCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc---------------------------------HHHHHHHHHH
Confidence 7766665554432 1 368999999999986431 0111122222
Q ss_pred hc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 282 VD--WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 282 ~~--~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.. ....++++||++|.||+++++.+++.+
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 11 112489999999999999999998876
No 205
>KOG0076|consensus
Probab=99.57 E-value=7e-15 Score=138.58 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=122.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC------CCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN------TFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVL 132 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~------~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~ 132 (592)
...+.|+|+|..|+|||||+.++-.. ... ....+|++ .....+.+++. .+.|||..|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~~~--~l~fwdlgGQ------------ 79 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVCNA--PLSFWDLGGQ------------ 79 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeeccc--eeEEEEcCCh------------
Confidence 34578999999999999999887633 111 23334443 33344556654 4556999999
Q ss_pred cCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524 133 WGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212 (592)
Q Consensus 133 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~ 212 (592)
+..++++..||..|+++|+|+|++|++.|+.....+.
T Consensus 80 -------------------------------------------e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~ 116 (197)
T KOG0076|consen 80 -------------------------------------------ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFE 116 (197)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999988888
Q ss_pred HHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH---HHhh--cCCCe
Q psy1524 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES---VVQV--DWENG 287 (592)
Q Consensus 213 ~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~---la~~--~~~~~ 287 (592)
.+...-.....|+++.+||.|+.+.-. ..+... .+.. ...++
T Consensus 117 ~v~~~E~leg~p~L~lankqd~q~~~~---------------------------------~~El~~~~~~~e~~~~rd~~ 163 (197)
T KOG0076|consen 117 KVVENEKLEGAPVLVLANKQDLQNAME---------------------------------AAELDGVFGLAELIPRRDNP 163 (197)
T ss_pred HHHHHHHhcCCchhhhcchhhhhhhhh---------------------------------HHHHHHHhhhhhhcCCccCc
Confidence 777765667899999999999986511 111111 1111 23567
Q ss_pred EEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 288 FVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 288 ~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
+.+|||.+|+||+|..+++++.+...
T Consensus 164 ~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 164 FQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccchhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999999998544
No 206
>KOG1707|consensus
Probab=99.57 E-value=7.9e-15 Score=159.70 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=114.5
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....++|+++|+.||||||||..++.+.|++..++-... +.--..+....+...|+||+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPadvtPe~vpt~ivD~ss~----------------- 66 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPADVTPENVPTSIVDTSSD----------------- 66 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCccCcCcCceEEEecccc-----------------
Confidence 3466799999999999999999999999998765444332 1111233333344667999755
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.-+.....-++.||++++||+++++++.+.+...|..+.+.
T Consensus 67 --------------------------------------~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~ 108 (625)
T KOG1707|consen 67 --------------------------------------SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQ 108 (625)
T ss_pred --------------------------------------cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhc
Confidence 111222234588999999999999999999998855555554
Q ss_pred hc--CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh-hcCCCeEEEccc
Q psy1524 218 KA--STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ-VDWENGFVEASA 293 (592)
Q Consensus 218 ~~--~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~-~~~~~~~~EvSA 293 (592)
.. ..++||||||||+|+...+ ..+.+. ...+.. ......+|+|||
T Consensus 109 ~~~~~~~~PVILvGNK~d~~~~~-------------------------------~~s~e~~~~pim~~f~EiEtciecSA 157 (625)
T KOG1707|consen 109 LFGDYHETPVILVGNKSDNGDNE-------------------------------NNSDEVNTLPIMIAFAEIETCIECSA 157 (625)
T ss_pred ccCCCccCCEEEEeeccCCcccc-------------------------------ccchhHHHHHHHHHhHHHHHHHhhhh
Confidence 33 2578999999999998762 111122 222222 122335899999
Q ss_pred CCCccHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQA 310 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i 310 (592)
++-.|+.|+|...-+.+
T Consensus 158 ~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 158 LTLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhhHhhhhhhhhee
Confidence 99999999998776665
No 207
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=1.7e-13 Score=133.13 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=105.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CC-----------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SP-----------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~-----------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
..++|+++|..++|||||+.+|+...- .. .....+.+.....+..+.....++|+||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~- 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH- 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence 457999999999999999999994321 11 0001111223333331233456677999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
..|.......+..+|++|+|+|+.+.
T Consensus 81 ------------------------------------------------------~~f~~~~~~~~~~~D~ailvVda~~g 106 (188)
T PF00009_consen 81 ------------------------------------------------------EDFIKEMIRGLRQADIAILVVDANDG 106 (188)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTTSSEEEEEEETTTB
T ss_pred ------------------------------------------------------cceeecccceecccccceeeeecccc
Confidence 66777777778999999999999877
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HHH
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVV 280 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~la 280 (592)
.... ....+..+.. .++|+|+|.||+|+..... .. ..++.. .+.
T Consensus 107 ~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~-----------------------------~~-~~~~~~~~l~ 151 (188)
T PF00009_consen 107 IQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKEL-----------------------------EE-IIEEIKEKLL 151 (188)
T ss_dssp STHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHH-----------------------------HH-HHHHHHHHHH
T ss_pred cccc-cccccccccc----cccceEEeeeeccchhhhH-----------------------------HH-HHHHHHHHhc
Confidence 5433 3334444433 3789999999999984310 00 011222 232
Q ss_pred hhc-----CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 281 QVD-----WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 281 ~~~-----~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
+.. ...+++++||++|.|+++|++.+.+.+
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 211 135799999999999999999998865
No 208
>KOG1191|consensus
Probab=99.53 E-value=8.9e-14 Score=149.27 Aligned_cols=177 Identities=23% Similarity=0.266 Sum_probs=124.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..++|+|+|.||||||||+|.|.+... +.....||.|.....++++|.++.| .||+|.++ ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L--~DTAGiRe------------~~~~ 332 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRL--SDTAGIRE------------ESND 332 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEE--Eecccccc------------ccCC
Confidence 348999999999999999999997754 5788899999999999999977776 99999943 2334
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC--CCcCCHHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI--DDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv--sd~~Sfe~l~~~l~~L~~ 216 (592)
..|.+++.++... +..||++++|+|+ ++-++-..+...+.....
T Consensus 333 ~iE~~gI~rA~k~----------------------------------~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~ 378 (531)
T KOG1191|consen 333 GIEALGIERARKR----------------------------------IERADVILLVVDAEESDTESDLKIARILETEGV 378 (531)
T ss_pred hhHHHhHHHHHHH----------------------------------HhhcCEEEEEecccccccccchHHHHHHHHhcc
Confidence 5777777776553 7889999999999 555544444444443332
Q ss_pred hh-----cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEc
Q psy1524 217 TK-----ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291 (592)
Q Consensus 217 ~~-----~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~Ev 291 (592)
-. ...+.|++++.||+|+..+-.+.. .. .+-+..+ ... .......++
T Consensus 379 g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~---~~----------------------~~~~~~~--~~~-~~~~i~~~v 430 (531)
T KOG1191|consen 379 GLVVIVNKMEKQRIILVANKSDLVSKIPEMT---KI----------------------PVVYPSA--EGR-SVFPIVVEV 430 (531)
T ss_pred ceEEEeccccccceEEEechhhccCcccccc---CC----------------------ceecccc--ccC-cccceEEEe
Confidence 11 124579999999999987621100 00 0000111 001 112236679
Q ss_pred ccCCCccHHHHHHHHHHHHHHh
Q psy1524 292 SAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~~i~~~ 313 (592)
|+++++|+++|...+.+.+...
T Consensus 431 s~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 431 SCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred eechhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999888443
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.52 E-value=2.3e-13 Score=153.90 Aligned_cols=113 Identities=27% Similarity=0.358 Sum_probs=78.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC----ceeee-EEEEEe--eCCeEE----------EEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR----TIEEM-HHEDFS--MNGVHL----------KLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~----Tt~d~-~~~~v~--vdg~~v----------~L~I~DT~G~~~ 122 (592)
.+...|+|+|..|+|||||+++|.+..+...... +++.. ...... ..+..+ .+.||||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~-- 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH-- 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh--
Confidence 4556899999999999999999987655433332 22211 110000 001111 1578999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC--
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD-- 200 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd-- 200 (592)
+.|..++...+..+|++|+|+|+++
T Consensus 82 -----------------------------------------------------e~f~~~~~~~~~~aD~~IlVvDa~~g~ 108 (586)
T PRK04004 82 -----------------------------------------------------EAFTNLRKRGGALADIAILVVDINEGF 108 (586)
T ss_pred -----------------------------------------------------HHHHHHHHHhHhhCCEEEEEEECCCCC
Confidence 7888888888899999999999997
Q ss_pred -cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 201 -PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 201 -~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
+.+++.+.. +.. .++|+++|+||+|+.
T Consensus 109 ~~qt~e~i~~----~~~----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 109 QPQTIEAINI----LKR----RKTPFVVAANKIDRI 136 (586)
T ss_pred CHhHHHHHHH----HHH----cCCCEEEEEECcCCc
Confidence 555555432 222 378999999999986
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=7.4e-13 Score=126.47 Aligned_cols=159 Identities=20% Similarity=0.318 Sum_probs=119.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--------CCccC---ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--------PKYKR---TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGL 126 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--------~~~~~---Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~ 126 (592)
......||+|+|+-++||||++.+++..... ..+.. |+.-.....+.+++ ...+.++|||||
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq------ 78 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQ------ 78 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCc------
Confidence 4567789999999999999999999966431 12222 33322333334444 133455999999
Q ss_pred cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524 127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE 206 (592)
Q Consensus 127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~ 206 (592)
++|..|+..+.++++++|+++|.+.+..| +
T Consensus 79 -------------------------------------------------~RF~fm~~~l~~ga~gaivlVDss~~~~~-~ 108 (187)
T COG2229 79 -------------------------------------------------ERFKFMWEILSRGAVGAIVLVDSSRPITF-H 108 (187)
T ss_pred -------------------------------------------------HHHHHHHHHHhCCcceEEEEEecCCCcch-H
Confidence 99999999999999999999999999998 5
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CC
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WE 285 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~ 285 (592)
....++.+... ..+|++|++||.||.+. .+.++..++.+.. ..
T Consensus 109 a~~ii~f~~~~---~~ip~vVa~NK~DL~~a---------------------------------~ppe~i~e~l~~~~~~ 152 (187)
T COG2229 109 AEEIIDFLTSR---NPIPVVVAINKQDLFDA---------------------------------LPPEKIREALKLELLS 152 (187)
T ss_pred HHHHHHHHhhc---cCCCEEEEeeccccCCC---------------------------------CCHHHHHHHHHhccCC
Confidence 55455544332 12999999999999865 3556677766655 37
Q ss_pred CeEEEcccCCCccHHHHHHHHHHH
Q psy1524 286 NGFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 286 ~~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
.+.++++|..++++.+.++.+...
T Consensus 153 ~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 153 VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CceeeeecccchhHHHHHHHHHhh
Confidence 889999999999999998887765
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.50 E-value=1.3e-13 Score=150.83 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=100.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------------------------------KYKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------------------------------~~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..++|||||+++|+. +.+.. .....+.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 5668999999999999999999985 22221 011222244444444444
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
+.++||||||+ ++|.......+.
T Consensus 85 --~~i~iiDtpGh-------------------------------------------------------~~f~~~~~~~~~ 107 (426)
T TIGR00483 85 --YEVTIVDCPGH-------------------------------------------------------RDFIKNMITGAS 107 (426)
T ss_pred --eEEEEEECCCH-------------------------------------------------------HHHHHHHHhhhh
Confidence 56778999999 555554455678
Q ss_pred cCCcEEEEEeCCCcCCHHHHHHH-HHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524 188 SADAFILVYAIDDPNSFEEIRLI-RDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG 266 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l~~~-l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 266 (592)
.+|++|+|+|+++.+++.....+ +..+... ....|+|+|+||+|+.+..+..
T Consensus 108 ~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~------------------------- 160 (426)
T TIGR00483 108 QADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEE------------------------- 160 (426)
T ss_pred hCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHH-------------------------
Confidence 89999999999988654222111 1112222 1235799999999997421000
Q ss_pred CCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524 267 TPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK 304 (592)
Q Consensus 267 ~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~ 304 (592)
.....++...+++... ..++++|||++|.||++++.
T Consensus 161 --~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 161 --FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred --HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 0011234444444322 36799999999999998654
No 212
>KOG1489|consensus
Probab=99.50 E-value=1.6e-13 Score=140.44 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
..|.+||.||+|||||+|.++..+ -+..|..||......++..++... +.+-|.||.-++...+.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGl----------- 264 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGL----------- 264 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcc-----------
Confidence 356799999999999999999664 357888888765555555555432 6679999983322111111
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhh
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFETK 218 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~ 218 (592)
. ..| -..+++|+++++|+|++.. .-++.++.++.++..+.
T Consensus 265 -------------G--------------------~~F----LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye 307 (366)
T KOG1489|consen 265 -------------G--------------------YKF----LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE 307 (366)
T ss_pred -------------c--------------------HHH----HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh
Confidence 0 011 1136789999999999998 78888888888876553
Q ss_pred -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.-.+.|.++|+||+|+.+.. .+...++++......++++||++++
T Consensus 308 k~L~~rp~liVaNKiD~~eae----------------------------------~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 308 KGLADRPALIVANKIDLPEAE----------------------------------KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred hhhccCceEEEEeccCchhHH----------------------------------HHHHHHHHHHcCCCcEEEeeecccc
Confidence 23578999999999996541 1123455554444458999999999
Q ss_pred cHHHHHHHHHH
Q psy1524 298 NITQVFKELLV 308 (592)
Q Consensus 298 gVeeLf~~Li~ 308 (592)
|+++++..|-+
T Consensus 354 gl~~ll~~lr~ 364 (366)
T KOG1489|consen 354 GLEELLNGLRE 364 (366)
T ss_pred chHHHHHHHhh
Confidence 99999887643
No 213
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.49 E-value=1.7e-13 Score=135.46 Aligned_cols=151 Identities=23% Similarity=0.192 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCCeEEE
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNGVHLK 111 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg~~v~ 111 (592)
+|+|+|.+|+|||||+++|+.. .... ....++.+.....+..++. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence 5899999999999999999843 1110 0012222333333444554 4
Q ss_pred EEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCc
Q psy1524 112 LDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADA 191 (592)
Q Consensus 112 L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~ 191 (592)
+.||||||+ ++|.......+..+|+
T Consensus 79 ~~liDTpG~-------------------------------------------------------~~~~~~~~~~~~~ad~ 103 (208)
T cd04166 79 FIIADTPGH-------------------------------------------------------EQYTRNMVTGASTADL 103 (208)
T ss_pred EEEEECCcH-------------------------------------------------------HHHHHHHHHhhhhCCE
Confidence 556999998 5554444456789999
Q ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCC
Q psy1524 192 FILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271 (592)
Q Consensus 192 iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~V 271 (592)
+|+|+|+++...- .....+..+... ...++|+|+||+|+....... ...
T Consensus 104 ~llVvD~~~~~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~---------------------------~~~ 152 (208)
T cd04166 104 AILLVDARKGVLE-QTRRHSYILSLL---GIRHVVVAVNKMDLVDYSEEV---------------------------FEE 152 (208)
T ss_pred EEEEEECCCCccH-hHHHHHHHHHHc---CCCcEEEEEEchhcccCCHHH---------------------------HHH
Confidence 9999999876422 222222222221 224688899999986431000 000
Q ss_pred ChHHHHHHHhhcC--CCeEEEcccCCCccHHHH
Q psy1524 272 PYDTTESVVQVDW--ENGFVEASAKDNTNITQV 302 (592)
Q Consensus 272 s~ee~~~la~~~~--~~~~~EvSAktg~gVeeL 302 (592)
...+...+.+... ..++++|||++|.||++.
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1122333333222 245899999999999854
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=2.2e-13 Score=135.13 Aligned_cols=112 Identities=22% Similarity=0.309 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-----------ccCce------e-e--eEEEEEee---CCeEEEEEEEeCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPK-----------YKRTI------E-E--MHHEDFSM---NGVHLKLDILDTSGE 120 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~-----------~~~Tt------~-d--~~~~~v~v---dg~~v~L~I~DT~G~ 120 (592)
+|+|+|..++|||||+++|+....... +..+. + . .....+.. ++..+.++||||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999996543321 01110 0 0 11111111 456788999999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
++|......++..+|++|+|+|+++
T Consensus 82 -------------------------------------------------------~~f~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 82 -------------------------------------------------------VNFMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred -------------------------------------------------------cchHHHHHHHHHhCCEEEEEEECCC
Confidence 6676777778999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
..++.. ..++..+.. .+.|+++|+||+|+.
T Consensus 107 ~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 107 GVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 877643 333343322 358999999999986
No 215
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.48 E-value=2.3e-13 Score=147.97 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=65.2
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL 255 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~ 255 (592)
++|..........+|++|+|+|+++..........+..+... ...|+|+|+||+|+.+...
T Consensus 91 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~---------------- 151 (406)
T TIGR03680 91 ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEK---------------- 151 (406)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHH----------------
Confidence 677766666778899999999998643111222222222221 2357999999999975411
Q ss_pred CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....++...+.+. ....+++++||++|.|++++++.|...+
T Consensus 152 -------------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 152 -------------ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred -------------HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 00112223333221 1256799999999999999999998765
No 216
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.48 E-value=3.1e-13 Score=147.77 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=95.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..++|||||+++|+.. .... ....++.+.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45699999999999999999999832 1111 122333344444444444
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
+.+.||||||+ +.|.......+.
T Consensus 84 --~~i~liDtpG~-------------------------------------------------------~~~~~~~~~~~~ 106 (425)
T PRK12317 84 --YYFTIVDCPGH-------------------------------------------------------RDFVKNMITGAS 106 (425)
T ss_pred --eEEEEEECCCc-------------------------------------------------------ccchhhHhhchh
Confidence 56777999998 444333333467
Q ss_pred cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT 267 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (592)
.+|++|+|+|+++...+.....++..+... ....|+|+|+||+|+...+...
T Consensus 107 ~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~-------------------------- 158 (425)
T PRK12317 107 QADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKR-------------------------- 158 (425)
T ss_pred cCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHH--------------------------
Confidence 899999999998732222222222222222 1234799999999997521000
Q ss_pred CCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524 268 PDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK 304 (592)
Q Consensus 268 ~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~ 304 (592)
-....++...+++... ..++++|||++|.||+++++
T Consensus 159 -~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 159 -YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred -HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 0011233333333221 35799999999999998653
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.46 E-value=8.5e-13 Score=122.92 Aligned_cols=140 Identities=18% Similarity=0.240 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||+|||..|||||||+++|.+....-....++ .+ .-.++||||.- +|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i--------~~-----~~~~IDTPGEy------------------iE~- 50 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI--------EY-----YDNTIDTPGEY------------------IEN- 50 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCcccee--------Ee-----cccEEECChhh------------------eeC-
Confidence 89999999999999999999765532222222 11 12349999970 000
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
..|....-....+||+|++|.|++++.+.-- ..+. .....
T Consensus 51 --------------------------------~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa---~~f~~ 90 (143)
T PF10662_consen 51 --------------------------------PRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFA---SMFNK 90 (143)
T ss_pred --------------------------------HHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhh---cccCC
Confidence 1122222233558999999999998754211 0011 12368
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|-|.||+|+..+. ...+.+.++.+.......|++||.+|+||++|.
T Consensus 91 pvIGVITK~Dl~~~~--------------------------------~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 91 PVIGVITKIDLPSDD--------------------------------ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEECccCccch--------------------------------hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence 999999999998431 234666677666665568999999999999999
Q ss_pred HHHH
Q psy1524 304 KELL 307 (592)
Q Consensus 304 ~~Li 307 (592)
+.|-
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 8763
No 218
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.45 E-value=1.3e-12 Score=132.13 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CC----CccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTF--SP----KYKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQSGKGL 126 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f--~~----~~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~~~~~~ 126 (592)
+|+++|..|+|||||+++|+...- .. ....+..| .......+....+.++||||||+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~------ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH------ 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc------
Confidence 489999999999999999985311 00 00001111 11222233334467788999999
Q ss_pred cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524 127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE 206 (592)
Q Consensus 127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~ 206 (592)
..|......+++.+|++|+|+|+++.... .
T Consensus 75 -------------------------------------------------~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~ 104 (237)
T cd04168 75 -------------------------------------------------MDFIAEVERSLSVLDGAILVISAVEGVQA-Q 104 (237)
T ss_pred -------------------------------------------------cchHHHHHHHHHHhCeEEEEEeCCCCCCH-H
Confidence 56666777789999999999999987653 3
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC------CCC---ccc-----cccC----C---
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG------LPD---SVC-----AHQI----S--- 265 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~------~~~---~~~-----~~~~----~--- 265 (592)
...++..+.. .++|+++|+||+|+...+.. ..-..+...++. +|. ... +... .
T Consensus 105 ~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~--~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~d 178 (237)
T cd04168 105 TRILWRLLRK----LNIPTIIFVNKIDRAGADLE--KVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGD 178 (237)
T ss_pred HHHHHHHHHH----cCCCEEEEEECccccCCCHH--HHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCC
Confidence 4445554543 36899999999999753210 000011111110 000 000 0000 0
Q ss_pred -------CCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 266 -------GTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 266 -------~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
-....++.++...-.+ ...-.|++..||.++.||..|++.+++.+
T Consensus 179 d~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 179 DELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 0022455444443222 13345788889999999999999998765
No 219
>KOG0074|consensus
Probab=99.45 E-value=3.5e-13 Score=123.15 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=118.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+.+||+++|-.|+|||||+.+|...... ...||-+ +..+.+..++ .+.+++||.+|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G-Fn~k~v~~~g-~f~LnvwDiGGq------------------- 72 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG-FNTKKVEYDG-TFHLNVWDIGGQ------------------- 72 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC-cceEEEeecC-cEEEEEEecCCc-------------------
Confidence 67899999999999999999999876543 2344444 3445555555 477888999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
...+..+..||.+.|++|+|+|.+|...|+++...+-+|.+-..
T Consensus 73 ------------------------------------r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK 116 (185)
T KOG0074|consen 73 ------------------------------------RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK 116 (185)
T ss_pred ------------------------------------cccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh
Confidence 56778899999999999999999999999999887777766544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---cCCCeEEEcccCCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---DWENGFVEASAKDN 296 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~~~~~~~EvSAktg 296 (592)
-..+|+++-.||.|+...- ...+.+..+.-. .....+-+|||.++
T Consensus 117 l~~vpvlIfankQdlltaa--------------------------------~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 117 LAEVPVLIFANKQDLLTAA--------------------------------KVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred hhccceeehhhhhHHHhhc--------------------------------chHHHHHhcchhhhhhceEEeeeCccccc
Confidence 5678999999999987641 011122211100 11223668999999
Q ss_pred ccHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQ 309 (592)
Q Consensus 297 ~gVeeLf~~Li~~ 309 (592)
+|+.+-.+++...
T Consensus 165 eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 165 EGSTDGSDWVQSN 177 (185)
T ss_pred cCccCcchhhhcC
Confidence 9999888877654
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=99.45 E-value=1.6e-12 Score=147.28 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc--CCCCCCcc------------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY--NTFSPKYK------------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKG 125 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~------------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~ 125 (592)
..-+|+|+|..++|||||+++|+. +.|...+. .+.+ ........++...+.++||||||+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~----- 78 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH----- 78 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCc-----
Confidence 346999999999999999999996 44443221 1122 223333444555678888999999
Q ss_pred ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524 126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE 205 (592)
Q Consensus 126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe 205 (592)
..|......+++.+|++|+|+|+++....
T Consensus 79 --------------------------------------------------~df~~~v~~~l~~aDg~ILVVDa~~G~~~- 107 (607)
T PRK10218 79 --------------------------------------------------ADFGGEVERVMSMVDSVLLVVDAFDGPMP- 107 (607)
T ss_pred --------------------------------------------------chhHHHHHHHHHhCCEEEEEEecccCccH-
Confidence 67777888899999999999999876432
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----
Q psy1524 206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ---- 281 (592)
Q Consensus 206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~---- 281 (592)
....++..+.. .++|+|+|+||+|+...... .+ .++...+..
T Consensus 108 qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~-----------------------------~v-l~ei~~l~~~l~~ 153 (607)
T PRK10218 108 QTRFVTKKAFA----YGLKPIVVINKVDRPGARPD-----------------------------WV-VDQVFDLFVNLDA 153 (607)
T ss_pred HHHHHHHHHHH----cCCCEEEEEECcCCCCCchh-----------------------------HH-HHHHHHHHhccCc
Confidence 23334444433 36899999999998754110 00 111111110
Q ss_pred --hcCCCeEEEcccCCCc----------cHHHHHHHHHHHH
Q psy1524 282 --VDWENGFVEASAKDNT----------NITQVFKELLVQA 310 (592)
Q Consensus 282 --~~~~~~~~EvSAktg~----------gVeeLf~~Li~~i 310 (592)
.....+++.+||++|. |+..+|+.++..+
T Consensus 154 ~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 154 TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 1134679999999998 5888888887776
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=9.2e-13 Score=149.21 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCCccC------------cee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY--NTFSPKYKR------------TIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKC 128 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~--~~f~~~~~~------------Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~ 128 (592)
+|+|+|..++|||||+++|+. +.+...... ..+ ....+...++...+.++||||||+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh-------- 74 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH-------- 74 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH--------
Confidence 799999999999999999995 344321100 001 122222333334477888999999
Q ss_pred cccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH
Q psy1524 129 GAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR 208 (592)
Q Consensus 129 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~ 208 (592)
..|......+++.+|++|+|+|+++.. .....
T Consensus 75 -----------------------------------------------~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~ 106 (594)
T TIGR01394 75 -----------------------------------------------ADFGGEVERVLGMVDGVLLLVDASEGP-MPQTR 106 (594)
T ss_pred -----------------------------------------------HHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHH
Confidence 777777788899999999999998743 44555
Q ss_pred HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh------h
Q psy1524 209 LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ------V 282 (592)
Q Consensus 209 ~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~------~ 282 (592)
.++..+.. .++|+|+|+||+|+..... ..+ .++...+.. .
T Consensus 107 ~~l~~a~~----~~ip~IVviNKiD~~~a~~-----------------------------~~v-~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 107 FVLKKALE----LGLKPIVVINKIDRPSARP-----------------------------DEV-VDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHHHH----CCCCEEEEEECCCCCCcCH-----------------------------HHH-HHHHHHHHHhhccccc
Confidence 66666554 3689999999999865310 001 111111111 1
Q ss_pred cCCCeEEEcccCCCc----------cHHHHHHHHHHHHH
Q psy1524 283 DWENGFVEASAKDNT----------NITQVFKELLVQAK 311 (592)
Q Consensus 283 ~~~~~~~EvSAktg~----------gVeeLf~~Li~~i~ 311 (592)
...++++.+||++|. |++.+|+.+++.+.
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 234679999999996 79999999988773
No 222
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.45 E-value=7.6e-13 Score=144.15 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=99.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------Cceee-----------------eEEEEEeeC--C----e
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIEE-----------------MHHEDFSMN--G----V 108 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~d-----------------~~~~~v~vd--g----~ 108 (592)
.+...++|+++|..++|||||+.+|.+. +.+... -|+.- .+.....++ + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3456799999999999999999999643 111111 11110 011111111 1 1
Q ss_pred EEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc
Q psy1524 109 HLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS 188 (592)
Q Consensus 109 ~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 188 (592)
...++||||||+ ++|..........
T Consensus 84 ~~~i~liDtPG~-------------------------------------------------------~~f~~~~~~~~~~ 108 (411)
T PRK04000 84 LRRVSFVDAPGH-------------------------------------------------------ETLMATMLSGAAL 108 (411)
T ss_pred ccEEEEEECCCH-------------------------------------------------------HHHHHHHHHHHhh
Confidence 256788999998 5555444444566
Q ss_pred CCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524 189 ADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT 267 (592)
Q Consensus 189 AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (592)
+|++|+|+|++++. .-... ..+..+... ...|+++|+||+|+.+...
T Consensus 109 ~D~~llVVDa~~~~~~~~t~-~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~---------------------------- 156 (411)
T PRK04000 109 MDGAILVIAANEPCPQPQTK-EHLMALDII---GIKNIVIVQNKIDLVSKER---------------------------- 156 (411)
T ss_pred CCEEEEEEECCCCCCChhHH-HHHHHHHHc---CCCcEEEEEEeeccccchh----------------------------
Confidence 89999999999653 22211 122222221 2347999999999975411
Q ss_pred CCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 268 PDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 268 ~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....++...+++. ....+++++||++|.|++++++.|...+
T Consensus 157 -~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 157 -ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred -HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 00012233333321 1246799999999999999999987765
No 223
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=3.7e-12 Score=131.54 Aligned_cols=173 Identities=25% Similarity=0.286 Sum_probs=119.6
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
+........|+|.|+||||||||++.+++.+. +..|+.||...+...+..++ ..+|++||||.-+.+.
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl--------- 230 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPL--------- 230 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCCh---------
Confidence 34455778999999999999999999997754 47899999877777666666 4566699999822111
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc--CCHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP--NSFEEIRLIRD 212 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~--~Sfe~l~~~l~ 212 (592)
.+.+. -+..++... -.-+++|+|+||.+.. -+.+....++.
T Consensus 231 --------------------~ErN~----------------IE~qAi~AL-~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~ 273 (346)
T COG1084 231 --------------------EERNE----------------IERQAILAL-RHLAGVILFLFDPSETCGYSLEEQISLLE 273 (346)
T ss_pred --------------------HHhcH----------------HHHHHHHHH-HHhcCeEEEEEcCccccCCCHHHHHHHHH
Confidence 11000 111222222 1236899999999764 57788888888
Q ss_pred HHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292 (592)
Q Consensus 213 ~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS 292 (592)
++.... +.|+|+|.||+|+.+.+ ..+++..............+|
T Consensus 274 eIk~~f---~~p~v~V~nK~D~~~~e---------------------------------~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 274 EIKELF---KAPIVVVINKIDIADEE---------------------------------KLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHhc---CCCeEEEEecccccchh---------------------------------HHHHHHHHHHhhcccccccee
Confidence 888763 48999999999988541 123333333334455567889
Q ss_pred cCCCccHHHHHHHHHHHHHH
Q psy1524 293 AKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~~ 312 (592)
+..+.+++.+-+.+...+.+
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeehhhHHHHHHHHHHHhhc
Confidence 99999999888888777543
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.3e-12 Score=145.99 Aligned_cols=160 Identities=15% Similarity=0.237 Sum_probs=114.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC-CCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+|+++|.||||||||+|++++. ..+.++...|-+.....+...+..+. ++|.||. ++....-.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~--ivDLPG~------------YSL~~~S~ 68 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIE--IVDLPGT------------YSLTAYSE 68 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEE--EEeCCCc------------CCCCCCCc
Confidence 457999999999999999999965 55688998888888888888887655 5999998 11111100
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
|+ .+.+.|+ .+.|++|.|.|++|-+.--.+. -++.+.
T Consensus 69 -----------------------------------DE--~Var~~ll~~~~D~ivnVvDAtnLeRnLylt---lQLlE~- 107 (653)
T COG0370 69 -----------------------------------DE--KVARDFLLEGKPDLIVNVVDATNLERNLYLT---LQLLEL- 107 (653)
T ss_pred -----------------------------------hH--HHHHHHHhcCCCCEEEEEcccchHHHHHHHH---HHHHHc-
Confidence 11 2333333 3579999999999876322222 234443
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
+.|+|++.|++|.... +.+.. +.+.+.+ ..+++++++||++|.|
T Consensus 108 ---g~p~ilaLNm~D~A~~-------------------------------~Gi~I-D~~~L~~-~LGvPVv~tvA~~g~G 151 (653)
T COG0370 108 ---GIPMILALNMIDEAKK-------------------------------RGIRI-DIEKLSK-LLGVPVVPTVAKRGEG 151 (653)
T ss_pred ---CCCeEEEeccHhhHHh-------------------------------cCCcc-cHHHHHH-HhCCCEEEEEeecCCC
Confidence 7899999999999876 22221 1233333 6789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
++++.+.+++....
T Consensus 152 ~~~l~~~i~~~~~~ 165 (653)
T COG0370 152 LEELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876643
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.43 E-value=2.4e-12 Score=129.23 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=61.1
Q ss_pred cchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524 176 NEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS 253 (592)
Q Consensus 176 e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~ 253 (592)
++|.......+ ..+|++++|+|++.... .....++..+.. .++|+++|.||+|+.+... .......+...+.
T Consensus 95 ~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~-~~~~~~~l~~~L~ 168 (224)
T cd04165 95 ERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI-LQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH-HHHHHHHHHHHhc
Confidence 55543333333 36899999999987654 222334444433 3689999999999865421 1111111111111
Q ss_pred CCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524 254 GLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELL 307 (592)
Q Consensus 254 ~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li 307 (592)
...-...+- ...+.+++...+ ......++|.+||.+|+|+++|...|.
T Consensus 169 ~~g~~~~p~------~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 169 VPGVRKLPV------PVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred CCCccccce------eeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 000000000 000001111111 112345899999999999999987664
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4.4e-12 Score=123.46 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=105.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+...-|+++|.+|||||||||+|++..-......|.+ ......+.+++. +.|+|.||.+-....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~------------ 86 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVP------------ 86 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCC------------
Confidence 3557999999999999999999998653212222222 223334455554 566999998321110
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
+ ...+.+..+...|+.. -.++++++|+...-.-.+. .+++.+.
T Consensus 87 --------k-------------------------~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~ 132 (200)
T COG0218 87 --------K-------------------------EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL 132 (200)
T ss_pred --------H-------------------------HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH
Confidence 0 0115666677777653 5678889998766544333 3444444
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe--EEEccc
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASA 293 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~--~~EvSA 293 (592)
+ .++|+++|+||+|....... .-................ ++.+|+
T Consensus 133 ~----~~i~~~vv~tK~DKi~~~~~-----------------------------~k~l~~v~~~l~~~~~~~~~~~~~ss 179 (200)
T COG0218 133 E----LGIPVIVVLTKADKLKKSER-----------------------------NKQLNKVAEELKKPPPDDQWVVLFSS 179 (200)
T ss_pred H----cCCCeEEEEEccccCChhHH-----------------------------HHHHHHHHHHhcCCCCccceEEEEec
Confidence 4 48999999999999875211 000111111111122222 788899
Q ss_pred CCCccHHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQAK 311 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~ 311 (592)
.++.|++++...|.+.+.
T Consensus 180 ~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 180 LKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 999999999998887763
No 227
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.42 E-value=2.2e-12 Score=146.83 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC---CCCCCcc-CceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN---TFSPKYK-RTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~---~f~~~~~-~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
-|+++|..++|||||+++|++. .+.+... ..+-+.....+.. ++. .+.||||||+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGh------------------ 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGH------------------ 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCH------------------
Confidence 5899999999999999999953 3333322 2222322222322 343 3677999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|.......+..+|++++|+|+++...- .....+..+..
T Consensus 62 -------------------------------------e~fi~~m~~g~~~~D~~lLVVda~eg~~~-qT~ehl~il~~-- 101 (614)
T PRK10512 62 -------------------------------------EKFLSNMLAGVGGIDHALLVVACDDGVMA-QTREHLAILQL-- 101 (614)
T ss_pred -------------------------------------HHHHHHHHHHhhcCCEEEEEEECCCCCcH-HHHHHHHHHHH--
Confidence 77766666678899999999999874221 11122222222
Q ss_pred cCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCC
Q psy1524 219 ASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKD 295 (592)
Q Consensus 219 ~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAkt 295 (592)
.++| +|||+||+|+.++.. . ....++...+.... ...++++|||++
T Consensus 102 --lgi~~iIVVlNKiDlv~~~~-~----------------------------~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 102 --TGNPMLTVALTKADRVDEAR-I----------------------------AEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred --cCCCeEEEEEECCccCCHHH-H----------------------------HHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 1345 689999999975411 0 00122333333222 136799999999
Q ss_pred CccHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQA 310 (592)
Q Consensus 296 g~gVeeLf~~Li~~i 310 (592)
|.|++++++.|....
T Consensus 151 G~gI~~L~~~L~~~~ 165 (614)
T PRK10512 151 GRGIDALREHLLQLP 165 (614)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999987654
No 228
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.42 E-value=4.7e-12 Score=133.35 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=39.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEe---------------------eCC-eEEEEEEEeCCCC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFS---------------------MNG-VHLKLDILDTSGE 120 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~---------------------vdg-~~v~L~I~DT~G~ 120 (592)
|+|+|.+|||||||+|+|++..+. .+|..|+.+....... +++ ..+.++||||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 589999999999999999987653 4555555433222222 233 3467899999998
No 229
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=6.6e-12 Score=123.44 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=71.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC------------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF------------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f------------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~ 124 (592)
.++|+++|..++|||||+++|+.... . +....++.+.....+..++ ..+.|+||||+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~---- 75 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGH---- 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCH----
Confidence 47999999999999999999985310 0 0011122222222233344 45567999998
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
..|.......+..+|++++|+|++....-
T Consensus 76 ---------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~ 104 (195)
T cd01884 76 ---------------------------------------------------ADYIKNMITGAAQMDGAILVVSATDGPMP 104 (195)
T ss_pred ---------------------------------------------------HHHHHHHHHHhhhCCEEEEEEECCCCCcH
Confidence 44544445567889999999999865332
Q ss_pred HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524 205 EEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD 236 (592)
Q Consensus 205 e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~ 236 (592)
.....+..+.. .++| +|+|.||+|+..
T Consensus 105 -~~~~~~~~~~~----~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 105 -QTREHLLLARQ----VGVPYIVVFLNKADMVD 132 (195)
T ss_pred -HHHHHHHHHHH----cCCCcEEEEEeCCCCCC
Confidence 22233333433 2566 889999999864
No 230
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=3.6e-12 Score=125.08 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee--eE--EEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE--MH--HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d--~~--~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+||+|+|.+|||||||+|.|++..+......++.. .. ...+... ....+.+|||+|.......
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~----------- 68 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFP----------- 68 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCC-----------
Confidence 379999999999999999999986554322222220 00 0011111 1225677999998211000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~ 216 (592)
.+.| +....+.++|++++|.| .+|.... .++..+..
T Consensus 69 -------------------------------------~~~~--l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~ 105 (197)
T cd04104 69 -------------------------------------PDDY--LEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQC 105 (197)
T ss_pred -------------------------------------HHHH--HHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHH
Confidence 0112 22233567899888743 2233333 34555544
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH----hh--cCCCeEEE
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV----QV--DWENGFVE 290 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la----~~--~~~~~~~E 290 (592)
. ..|+++|+||+|+.......+.. +...+....++..+.+ .. ....++|.
T Consensus 106 ~----~~~~ilV~nK~D~~~~~~~~~~~--------------------~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~ 161 (197)
T cd04104 106 M----GKKFYFVRTKVDRDLSNEQRSKP--------------------RSFNREQVLQEIRDNCLENLQEAGVSEPPVFL 161 (197)
T ss_pred h----CCCEEEEEecccchhhhhhcccc--------------------ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3 57999999999996431110000 0000000011111111 11 12346899
Q ss_pred cccC--CCccHHHHHHHHHHHHHHh
Q psy1524 291 ASAK--DNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 291 vSAk--tg~gVeeLf~~Li~~i~~~ 313 (592)
+|+. .+.|+..+.+.|+..+...
T Consensus 162 vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 162 VSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred EeCCChhhcChHHHHHHHHHHhhHH
Confidence 9998 6799999999999998543
No 231
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=132.55 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
-|.+||.|||||||||+.++..+- ..+|..||....-..+.+++. -.+.+-|.||.-++.....+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG----------- 228 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLG----------- 228 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCcc-----------
Confidence 455899999999999999996643 478899988655555555222 2345599999843322211110
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC---HHHHHHHHHHHHHhh-
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS---FEEIRLIRDHIFETK- 218 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S---fe~l~~~l~~L~~~~- 218 (592)
.+|- ..+.++.++++|+|++..+- .+++..+..+|..+.
T Consensus 229 ---------------------------------~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~ 271 (369)
T COG0536 229 ---------------------------------LRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP 271 (369)
T ss_pred ---------------------------------HHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence 1111 12678999999999986553 677777888887652
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-cCCCeEEEcccCCCc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-DWENGFVEASAKDNT 297 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg~ 297 (592)
.-.+.|.+||+||+|+..+.+ ........+.+. .+...++ +||.++.
T Consensus 272 ~L~~K~~ivv~NKiD~~~~~e-------------------------------~~~~~~~~l~~~~~~~~~~~-ISa~t~~ 319 (369)
T COG0536 272 KLAEKPRIVVLNKIDLPLDEE-------------------------------ELEELKKALAEALGWEVFYL-ISALTRE 319 (369)
T ss_pred HhccCceEEEEeccCCCcCHH-------------------------------HHHHHHHHHHHhcCCCccee-eehhccc
Confidence 235789999999999665411 111122223221 2222233 9999999
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy1524 298 NITQVFKELLVQAKVKY 314 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~ 314 (592)
|++++...+.+.+....
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999998886553
No 232
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.37 E-value=7.7e-12 Score=111.71 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=75.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+|+|+|.+|||||||+|+|++... .....+++.......+.+++..+. |+||||..+....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~--~vDtpG~~~~~~~~-------------- 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFI--LVDTPGINDGESQD-------------- 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEE--EEESSSCSSSSHHH--------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEE--EEeCCCCcccchhh--------------
Confidence 699999999999999999997543 355566666555566677887765 59999983211100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
. . .+.+..... .+..+|++++|+|++++.. +....++..|. .
T Consensus 65 ~---~----------------------------~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~ 106 (116)
T PF01926_consen 65 N---D----------------------------GKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK-----N 106 (116)
T ss_dssp H---H----------------------------HHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----T
T ss_pred H---H----------------------------HHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----c
Confidence 0 0 011112222 3478999999999776321 33344444442 4
Q ss_pred CCCEEEEEeC
Q psy1524 222 AVPIVVVGNK 231 (592)
Q Consensus 222 ~~PIILVgNK 231 (592)
+.|+++|.||
T Consensus 107 ~~~~i~v~NK 116 (116)
T PF01926_consen 107 KKPIILVLNK 116 (116)
T ss_dssp TSEEEEEEES
T ss_pred CCCEEEEEcC
Confidence 7899999998
No 233
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.4e-11 Score=126.99 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=51.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~ 123 (592)
.-..+|++||.|+||||||++.|++..- ...|.+||.......+.++|.+ +||+|+||.-++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~g 123 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEG 123 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccC
Confidence 4457999999999999999999997644 4789999998888889998855 556999998443
No 234
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=3.2e-12 Score=129.32 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=121.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCc-cC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY-KR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~-~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...++|+|+|.+|||||||||+|..+...+.. .+ ++.....-...+++. .+.||||||.+++...+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D---------- 104 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKD---------- 104 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhh----------
Confidence 56689999999999999999999965443221 12 222111122234553 45569999996543322
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
.+++.....++.++|.++++.|+.|+.--.+...|.+.+...
T Consensus 105 --------------------------------------~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~ 146 (296)
T COG3596 105 --------------------------------------AEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG 146 (296)
T ss_pred --------------------------------------HHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc
Confidence 457777777889999999999999886444445455555443
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCCC
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKDN 296 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAktg 296 (592)
-+.++++|.|.+|...+...|+.....+...+ ++...+++..+.+... -.+++.+|...+
T Consensus 147 ---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~----------------~qfi~~k~~~~~~~~q~V~pV~~~~~r~~ 207 (296)
T COG3596 147 ---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAI----------------KQFIEEKAEALGRLFQEVKPVVAVSGRLP 207 (296)
T ss_pred ---cCceeEEEEehhhhhccccccccccCCCCHHH----------------HHHHHHHHHHHHHHHhhcCCeEEeccccC
Confidence 35899999999999887555544333322222 3333444444444322 235778889999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.|++++...+++.+.
T Consensus 208 wgl~~l~~ali~~lp 222 (296)
T COG3596 208 WGLKELVRALITALP 222 (296)
T ss_pred ccHHHHHHHHHHhCc
Confidence 999999999999884
No 235
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.35 E-value=4.3e-12 Score=126.56 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCC------------------------------CCccCceeeeEEEEEeeCCeEEE
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN--TFS------------------------------PKYKRTIEEMHHEDFSMNGVHLK 111 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~--~f~------------------------------~~~~~Tt~d~~~~~v~vdg~~v~ 111 (592)
+|+|+|..++|||||+.+|+.. ... +....++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 4899999999999999999732 110 0111222233344444455 56
Q ss_pred EEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCc
Q psy1524 112 LDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADA 191 (592)
Q Consensus 112 L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~ 191 (592)
+.||||||+ ..|.......+..+|+
T Consensus 79 i~liDtpG~-------------------------------------------------------~~~~~~~~~~~~~~d~ 103 (219)
T cd01883 79 FTILDAPGH-------------------------------------------------------RDFVPNMITGASQADV 103 (219)
T ss_pred EEEEECCCh-------------------------------------------------------HHHHHHHHHHhhhCCE
Confidence 677999998 3444444445678999
Q ss_pred EEEEEeCCCcCC---HH---HHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 192 FILVYAIDDPNS---FE---EIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 192 iIlVyDvsd~~S---fe---~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
+|+|+|+++... |. .....+..+.. ....|+|+|+||+|+..
T Consensus 104 ~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 104 AVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 999999998521 11 11222222222 12368999999999973
No 236
>KOG0072|consensus
Probab=99.31 E-value=1.9e-12 Score=118.77 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
...+|+++|-.|+||||++-++.-+..+. ..||++.... .+.-+...+++||..|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve---~v~yKNLk~~vwdLggq-------------------- 72 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE---TVPYKNLKFQVWDLGGQ-------------------- 72 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc---ccccccccceeeEccCc--------------------
Confidence 56899999999999999999988666553 4566653221 12225577888999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHH-HHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLI-RDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~-l~~L~~~~~ 219 (592)
-..+..++.|+.+.|++|+|+|.+|.+...-.... +..|.+- .
T Consensus 73 -----------------------------------tSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~-e 116 (182)
T KOG0072|consen 73 -----------------------------------TSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE-E 116 (182)
T ss_pred -----------------------------------ccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH-h
Confidence 66788999999999999999999998765444332 2223222 2
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH--Hh-hcCCCeEEEcccCCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV--VQ-VDWENGFVEASAKDN 296 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l--a~-~~~~~~~~EvSAktg 296 (592)
-.+..+++++||.|.... ....|....+ .+ ......+|++||.+|
T Consensus 117 Lq~a~llv~anKqD~~~~--------------------------------~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg 164 (182)
T KOG0072|consen 117 LQHAKLLVFANKQDYSGA--------------------------------LTRSEVLKMLGLQKLKDRIWQIVKTSAVKG 164 (182)
T ss_pred hcCceEEEEeccccchhh--------------------------------hhHHHHHHHhChHHHhhheeEEEeeccccc
Confidence 345789999999997643 1111111111 11 122356899999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
+|++++++++.+.+.
T Consensus 165 ~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 165 EGLDPAMDWLQRPLK 179 (182)
T ss_pred cCCcHHHHHHHHHHh
Confidence 999999999999874
No 237
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.30 E-value=5.6e-11 Score=128.73 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEe---------------------eCC-eEEEEEEEeCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFS---------------------MNG-VHLKLDILDTSG 119 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~---------------------vdg-~~v~L~I~DT~G 119 (592)
++|+|||.+|||||||+|+|++..+. .+|..++.+.....+. .++ ..+.++||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999977664 4666666544333322 122 236788999999
Q ss_pred C
Q psy1524 120 E 120 (592)
Q Consensus 120 ~ 120 (592)
.
T Consensus 82 l 82 (396)
T PRK09602 82 L 82 (396)
T ss_pred c
Confidence 8
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.30 E-value=2.9e-11 Score=131.21 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcC-------CCC----------CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYN-------TFS----------PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~-------~f~----------~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
..+.++|+++|..++|||||+++|++. .+. +.....+.+.....+..++ ..+.|+||||+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh- 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGH- 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCH-
Confidence 356799999999999999999999852 110 0011122222222222334 34567999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
++|.......+..+|++++|+|+++.
T Consensus 86 ------------------------------------------------------~~f~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 86 ------------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred ------------------------------------------------------HHHHHHHHhhhccCCEEEEEEECCCC
Confidence 45544444557789999999999875
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEE-EEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIV-VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PII-LVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la 280 (592)
..- ....++..+.. .++|.+ +|+||+|+.++... .....++...+.
T Consensus 112 ~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~----------------------------~~~~~~ei~~~l 158 (396)
T PRK12735 112 PMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEEL----------------------------LELVEMEVRELL 158 (396)
T ss_pred Cch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHH----------------------------HHHHHHHHHHHH
Confidence 322 22233333332 357755 68999999743110 011112334443
Q ss_pred hhc----CCCeEEEcccCCCc----------cHHHHHHHHHHH
Q psy1524 281 QVD----WENGFVEASAKDNT----------NITQVFKELLVQ 309 (592)
Q Consensus 281 ~~~----~~~~~~EvSAktg~----------gVeeLf~~Li~~ 309 (592)
+.. ...+++++||++|. ++.+|++.+...
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 322 13679999999995 466666666554
No 239
>KOG0410|consensus
Probab=99.30 E-value=4.2e-12 Score=130.33 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=120.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
.....-|++||++|+|||||+++|+... ++.+....|.|.......+ +|..+.+ .||.|+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vll--tDTvGF---------------- 236 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLL--TDTVGF---------------- 236 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEE--eechhh----------------
Confidence 3445689999999999999999999543 3456666777766666665 5555555 999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++.+++.+..+|.++.++ +..||++|+|.|+++|.--+.....+..|..
T Consensus 237 -----------------------isdLP~~LvaAF~ATLee--------VaeadlllHvvDiShP~ae~q~e~Vl~vL~~ 285 (410)
T KOG0410|consen 237 -----------------------ISDLPIQLVAAFQATLEE--------VAEADLLLHVVDISHPNAEEQRETVLHVLNQ 285 (410)
T ss_pred -----------------------hhhCcHHHHHHHHHHHHH--------HhhcceEEEEeecCCccHHHHHHHHHHHHHh
Confidence 777888888899888887 7889999999999999988888888888877
Q ss_pred hhcCCCCC----EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524 217 TKASTAVP----IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292 (592)
Q Consensus 217 ~~~~~~~P----IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS 292 (592)
+ .-+..| +|=|=||+|..... +.. ... .-+.+|
T Consensus 286 i-gv~~~pkl~~mieVdnkiD~e~~~--------------------------------~e~---------E~n-~~v~is 322 (410)
T KOG0410|consen 286 I-GVPSEPKLQNMIEVDNKIDYEEDE--------------------------------VEE---------EKN-LDVGIS 322 (410)
T ss_pred c-CCCcHHHHhHHHhhcccccccccc--------------------------------Ccc---------ccC-Cccccc
Confidence 6 222333 56677888876541 000 111 156789
Q ss_pred cCCCccHHHHHHHHHHHHH
Q psy1524 293 AKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~ 311 (592)
|++|.|++++...+-..+.
T Consensus 323 altgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccCccHHHHHHHHHHHhh
Confidence 9999999999988877764
No 240
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.28 E-value=9.1e-11 Score=120.86 Aligned_cols=115 Identities=16% Similarity=0.283 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC--CCCCC--------ccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN--TFSPK--------YKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~--~f~~~--------~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
-+|+|+|.+|+|||||+++|+.. ..... ...|+.| .......++...+.++||||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~- 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH- 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc-
Confidence 47999999999999999999842 11100 0111111 12223344445577888999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
++|......+++.+|++|+|+|+++.
T Consensus 82 ------------------------------------------------------~df~~~~~~~l~~aD~~IlVvda~~g 107 (267)
T cd04169 82 ------------------------------------------------------EDFSEDTYRTLTAVDSAVMVIDAAKG 107 (267)
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 56666566678899999999999876
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.. .....++..+. ..++|+++++||+|+...
T Consensus 108 ~~-~~~~~i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 108 VE-PQTRKLFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred cc-HHHHHHHHHHH----hcCCCEEEEEECCccCCC
Confidence 43 22233443332 247899999999998654
No 241
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=7.9e-11 Score=127.75 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=73.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC------------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF------------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f------------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
...++|+++|..++|||||+++|++... . +.....+.+.....+..++ ..+.|+||||+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~--~~i~~iDtPGh-- 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK--RHYAHVDCPGH-- 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC--cEEEEEECCCH--
Confidence 4579999999999999999999985210 0 0011222233222222233 45567999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
++|.......+..+|++++|+|+++..
T Consensus 86 -----------------------------------------------------~~f~~~~~~~~~~~d~~llVvd~~~g~ 112 (394)
T PRK12736 86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP 112 (394)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 555544444567899999999998643
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524 203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE 237 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~ 237 (592)
.-. ...++..+.. .++| +|+|+||+|+.++
T Consensus 113 ~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 113 MPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred chh-HHHHHHHHHH----cCCCEEEEEEEecCCcch
Confidence 222 2223333333 2567 7889999998743
No 242
>CHL00071 tufA elongation factor Tu
Probab=99.26 E-value=8.6e-11 Score=128.07 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=74.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCC----------------C-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS----------------P-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~----------------~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
....++|+++|..++|||||+++|++..-. . .....+.+.....+..++. .+.|+||||+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~~~~iDtPGh- 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENR--HYAHVDCPGH- 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCe--EEEEEECCCh-
Confidence 356699999999999999999999953110 0 0111122222223333444 4556999998
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
.+|.......+..+|++++|+|++..
T Consensus 86 ------------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 86 ------------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 44444445557889999999999865
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE 237 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~ 237 (592)
.. ......+..+.. .++| +|+|.||+|+.+.
T Consensus 112 ~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 112 PM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred Cc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCH
Confidence 32 222333333333 3578 7789999999754
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.26 E-value=2.3e-11 Score=125.85 Aligned_cols=61 Identities=30% Similarity=0.557 Sum_probs=48.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCC----------ccCcee-eeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPK----------YKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~----------~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
..++|+|+|.+|+|||||+|+|++..+... ..+|+. +.....+..++..+.++||||||++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 468999999999999999999998876532 344544 4555566678888999999999984
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.25 E-value=3.3e-11 Score=134.90 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=78.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCC--CC------ccCcee-----------eeEEEEEeeCCeEEEEEEEeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFS--PK------YKRTIE-----------EMHHEDFSMNGVHLKLDILDTS 118 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~--~~------~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~ 118 (592)
....+|+|+|..++|||||+++|+. +... .. ...++. ........++...+.++|||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999973 2111 00 000100 1112222333344677889999
Q ss_pred CCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC
Q psy1524 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI 198 (592)
Q Consensus 119 G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv 198 (592)
|+ +.|......++..+|++|+|+|+
T Consensus 88 G~-------------------------------------------------------~df~~~~~~~l~~aD~aIlVvDa 112 (526)
T PRK00741 88 GH-------------------------------------------------------EDFSEDTYRTLTAVDSALMVIDA 112 (526)
T ss_pred Cc-------------------------------------------------------hhhHHHHHHHHHHCCEEEEEEec
Confidence 99 66666666778999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 199 sd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
++...- ....++..+. ..++|+|+++||+|+...
T Consensus 113 ~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 113 AKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CCCCCH-HHHHHHHHHH----hcCCCEEEEEECCccccc
Confidence 876432 2333443332 347899999999998754
No 245
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.25 E-value=7.7e-11 Score=118.23 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCccC----------------ceeeeEEEEEee--------CCeEEEEEEEeC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT--FSPKYKR----------------TIEEMHHEDFSM--------NGVHLKLDILDT 117 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~--f~~~~~~----------------Tt~d~~~~~v~v--------dg~~v~L~I~DT 117 (592)
+|+|+|..++|||||+.+|+... +...... |+. .....+.. ++..+.++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~-~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMK-SSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccc-cceEEEEEecCcccccCCCceEEEEECC
Confidence 69999999999999999998432 1111100 111 01111222 245788999999
Q ss_pred CCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe
Q psy1524 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA 197 (592)
Q Consensus 118 ~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD 197 (592)
||+ +.|......+++.+|++|+|||
T Consensus 81 PG~-------------------------------------------------------~~f~~~~~~~l~~aD~~ilVvD 105 (222)
T cd01885 81 PGH-------------------------------------------------------VDFSSEVTAALRLCDGALVVVD 105 (222)
T ss_pred CCc-------------------------------------------------------cccHHHHHHHHHhcCeeEEEEE
Confidence 999 6777788888999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 198 IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 198 vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
+++..+..... .+..+. ..++|+|+|+||+|+..
T Consensus 106 ~~~g~~~~t~~-~l~~~~----~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 106 AVEGVCVQTET-VLRQAL----KERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCCCHHHHH-HHHHHH----HcCCCEEEEEECCCcch
Confidence 99887665432 222222 23679999999999864
No 246
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.24 E-value=1.1e-10 Score=126.51 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=73.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC-------C-----C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-------F-----S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-------f-----~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
.+.++|+++|..++|||||+++|++.. + . +.....+.+... +.++.....+.||||||+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh-- 85 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGH-- 85 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCch--
Confidence 567999999999999999999997320 0 0 011222223322 233333455677999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
++|..........+|++++|+|+++..
T Consensus 86 -----------------------------------------------------~~f~~~~~~~~~~~D~~ilVvda~~g~ 112 (394)
T TIGR00485 86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVSATDGP 112 (394)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 555544444567889999999998743
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCE-EEEEeCCCCccc
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPI-VVVGNKSDLADE 237 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PI-ILVgNK~DL~~~ 237 (592)
.... ...+..+.. .++|. |+|+||+|+.++
T Consensus 113 ~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 113 MPQT-REHILLARQ----VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred cHHH-HHHHHHHHH----cCCCEEEEEEEecccCCH
Confidence 3222 223333333 25665 478999998754
No 247
>KOG0462|consensus
Probab=99.24 E-value=9.6e-11 Score=127.27 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=110.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC---------C------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP---------K------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~---------~------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
++.-++.||-.-.-|||||..||+.- .... + ---|+.-.....+..+++.+.|+++||||+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-- 135 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-- 135 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc--
Confidence 45668999999999999999999832 1111 0 111333344445555789999999999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
-.|..--...+.-||++|+|+|++..-
T Consensus 136 -----------------------------------------------------vDFs~EVsRslaac~G~lLvVDA~qGv 162 (650)
T KOG0462|consen 136 -----------------------------------------------------VDFSGEVSRSLAACDGALLVVDASQGV 162 (650)
T ss_pred -----------------------------------------------------ccccceehehhhhcCceEEEEEcCcCc
Confidence 333333344577899999999999876
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV 282 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~ 282 (592)
--..+..++..+. .+.-+|.|.||+|+...+. ..| ..+...+-.
T Consensus 163 qAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp-----------------------------e~V-~~q~~~lF~- 206 (650)
T KOG0462|consen 163 QAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP-----------------------------ERV-ENQLFELFD- 206 (650)
T ss_pred hHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH-----------------------------HHH-HHHHHHHhc-
Confidence 5555555555443 3688999999999987621 011 111222211
Q ss_pred cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
....+++.+|||+|.|++++|+++++.+
T Consensus 207 ~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 207 IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 2344689999999999999999999988
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.23 E-value=1.1e-10 Score=135.15 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=80.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCC--C-----------CC-------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNT--F-----------SP-------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f-----------~~-------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...+|+|+|..|+|||||+++|+... . .. .+..|+. .....+..+ .+.++||||||+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~-~~~~~~~~~--~~~i~liDtPG~ 83 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE-SAATSCDWD--NHRINLIDTPGH 83 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc-cceEEEEEC--CEEEEEEECCCc
Confidence 45799999999999999999998421 1 00 0111222 111123333 467788999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
.+|......+++.+|++|+|+|+++
T Consensus 84 -------------------------------------------------------~df~~~~~~~l~~aD~~ilVvd~~~ 108 (687)
T PRK13351 84 -------------------------------------------------------IDFTGEVERSLRVLDGAVVVFDAVT 108 (687)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 6677777888999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..+......| ..+.. .++|+++|+||+|+...
T Consensus 109 ~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 109 GVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred CCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence 8776654433 33333 36899999999998864
No 249
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.22 E-value=5.9e-11 Score=121.95 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcc------Ccee-------------eeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIE-------------EMHHEDFSMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~-------------d~~~~~v~vdg~~v~L~I~DT~G~~~~~ 124 (592)
+|+|+|.+|||||||+++|+...-..... .++. ......+..++ +.++||||||.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~---- 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGY---- 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCH----
Confidence 58999999999999999998432110000 0100 11122233344 56677999998
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
..|......++..+|++|+|+|+++....
T Consensus 75 ---------------------------------------------------~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~ 103 (268)
T cd04170 75 ---------------------------------------------------ADFVGETRAALRAADAALVVVSAQSGVEV 103 (268)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHCCEEEEEEeCCCCCCH
Confidence 55656666778999999999999987655
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.... .+..+.. .++|+++|+||+|+...
T Consensus 104 ~~~~-~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 104 GTEK-LWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHH-HHHHHHH----cCCCEEEEEECCccCCC
Confidence 4333 3333332 36899999999998753
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.21 E-value=3.2e-10 Score=127.04 Aligned_cols=117 Identities=17% Similarity=0.276 Sum_probs=77.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------C--ccCcee-----------eeEEEEEeeCCeEEEEEEEeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------K--YKRTIE-----------EMHHEDFSMNGVHLKLDILDTS 118 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------~--~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~ 118 (592)
....+|+|+|.+++|||||+++|+. +.... . ...|+. ........++...+.++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999862 22110 0 001111 1122233444555778889999
Q ss_pred CCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC
Q psy1524 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI 198 (592)
Q Consensus 119 G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv 198 (592)
|+ ..|......++..+|++|+|+|+
T Consensus 89 G~-------------------------------------------------------~df~~~~~~~l~~aD~aIlVvDa 113 (527)
T TIGR00503 89 GH-------------------------------------------------------EDFSEDTYRTLTAVDNCLMVIDA 113 (527)
T ss_pred Ch-------------------------------------------------------hhHHHHHHHHHHhCCEEEEEEEC
Confidence 99 55666566678899999999999
Q ss_pred CCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 199 sd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
++... .....++..+.. .++|+|+++||+|+..
T Consensus 114 ~~gv~-~~t~~l~~~~~~----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 114 AKGVE-TRTRKLMEVTRL----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCCCC-HHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence 87522 223344443322 4789999999999864
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.21 E-value=1.3e-10 Score=128.74 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=90.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCc----------cCce----------------------eeeEEEEEee
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKY----------KRTI----------------------EEMHHEDFSM 105 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~----------~~Tt----------------------~d~~~~~v~v 105 (592)
...++|+|+|..++|||||+.+|+.. ...... ..++ -+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 55699999999999999999999843 121100 1111 1222222333
Q ss_pred CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS 185 (592)
Q Consensus 106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 185 (592)
++ ..+.|+||||+ +.|.......
T Consensus 105 ~~--~~i~~iDTPGh-------------------------------------------------------~~f~~~~~~~ 127 (474)
T PRK05124 105 EK--RKFIIADTPGH-------------------------------------------------------EQYTRNMATG 127 (474)
T ss_pred CC--cEEEEEECCCc-------------------------------------------------------HHHHHHHHHH
Confidence 44 45667999998 5554444445
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
+..+|++|+|+|++....-.. ...+..+... . ..|+|+|+||+|+...+... +
T Consensus 128 l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g--~~~iIvvvNKiD~~~~~~~~----------~------------- 180 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G--IKHLVVAVNKMDLVDYSEEV----------F------------- 180 (474)
T ss_pred HhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C--CCceEEEEEeeccccchhHH----------H-------------
Confidence 689999999999976532111 1111112221 1 24799999999987431100 0
Q ss_pred CCCCCCChHHHHHHHhh---cCCCeEEEcccCCCccHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQV---DWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~---~~~~~~~EvSAktg~gVeeLf 303 (592)
....++...+.+. ....+++++||++|.||+++-
T Consensus 181 ----~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ----ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred ----HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 0001112222221 124679999999999998753
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.19 E-value=2.2e-10 Score=118.25 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN--TFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~--~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~ 124 (592)
+|+|+|.+|+|||||+++|+.. ... . .....+.+.....+..++ +.++|+||||+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~---- 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGH---- 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCc----
Confidence 5899999999999999999732 110 0 011111122223334455 45667999998
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
..|......+++.+|++|+|+|+++...-
T Consensus 75 ---------------------------------------------------~df~~~~~~~l~~aD~ailVVDa~~g~~~ 103 (270)
T cd01886 75 ---------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVAGVEP 103 (270)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHcCEEEEEEECCCCCCH
Confidence 44555566789999999999999876432
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
. ....+..+.. .++|+|++.||+|+...
T Consensus 104 ~-t~~~~~~~~~----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 104 Q-TETVWRQADR----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred H-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 2 2233333333 36899999999998753
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.19 E-value=1.7e-10 Score=125.62 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=54.6
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL 255 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~ 255 (592)
++|.......+..+|++|+|+|++....-.. ...+..+... ...++|+|+||+|+...+... +
T Consensus 91 ~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~----------~--- 153 (406)
T TIGR02034 91 EQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL---GIRHVVLAVNKMDLVDYDEEV----------F--- 153 (406)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc---CCCcEEEEEEecccccchHHH----------H---
Confidence 5665444456789999999999976532111 1112222222 234689999999987531100 0
Q ss_pred CCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCccHHHH
Q psy1524 256 PDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTNITQV 302 (592)
Q Consensus 256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~gVeeL 302 (592)
....++...+.+.. ...+++++||++|.|++++
T Consensus 154 --------------~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 154 --------------ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred --------------HHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 00012222222211 2356999999999999863
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.19 E-value=5.1e-10 Score=123.22 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=73.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC------CC------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN------TF------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~------~f------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
...++|+++|..++|||||+++|.+- .. . +.....+.+.....+..++. .+.|+||||+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~~iDtPGh-- 134 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKR--HYAHVDCPGH-- 134 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCe--EEEEEECCCc--
Confidence 56799999999999999999999721 10 0 11122233433333444444 4566999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
.+|.......+..+|++++|+|+++..
T Consensus 135 -----------------------------------------------------~~f~~~~~~g~~~aD~allVVda~~g~ 161 (447)
T PLN03127 135 -----------------------------------------------------ADYVKNMITGAAQMDGGILVVSAPDGP 161 (447)
T ss_pred -----------------------------------------------------cchHHHHHHHHhhCCEEEEEEECCCCC
Confidence 344333333456799999999998654
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524 203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE 237 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~ 237 (592)
.- .....+..+.. .++| +|+|.||+|+.++
T Consensus 162 ~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 162 MP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred ch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCH
Confidence 32 22333333333 3678 5789999999753
No 255
>KOG0090|consensus
Probab=99.18 E-value=3.3e-11 Score=117.63 Aligned_cols=186 Identities=17% Similarity=0.237 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
-.|+++|.+++|||+|+.+|..+.+...+. .+ ......+.+++.. +.++|.||+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Si-epn~a~~r~gs~~--~~LVD~PGH---------------------- 92 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-SI-EPNEATYRLGSEN--VTLVDLPGH---------------------- 92 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-ee-ccceeeEeecCcc--eEEEeCCCc----------------------
Confidence 379999999999999999999885543221 11 1222334444444 556999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh---cCCcEEEEEeCC-CcCCHHHHHH-HHHHHHHh
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS---SADAFILVYAID-DPNSFEEIRL-IRDHIFET 217 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~---~AD~iIlVyDvs-d~~Sfe~l~~-~l~~L~~~ 217 (592)
++.+.-..-++. .+-++|||+|.. ......++.. +++.+...
T Consensus 93 ---------------------------------~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~ 139 (238)
T KOG0090|consen 93 ---------------------------------SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS 139 (238)
T ss_pred ---------------------------------HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh
Confidence 444433333444 789999999974 3333444444 45544443
Q ss_pred h-cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC----CCCCCCCChHHHH--HHHhhc-CCCeEE
Q psy1524 218 K-ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI----SGTPDQVPYDTTE--SVVQVD-WENGFV 289 (592)
Q Consensus 218 ~-~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~r~Vs~ee~~--~la~~~-~~~~~~ 289 (592)
. ....+|+++++||.|+.... ..+....++..+++.+..+.++... +...+...-.++. .+.... ....|.
T Consensus 140 ~~~~~~~~vLIaCNKqDl~tAk-t~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~ 218 (238)
T KOG0090|consen 140 RVKKNKPPVLIACNKQDLFTAK-TAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFA 218 (238)
T ss_pred ccccCCCCEEEEecchhhhhcC-cHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEe
Confidence 2 24578999999999998652 1112222344444444444441111 1111111112222 222222 456799
Q ss_pred EcccCCCccHHHHHHHHHHH
Q psy1524 290 EASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~ 309 (592)
++|++++ +++++-+++.+.
T Consensus 219 e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 219 EASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ecccCcC-ChHHHHHHHHHh
Confidence 9999999 899998888654
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.18 E-value=3.4e-11 Score=116.77 Aligned_cols=117 Identities=19% Similarity=0.317 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
-.|+|+|++|+|||+|+.+|+.+.+.+..... .... .+.+ +...-.+.++|+||+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH--------------------- 59 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGH--------------------- 59 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT----------------------
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCc---------------------
Confidence 47999999999999999999998665433222 2221 1222 222234566999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHH--hhhcCCcEEEEEeCCC-cCCHHHHHHHHHHHHHh
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRAL--SISSADAFILVYAIDD-PNSFEEIRLIRDHIFET 217 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~--~~~~AD~iIlVyDvsd-~~Sfe~l~~~l~~L~~~ 217 (592)
++.+. +... +...+.+||||+|.+. ...+.++..++-.+...
T Consensus 60 ----------------------------------~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 60 ----------------------------------PRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp ----------------------------------HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence 33333 2222 5788999999999873 34455554443333332
Q ss_pred h--cCCCCCEEEEEeCCCCccc
Q psy1524 218 K--ASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 218 ~--~~~~~PIILVgNK~DL~~~ 237 (592)
. ....+|++|++||+|+...
T Consensus 106 ~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 106 TEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhccCCCCEEEEEeCcccccc
Confidence 2 2467899999999999865
No 257
>PLN03126 Elongation factor Tu; Provisional
Probab=99.17 E-value=7.2e-10 Score=122.84 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCC------CCC-----------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNT------FSP-----------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~------f~~-----------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.....++|+++|..++|||||+++|+... ... .....+.+.....+..++ ..+.|+||||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence 34667999999999999999999999521 111 011111122222233344 45567999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
++|.......+..+|++++|+|+++
T Consensus 155 -------------------------------------------------------~~f~~~~~~g~~~aD~ailVVda~~ 179 (478)
T PLN03126 155 -------------------------------------------------------ADYVKNMITGAAQMDGAILVVSGAD 179 (478)
T ss_pred -------------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCC
Confidence 5565555556778999999999987
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE 237 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~ 237 (592)
...- ....++..+.. .++| +|+|.||+|+.+.
T Consensus 180 G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 180 GPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred CCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCH
Confidence 6432 22333333333 3577 7889999999753
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.17 E-value=4.7e-10 Score=109.75 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CC--ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PK--YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~--~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
++|+|+|.+|||||||+|.+++.... .. ..+.+.+.......+++..+ .|+||||..+....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i--~viDTPG~~d~~~~------------- 65 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRV--NVIDTPGLFDTSVS------------- 65 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEE--EEEECcCCCCccCC-------------
Confidence 47999999999999999999977543 22 12334443444455677554 55999998321100
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
.+ .+. ............++|++|+|+|+.+ -+-++ ...+..+.+..+
T Consensus 66 ~~--~~~-----------------------------~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg 112 (196)
T cd01852 66 PE--QLS-----------------------------KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG 112 (196)
T ss_pred hH--HHH-----------------------------HHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC
Confidence 00 000 1111112223467899999999986 33222 334455544422
Q ss_pred C-CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc-----c
Q psy1524 220 S-TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS-----A 293 (592)
Q Consensus 220 ~-~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS-----A 293 (592)
. .-.++|+|.|++|..... ....++. .. ....+.+.+. .+..|+..+ +
T Consensus 113 ~~~~~~~ivv~T~~d~l~~~--------~~~~~~~----------------~~-~~~l~~l~~~-c~~r~~~f~~~~~~~ 166 (196)
T cd01852 113 EKVLDHTIVLFTRGDDLEGG--------TLEDYLE----------------NS-CEALKRLLEK-CGGRYVAFNNKAKGE 166 (196)
T ss_pred hHhHhcEEEEEECccccCCC--------cHHHHHH----------------hc-cHHHHHHHHH-hCCeEEEEeCCCCcc
Confidence 1 125889999999976541 1111111 01 1223333332 222343333 5
Q ss_pred CCCccHHHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~ 312 (592)
..+.+|++|++.+.+.+..
T Consensus 167 ~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 167 EQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 6788999999999988865
No 259
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.17 E-value=1.2e-10 Score=103.74 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=38.6
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
++.++.+++|||.++..+++.+ |...+... ...++|+++++||.|+.+.
T Consensus 44 ~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 44 YESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE 92 (124)
T ss_pred cCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh
Confidence 5678999999999999998776 66655543 3467899999999998543
No 260
>PRK00049 elongation factor Tu; Reviewed
Probab=99.16 E-value=4.3e-10 Score=122.09 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=73.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC-----------------CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-----------------PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-----------------~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
...++|+++|..++|||||+++|+..... +.....+.+.....+..++. .+.|+||||+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~--~i~~iDtPG~-- 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKR--HYAHVDCPGH-- 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCe--EEEEEECCCH--
Confidence 56799999999999999999999963110 00112222332222333443 4556999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
.+|.......+..+|++++|+|+++..
T Consensus 86 -----------------------------------------------------~~f~~~~~~~~~~aD~~llVVDa~~g~ 112 (396)
T PRK00049 86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADGP 112 (396)
T ss_pred -----------------------------------------------------HHHHHHHHhhhccCCEEEEEEECCCCC
Confidence 444444445578899999999998753
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCEE-EEEeCCCCcc
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPIV-VVGNKSDLAD 236 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PII-LVgNK~DL~~ 236 (592)
. .....++..+.. .++|++ ++.||+|+.+
T Consensus 113 ~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 113 M-PQTREHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred c-hHHHHHHHHHHH----cCCCEEEEEEeecCCcc
Confidence 3 222333343433 257865 6899999974
No 261
>KOG0077|consensus
Probab=99.15 E-value=1.1e-10 Score=109.67 Aligned_cols=115 Identities=21% Similarity=0.380 Sum_probs=92.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC---CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS---PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~---~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+.-|++++|-.|+|||||++.|-.+... +...||. ..+.+.+ ++++-.|.+|+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~Ig~--m~ftt~DLGGH----------------- 74 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELSIGG--MTFTTFDLGGH----------------- 74 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHheecC--ceEEEEccccH-----------------
Confidence 3459999999999999999999876543 3334444 3445666 45566999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
..-+..+..|+..+|++++.+|+-|.+.|.+.+..++.+...
T Consensus 75 --------------------------------------~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~ 116 (193)
T KOG0077|consen 75 --------------------------------------LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD 116 (193)
T ss_pred --------------------------------------HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH
Confidence 455678888999999999999999999999988888877765
Q ss_pred hcCCCCCEEEEEeCCCCccc
Q psy1524 218 KASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~ 237 (592)
......|+++.+||+|....
T Consensus 117 e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 117 ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhcCcceeecccccCCCc
Confidence 45578999999999998865
No 262
>KOG1490|consensus
Probab=99.15 E-value=2.2e-10 Score=123.33 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=119.3
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..+..-.++|+|.+|||||||+|..+.... +..|..|+.-.+...+ +-.-..++++||||.-+-
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~------------- 228 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDR------------- 228 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCc-------------
Confidence 345667999999999999999999986654 4677777764444332 334456788999998211
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc--CCHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP--NSFEEIRLIRDHI 214 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~--~Sfe~l~~~l~~L 214 (592)
|....++ .+..++..+.-- -.+++++.|++.. .|.+....++..|
T Consensus 229 ----------------plEdrN~----------------IEmqsITALAHL-raaVLYfmDLSe~CGySva~QvkLfhsI 275 (620)
T KOG1490|consen 229 ----------------PEEDRNI----------------IEMQIITALAHL-RSAVLYFMDLSEMCGYSVAAQVKLYHSI 275 (620)
T ss_pred ----------------chhhhhH----------------HHHHHHHHHHHh-hhhheeeeechhhhCCCHHHHHHHHHHh
Confidence 0001000 223333333222 2478888999864 5777777788888
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH--HHHhhcCCCeEEEcc
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE--SVVQVDWENGFVEAS 292 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~--~la~~~~~~~~~EvS 292 (592)
+... .+.|+|+|+||+|+... ..++.+... +......+.+++++|
T Consensus 276 KpLF--aNK~~IlvlNK~D~m~~-------------------------------edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 276 KPLF--ANKVTILVLNKIDAMRP-------------------------------EDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHh--cCCceEEEeecccccCc-------------------------------cccCHHHHHHHHHHHhccCceEEEec
Confidence 7764 47899999999999865 223333322 222335567899999
Q ss_pred cCCCccHHHHHHHHHHHHHHhcc
Q psy1524 293 AKDNTNITQVFKELLVQAKVKYN 315 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~~~~~ 315 (592)
+.+.+||.++-...++.++..+-
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHH
Confidence 99999999999988888876543
No 263
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.14 E-value=5.8e-10 Score=122.78 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=95.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------C------ccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------K------YKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------~------~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..++|||||+-+|+.. .... + ....+-+... ..+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence 45689999999999999999999832 1110 0 0000111111 22333
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
....++|+||||+ ++|.......+.
T Consensus 83 ~~~~i~liDtPGh-------------------------------------------------------~df~~~~~~g~~ 107 (447)
T PLN00043 83 TKYYCTVIDAPGH-------------------------------------------------------RDFIKNMITGTS 107 (447)
T ss_pred CCEEEEEEECCCH-------------------------------------------------------HHHHHHHHhhhh
Confidence 4467778999999 788877788889
Q ss_pred cCCcEEEEEeCCCcCCHH-------HHHHHHHHHHHhhcCCCC-CEEEEEeCCCCcccccccccCCCCcccccCCCCCcc
Q psy1524 188 SADAFILVYAIDDPNSFE-------EIRLIRDHIFETKASTAV-PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSV 259 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe-------~l~~~l~~L~~~~~~~~~-PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~ 259 (592)
.+|++|+|+|+++ .+|+ .....+..+.. .++ ++|+|+||+|+.+.. +. ...+
T Consensus 108 ~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~--~~------~~~~------- 167 (447)
T PLN00043 108 QADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPK--YS------KARY------- 167 (447)
T ss_pred hccEEEEEEEccc-CceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchh--hh------HHHH-------
Confidence 9999999999987 3332 23333332222 255 578899999986220 00 0000
Q ss_pred ccccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHH
Q psy1524 260 CAHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQ 301 (592)
Q Consensus 260 ~~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVee 301 (592)
.. ..+++..+++... ..+|+++||++|.||.+
T Consensus 168 ---------~~-i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 168 ---------DE-IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ---------HH-HHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 00 1234444444222 36799999999999864
No 264
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.14 E-value=3.2e-10 Score=130.03 Aligned_cols=57 Identities=19% Similarity=0.081 Sum_probs=35.1
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
++|.......+..+|++|+|+|+++...-. ....+..+... ...++|||+||+|+.+
T Consensus 115 ~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 115 EQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVD 171 (632)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEeccccc
Confidence 455443444578899999999997653211 11122222222 2357899999999974
No 265
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-09 Score=119.63 Aligned_cols=166 Identities=27% Similarity=0.303 Sum_probs=110.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+.+-|+++|.-.-|||||+..+-+..........+. ...-..+.++ +..-.+.|+||||+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH------------------ 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH------------------ 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH------------------
Confidence 446799999999999999999998877655554443 3333334443 12235567999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.|..|+..-..-+|++|||+|++|.---..++. +..+
T Consensus 66 -------------------------------------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-I~ha---- 103 (509)
T COG0532 66 -------------------------------------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-INHA---- 103 (509)
T ss_pred -------------------------------------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-HHHH----
Confidence 8999999998889999999999998532222221 1112
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+|++.||+|..+.+... ....+++ ..+. .+.| .....++++||++|+|
T Consensus 104 k~a~vP~iVAiNKiDk~~~np~~------v~~el~~--------------~gl~---~E~~---gg~v~~VpvSA~tg~G 157 (509)
T COG0532 104 KAAGVPIVVAINKIDKPEANPDK------VKQELQE--------------YGLV---PEEW---GGDVIFVPVSAKTGEG 157 (509)
T ss_pred HHCCCCEEEEEecccCCCCCHHH------HHHHHHH--------------cCCC---Hhhc---CCceEEEEeeccCCCC
Confidence 23589999999999998652110 0000000 0000 0111 2245699999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
+++|++.++-.+..
T Consensus 158 i~eLL~~ill~aev 171 (509)
T COG0532 158 IDELLELILLLAEV 171 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776643
No 266
>KOG1145|consensus
Probab=99.10 E-value=1.4e-09 Score=118.19 Aligned_cols=165 Identities=25% Similarity=0.299 Sum_probs=112.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee---eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~---d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
.++..-|.|+|--.-|||||+..|.+..........+. --+...+. +|+.+.| .||||+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTF--LDTPGH--------------- 211 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITF--LDTPGH--------------- 211 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEE--ecCCcH---------------
Confidence 34667899999999999999999998877644444333 12223333 6765555 999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
..|.+|+..-..-+|++++|+.++|.---..+ +.|.
T Consensus 212 ----------------------------------------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~----EaIk 247 (683)
T KOG1145|consen 212 ----------------------------------------AAFSAMRARGANVTDIVVLVVAADDGVMPQTL----EAIK 247 (683)
T ss_pred ----------------------------------------HHHHHHHhccCccccEEEEEEEccCCccHhHH----HHHH
Confidence 88999999999999999999999886432222 2222
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.. ...+.|||++.||||....+... ....| ...+...-......+++++||++
T Consensus 248 hA-k~A~VpiVvAinKiDkp~a~pek------v~~eL--------------------~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 248 HA-KSANVPIVVAINKIDKPGANPEK------VKREL--------------------LSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred HH-HhcCCCEEEEEeccCCCCCCHHH------HHHHH--------------------HHcCccHHHcCCceeEEEeeccc
Confidence 22 34689999999999987652110 00000 00011111224466799999999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|.|++.|-+.++-++..
T Consensus 301 g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEV 317 (683)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99999999988877644
No 267
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=2.2e-09 Score=115.19 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=105.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----Cc----------cCceee-eEEEEEee-CCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KY----------KRTIEE-MHHEDFSM-NGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~----------~~Tt~d-~~~~~v~v-dg~~v~L~I~DT~G~~ 121 (592)
+.-+++|+-.-.-|||||..|++.. .+.+ .. --|+.- ..+-.+.. +|..|.|+++||||+
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH- 86 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH- 86 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-
Confidence 3447788888899999999999843 2211 11 112221 11112222 678999999999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
-.|.--....+..|.+.|+|+|++..
T Consensus 87 ------------------------------------------------------VDFsYEVSRSLAACEGalLvVDAsQG 112 (603)
T COG0481 87 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDASQG 112 (603)
T ss_pred ------------------------------------------------------cceEEEehhhHhhCCCcEEEEECccc
Confidence 22332233346779999999999988
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~ 281 (592)
-.-..+...|..+.. +.-||-|.||+||...+.. . ...+.+...-
T Consensus 113 veAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpe-----------------------------r-vk~eIe~~iG 157 (603)
T COG0481 113 VEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPE-----------------------------R-VKQEIEDIIG 157 (603)
T ss_pred hHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHH-----------------------------H-HHHHHHHHhC
Confidence 766666666666543 6789999999999876210 0 0112222211
Q ss_pred hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 282 VDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 282 ~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
......+.||||+|.||+++++.+++.+
T Consensus 158 -id~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 158 -IDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred -CCcchheeEecccCCCHHHHHHHHHhhC
Confidence 1233478999999999999999999987
No 268
>PRK12739 elongation factor G; Reviewed
Probab=99.07 E-value=4.1e-09 Score=122.15 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=78.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
....+|+|+|..++|||||+++|+.. ... . .....+.+.....+..++. .++|+||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~--~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGH--RINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCE--EEEEEcCCCH
Confidence 35679999999999999999999742 110 0 1112222444444555664 4566999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
..|.......+..+|++|+|+|+++
T Consensus 84 -------------------------------------------------------~~f~~e~~~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 84 -------------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVS 108 (691)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhCeEEEEEeCCC
Confidence 4455556667889999999999987
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
...-... ..+..+.. .++|+|+++||+|+...
T Consensus 109 g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 109 GVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred CCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 6543332 23333322 36899999999999854
No 269
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.06 E-value=2.7e-10 Score=115.94 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=77.9
Q ss_pred CcchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524 175 TNEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS 253 (592)
Q Consensus 175 ~e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~ 253 (592)
.++|..+.+.+++++|++++|||++++. ||..+..|+..+.. .++|+|||+||+||.+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~---------------- 82 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDD---------------- 82 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCC----------------
Confidence 3788888888999999999999999887 89999999876543 47899999999999754
Q ss_pred CCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHH
Q psy1524 254 GLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308 (592)
Q Consensus 254 ~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~ 308 (592)
+.+..+.+..+. ..+..++++||++|.||+++|+.+..
T Consensus 83 ---------------~~~~~~~~~~~~--~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 83 ---------------EDMEKEQLDIYR--NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred ---------------HHHHHHHHHHHH--HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 233334444443 25678999999999999999987754
No 270
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.05 E-value=1.9e-09 Score=124.90 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=78.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--CCC-----CC------------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFS-----PK------------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~-----~~------------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
...+|+|+|..|+|||||+++|+.. ... .. ...++.+.....+..++ +.++||||||+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~- 85 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH- 85 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC-
Confidence 4569999999999999999999732 110 00 11122233334445555 45667999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
.+|......++..+|++|+|+|+++.
T Consensus 86 ------------------------------------------------------~~~~~~~~~~l~~~D~~ilVvda~~g 111 (689)
T TIGR00484 86 ------------------------------------------------------VDFTVEVERSLRVLDGAVAVLDAVGG 111 (689)
T ss_pred ------------------------------------------------------cchhHHHHHHHHHhCEEEEEEeCCCC
Confidence 44555566678999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
....... ++..+.. .++|+|+|+||+|+...
T Consensus 112 ~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 112 VQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 6554433 3333333 36899999999999754
No 271
>PTZ00258 GTP-binding protein; Provisional
Probab=99.04 E-value=3.6e-09 Score=114.04 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=46.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~ 120 (592)
...++|+|||.||||||||+|+|++... ..++..||.+.....+.+.+.. ..+.|+||||.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4557999999999999999999987644 4677888876666666554322 24678999998
No 272
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.03 E-value=2.4e-09 Score=118.02 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=72.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..++|||||+.+|+.. .... .....+-+.....+..+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~- 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence 55689999999999999999999842 1110 00111112222223333
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
...++|+||||+ ++|.......+.
T Consensus 84 -~~~i~lIDtPGh-------------------------------------------------------~~f~~~~~~g~~ 107 (446)
T PTZ00141 84 -KYYFTIIDAPGH-------------------------------------------------------RDFIKNMITGTS 107 (446)
T ss_pred -CeEEEEEECCCh-------------------------------------------------------HHHHHHHHHhhh
Confidence 456677999999 666665666678
Q ss_pred cCCcEEEEEeCCCcCC---H---HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCc
Q psy1524 188 SADAFILVYAIDDPNS---F---EEIRLIRDHIFETKASTAVP-IVVVGNKSDLA 235 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~S---f---e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~ 235 (592)
.+|++|+|+|+++..- | ......+..+.. -.+| +|+|.||+|..
T Consensus 108 ~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 108 QADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred hcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 9999999999986421 1 122223333322 2555 77999999953
No 273
>PRK00007 elongation factor G; Reviewed
Probab=99.01 E-value=5.3e-09 Score=121.23 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
....+|+|+|..|+|||||+++|+. +... . ....++.+.....+..++ ..++|+||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 3456999999999999999999973 2110 0 111222233334455555 45666999998
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
..|..-....+..+|++|+|+|++.
T Consensus 86 -------------------------------------------------------~~f~~ev~~al~~~D~~vlVvda~~ 110 (693)
T PRK00007 86 -------------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVG 110 (693)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHcCEEEEEEECCC
Confidence 3343334456788999999999887
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
...-.... .+..+.. .++|+|++.||+|+...
T Consensus 111 g~~~qt~~-~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 111 GVEPQSET-VWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred CcchhhHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 65444332 3333333 36899999999999854
No 274
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.01 E-value=3.7e-09 Score=116.54 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=62.9
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL 255 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~ 255 (592)
+.|.......+..+|++++|+|+++...-......+..+ +.. .-.++|+|.||+|+.+....
T Consensus 128 ~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~~--------------- 189 (460)
T PTZ00327 128 DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQA--------------- 189 (460)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHHH---------------
Confidence 666555555677899999999998642111112222222 221 23478999999999753110
Q ss_pred CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.-..++...+.+. ....+++++||++|.|+++|++.|.+.+
T Consensus 190 --------------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 190 --------------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred --------------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 0011222222221 2356899999999999999998887644
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.01 E-value=6.8e-09 Score=116.21 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccc
Q psy1524 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCA 261 (592)
Q Consensus 182 ~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~ 261 (592)
....+..||+||+|+|+++..+..+. .....+... ....|+++|.||+|+.+..
T Consensus 252 M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~--~K~~PVILVVNKIDl~dre----------------------- 305 (741)
T PRK09866 252 LNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV--GQSVPLYVLVNKFDQQDRN----------------------- 305 (741)
T ss_pred HHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc--CCCCCEEEEEEcccCCCcc-----------------------
Confidence 33479999999999999886555442 233444432 1236999999999986431
Q ss_pred ccCCCCCCCCChHHHHHHH-----hhc-CCCeEEEcccCCCccHHHHHHHHHH
Q psy1524 262 HQISGTPDQVPYDTTESVV-----QVD-WENGFVEASAKDNTNITQVFKELLV 308 (592)
Q Consensus 262 ~~~~~~~r~Vs~ee~~~la-----~~~-~~~~~~EvSAktg~gVeeLf~~Li~ 308 (592)
.-..+....+. +.. ....+|+|||++|.|++++++.+..
T Consensus 306 --------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 --------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred --------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 00122333322 111 1346999999999999999988876
No 276
>KOG1532|consensus
Probab=99.00 E-value=5.3e-10 Score=112.80 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=68.4
Q ss_pred CcEEEEEeCC---CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccccccccc--CCCCcccccCCCCCccccccC
Q psy1524 190 DAFILVYAID---DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL--TGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 190 D~iIlVyDvs---d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 264 (592)
-++++|+|.. ++.+|-.-..+.. .+....+.|+|+|.||+|+.+.....++ ..+.|+..+.+..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAc---Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~-------- 217 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYAC---SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAE-------- 217 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHH---HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhc--------
Confidence 4677777753 3444432221111 1224568999999999999876433222 2234444443211
Q ss_pred CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHhcc
Q psy1524 265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYN 315 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~ 315 (592)
+.....+.......+-........+-|||.+|+|.+++|..+-+.+.+...
T Consensus 218 ~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 218 SSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 111222333344444455567789999999999999999999888766443
No 277
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=2.3e-09 Score=108.07 Aligned_cols=169 Identities=19% Similarity=0.274 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--cc-CceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPK--YK-RTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~--~~-~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
||+++|..++||||+.+-+..+..+.+ +. +|+ +.....+.. ...+.+++||.||+.....
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~-~ve~~~v~~-~~~~~l~iwD~pGq~~~~~--------------- 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI-DVEKSHVRF-LSFLPLNIWDCPGQDDFME--------------- 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEEC-TTSCEEEEEEE-SSCSTTH---------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC-CceEEEEec-CCCcEEEEEEcCCcccccc---------------
Confidence 799999999999999998886644322 22 333 222232322 2335778899999921100
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-c
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-A 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~ 219 (592)
..+.......+++++++|+|+|+.+.+-.+++..+...+.... .
T Consensus 64 -----------------------------------~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~ 108 (232)
T PF04670_consen 64 -----------------------------------NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY 108 (232)
T ss_dssp -----------------------------------TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh
Confidence 1122234556899999999999996666666655544443322 4
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcC-CCeEEEcccCCCc
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDW-ENGFVEASAKDNT 297 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~-~~~~~EvSAktg~ 297 (592)
.+++.+-+...|+|+..++.+.+. .+.+. +.....+. ... .+.|+.||... +
T Consensus 109 sp~~~v~vfiHK~D~l~~~~r~~~------------------------~~~~~-~~i~~~~~~~~~~~~~~~~TSI~D-~ 162 (232)
T PF04670_consen 109 SPNIKVFVFIHKMDLLSEDEREEI------------------------FRDIQ-QRIRDELEDLGIEDITFFLTSIWD-E 162 (232)
T ss_dssp STT-EEEEEEE-CCCS-HHHHHHH------------------------HHHHH-HHHHHHHHHTT-TSEEEEEE-TTS-T
T ss_pred CCCCeEEEEEeecccCCHHHHHHH------------------------HHHHH-HHHHHHhhhccccceEEEeccCcC-c
Confidence 688999999999999765321100 00000 11111111 111 26788888887 5
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
.+-++|..+++.+
T Consensus 163 Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 163 SLYEAWSKIVQKL 175 (232)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888776
No 278
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.97 E-value=9e-09 Score=105.07 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.....++|+|+|.+|||||||+|++++.... ....+++..........++. .+.||||||.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCc
Confidence 4467799999999999999999999987543 33444444433334445664 4567999999
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.95 E-value=6.5e-09 Score=123.48 Aligned_cols=53 Identities=34% Similarity=0.476 Sum_probs=40.3
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCC---cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
+.|..++...+..+|++++|+|+++ +.+++.+. .+.. .++|+|+|+||+|+..
T Consensus 537 e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 537 EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCcc
Confidence 7788888778888999999999987 34444433 2222 3689999999999974
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.94 E-value=4.6e-09 Score=122.16 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=79.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC---------------CCCCC---ccCcee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN---------------TFSPK---YKRTIE-EMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~---------------~f~~~---~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
....+|+|+|..++|||||+++|+.. .+.+. ...|+. ......+.+++..+.++||||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 35679999999999999999999842 11111 112332 122223345666788899999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
..|......+++.+|++|+|+|+.+
T Consensus 97 -------------------------------------------------------~~f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 97 -------------------------------------------------------VDFGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred -------------------------------------------------------cccHHHHHHHHHhcCEEEEEEecCC
Confidence 5555566677899999999999987
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
........ .+..+. ..++|+|+|+||+|...
T Consensus 122 g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 122 GVMPQTET-VLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred CCCccHHH-HHHHHH----HcCCCEEEEEEChhccc
Confidence 54332222 222222 23678899999999864
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.94 E-value=1.5e-08 Score=107.00 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=77.8
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
...+..|..++.+++++|+|+|+++- ..+.+....+..+.....-.++|++|++||+|+.... +..
T Consensus 172 ~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~k----i~~ 247 (317)
T cd00066 172 RSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEK----IKK 247 (317)
T ss_pred cccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHh----hcC
Confidence 66778888899999999999999874 3344444455555443333578999999999987651 111
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---------cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---------DWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+...+.+.. +. .-+.+.+..+... ...+-...++|..-.+|..+|+.+.+.|...
T Consensus 248 ~~l~~~fp~y~---------g~--~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 248 SPLTDYFPDYT---------GP--PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred CCccccCCCCC---------CC--CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 12222222111 10 1234444433321 1223356789999999999999999888654
No 282
>PRK12740 elongation factor G; Reviewed
Probab=98.92 E-value=1.4e-08 Score=117.28 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=41.7
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..|......++..+|++|+|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 71 VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCCCC
Confidence 45555666678899999999999987766544333 33332 36899999999998754
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.91 E-value=3.2e-08 Score=103.38 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=46.9
Q ss_pred HHhhhhccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524 40 RILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117 (592)
Q Consensus 40 ~~~~~~s~~~~~~~~~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT 117 (592)
++..++...... ....++|+|+|.+|||||||+|++++... .+...+++..........++ ..++|+||
T Consensus 23 ~l~~~l~~l~~~-------~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDT 93 (313)
T TIGR00991 23 KLLELLGKLKEE-------DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDT 93 (313)
T ss_pred HHHHHHHhcccc-------cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEEC
Confidence 455555554322 35679999999999999999999997753 22333322222222334466 45677999
Q ss_pred CCC
Q psy1524 118 SGE 120 (592)
Q Consensus 118 ~G~ 120 (592)
||.
T Consensus 94 PGL 96 (313)
T TIGR00991 94 PGL 96 (313)
T ss_pred CCC
Confidence 998
No 284
>PRK13768 GTPase; Provisional
Probab=98.90 E-value=6.6e-09 Score=106.26 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCcEEEEEeCCCcCCHHHHHH--HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC---CCCcccccc
Q psy1524 189 ADAFILVYAIDDPNSFEEIRL--IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG---LPDSVCAHQ 263 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~--~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~ 263 (592)
++++++|+|++...+..++.. ++...... ..++|+|+|+||+|+....... .....+.. +........
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~-----~~~~~l~~~~~~~~~l~~~~ 201 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEELE-----RILKWLEDPEYLLEELKLEK 201 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhHH-----HHHHHHhCHHHHHHHHhccc
Confidence 899999999977655444332 22222211 2478999999999998652110 00011100 000000000
Q ss_pred CCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 264 ISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 264 ~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
. .......+-+..+.+......++++||+++.|++++++.+.+.+
T Consensus 202 ~--~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 202 G--LQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred c--hHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 0 00001111112222222345789999999999999999997765
No 285
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.89 E-value=6.3e-09 Score=93.89 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
||++||..|+|||||++.|.+...-...... ++++..- .+||||.-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA--------ve~~d~~----~IDTPGEy---------------------- 48 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA--------VEFNDKG----DIDTPGEY---------------------- 48 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccce--------eeccCcc----ccCCchhh----------------------
Confidence 7999999999999999999977553222222 2222211 28999970
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
+++. --|.++. ....++|++++|-.+++++|.-.-. +. .....
T Consensus 49 -~~~~---------------------------~~Y~aL~-tt~~dadvi~~v~~and~~s~f~p~-----f~---~~~~k 91 (148)
T COG4917 49 -FEHP---------------------------RWYHALI-TTLQDADVIIYVHAANDPESRFPPG-----FL---DIGVK 91 (148)
T ss_pred -hhhh---------------------------HHHHHHH-HHhhccceeeeeecccCccccCCcc-----cc---ccccc
Confidence 0000 1122222 2356799999999999987632111 11 12345
Q ss_pred CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf 303 (592)
|+|-|.+|.||.++. ..+....+.......++|++|+.++.||++++
T Consensus 92 ~vIgvVTK~DLaed~---------------------------------dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 92 KVIGVVTKADLAEDA---------------------------------DISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred ceEEEEecccccchH---------------------------------hHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 799999999999641 22445566665667789999999999999999
Q ss_pred HHHHH
Q psy1524 304 KELLV 308 (592)
Q Consensus 304 ~~Li~ 308 (592)
+.+..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 88764
No 286
>KOG0705|consensus
Probab=98.88 E-value=5.1e-09 Score=113.68 Aligned_cols=166 Identities=19% Similarity=0.342 Sum_probs=133.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+|+.|||..++|||+|+.||+.+.|.....+ .+..+.+.+.+++....+.+-|.+|.
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~------------------- 87 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGH------------------- 87 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCC-------------------
Confidence 3458999999999999999999999999865444 33456677788888888888888886
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
....|...+|++||||.+.|..+|+.+..+...+..+..
T Consensus 88 -----------------------------------------~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~ 126 (749)
T KOG0705|consen 88 -----------------------------------------PDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN 126 (749)
T ss_pred -----------------------------------------chhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc
Confidence 112356789999999999999999999998888877666
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
...+|+++|+++.=...+ ..+.+....+..++.....+.+|+++|.+|.|+
T Consensus 127 r~~i~l~lvgtqd~iS~~-----------------------------~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 127 ISDLPLILVGTQDHISAK-----------------------------RPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred cccchHHhhcCcchhhcc-----------------------------cccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 678899999987433222 226667777787777778888999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1524 300 TQVFKELLVQAKVKYN 315 (592)
Q Consensus 300 eeLf~~Li~~i~~~~~ 315 (592)
+..|..++..+.....
T Consensus 178 ~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 287
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.84 E-value=6.8e-08 Score=103.24 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~ 120 (592)
++|+|||.||||||||+|+|++... ..+|..||.+.....+.+.+.. ..++|+|+||.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL 76 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL 76 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence 6999999999999999999997653 3677777776665666554421 24788999998
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.83 E-value=1.8e-08 Score=99.51 Aligned_cols=81 Identities=20% Similarity=0.129 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE--EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI--VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG 266 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI--ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 266 (592)
+|.+|.|+|+++..+... ... ..+.+ ++|+||+|+.+.
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~----------------------------- 152 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPM----------------------------- 152 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccc-----------------------------
Confidence 688999999987655221 111 12333 899999999742
Q ss_pred CCCCCChHHHHHHHhh-cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 267 TPDQVPYDTTESVVQV-DWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 267 ~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
..-..+.....++. ....++++|||++|+||+++|+++.+.++
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 153 --VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred --ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 00112222222222 44678999999999999999999987653
No 289
>KOG1707|consensus
Probab=98.76 E-value=7e-08 Score=106.14 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=111.9
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
+.....+++.++|+.++|||.|++.|.++.+...+..++. .+....+.+.+..-.+.+.|..-. ..+.+
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l--------- 489 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFL--------- 489 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccc---------
Confidence 3445679999999999999999999999988876666665 344445555566666666665432 00000
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
++. -..||++.++||++++.||+.+...+....
T Consensus 490 ---------------------------------------~~k--------e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~ 522 (625)
T KOG1707|consen 490 ---------------------------------------TSK--------EAACDVACLVYDSSNPRSFEYLAEVYNKYF 522 (625)
T ss_pred ---------------------------------------cCc--------cceeeeEEEecccCCchHHHHHHHHHHHhh
Confidence 010 145899999999999999999888766544
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
. ..+.|+++|++|+|+.+..+. -.+.+ .++++...-.+-+.+|.++
T Consensus 523 ~---~~~~Pc~~va~K~dlDe~~Q~----------------------------~~iqp---de~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 523 D---LYKIPCLMVATKADLDEVPQR----------------------------YSIQP---DEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred h---ccCCceEEEeeccccchhhhc----------------------------cCCCh---HHHHHhcCCCCCeeeccCC
Confidence 3 268999999999999875211 11222 4455544444456678875
Q ss_pred CccHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAK 311 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~ 311 (592)
... .++|..|+..+.
T Consensus 569 ~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQ 583 (625)
T ss_pred CCC-chHHHHHHHhhh
Confidence 333 899999988873
No 290
>KOG1486|consensus
Probab=98.76 E-value=2.1e-07 Score=93.21 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=50.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~ 123 (592)
.-.-+|+++|.|.||||||+..++... -...|..|+.......+.+++..+.+ .|.||.-++
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQl--lDLPGIieG 122 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQL--LDLPGIIEG 122 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEE--ecCcccccc
Confidence 345799999999999999999998543 34678889988888888999976654 999998443
No 291
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.75 E-value=9.9e-08 Score=101.81 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=78.6
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
...+..|..++.+++++|+|+|+++- ..+.+....+..+.....-.++|++|++||.|+.... +..
T Consensus 195 r~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~K----l~~ 270 (342)
T smart00275 195 RSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEK----IKK 270 (342)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHH----hCC
Confidence 67788899999999999999999973 3455555555555554334678999999999998651 112
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----c-----CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----D-----WENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~-----~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+..++.+... ..+.+.+..+... . ..+-+..++|..-.++..+|+.+...+...
T Consensus 271 ~~l~~~fp~y~g------------~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 271 VPLVDYFPDYKG------------PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred CchhccCCCCCC------------CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 222222222211 1233444433221 1 123356788999999999999988887654
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.73 E-value=1.9e-07 Score=100.16 Aligned_cols=142 Identities=14% Similarity=0.148 Sum_probs=78.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC----C-------------CCCCccC---ceeeeEE---EEEee---CCeEEEEEE
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN----T-------------FSPKYKR---TIEEMHH---EDFSM---NGVHLKLDI 114 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~----~-------------f~~~~~~---Tt~d~~~---~~v~v---dg~~v~L~I 114 (592)
-.+-|.|+|+.++|||||+|+|++. . .++.... ||.+... +-+.+ ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999976 2 2222233 3333332 22332 566677888
Q ss_pred EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhc--cccccCcchhHHHHHhhh-cCCc
Q psy1524 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSL--AMTCSTNEFPAMRALSIS-SADA 191 (592)
Q Consensus 115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~-~AD~ 191 (592)
+||+|......++. .. ... ..+=..+++... +..|.. --....+. .+|+
T Consensus 96 IDcvG~~v~GalG~---~r-------------~~k--------~RmV~TPW~d~~IPF~~AAe----iGT~kVI~dhstI 147 (492)
T TIGR02836 96 VDCVGYTVKGALGY---ME-------------EDK--------PRMVSTPWYDYEIPFEEAAE----IGTRKVIQEHSTI 147 (492)
T ss_pred EECCCcccCCCccc---ee-------------ccc--------cccccCCcccccCchhhhhh----hhHHHHHHhcCcE
Confidence 99999843222110 00 000 000011111100 000100 01122345 7999
Q ss_pred EEEEE-eCC--C--cCCHH-HHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524 192 FILVY-AID--D--PNSFE-EIRLIRDHIFETKASTAVPIVVVGNKSDL 234 (592)
Q Consensus 192 iIlVy-Dvs--d--~~Sfe-~l~~~l~~L~~~~~~~~~PIILVgNK~DL 234 (592)
.|+|. |.+ + ++.+. .-..++.+|++. ++|+|+|.||+|-
T Consensus 148 givVtTDgsi~dI~Re~y~~aEe~~i~eLk~~----~kPfiivlN~~dp 192 (492)
T TIGR02836 148 GVVVTTDGTITDIPREDYVEAEERVIEELKEL----NKPFIILLNSTHP 192 (492)
T ss_pred EEEEEcCCCccccccccchHHHHHHHHHHHhc----CCCEEEEEECcCC
Confidence 99998 653 1 22333 334577777665 7999999999993
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.73 E-value=7.3e-08 Score=102.13 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=55.0
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
...||.+++|.+.... ++++.....+.+. .-|+|.||+|+......
T Consensus 167 ~~~aD~vlvv~~p~~g---d~iq~~k~gi~E~------aDIiVVNKaDl~~~~~a------------------------- 212 (332)
T PRK09435 167 AGMVDFFLLLQLPGAG---DELQGIKKGIMEL------ADLIVINKADGDNKTAA------------------------- 212 (332)
T ss_pred HHhCCEEEEEecCCch---HHHHHHHhhhhhh------hheEEeehhcccchhHH-------------------------
Confidence 4569999999763333 3443322222222 23899999998764100
Q ss_pred CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
.-...+....... .|..+++.+||+++.||+++++.+.+.+...+
T Consensus 213 ----~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 213 ----RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred ----HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 0001111111111 24467999999999999999999999875433
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.71 E-value=2.4e-07 Score=93.12 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=66.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.....|+|+|.+|+|||||++.++...-........+. + ..+..++ ..+.++||||.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i-~i~~~~~--~~i~~vDtPg~------------------- 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I-TVVTGKK--RRLTFIECPND------------------- 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E-EEEecCC--ceEEEEeCCch-------------------
Confidence 34578999999999999999999854211111111111 1 1111233 34566999987
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
. ..+.. ..+.+|++++|+|++....... ..++..+..
T Consensus 94 ------------------------------------~--~~~l~-~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~--- 130 (225)
T cd01882 94 ------------------------------------I--NAMID-IAKVADLVLLLIDASFGFEMET-FEFLNILQV--- 130 (225)
T ss_pred ------------------------------------H--HHHHH-HHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH---
Confidence 1 11111 2577999999999986554332 223333333
Q ss_pred CCCCC-EEEEEeCCCCccc
Q psy1524 220 STAVP-IVVVGNKSDLADE 237 (592)
Q Consensus 220 ~~~~P-IILVgNK~DL~~~ 237 (592)
.+.| +|+|.||+|+..+
T Consensus 131 -~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 131 -HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred -cCCCeEEEEEeccccCCc
Confidence 2467 4559999998743
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.67 E-value=3.5e-07 Score=90.99 Aligned_cols=179 Identities=16% Similarity=0.234 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc---cCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKY---KRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~---~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
++|+|+|.+|+||||++|.+++....... .+.+.........+++..+.+ +||||..+.....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~V--IDTPGl~d~~~~~------------ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTV--IDTPGLFDSDGSD------------ 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEE--EE--SSEETTEEH------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEE--EeCCCCCCCcccH------------
Confidence 58999999999999999999977543221 222334444455788876654 9999982211100
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
. .+. ............+.+++|+|+.++ +-+-.+. ..+..+.+..+
T Consensus 67 --~-~~~-----------------------------~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG 112 (212)
T PF04548_consen 67 --E-EII-----------------------------REIKRCLSLCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFG 112 (212)
T ss_dssp --H-HHH-----------------------------HHHHHHHHHTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHC
T ss_pred --H-HHH-----------------------------HHHHHHHHhccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHcc
Confidence 0 000 011111122345789999999988 4343222 23344444422
Q ss_pred C-CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC----
Q psy1524 220 S-TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK---- 294 (592)
Q Consensus 220 ~-~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk---- 294 (592)
. --.-+|||.|..|...... +..++. .-.......+.+ ..+..|..++.+
T Consensus 113 ~~~~k~~ivvfT~~d~~~~~~--------~~~~l~----------------~~~~~~l~~li~-~c~~R~~~f~n~~~~~ 167 (212)
T PF04548_consen 113 EEIWKHTIVVFTHADELEDDS--------LEDYLK----------------KESNEALQELIE-KCGGRYHVFNNKTKDK 167 (212)
T ss_dssp GGGGGGEEEEEEEGGGGTTTT--------HHHHHH----------------HHHHHHHHHHHH-HTTTCEEECCTTHHHH
T ss_pred HHHHhHhhHHhhhcccccccc--------HHHHHh----------------ccCchhHhHHhh-hcCCEEEEEeccccch
Confidence 1 1236889999888665410 000000 000111233333 234457766666
Q ss_pred --CCccHHHHHHHHHHHHHHhc
Q psy1524 295 --DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 --tg~gVeeLf~~Li~~i~~~~ 314 (592)
....+.+||+.+-+.+....
T Consensus 168 ~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 168 EKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHcC
Confidence 33568888888888776654
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.65 E-value=5e-07 Score=105.57 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccC----------------cee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKR----------------TIE-EMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~----------------Tt~-d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...-+|+|+|..++|||||+.+|+.. ........ |+. ....-.+..++..+.++|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 34568999999999999999999842 11110000 010 001111223445677888999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
..|.......+..+|++|+|+|+..
T Consensus 98 -------------------------------------------------------~df~~~~~~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 98 -------------------------------------------------------VDFGGDVTRAMRAVDGAIVVVDAVE 122 (731)
T ss_pred -------------------------------------------------------cChHHHHHHHHHhcCEEEEEEECCC
Confidence 5565566667889999999999887
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
...... ...+..+.+ .+.|+|++.||+|+..
T Consensus 123 g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 123 GVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence 643322 223333322 2468899999999864
No 297
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=100.47 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...++++++|...+|||||+-||+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly 29 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLY 29 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHH
Confidence 5679999999999999999999984
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.64 E-value=2.7e-07 Score=96.66 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=54.6
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
...+|.++++-+ +.+-+++..+...+ .++|.++|+||+|+......
T Consensus 145 ~~~aD~i~vv~~---~~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~------------------------- 190 (300)
T TIGR00750 145 ANMADTFVVVTI---PGTGDDLQGIKAGL------MEIADIYVVNKADGEGATNV------------------------- 190 (300)
T ss_pred HHhhceEEEEec---CCccHHHHHHHHHH------hhhccEEEEEcccccchhHH-------------------------
Confidence 556788888743 34445555544433 24678999999999754100
Q ss_pred CCCCCCChH---HHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 266 GTPDQVPYD---TTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 266 ~~~r~Vs~e---e~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
..+... ....+... .+..++++|||++|.||+++++++.+...
T Consensus 191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000000 00111111 23346899999999999999999998754
No 299
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.61 E-value=3e-07 Score=86.86 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=36.3
Q ss_pred chhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCC
Q psy1524 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKS 232 (592)
Q Consensus 177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~ 232 (592)
....+...++..+|++|+|.+++...+-.+...+.+.+.. ....+|+|.||+
T Consensus 117 ~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 117 EHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp TTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred hhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 3346777888999999999999886655555554444433 344599999995
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=2.1e-08 Score=101.74 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=46.4
Q ss_pred cCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccc--cccC--CCCcccccCCCCCccccc
Q psy1524 188 SADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQ--VDLT--GGPFQTYLSGLPDSVCAH 262 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~ 262 (592)
..-++|+++|+..-.+-... ..++..+.-. ...+.|.|.|.||+|+..+... .+.. .+.+...+.
T Consensus 122 ~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~--------- 191 (238)
T PF03029_consen 122 GRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLE--------- 191 (238)
T ss_dssp ---EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHH---------
T ss_pred cceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHH---------
Confidence 45688999997654442222 2222222111 1247899999999999873100 0000 000000000
Q ss_pred cCCCCCCCCChHHHHHHHhh---cCCC-eEEEcccCCCccHHHHHHHHHHHH
Q psy1524 263 QISGTPDQVPYDTTESVVQV---DWEN-GFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 263 ~~~~~~r~Vs~ee~~~la~~---~~~~-~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.. .......++.. .... .++.+|+++++++++++..+-+.+
T Consensus 192 --~~-----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 192 --SD-----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp --T------HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred --HH-----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 00 01111122221 2333 799999999999999998876654
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.59 E-value=7.2e-08 Score=95.40 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT 267 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (592)
..+..+.|+|+++..... ... ..+ ...|.++|+||+|+...
T Consensus 123 ~~~~~i~Vvd~~~~d~~~--~~~-~~~------~~~a~iiv~NK~Dl~~~------------------------------ 163 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKP--LKY-PGM------FKEADLIVINKADLAEA------------------------------ 163 (207)
T ss_pred ccCeEEEEEecCcccchh--hhh-HhH------HhhCCEEEEEHHHcccc------------------------------
Confidence 356667889987654311 111 111 24578999999999753
Q ss_pred CCCCChHHHHHHHh-hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 268 PDQVPYDTTESVVQ-VDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 268 ~r~Vs~ee~~~la~-~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....++.....+ .....+++++||++|.||+++|+++.+..
T Consensus 164 -~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 -VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred -chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 1111122222222 22357799999999999999999998753
No 302
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.56 E-value=3e-07 Score=108.84 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
..|.......++.+|++|+|+|+.+.-...... .+..+. ..++|+|++.||+|+.
T Consensus 109 ~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHH----HCCCCEEEEEECCccc
Confidence 667666677789999999999998765433322 233332 3478999999999998
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=98.56 E-value=3.5e-07 Score=108.12 Aligned_cols=116 Identities=15% Similarity=0.216 Sum_probs=74.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee---------------eeEEEEEeeC--------CeEEEEEE
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE---------------EMHHEDFSMN--------GVHLKLDI 114 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~---------------d~~~~~v~vd--------g~~v~L~I 114 (592)
+...+|+|+|..++|||||+++|+.. ........++. +.....+..+ +..+.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34459999999999999999999852 11111111100 0000111222 22567888
Q ss_pred EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL 194 (592)
Q Consensus 115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl 194 (592)
+||||+ .+|..-....++.+|++|+
T Consensus 97 iDtPG~-------------------------------------------------------~~f~~~~~~al~~~D~ail 121 (836)
T PTZ00416 97 IDSPGH-------------------------------------------------------VDFSSEVTAALRVTDGALV 121 (836)
T ss_pred EcCCCH-------------------------------------------------------HhHHHHHHHHHhcCCeEEE
Confidence 999999 4455555666889999999
Q ss_pred EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
|+|+++.-.... ...+..+.+ .++|+|++.||+|+.
T Consensus 122 Vvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 122 VVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999987644332 233333333 368999999999997
No 304
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.55 E-value=1e-06 Score=99.36 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=76.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC-CC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
-+..++|+|+|.+|||||||+|.+++.. +. ....+.+.........+++.. +.|+||||..+....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~d---------- 182 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASD---------- 182 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccc----------
Confidence 4566899999999999999999999875 33 222233332322333456644 556999999321100
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
.. ..+........++. ..|++|+|..++.......-..++..|
T Consensus 183 -----q~------------------------------~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~I 227 (763)
T TIGR00993 183 -----QS------------------------------KNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTI 227 (763)
T ss_pred -----hH------------------------------HHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHH
Confidence 00 00111111222333 589999999886443322223455656
Q ss_pred HHhhcCC-CCCEEEEEeCCCCccc
Q psy1524 215 FETKAST-AVPIVVVGNKSDLADE 237 (592)
Q Consensus 215 ~~~~~~~-~~PIILVgNK~DL~~~ 237 (592)
.+..+.. -.-+|||.|..|....
T Consensus 228 q~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 228 TDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhCHHhHcCEEEEEeCCccCCC
Confidence 5553211 2368999999998864
No 305
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.1e-06 Score=91.03 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEee------------C----CeEEEEEEEeCCCCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSM------------N----GVHLKLDILDTSGEQSG 123 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~v------------d----g~~v~L~I~DT~G~~~~ 123 (592)
.++|.|||.||||||||+|.++..... .+|+.+|-+.-...+.+ . -....++|+|.+|...+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 479999999999999999999977643 68888776554444433 1 12456888999998543
No 306
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.51 E-value=5.6e-07 Score=93.10 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=43.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE 120 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~ 120 (592)
|+|||.+|||||||+|+|++... +.+|..||.+.....+.+.+.. ..++|+|+||.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl 72 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGL 72 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCc
Confidence 57999999999999999997754 4677777776666666664432 24788999998
No 307
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=4.4e-07 Score=88.26 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=64.1
Q ss_pred hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCC
Q psy1524 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPD 257 (592)
Q Consensus 178 ~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~ 257 (592)
|..+...+++++|++|+|+|+++...- |...+... ..+.|+|+|+||+|+....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~------------------- 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKD------------------- 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCC-------------------
Confidence 577888899999999999999886421 12222221 2468999999999986431
Q ss_pred ccccccCCCCCCCCChHHHHHHH-----hhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 258 SVCAHQISGTPDQVPYDTTESVV-----QVD--WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 258 ~~~~~~~~~~~r~Vs~ee~~~la-----~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
...+....+. +.. ....++++||++|.|++++++.+.+.+
T Consensus 78 -------------~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 78 -------------KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -------------CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 1112222222 111 112589999999999999999998876
No 308
>KOG1487|consensus
Probab=98.47 E-value=4.7e-07 Score=91.10 Aligned_cols=197 Identities=17% Similarity=0.140 Sum_probs=121.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC--CcccccccccCCCCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG--KGLKCGAVLWGPKKW 138 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~--~~~~~~~~~~~~~~~ 138 (592)
.-+|-++|-|.||||||+..+++-. -+..|..|+.......+.+++.+ +++.|.||.-++ ++...+.+++...+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeec
Confidence 3489999999999999999999553 34678888876666666677754 556999998654 444445555544433
Q ss_pred C----------------------chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524 139 G----------------------LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY 196 (592)
Q Consensus 139 ~----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy 196 (592)
+ +|.++++-......+....+-.-.-.+.. ..-..+..+++...|-.....+.+=|
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~--~~LdlD~~rsil~eyR~hsAdi~Lr~ 214 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG--THLDLDLQRSILSEYRIHSADIALRF 214 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeec--chhhHHHHHHHHHHhhhcchheeeec
Confidence 3 67777776666555554433332222222 00011222333333333344455668
Q ss_pred eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH
Q psy1524 197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276 (592)
Q Consensus 197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~ 276 (592)
|+|-.+ ++..+... ...+|.+.+.||+|-..- |+.
T Consensus 215 DaT~Dd-------LIdvVegn--r~yVp~iyvLNkIdsISi------------------------------------EEL 249 (358)
T KOG1487|consen 215 DATADD-------LIDVVEGN--RIYVPCIYVLNKIDSISI------------------------------------EEL 249 (358)
T ss_pred Ccchhh-------hhhhhccC--ceeeeeeeeecccceeee------------------------------------ecc
Confidence 877432 33333221 236899999999996532 222
Q ss_pred HHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 277 ~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.-+ ......+.+||-++.|++++++-+.+.+
T Consensus 250 dii---~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 250 DII---YTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred cee---eeccceeecccccccchHHHHHHHhhcc
Confidence 211 2233478999999999999999888776
No 309
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.45 E-value=2.1e-06 Score=87.17 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=37.3
Q ss_pred chhHHHHHhhh-cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 177 EFPAMRALSIS-SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 177 ~~~~l~~~~~~-~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
....+...|++ ..+++++|+|++..-+-.+...+...+ .....++|+|+||+|..+.
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEECCCCCCc
Confidence 34456667787 456999999986533322322333333 2347899999999998865
No 310
>KOG1144|consensus
Probab=98.43 E-value=9.6e-07 Score=99.08 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=108.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEE-------------eeCCe----EEEEEEEeCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-------------SMNGV----HLKLDILDTSGE 120 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v-------------~vdg~----~v~L~I~DT~G~ 120 (592)
.+-+..-|||+|.-..|||-|+..+.+.........++...+..++ .-+++ ---+.++||||+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 3456678999999999999999999875444333333321111111 00111 113456999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
|.|..++......||++|+|+|+..
T Consensus 551 -------------------------------------------------------EsFtnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 551 -------------------------------------------------------ESFTNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred -------------------------------------------------------hhhhhhhhccccccceEEEEeehhc
Confidence 8999999999999999999999976
Q ss_pred c---CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH--
Q psy1524 201 P---NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-- 275 (592)
Q Consensus 201 ~---~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-- 275 (592)
. .+.+.+. .|+ ..++|+||++||+|....... .|+.............+..+.
T Consensus 576 GlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~--------------~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 576 GLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKS--------------CPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred cCCcchhHHHH----HHH----hcCCCeEEeehhhhhhccccc--------------CCCchHHHHHHHhhHHHHHHHHH
Confidence 4 4444433 122 358999999999998765211 111111111111111111111
Q ss_pred -----HHHHHhhcCC-------------CeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 276 -----TESVVQVDWE-------------NGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 276 -----~~~la~~~~~-------------~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+|+....+ +.++++||.+|+||.+|+-.|++.....
T Consensus 634 R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 1122221111 2378999999999999999998876443
No 311
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.42 E-value=9.6e-07 Score=82.96 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=62.4
Q ss_pred hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCc
Q psy1524 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDS 258 (592)
Q Consensus 179 ~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~ 258 (592)
+.+....++++|++|+|+|++++...... .+...+ ...++|+++|+||+|+....
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~----~~~~~p~iiv~NK~Dl~~~~-------------------- 57 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV----LELGKKLLIVLNKADLVPKE-------------------- 57 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH----HhCCCcEEEEEEhHHhCCHH--------------------
Confidence 45667778889999999999886543321 122212 12368999999999986430
Q ss_pred cccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 259 VCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 259 ~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.. .....+.. ....+++.+||+++.|++++++.+.+.+
T Consensus 58 -----------~~--~~~~~~~~-~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 58 -----------VL--EKWKSIKE-SEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred -----------HH--HHHHHHHH-hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 00 11111222 2345789999999999999999998776
No 312
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=9.8e-07 Score=91.30 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=64.2
Q ss_pred hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524 187 SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG 266 (592)
Q Consensus 187 ~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 266 (592)
.-.|+.|+|++++.+.---.-...+..|.-. .-..||+|-||+||...++.
T Consensus 108 AlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~A-------------------------- 158 (415)
T COG5257 108 ALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERA-------------------------- 158 (415)
T ss_pred hhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHH--------------------------
Confidence 3469999999998753322223333323221 23578999999999976321
Q ss_pred CCCCCChHHHHHHHhhcC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 267 TPDQVPYDTTESVVQVDW--ENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 267 ~~r~Vs~ee~~~la~~~~--~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.-+++++..|.+-.. +.+++++||..+.||+-+++.|.+.+
T Consensus 159 ---lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 159 ---LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred ---HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 124567777766433 56899999999999999999999888
No 313
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.39 E-value=7.7e-07 Score=92.52 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
.++|+|+|.+|+|||||||.|++....... ..++. ......+.-++..+.|+|+||||+++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 589999999999999999999976544221 11111 22223334478899999999999843
No 314
>KOG3905|consensus
Probab=98.37 E-value=5.2e-06 Score=86.01 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=24.5
Q ss_pred cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
..+...|.+|+|...||+-+...|+..+
T Consensus 262 r~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 262 RYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred HcCceeEEeecccccchHHHHHHHHHHh
Confidence 4566789999999999999999998877
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.36 E-value=3.3e-07 Score=95.13 Aligned_cols=28 Identities=21% Similarity=0.098 Sum_probs=24.0
Q ss_pred cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
....+++++||++|+|+++++++|..+.
T Consensus 261 np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 261 NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3467799999999999999999997643
No 316
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.34 E-value=2.6e-06 Score=91.31 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...++|+|+|.+|+|||||||.|.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999999974
No 317
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.32 E-value=7.6e-06 Score=90.57 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=23.9
Q ss_pred cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 283 DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.++...|.||++...|++-|+..|...+
T Consensus 236 ~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 236 KYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred hcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 4567788899999999999998877776
No 318
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=2e-06 Score=92.03 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=66.1
Q ss_pred HHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCc
Q psy1524 180 AMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDS 258 (592)
Q Consensus 180 ~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~ 258 (592)
.+....+.++|.+++|+|++++. ++..+..|+..+. ..++|+|||+||+||.+..
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~-------------------- 136 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPT-------------------- 136 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChH--------------------
Confidence 34445589999999999999876 5556676666542 2478999999999997541
Q ss_pred cccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 259 VCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 259 ~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.. +....... .++..++.+||++|.|+++|++.+...+
T Consensus 137 -----------~~--~~~~~~~~-~~g~~v~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 137 -----------EQ--QQWQDRLQ-QWGYQPLFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred -----------HH--HHHHHHHH-hcCCeEEEEEcCCCCCHHHHhhhhccce
Confidence 00 11111112 3456799999999999999999887644
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.30 E-value=1.2e-06 Score=90.32 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=58.4
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
..-+|.+++|.=..-.+...-++.=+.++.. |+|.||.|.......+ ..+
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~--------r~l------------- 211 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAA--------REL------------- 211 (323)
T ss_pred hhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHH--------HHH-------------
Confidence 4458898888766555555555554444433 6899999976542111 000
Q ss_pred CCCCCCChHHHHH-----HHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 266 GTPDQVPYDTTES-----VVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 266 ~~~r~Vs~ee~~~-----la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+.. .....|..+++.+||.+|+||++|++.+.+.....
T Consensus 212 --------~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 212 --------RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred --------HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 11111 22335778899999999999999999998876443
No 320
>KOG0468|consensus
Probab=98.29 E-value=2.6e-06 Score=94.71 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=82.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee----------------eeE--EEEE---eeCCeEEEEEEEe
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE----------------EMH--HEDF---SMNGVHLKLDILD 116 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~----------------d~~--~~~v---~vdg~~v~L~I~D 116 (592)
......+|+++|.-..|||+|+.-|+.....+-+..+-. ... ..++ ..+++.+.++|.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 335668999999999999999999997654422111110 000 0111 1267889999999
Q ss_pred CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY 196 (592)
Q Consensus 117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy 196 (592)
|||+ -.|..-....++-+|++++|+
T Consensus 204 TPGH-------------------------------------------------------VnF~DE~ta~l~~sDgvVlvv 228 (971)
T KOG0468|consen 204 TPGH-------------------------------------------------------VNFSDETTASLRLSDGVVLVV 228 (971)
T ss_pred CCCc-------------------------------------------------------ccchHHHHHHhhhcceEEEEE
Confidence 9999 445555566688899999999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
|+.+.-++..-. +.++....+.|+++|.||+|...
T Consensus 229 Dv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 229 DVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRLI 263 (971)
T ss_pred EcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHHH
Confidence 998876654322 22222345789999999999764
No 321
>KOG0461|consensus
Probab=98.28 E-value=1.3e-05 Score=83.69 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=39.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC----CCCCCccCce----eeeEEEEEee-------CCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN----TFSPKYKRTI----EEMHHEDFSM-------NGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~----~f~~~~~~Tt----~d~~~~~v~v-------dg~~v~L~I~DT~G~ 120 (592)
+..+++.++|.-.+|||||..++..- .|......+. .|.-...+.+ .+.+..+.++|+||+
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 34589999999999999999999832 3332222221 1222222222 456678889999999
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.26 E-value=3.1e-06 Score=82.46 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=53.5
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCC
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTP 268 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (592)
.+.-|+|+|++..+-. . .+-...... -=++|.||.||...
T Consensus 118 d~~~v~VidvteGe~~---P-----~K~gP~i~~-aDllVInK~DLa~~------------------------------- 157 (202)
T COG0378 118 DHLRVVVIDVTEGEDI---P-----RKGGPGIFK-ADLLVINKTDLAPY------------------------------- 157 (202)
T ss_pred hceEEEEEECCCCCCC---c-----ccCCCceeE-eeEEEEehHHhHHH-------------------------------
Confidence 3488999999876421 0 000000011 35799999999865
Q ss_pred CCCChHHHHHHHh-hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 269 DQVPYDTTESVVQ-VDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 269 r~Vs~ee~~~la~-~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
-..+.+....-++ .....+++++|+++|+|++++++++...+
T Consensus 158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 2333444444433 34577899999999999999999887654
No 323
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.7e-06 Score=88.73 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=63.7
Q ss_pred hhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524 185 SISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ 263 (592)
Q Consensus 185 ~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (592)
.+.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+||.++.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~------------------------- 125 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE------------------------- 125 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-------------------------
Confidence 478899999999999998 88888888776644 368999999999996531
Q ss_pred CCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524 264 ISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307 (592)
Q Consensus 264 ~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li 307 (592)
.......... ..+.+++.+||+++.|+++++..+.
T Consensus 126 --------~~~~~~~~~~-~~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 126 --------EEELELVEAL-ALGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred --------HHHHHHHHHH-hCCCeEEEEECCCCccHHHHHhhhc
Confidence 0011112222 3467899999999999999987653
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.22 E-value=1.4e-06 Score=88.59 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=55.1
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
..-+|.+++|.-..-.+...-++.=+.++ .=|+|.||+|+....+..
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~------------------------ 186 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTV------------------------ 186 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHH------------------------
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHH------------------------
Confidence 45589999999877666655555444444 337899999976542111
Q ss_pred CCCCCCChHHHHHHHh---hcCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 266 GTPDQVPYDTTESVVQ---VDWENGFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~---~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
.....+..+.. ..|..+++.|||.++.||+++++.|.+......
T Consensus 187 -----~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~ 233 (266)
T PF03308_consen 187 -----RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK 233 (266)
T ss_dssp -----HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00112222222 235578999999999999999999888654443
No 325
>KOG0458|consensus
Probab=98.21 E-value=9.1e-06 Score=89.89 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...+.++++|...+|||||+-+++.
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLy 199 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLY 199 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHH
Confidence 3679999999999999999999884
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.20 E-value=4e-06 Score=90.17 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred CcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524 175 TNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG 254 (592)
Q Consensus 175 ~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~ 254 (592)
.+.|..+...++..++++++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k----------------- 105 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK----------------- 105 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC-----------------
Confidence 3788899999999999999999997754 22445555442 36799999999999753
Q ss_pred CCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHH
Q psy1524 255 LPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 255 ~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
.+..+....+ ++ ..+. .++++||++|.|++++|+.+.+.
T Consensus 106 ---------------~~~~~~~~~~l~~~~k-~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 106 ---------------SVNLSKIKEWMKKRAK-ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ---------------CCCHHHHHHHHHHHHH-HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222333322 33 2222 48999999999999999998654
No 327
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.18 E-value=1.2e-05 Score=86.73 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCce------------e-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTI------------E-EMHHEDFSMNGVHLKLDILDTSGEQSGKGL 126 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt------------~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~ 126 (592)
.-+|+||-.-.-|||||+..|+.. .|.+...-.- + ....+..-++...+.++|+||||+.+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD---- 80 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD---- 80 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC----
Confidence 358999999999999999999943 4442111100 0 12222223344447788899999932
Q ss_pred cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524 127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE 206 (592)
Q Consensus 127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~ 206 (592)
|---....+.-.|++++++|+.+..- -.
T Consensus 81 ---------------------------------------------------FGGEVERvl~MVDgvlLlVDA~EGpM-PQ 108 (603)
T COG1217 81 ---------------------------------------------------FGGEVERVLSMVDGVLLLVDASEGPM-PQ 108 (603)
T ss_pred ---------------------------------------------------ccchhhhhhhhcceEEEEEEcccCCC-Cc
Confidence 22222223556899999999987421 11
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----- 281 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----- 281 (592)
-+..+....+ .+.+-|+|.||+|....... .|-.+....|..
T Consensus 109 TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~-----------------------------~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 109 TRFVLKKALA----LGLKPIVVINKIDRPDARPD-----------------------------EVVDEVFDLFVELGATD 155 (603)
T ss_pred hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHH-----------------------------HHHHHHHHHHHHhCCCh
Confidence 2222222222 35677889999998876321 111122222221
Q ss_pred hcCCCeEEEcccCCCc----------cHHHHHHHHHHHH
Q psy1524 282 VDWENGFVEASAKDNT----------NITQVFKELLVQA 310 (592)
Q Consensus 282 ~~~~~~~~EvSAktg~----------gVeeLf~~Li~~i 310 (592)
.....+++..||+.|. ++.-||+.|++.+
T Consensus 156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 1245678899998775 5778888888877
No 328
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.15 E-value=4.1e-06 Score=77.75 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSP--KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~--~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
+++++|.+|||||||+|++.+..... ....++ .....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876642 222222 2334455554 3567999997
No 329
>KOG0082|consensus
Probab=98.15 E-value=3.6e-05 Score=81.81 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=70.5
Q ss_pred hHHHHHhhhcCCcEEEEEeCCCcCC----------HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCc
Q psy1524 179 PAMRALSISSADAFILVYAIDDPNS----------FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248 (592)
Q Consensus 179 ~~l~~~~~~~AD~iIlVyDvsd~~S----------fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~ 248 (592)
+.-|.+++.++++||||+++++-+- ..+...+++.+.+...=.+.++||.+||.||...
T Consensus 209 RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE----------- 277 (354)
T KOG0082|consen 209 RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEE----------- 277 (354)
T ss_pred hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHH-----------
Confidence 3445567999999999999876321 1122224444444433457899999999999875
Q ss_pred ccccCCCCCccccccCCCCCCCCChHHHHHHHhh--------c-CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--------D-WENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--------~-~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
.+...|.+.+-.+-.+ .-+.+++..+.+. . ..+-+..+.|..-.||+.+|..+.+.+...
T Consensus 278 --Ki~~~~~~~~Fpdy~G---~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 278 --KIKKVPLTDCFPDYKG---VNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred --HhccCchhhhCcCCCC---CCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 1222222222222211 1233344433221 1 122245678888899999999999988543
No 330
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=4.4e-06 Score=87.56 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=59.9
Q ss_pred hhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (592)
..++|++++|+|++++.++..+ ..|+..+.. .++|+++|+||+||.++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~-------------------------- 127 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDL-------------------------- 127 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCH--------------------------
Confidence 6889999999999988765554 556555433 478999999999996330
Q ss_pred CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHH
Q psy1524 265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL 306 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~L 306 (592)
. .........+ ..+.+++++||+++.|++++++.+
T Consensus 128 -----~-~~~~~~~~~~-~~g~~v~~vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 128 -----E-EARELLALYR-AIGYDVLELSAKEGEGLDELKPLL 162 (298)
T ss_pred -----H-HHHHHHHHHH-HCCCeEEEEeCCCCccHHHHHhhc
Confidence 0 0111222222 345689999999999999998776
No 331
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.3e-05 Score=84.09 Aligned_cols=153 Identities=26% Similarity=0.266 Sum_probs=89.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC------------CCccCcee----------------------eeEEEEEee
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS------------PKYKRTIE----------------------EMHHEDFSM 105 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~------------~~~~~Tt~----------------------d~~~~~v~v 105 (592)
...++++.+|.-.=||||||-||+.+.-. +....|.+ |...+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999965211 11111211 222222222
Q ss_pred CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS 185 (592)
Q Consensus 106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 185 (592)
+.. ++.|-||||+ +.|-.-...-
T Consensus 84 ~KR--kFIiADTPGH-------------------------------------------------------eQYTRNMaTG 106 (431)
T COG2895 84 EKR--KFIIADTPGH-------------------------------------------------------EQYTRNMATG 106 (431)
T ss_pred ccc--eEEEecCCcH-------------------------------------------------------HHHhhhhhcc
Confidence 333 4556999999 5544433344
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
...||+.|+++|+... ......-+..|.... .-..+||+.||+||.+-++.. |
T Consensus 107 ASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~------F----------------- 159 (431)
T COG2895 107 ASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEV------F----------------- 159 (431)
T ss_pred cccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHH------H-----------------
Confidence 5679999999998432 222222223333332 234789999999998752210 0
Q ss_pred CCCCCCChHHHHHHHhhcC--CCeEEEcccCCCccHH
Q psy1524 266 GTPDQVPYDTTESVVQVDW--ENGFVEASAKDNTNIT 300 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~~~--~~~~~EvSAktg~gVe 300 (592)
..+ ..+-..++.... ...++++||..|.||-
T Consensus 160 ---~~I-~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 ---EAI-VADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ---HHH-HHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 001 112233444322 3469999999999985
No 332
>KOG2486|consensus
Probab=98.10 E-value=5.3e-06 Score=84.63 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=38.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
+.+....++++|.+|||||||||-++...... ...++.+.+.......-+.. +.++|.||.
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~ 193 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGY 193 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCc
Confidence 35677999999999999999999999765432 22223332222222222333 444999995
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.08 E-value=1.3e-05 Score=85.81 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=65.3
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
..++|.+++|++++...++..+..|+..+.. .++|+|||+||+||.+...
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~-------------------------- 167 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEG-------------------------- 167 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHH--------------------------
Confidence 5779999999999988899999998775532 4689999999999975410
Q ss_pred CCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
+.. ......... ..+.+++++||+++.|++++++.+...
T Consensus 168 ---~~~-~~~~~~~y~-~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 168 ---RAF-VNEQLDIYR-NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred ---HHH-HHHHHHHHH-hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 000 111111222 345689999999999999999888654
No 334
>KOG3886|consensus
Probab=98.01 E-value=7.5e-06 Score=81.43 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
-||+++|.+|+||||+=.-+..+.. ...-...+-|.....+.+-| .+.|++||.+|++. .+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~----------------fm 67 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEE----------------FM 67 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHH----------------HH
Confidence 4999999999999998766654432 22222222243333333322 26788899999910 00
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH---HHHHh
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD---HIFET 217 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~---~L~~~ 217 (592)
| .-+....+..+++.+++++|||++..+-..++..+-. .+.+
T Consensus 68 e----------------------------------n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~- 112 (295)
T KOG3886|consen 68 E----------------------------------NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ- 112 (295)
T ss_pred H----------------------------------HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh-
Confidence 0 0111123345788999999999988765555544433 3333
Q ss_pred hcCCCCCEEEEEeCCCCccc
Q psy1524 218 KASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~ 237 (592)
..+...|.+...|.||...
T Consensus 113 -~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 113 -NSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred -cCCcceEEEEEeechhccc
Confidence 4577889999999999865
No 335
>KOG1954|consensus
Probab=97.97 E-value=6.2e-05 Score=79.36 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=83.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC---ccCceeeeEEEEE-----eeCCeEE---------------------
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK---YKRTIEEMHHEDF-----SMNGVHL--------------------- 110 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~---~~~Tt~d~~~~~v-----~vdg~~v--------------------- 110 (592)
+...-|+++|.-..||||+|+.|+.+.|..- ..||+..+..... .+.|..+
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4456799999999999999999999988732 2344432221111 1111111
Q ss_pred ------------EEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcch
Q psy1524 111 ------------KLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178 (592)
Q Consensus 111 ------------~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 178 (592)
.++|+||||.-++.... .+-.-.|
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQr--------------------------------------------isR~ydF 171 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQR--------------------------------------------ISRGYDF 171 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhc--------------------------------------------ccccCCh
Confidence 36678888873221100 0111456
Q ss_pred hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 179 ~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.....-+..++|.||++||...-+--++.+..+..|+.+ .-.|-||.||.|..+.
T Consensus 172 ~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 172 TGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccccCH
Confidence 777888899999999999987655445555566655443 3457788999998765
No 336
>KOG2655|consensus
Probab=97.97 E-value=7.2e-05 Score=79.64 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=45.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCC--------c-cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK--------Y-KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~--------~-~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
+-..|.++++|++|.|||||||.|+...+..+ . ..|.. +.....+.-+|.++.|+++||||+++
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 34569999999999999999999986654422 1 11222 23333334488999999999999944
No 337
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=6.7e-05 Score=81.01 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
-|+..|.---|||||+..+.+..-. .....++.|.-.......+. .+.|+|.||+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh------------------- 60 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGH------------------- 60 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCc-------------------
Confidence 4667788889999999999965332 23344554544444444443 6677999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE 216 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~ 216 (592)
++|-.-.-..+...|.+++|+|.++. .+-+.+. +.+
T Consensus 61 ------------------------------------~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLd 99 (447)
T COG3276 61 ------------------------------------PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILD 99 (447)
T ss_pred ------------------------------------HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHH
Confidence 55544444456679999999999754 3333332 222
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.. .....++|.||+|..+..+. .++ ..+...... ....++|.+|+++|
T Consensus 100 ll--gi~~giivltk~D~~d~~r~----------------------------e~~-i~~Il~~l~-l~~~~i~~~s~~~g 147 (447)
T COG3276 100 LL--GIKNGIIVLTKADRVDEARI----------------------------EQK-IKQILADLS-LANAKIFKTSAKTG 147 (447)
T ss_pred hc--CCCceEEEEeccccccHHHH----------------------------HHH-HHHHHhhcc-cccccccccccccC
Confidence 21 23356999999999875210 000 111111111 23456899999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||++|-+.|...+.
T Consensus 148 ~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 148 RGIEELKNELIDLLE 162 (447)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999998873
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.95 E-value=2.1e-05 Score=74.13 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=36.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
..++|+++|.+|||||||+|+|.+.... .....+|... ..+..++ . +.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK-R--IYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC-C--EEEEECcCC
Confidence 3578999999999999999999976443 3444444321 2222332 2 446999994
No 339
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.95 E-value=8e-05 Score=78.88 Aligned_cols=63 Identities=22% Similarity=0.480 Sum_probs=45.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC----------ccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK----------YKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~----------~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
-..+.|+++|.+|.|||||+|.|++...... ..+|+. ..+...+.-++.++.|+++||||+++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 4569999999999999999999997644322 123333 23333344488899999999999954
No 340
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.91 E-value=7.5e-05 Score=80.18 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCe---------------EEEEEEEeCCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGV---------------HLKLDILDTSGEQ 121 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~---------------~v~L~I~DT~G~~ 121 (592)
+++.|||.+|||||||+|.+++... ..+|..||.+.....+.+.+. ...+++.|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv 78 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLV 78 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccc
Confidence 7999999999999999999997765 367777776665566655442 2356789999983
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.91 E-value=4e-05 Score=72.23 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524 185 SISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 185 ~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (592)
.+.+||++++|+|++++..-. ...+...+.. ...++|+|+|.||+|+.++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~~-------------------------- 55 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIFVLNKCDLVPTW-------------------------- 55 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--ccCCCCEEEEEEchhcCCHH--------------------------
Confidence 478899999999999874321 1222222222 13358999999999997541
Q ss_pred CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.+ ......+.+ ......+.+||+++.|++++++.+...+
T Consensus 56 -----~~-~~~~~~~~~-~~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 56 -----VT-ARWVKILSK-EYPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -----HH-HHHHHHHhc-CCcEEEEEeeccccccHHHHHHHHHHHH
Confidence 00 111222222 2223357899999999999998886654
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.91 E-value=2.4e-05 Score=74.95 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=38.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|+++|.+|||||||+|++.+..+. .....|+.+ ...+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45589999999999999999999987663 222233322 2223343 23567999996
No 343
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.0001 Score=85.29 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=77.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC---CccC-cee-----------eeE--EEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP---KYKR-TIE-----------EMH--HEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~---~~~~-Tt~-----------d~~--~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...-+|.|+|.-.+|||||..+++.. .... .... ++. ... ...+...+ .+.++|+||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 45679999999999999999999832 1111 0000 010 111 11222333 577888999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
-.|..-....++-+|++|+|+|+..
T Consensus 87 -------------------------------------------------------VDFt~EV~rslrvlDgavvVvdave 111 (697)
T COG0480 87 -------------------------------------------------------VDFTIEVERSLRVLDGAVVVVDAVE 111 (697)
T ss_pred -------------------------------------------------------cccHHHHHHHHHhhcceEEEEECCC
Confidence 4455555666888999999999987
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.-....-.-| ..+. ..++|.|++.||+|....
T Consensus 112 GV~~QTEtv~-rqa~----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 112 GVEPQTETVW-RQAD----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred CeeecHHHHH-HHHh----hcCCCeEEEEECcccccc
Confidence 6544333333 3332 347999999999998865
No 344
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.88 E-value=4.5e-05 Score=71.80 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=55.1
Q ss_pred CcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCC
Q psy1524 190 DAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD 269 (592)
Q Consensus 190 D~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 269 (592)
|++|+|+|++++.+.... ++.. ......++|+|+|+||+|+....
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p~IiVlNK~Dl~~~~------------------------------- 45 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKKLILVLNKADLVPKE------------------------------- 45 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcCCCCEEEEEechhcCCHH-------------------------------
Confidence 789999999988655432 2221 11123478999999999996441
Q ss_pred CCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 270 QVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 270 ~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.+ .+....+.. .....++.+||++|.|++++++.+.+..
T Consensus 46 ~~-~~~~~~~~~-~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 46 VL-RKWLAYLRH-SYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred HH-HHHHHHHHh-hCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 00 011112222 2345689999999999999999988765
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.87 E-value=3.3e-05 Score=74.64 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=38.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|+++|.+|||||||+|+|++.... .....+|.... .+.++. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeCC---CEEEEECcCC
Confidence 44589999999999999999999976542 34444444322 223332 3556999994
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.78 E-value=5.2e-05 Score=78.56 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=39.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|+|+|.+|||||||+|+|.+.... .....+|... ..+.++. .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 45689999999999999999999976543 3333444322 3344433 3467999998
No 347
>KOG1491|consensus
Probab=97.76 E-value=5.5e-05 Score=79.16 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=47.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee---------------CCeEEEEEEEeCCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM---------------NGVHLKLDILDTSGEQS 122 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v---------------dg~~v~L~I~DT~G~~~ 122 (592)
..+++.|||.+|||||||+|.|++... ..+++.+|-|.....+.+ ...+..++++|++|...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 458999999999999999999997755 467777776655555543 22356789999999843
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.76 E-value=0.0001 Score=70.54 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC 260 (592)
Q Consensus 181 l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (592)
.....+.+||++++|+|++++....+. .+.. . ..+.|+++|.||+|+.+..
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~--~~~k~~ilVlNK~Dl~~~~---------------------- 62 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----I--LGNKPRIIVLNKADLADPK---------------------- 62 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----H--hcCCCEEEEEehhhcCChH----------------------
Confidence 345568899999999999876543221 1111 1 1257999999999986430
Q ss_pred cccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 261 AHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 261 ~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.+ .....+.+ .....++.+||+++.|++++.+.+...+
T Consensus 63 ---------~~--~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 63 ---------KT--KKWLKYFE-SKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---------HH--HHHHHHHH-hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 00 11111111 1234578999999999999999988776
No 349
>KOG1547|consensus
Probab=97.75 E-value=0.00014 Score=72.92 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=46.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCC---------CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---------KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---------~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
-..|+|++||.+|.|||||+|.+....... .+..|++ ...+..+.-++.+..++++||||+++
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 467999999999999999999998553321 2333443 33344455588899999999999943
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.74 E-value=3.4e-05 Score=74.96 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC----------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF----------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f----------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
..+|+|+|.+|||||||+|+|.+... ......||.+.. .+.++. .+.|+||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI--KIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE--EEecCC---CCEEEeCcCC
Confidence 35899999999999999999996532 123334443322 233333 3567999995
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.72 E-value=8.8e-05 Score=77.33 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=39.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|+|+|.+|||||||+|+|++.... .....+|... ..+.+++ . +.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK-G--LELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC-c--EEEEECCCc
Confidence 45689999999999999999999987543 3333444332 2334443 2 456999998
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.69 E-value=0.0001 Score=69.22 Aligned_cols=56 Identities=32% Similarity=0.362 Sum_probs=36.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEE-EeeCCeEEEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED-FSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~-v~vdg~~v~L~I~DT~G~ 120 (592)
...+|+++|.+|||||||+|+|.+.... .+.++.+...... +..++ .+.||||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 4578999999999999999999965432 2333333222222 22333 4667999994
No 353
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00056 Score=73.87 Aligned_cols=117 Identities=16% Similarity=0.265 Sum_probs=76.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH--cCCCC--------CCccCcee-----------eeEEEEEeeCCeEEEEEEEeCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL--YNTFS--------PKYKRTIE-----------EMHHEDFSMNGVHLKLDILDTSG 119 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~--~~~f~--------~~~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~G 119 (592)
++-..+||--|.+|||||..+|+ ++.+. .....++. ...+...+++-..+.++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44578999999999999999988 33221 11111111 12333445555567788899999
Q ss_pred CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID 199 (592)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs 199 (592)
+ +.|+.-.-..+..+|.+|+|+|+.
T Consensus 91 H-------------------------------------------------------eDFSEDTYRtLtAvDsAvMVIDaA 115 (528)
T COG4108 91 H-------------------------------------------------------EDFSEDTYRTLTAVDSAVMVIDAA 115 (528)
T ss_pred c-------------------------------------------------------cccchhHHHHHHhhheeeEEEecc
Confidence 9 445444444567799999999987
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..-.-..+ .++ +.+...++||+-..||.|....
T Consensus 116 KGiE~qT~-KLf----eVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 116 KGIEPQTL-KLF----EVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred cCccHHHH-HHH----HHHhhcCCceEEEeeccccccC
Confidence 65432222 222 3333468999999999997654
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=0.0001 Score=78.20 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=38.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|.|||.+|||||||||+|++.... ...+.+|.. ...+.++.. +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~--~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKG--IQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecc--eEEEEcCCC---eEEecCCCc
Confidence 34578999999999999999999977553 333333332 222333332 556999998
No 355
>KOG0448|consensus
Probab=97.59 E-value=0.00035 Score=78.83 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...||+|.|+.++||||++|+++..... +...++|.-+ .....-+|....+.+=++.+. -+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF-~~VegadG~e~vl~~~~s~ek-----------------~d 169 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCF-LEVEGADGAEAVLATEGSEEK-----------------ID 169 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceee-eeecccCCcceeeccCCCccc-----------------cc
Confidence 4579999999999999999999977665 4444444322 111122443333221111111 00
Q ss_pred chhHH-HHHhhccCC----------ccccccccCcchhhhccccc---cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524 140 LDKVC-LRRALNQRP----------MAYKTDVQLPSKLTSLAMTC---STNEFPAMRALSISSADAFILVYAIDDPNSFE 205 (592)
Q Consensus 140 ~e~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe 205 (592)
+..+. +-.++...+ .-.+.+-.++.....+.+.. ...++.+-...+..+||++|+|..+-+.-+..
T Consensus 170 ~~ti~~~~haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s 249 (749)
T KOG0448|consen 170 MKTINQLAHALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS 249 (749)
T ss_pred HHHHhHHHHhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH
Confidence 00010 112222211 01111122333333333432 33455566677889999999999876654443
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+-..+.. . ...++-|.++-||.|...+
T Consensus 250 ek~Ff~~-v----s~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 250 EKQFFHK-V----SEEKPNIFILNNKWDASAS 276 (749)
T ss_pred HHHHHHH-h----hccCCcEEEEechhhhhcc
Confidence 3332222 1 2235667788888898755
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.55 E-value=0.00016 Score=67.09 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=35.0
Q ss_pred hhhcCCcEEEEEeCCCcCCHH--HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 185 SISSADAFILVYAIDDPNSFE--EIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 185 ~~~~AD~iIlVyDvsd~~Sfe--~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.+.++|++++|+|+.++.+.. .+..++. .. ..++|+++|+||+|+.++
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~--~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVK---EV--DPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHH---hc--cCCCcEEEEEechhcCCH
Confidence 478899999999999876644 3333332 22 146899999999999654
No 357
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.53 E-value=0.00061 Score=72.45 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=37.1
Q ss_pred cchhHH--HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccc
Q psy1524 176 NEFPAM--RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238 (592)
Q Consensus 176 e~~~~l--~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~ 238 (592)
|.|... +-..-...|-.++|+-++|.-+--. +..+-.+ ..-+.|+|+|.+|+|+.+++
T Consensus 212 EpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~----~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 212 EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA----LAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred cHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh----hhhcCCEEEEEEecccCcHH
Confidence 665433 3334467899999999988654211 1111212 22478999999999998764
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=97.53 E-value=0.00032 Score=75.72 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=60.2
Q ss_pred cchhHHHHHhhhcCC-cEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524 176 NEFPAMRALSISSAD-AFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG 254 (592)
Q Consensus 176 e~~~~l~~~~~~~AD-~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~ 254 (592)
+.|..+.... ..+| +|++|+|+.|.. ..|...+.+.. .+.|+++|+||+||...
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~----------------- 111 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK----------------- 111 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-----------------
Confidence 4455544443 4445 999999998743 23445555532 36799999999999743
Q ss_pred CCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHH
Q psy1524 255 LPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 255 ~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
.+..+....+ ++ ..+. .++.+||++|.|++++++.+.+.
T Consensus 112 ---------------~~~~~~i~~~l~~~~k-~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 112 ---------------SVKKNKVKNWLRQEAK-ELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ---------------ccCHHHHHHHHHHHHH-hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 1122222222 22 2222 58999999999999999999765
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.51 E-value=0.00025 Score=66.74 Aligned_cols=56 Identities=30% Similarity=0.402 Sum_probs=38.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
....+|+++|.+|||||||+|.+.+... ......|+.+... +.++ . .+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~--~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-N--KIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-C--CEEEEECCCC
Confidence 3468899999999999999999997643 2334455544332 2233 2 3556999995
No 360
>KOG0447|consensus
Probab=97.51 E-value=0.001 Score=73.17 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=43.4
Q ss_pred cccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 172 ~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..+-+....|...|..+.++||+|+--. |.+.-......|...........|+|++|.|+.+.
T Consensus 432 ~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 432 PDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred ccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 4445667788889999999999998532 22222233333444445567889999999999876
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.48 E-value=0.00047 Score=71.48 Aligned_cols=89 Identities=21% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH 262 (592)
Q Consensus 183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (592)
...+..||++|+|+|+.++.+..+. .+..+. .+.|+|+|.||+|+.+..
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~------------------------ 64 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPA------------------------ 64 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHH------------------------
Confidence 4458899999999999877553321 111111 257999999999986430
Q ss_pred cCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 263 QISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 263 ~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
.. .......+ .....++.+||+++.|++++.+.+.+.+..
T Consensus 65 -------~~--~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 65 -------VT--KQWLKYFE-EKGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -------HH--HHHHHHHH-HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00 11111112 123468999999999999999988877643
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.45 E-value=0.0022 Score=64.60 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=41.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~ 120 (592)
....-|+|+|++++|||+|+|+|++. .|. ....++|.........+. +....+.++||+|.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~ 70 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGT 70 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCc
Confidence 34567899999999999999999988 664 333455543333322221 23345667999998
No 363
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.42 E-value=0.0005 Score=84.56 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=33.8
Q ss_pred cCCcEEEEEeCCCcCC--H-------HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 188 SADAFILVYAIDDPNS--F-------EEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~S--f-------e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
-.|+||+++|+.+--. - ..+...+.++.+. ..-..||.||.||||+..
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 4899999999876422 2 2334445555554 356899999999999883
No 364
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00071 Score=72.80 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=58.9
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
..++|.+++|+++...-+...+..++..+.. .+++.+||+||+||.++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~--------------------------- 158 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA--------------------------- 158 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---------------------------
Confidence 6789999999999755555556655554444 367889999999997530
Q ss_pred CCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li 307 (592)
.+....+.....+.+++.+||++|.|+++|...+-
T Consensus 159 -------~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 159 -------EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -------HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence 01122233323466789999999999999887763
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.37 E-value=0.0002 Score=68.46 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|.+|||||||+|.|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999976
No 366
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0015 Score=67.46 Aligned_cols=113 Identities=23% Similarity=0.306 Sum_probs=71.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC----------CCC------CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN----------TFS------PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~----------~f~------~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
...++|..||--+-|||||..+++.- .|. +.....+. ......+...+.+|-. +|+||+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyah--VDcPGH-- 85 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAH--VDCPGH-- 85 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEe--ccCCCh--
Confidence 56789999999999999999888731 111 11111111 3334445556777766 999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP- 201 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~- 201 (592)
..|-.-.-.-....|+.|+|+.++|.
T Consensus 86 -----------------------------------------------------aDYvKNMItgAaqmDgAILVVsA~dGp 112 (394)
T COG0050 86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP 112 (394)
T ss_pred -----------------------------------------------------HHHHHHHhhhHHhcCccEEEEEcCCCC
Confidence 22222222224568999999999984
Q ss_pred --CCHHHHHHHHHHHHHhhcCCCC-CEEEEEeCCCCccc
Q psy1524 202 --NSFEEIRLIRDHIFETKASTAV-PIVVVGNKSDLADE 237 (592)
Q Consensus 202 --~Sfe~l~~~l~~L~~~~~~~~~-PIILVgNK~DL~~~ 237 (592)
.+.+++- |.++ -.. -||++.||+|+.++
T Consensus 113 mPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 113 MPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred CCcchhhhh-----hhhh---cCCcEEEEEEecccccCc
Confidence 4555442 2232 244 57888999999986
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00033 Score=75.09 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.++|+|.+|||||||||+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999999663
No 368
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.23 E-value=0.0014 Score=68.32 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH 262 (592)
Q Consensus 183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (592)
...+..||++|+|+|+.++.+.+.. .+..+. .+.|+++|.||+|+.+..
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~~------------------------ 67 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADPE------------------------ 67 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCHH------------------------
Confidence 4458899999999999877553321 111111 267999999999986430
Q ss_pred cCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 263 QISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 263 ~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
. .+....+.+ .....++.+||+++.|++++.+.+...+..
T Consensus 68 -------~--~~~~~~~~~-~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 -------V--TKKWIEYFE-EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred -------H--HHHHHHHHH-HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0 011111111 123568899999999999999988877644
No 369
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.22 E-value=0.00074 Score=68.89 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|.+|||||||+|+|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 7899999999999999999965
No 370
>PRK12289 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.00049 Score=73.88 Aligned_cols=52 Identities=33% Similarity=0.316 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCccC-------ceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKR-------TIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~-------Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.++|+|.+|||||||||+|+..... ..... ||.. ...+.+.+.. .|+||||+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~l~~g~---~liDTPG~ 234 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFELPNGG---LLADTPGF 234 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEECCCCc---EEEeCCCc
Confidence 3899999999999999999965322 11112 3322 2333443222 35999999
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=97.17 E-value=0.0005 Score=74.18 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC------C-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT------F-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~------f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.++.|||.+|||||||||+|.... . ......||.+.. .+.+++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCc
Confidence 479999999999999999998532 1 234455554433 2333332 246999998
No 372
>KOG1424|consensus
Probab=97.16 E-value=0.00063 Score=74.75 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=39.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
..+.|.+||+|||||||+||.|++.+.+.. ..|-+ .-+..++.+.. .+.++|+||.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 379999999999999999999998876532 22222 22334444443 2344999998
No 373
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.02 Score=54.73 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=43.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~ 118 (592)
..+||.|.|.||||||||+.++...--.. ..+++-+++..+.-+++.+-+.|+|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 45899999999999999999988432211 134556777777888999999999987
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.09 E-value=0.00054 Score=73.79 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.+|+|+|.+|||||||+|+|++... ...+..||.+.. .+.+++. +.++||||.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCC
Confidence 4899999999999999999996422 234445554332 2333322 346999999
No 375
>KOG3859|consensus
Probab=97.08 E-value=0.0009 Score=68.48 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=46.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc----Ccee-eeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK----RTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~----~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
-..++|+.||.+|.||||||..|.+..|..... +++. ...+..+.-.+..++|.|+||.|++
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 567999999999999999999999888864332 3332 2223333446788999999999994
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.98 E-value=0.0028 Score=60.18 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++++|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999999865
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.97 E-value=0.0017 Score=67.75 Aligned_cols=53 Identities=36% Similarity=0.488 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC------CCCCCc---cCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN------TFSPKY---KRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~------~f~~~~---~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
..+++|.+|||||||+|+|... .+.+.. ..|| .....+.+++.- .|+||||++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTT--t~~~l~~l~~gG---~iiDTPGf~ 227 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTT--THVELFPLPGGG---WIIDTPGFR 227 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCcc--ceEEEEEcCCCC---EEEeCCCCC
Confidence 6789999999999999999954 111111 1222 234445553222 249999993
No 378
>KOG1143|consensus
Probab=96.96 E-value=0.0011 Score=70.26 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCC
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTP 268 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (592)
-|..++|+++........ +..+-.+.. -++|+.++.+|+|+.+... + +.....+..+.... .-..-..
T Consensus 275 Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~-~----~~tv~~l~nll~~~--Gc~kvp~ 342 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG-L----KKTVKDLSNLLAKA--GCTKVPK 342 (591)
T ss_pred CceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh-H----HHHHHHHHHHHhhc--Cccccce
Confidence 578888888876543211 122222322 3799999999999997610 0 11111111111100 0011112
Q ss_pred CCCChHHHHHHHh---hcCCCeEEEcccCCCccHHHHH
Q psy1524 269 DQVPYDTTESVVQ---VDWENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 269 r~Vs~ee~~~la~---~~~~~~~~EvSAktg~gVeeLf 303 (592)
+..+.+++...++ .....++|-+|+.+|+|++-+-
T Consensus 343 ~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 343 RVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred EeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 2333444443332 2456689999999999987553
No 379
>KOG0467|consensus
Probab=96.89 E-value=0.0047 Score=70.64 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=74.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee------eeEEE-------EEeeCCeEEEEEEEeCCCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE------EMHHE-------DFSMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~------d~~~~-------~v~vdg~~v~L~I~DT~G~~~~~ 124 (592)
...-+|+++-.-.-|||||...|+.. .+......++. |-.++ .+..--+.+.++++|+||+
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh---- 82 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH---- 82 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc----
Confidence 44568999999999999999999832 22222222221 11111 1222235578899999999
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
-.|.+......+-+|++++++|+...-.-
T Consensus 83 ---------------------------------------------------vdf~sevssas~l~d~alvlvdvvegv~~ 111 (887)
T KOG0467|consen 83 ---------------------------------------------------VDFSSEVSSASRLSDGALVLVDVVEGVCS 111 (887)
T ss_pred ---------------------------------------------------cchhhhhhhhhhhcCCcEEEEeeccccch
Confidence 56677777777889999999999765433
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524 205 EEIRLIRDHIFETKASTAVPIVVVGNKSDL 234 (592)
Q Consensus 205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL 234 (592)
..... ++. .-..+...++|.||+|.
T Consensus 112 qt~~v----lrq-~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 112 QTYAV----LRQ-AWIEGLKPILVINKIDR 136 (887)
T ss_pred hHHHH----HHH-HHHccCceEEEEehhhh
Confidence 22221 211 12346778999999993
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.81 E-value=0.0058 Score=63.39 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~ 83 (592)
.-.|+|+|.+||||||++..|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578889999999999998887
No 381
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0056 Score=67.83 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=71.5
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.....+..+-|+|+|++|+||||||..|+..-- ..|+.+..--...+.++.-.++|..++..
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~D-------------- 123 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPSD-------------- 123 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChHH--------------
Confidence 344556778999999999999999999884311 11222222122245677777888888743
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
...|.+ ..+-||.+|+++|..-.-..+.+. ++..+
T Consensus 124 -------------------------------------------l~~miD-vaKIaDLVlLlIdgnfGfEMETmE-FLnil 158 (1077)
T COG5192 124 -------------------------------------------LHQMID-VAKIADLVLLLIDGNFGFEMETME-FLNIL 158 (1077)
T ss_pred -------------------------------------------HHHHHh-HHHhhheeEEEeccccCceehHHH-HHHHH
Confidence 112222 245689999999976443223222 23333
Q ss_pred HHhhcCCCCCEEEEEeCCCCccc
Q psy1524 215 FETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..+ + -..++-|++..||...
T Consensus 159 ~~H-G--mPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 159 ISH-G--MPRVLGVVTHLDLFKN 178 (1077)
T ss_pred hhc-C--CCceEEEEeecccccC
Confidence 332 2 2347789999999865
No 382
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.79 E-value=0.0011 Score=69.16 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
-.++++|.+|||||||+|.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 479999999999999999999653
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.79 E-value=0.0075 Score=64.00 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..-.|+|+|++||||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346888999999999999998874
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=96.69 E-value=0.0053 Score=65.59 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+|+|.+||||||++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999887776
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=96.62 E-value=0.0034 Score=65.86 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
..++|+|.+|||||||+|.|++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999653
No 386
>PRK13695 putative NTPase; Provisional
Probab=96.57 E-value=0.02 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
+||+|+|.+|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999987643
No 387
>KOG3887|consensus
Probab=96.50 E-value=0.0083 Score=60.53 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEE--EEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHE--DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~--~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.+|+++|-.-+||||+..-.... ..++ .|.- +...+ .-.+.+.-+.+++||.||+-.-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~---------------- 88 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDF---------------- 88 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCcccc----------------
Confidence 56999999999999987543322 1111 1110 00000 0122345578999999999110
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH-hh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE-TK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~-~~ 218 (592)
+. ..|. ....++++-++|+|+|+.+.. .+.+..+...+.+ +.
T Consensus 89 ------------------------------Fd----~s~D--~e~iF~~~gALifvIDaQddy-~eala~L~~~v~rayk 131 (347)
T KOG3887|consen 89 ------------------------------FD----PSFD--YEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYK 131 (347)
T ss_pred ------------------------------CC----CccC--HHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheee
Confidence 00 0111 123478899999999987532 3334443333332 22
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---cCCCeEEEcccCC
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---DWENGFVEASAKD 295 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~~~~~~~EvSAkt 295 (592)
-++++.+=+...|.|-..++..++ ++|.+-......++.. .....|+-+|-..
T Consensus 132 vNp~in~EVfiHKvDGLsdd~kie------------------------tqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 132 VNPNINFEVFIHKVDGLSDDFKIE------------------------TQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred cCCCceEEEEEEeccCCchhhhhh------------------------hHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 457788889999999776533221 1222222222233322 2234577777654
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
..|-|+|..+++.+..+
T Consensus 188 -HSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 188 -HSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred -hHHHHHHHHHHHHHhhh
Confidence 67888898888887543
No 388
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.39 E-value=0.016 Score=62.97 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred HHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCC-c
Q psy1524 180 AMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP-F 248 (592)
Q Consensus 180 ~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~-~ 248 (592)
.-|..++.++++||||+++++- ..+.+.-.++..+.....-.+.|+||++||+|+.... +..+. +
T Consensus 251 kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~K----l~~~~~l 326 (389)
T PF00503_consen 251 KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEK----LKKGPKL 326 (389)
T ss_dssp GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHH----TTTSSCG
T ss_pred hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHH----ccCCCch
Confidence 3445568899999999998642 1244444455555554334578999999999998651 11111 2
Q ss_pred ccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----c------CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----D------WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~------~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
..++.+... ...-..+.+..+... . ..+-+..|+|..-.+|..+|..+.+.|
T Consensus 327 ~~~fp~y~g----------~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 327 SKYFPDYTG----------DRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp GGTSTTGGS----------H-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCC----------CcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 233322210 001233444433321 1 222356899999999999999887654
No 389
>KOG0466|consensus
Probab=96.33 E-value=0.0061 Score=63.28 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCcEEEEEeCCC----cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524 189 ADAFILVYAIDD----PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 189 AD~iIlVyDvsd----~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (592)
.|++++++..+. +.+-+++... ++-. -..++++-||+||...+..
T Consensus 149 mDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQNKiDli~e~~A------------------------ 197 (466)
T KOG0466|consen 149 MDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQNKIDLIKESQA------------------------ 197 (466)
T ss_pred hhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEechhhhhhHHHH------------------------
Confidence 467777776543 3444554331 1111 2468999999999876321
Q ss_pred CCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 265 SGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.-..++++.|.+.. .+.+++++||.-++||+-+.+.+++.+
T Consensus 198 -----~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 198 -----LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred -----HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 11234444554422 356899999999999999999999887
No 390
>KOG2484|consensus
Probab=96.33 E-value=0.003 Score=67.66 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=40.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC-ccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~-~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|.|+|.+||||||+||+|.....+.. ..|++. ..-+.+.+|. .+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhheeccC---CceeccCCce
Confidence 5679999999999999999999998876532 223332 2223344443 3555999998
No 391
>KOG4273|consensus
Probab=96.30 E-value=0.012 Score=59.65 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
..++++|||.+....+..++.|+..-.- . .--..+.+|||.|....
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdi--n-sfdillcignkvdrvph 124 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDI--N-SFDILLCIGNKVDRVPH 124 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhcccccc--c-cchhheecccccccccc
Confidence 4689999999999999999998763211 1 11245778999997653
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.21 E-value=0.018 Score=63.46 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~ 83 (592)
...|+++|.+||||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999987
No 393
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.16 E-value=0.015 Score=46.04 Aligned_cols=43 Identities=30% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCc--CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCC
Q psy1524 189 ADAFILVYAIDDP--NSFEEIRLIRDHIFETKASTAVPIVVVGNKSD 233 (592)
Q Consensus 189 AD~iIlVyDvsd~--~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~D 233 (592)
++++++++|+|.. .|.++-..++.+++... .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 6899999999875 56777777888888763 4899999999998
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.017 Score=62.47 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-.|+|+|++||||||++.+|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999853
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.08 E-value=0.022 Score=53.69 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy1524 65 VVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~ 84 (592)
|.++|.+|||||||+..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998874
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.03 Score=63.01 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|+|++||||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999998874
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.00 E-value=0.035 Score=46.33 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy1524 65 VVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~ 84 (592)
|++.|..|+||||+...+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999988873
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.85 E-value=0.029 Score=60.82 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTF 87 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f 87 (592)
.=.|++||++||||||-+..|.....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45789999999999999998885543
No 399
>KOG2485|consensus
Probab=95.77 E-value=0.016 Score=60.51 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=36.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------CceeeeEEEEEee-CCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIEEMHHEDFSM-NGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~ 120 (592)
...+.|.|+|-||||||||+|.+.......... +.+.......+.+ +... +.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~--vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP--VYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc--eEEecCCCc
Confidence 467899999999999999999888543322111 2221112222333 3333 445999998
No 400
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.73 E-value=0.16 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYNTF 87 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~~f 87 (592)
.+|-|.=|+|||||+|+++.+.-
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 56789999999999999996533
No 401
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.69 E-value=0.057 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.-++|+|++|+|||+|++.+....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998553
No 402
>KOG0463|consensus
Probab=95.69 E-value=0.026 Score=60.09 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTF 87 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f 87 (592)
.-..++|++||.-.+|||||+--|+.+..
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeL 158 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGEL 158 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeeccc
Confidence 33568999999999999999977775543
No 403
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.63 E-value=0.052 Score=59.20 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=40.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC---------------------CCccCcee-eeE---EEEEee-CCeEEEEEE
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS---------------------PKYKRTIE-EMH---HEDFSM-NGVHLKLDI 114 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~---------------------~~~~~Tt~-d~~---~~~v~v-dg~~v~L~I 114 (592)
-.+=|.+||+--+||||||.||..--.. .....|++ .+. -..+.+ ++..+.+.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3578999999999999999999853111 11222333 111 112333 678899999
Q ss_pred EeCCCC
Q psy1524 115 LDTSGE 120 (592)
Q Consensus 115 ~DT~G~ 120 (592)
+|+.|.
T Consensus 96 iDCVGy 101 (492)
T PF09547_consen 96 IDCVGY 101 (492)
T ss_pred Eeecce
Confidence 999997
No 404
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.55 E-value=0.059 Score=56.46 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=60.9
Q ss_pred hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524 186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (592)
+.++|-+|+|+.+.+++ +...+..++-.+ + ..++.-|||+||+||.++..
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e---~~gi~pvIvlnK~DL~~~~~------------------------- 127 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-E---AGGIEPVIVLNKIDLLDDEE------------------------- 127 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-H---HcCCcEEEEEEccccCcchH-------------------------
Confidence 55688889999998886 444444444333 2 24677788899999997621
Q ss_pred CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
...++...... ..+.+.+.+||+++.+++++...+...+.
T Consensus 128 ------~~~~~~~~~y~-~~gy~v~~~s~~~~~~~~~l~~~l~~~~s 167 (301)
T COG1162 128 ------AAVKELLREYE-DIGYPVLFVSAKNGDGLEELAELLAGKIT 167 (301)
T ss_pred ------HHHHHHHHHHH-hCCeeEEEecCcCcccHHHHHHHhcCCeE
Confidence 11022222333 46778999999999999999888766543
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.029 Score=61.13 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|++||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999973
No 406
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.38 E-value=0.07 Score=50.84 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-++++|.+|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888763
No 407
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.37 E-value=0.076 Score=55.72 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHhhhcCCcEEEEEeCCC---cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524 181 MRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231 (592)
Q Consensus 181 l~~~~~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK 231 (592)
.....++...+=++|+|=-. ..+..+....++.|+.....-++|+|.||++
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 33456788889999999322 2455666667777777766678999999975
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.31 E-value=0.23 Score=52.71 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.+|.|.-|+|||||+|+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999954
No 409
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.31 E-value=0.015 Score=51.78 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|.|.+||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 410
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.039 Score=67.16 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred hcCCcEEEEEeCCCcCCH--H-------HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 187 SSADAFILVYAIDDPNSF--E-------EIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 187 ~~AD~iIlVyDvsd~~Sf--e-------~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+-.|+||++.|+.+--+- . .+..-+.+|.+. -.-..|+.|++||.|+..-
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence 457999999998663221 1 122234444443 3457899999999999863
No 411
>KOG0460|consensus
Probab=95.19 E-value=0.098 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....++|.-||--.-|||||-.+++
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAIT 75 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAIT 75 (449)
T ss_pred CCCcccccccccccCCchhHHHHHH
Confidence 3456899999999999999998877
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.058 Score=59.31 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-+|+|||++||||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 413
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.05 E-value=0.093 Score=46.37 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=32.8
Q ss_pred HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231 (592)
Q Consensus 184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK 231 (592)
..+..+|.+|+|.+. +..++..+..+++.+.+........+.+|+|+
T Consensus 60 ~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 60 AALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 356789999999975 45667777877777766532214567788885
No 414
>KOG2423|consensus
Probab=94.97 E-value=0.011 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=26.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS 88 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~ 88 (592)
...+-|.+||++||||||+||.|.....+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 45689999999999999999999988776
No 415
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.86 E-value=0.082 Score=58.53 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+|+|.+||||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998887
No 416
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.80 E-value=0.059 Score=51.94 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT 117 (592)
+|+|.|++|+|||||+++++..--.. .-.+.-+++..+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999999988331110 11234466666666788888888888
No 417
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.67 E-value=0.12 Score=44.79 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=20.3
Q ss_pred HhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524 184 LSISSADAFILVYAIDDPNSFEEIRLIRD 212 (592)
Q Consensus 184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~ 212 (592)
..+..+|.++++.+. +..++..+..+++
T Consensus 57 ~~l~~ad~viv~~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 57 NALAAADLVLIPVQP-SPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHCCEEEEeccC-CHHHHHHHHHHHH
Confidence 456779999999986 4556666666655
No 418
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.59 E-value=0.12 Score=47.79 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=34.3
Q ss_pred HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
..+..+|.+++|.+.+ ..++..+...++.+.+. ....++.+|.|+++-.
T Consensus 62 ~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 62 DFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 3578899999999875 45566655666666543 2456788999999743
No 419
>KOG0085|consensus
Probab=94.56 E-value=0.024 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
...+|++++|...+||||+|.+..
T Consensus 37 rrelkllllgtgesgkstfikqmr 60 (359)
T KOG0085|consen 37 RRELKLLLLGTGESGKSTFIKQMR 60 (359)
T ss_pred hhhheeeeecCCCcchhhHHHHHH
Confidence 467999999999999999998754
No 420
>PRK07261 topology modulation protein; Provisional
Probab=94.44 E-value=0.032 Score=53.71 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 421
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.44 E-value=0.031 Score=51.08 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~ 83 (592)
|+|+|.+|||||||+.+|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.44 E-value=0.027 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999844
No 423
>PRK08118 topology modulation protein; Reviewed
Probab=94.42 E-value=0.031 Score=53.60 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
||+|+|++|||||||..+|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999844
No 424
>KOG1534|consensus
Probab=94.35 E-value=0.1 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+-+.++|+.|+||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46788999999999999998873
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.35 E-value=0.055 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.....-|+|+|++|||||||+++|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345567889999999999999999854
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.033 Score=56.71 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|+|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988853
No 427
>KOG0464|consensus
Probab=94.24 E-value=0.021 Score=61.47 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=79.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc--CCC-C---CCccCcee-----------eeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY--NTF-S---PKYKRTIE-----------EMHHEDFSMNGVHLKLDILDTSGEQSG 123 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~--~~f-~---~~~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~G~~~~ 123 (592)
+.-+|.|+..-.+||||...|++. +.. + -+.-.|+. ...+.-+.+|.+.+.++++||||+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh--- 112 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH--- 112 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc---
Confidence 345788999999999999999872 111 0 01111211 122334566777788889999999
Q ss_pred CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS 203 (592)
Q Consensus 124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S 203 (592)
-.|+--...+++--|+++.|||.+....
T Consensus 113 ----------------------------------------------------vdf~leverclrvldgavav~dasagve 140 (753)
T KOG0464|consen 113 ----------------------------------------------------VDFRLEVERCLRVLDGAVAVFDASAGVE 140 (753)
T ss_pred ----------------------------------------------------ceEEEEHHHHHHHhcCeEEEEeccCCcc
Confidence 3444445556777899999999987655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
-..+..|.+ ....++|-+...||+|....
T Consensus 141 ~qtltvwrq-----adk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 141 AQTLTVWRQ-----ADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred cceeeeehh-----ccccCCchhhhhhhhhhhhh
Confidence 444554543 24568899999999998755
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.037 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
||+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999965
No 429
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.11 E-value=0.075 Score=51.34 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 190 DAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 190 D~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
|++++|+|+.++.+..+ ..+...+. . ...+.|+|+|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l-~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-Q-AGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-h-ccCCCCEEEEEehhhcCCH
Confidence 78999999988643221 11222211 1 2246899999999999764
No 430
>KOG0780|consensus
Probab=94.02 E-value=0.075 Score=57.14 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....--|++||-.|+||||.+..|.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHH
Confidence 3344578899999999999998887
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.91 E-value=0.82 Score=44.40 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 8999999999999999998854
No 432
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=0.19 Score=54.68 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|+|++||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.87 E-value=0.056 Score=43.56 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~ 83 (592)
..+|.|+.|+|||||+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999887
No 434
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.81 E-value=0.13 Score=60.37 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--|+|||++||||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 36889999999999999998853
No 435
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.64 E-value=0.062 Score=47.14 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS 88 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~ 88 (592)
-.++|+|++|+|||+++..++..-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 37899999999999999999865443
No 436
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.63 E-value=0.055 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|..|+|||||++.+++.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 7899999999999999988743
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.61 E-value=0.064 Score=43.63 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 438
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.58 E-value=0.058 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|.|.+|||||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 439
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.52 E-value=0.059 Score=49.95 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.52 E-value=0.062 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.=|+|+|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999864
No 441
>PRK01889 GTPase RsgA; Reviewed
Probab=93.42 E-value=0.064 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-+++|+|.+|||||||+|.+++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 38999999999999999999964
No 442
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.32 Score=49.30 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=39.5
Q ss_pred hhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 165 KLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 165 ~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
........|+.|-|.. ...+++|.+|.|.|.+- .|+...+..-. |.+-. .-.++.+|.||.|-.
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHHh--CCceEEEEEeeccch
Confidence 3444555677665432 34678999999999763 34444333222 22211 137999999999965
No 443
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.35 E-value=0.058 Score=54.44 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|+|++|||||||+|-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.33 E-value=0.062 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 445
>PRK04195 replication factor C large subunit; Provisional
Probab=93.27 E-value=0.69 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--++|.|++|+||||+++.+++.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
No 446
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.21 E-value=0.17 Score=55.91 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=19.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
...-|+++|.+|+||||++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999977666
No 447
>PRK06217 hypothetical protein; Validated
Probab=93.21 E-value=0.073 Score=51.50 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999843
No 448
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.15 E-value=0.075 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999743
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.06 E-value=0.074 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|||||||++.|+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999963
No 450
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.05 E-value=0.08 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999843
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.05 E-value=0.078 Score=47.27 Aligned_cols=21 Identities=19% Similarity=0.467 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|.|++|+|||+|++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999854
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.061 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.=++|.|++|||||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 458899999999999999999654
No 453
>PRK08233 hypothetical protein; Provisional
Probab=93.03 E-value=0.093 Score=49.96 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.+-|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999999843
No 454
>PRK10867 signal recognition particle protein; Provisional
Probab=93.03 E-value=0.2 Score=55.47 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=19.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+++|.+||||||++..|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35688999999999999776665
No 455
>KOG0469|consensus
Probab=92.99 E-value=0.18 Score=55.76 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=34.5
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
-.|++-....++-.|+.++|+|.-+.--...-..+.+.+ .+.+.-++|.||.|..
T Consensus 109 VDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~-----~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 109 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI-----AERIKPVLVMNKMDRA 163 (842)
T ss_pred ccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH-----HhhccceEEeehhhHH
Confidence 556666666788899999999987654322212122222 2344556789999965
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.80 E-value=0.65 Score=47.91 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999985
No 457
>PRK14530 adenylate kinase; Provisional
Probab=92.76 E-value=0.096 Score=52.03 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999974
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.71 E-value=0.11 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
+...-|+|+|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.58 E-value=0.12 Score=50.82 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.....|+|.|.+|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999854
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.57 E-value=0.098 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-+|+|+|++|+|||||+|-+.+=
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 38999999999999999988754
No 461
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.56 E-value=0.096 Score=46.85 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~ 83 (592)
-.++|+|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 368999999999999999976
No 462
>PLN03025 replication factor C subunit; Provisional
Probab=92.55 E-value=0.91 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS 88 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~ 88 (592)
.++|.|++|+||||++..++..-+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5899999999999999998865443
No 463
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.53 E-value=0.098 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
=.|+|+|++|+|||||+..+-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3799999999999999988863
No 464
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.53 E-value=0.099 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+++|++|+|||+|+..++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999884
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.50 E-value=0.096 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 466
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.094 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++-+.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998853
No 467
>KOG0459|consensus
Probab=92.41 E-value=0.16 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....++++|+|--.+||||+-.++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il 100 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNIL 100 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeE
Confidence 4567999999999999999987665
No 468
>PRK03839 putative kinase; Provisional
Probab=92.40 E-value=0.11 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+|+|+|.+|+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999854
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.33 E-value=0.1 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 470
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.27 E-value=1.3 Score=41.70 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=33.6
Q ss_pred HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
..+..+|.+|+|.+.+ ..++..+..+++.+... ....+.+|.|++|..
T Consensus 80 ~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~ 127 (179)
T cd02036 80 TAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPD 127 (179)
T ss_pred HHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc---CCceEEEEEeCCccc
Confidence 3467899999999865 45666676666666542 233567899999864
No 471
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.24 E-value=0.14 Score=49.66 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
..-|.|+|.+|+|||||+.+++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999844
No 472
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=92.20 E-value=0.59 Score=51.91 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=49.3
Q ss_pred CcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe-CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA-IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 162 ~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD-vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
+.++-.....+-+....-.+....|++++++|| | .|.--+..+++.++..+... ....+-||+|--|.+..
T Consensus 132 vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l-~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 132 VDPDAKVADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRL-AAEGKTIIFITHKLKEV 203 (501)
T ss_pred CCccceeecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccHHHH
Confidence 344444444455556666677888999988776 4 34445678888888888766 45678899999998754
No 473
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.19 E-value=0.12 Score=46.42 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=30.7
Q ss_pred HHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524 180 AMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNK 231 (592)
Q Consensus 180 ~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK 231 (592)
......+......++|+|=-+.- + ...+..|.......++++|++|+-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~----~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFS----DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHT----HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCC----HHHHHHHHHHHhCCCCeEEEEECh
Confidence 34444566666689999955443 2 445555555545678899999976
No 474
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.13 E-value=0.11 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
--++|.|++|+|||+|++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.04 E-value=0.12 Score=50.07 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~ 83 (592)
-.++|+|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999999875
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.03 E-value=0.12 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--|+|+|++|+|||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999854
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.79 E-value=0.14 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|+|++|+|||||++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998853
No 478
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.71 E-value=0.14 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 479
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.69 E-value=1.6 Score=45.85 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
.+.+.++.|+.+...+......+..+... ...+.+|.-+++..
T Consensus 55 ~~~~av~iD~r~~~~~~~~~~~~~~L~~~----g~~~~iI~L~a~~e 97 (288)
T PRK05416 55 IRKVAVVIDVRSRPFFDDLPEALDELRER----GIDVRVLFLDASDE 97 (288)
T ss_pred CCCeEEEEccCchhhHHHHHHHHHHHHHc----CCcEEEEEEECCHH
Confidence 46688889998766455666666666553 34555566666543
No 480
>PF05729 NACHT: NACHT domain
Probab=91.67 E-value=0.14 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
++|.|++|+|||||+.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999854
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.65 E-value=0.58 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
=+++|+|+.|+|||||++.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 38999999999999999999843
No 482
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.64 E-value=0.15 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 483
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.61 E-value=0.14 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|||++|+|||||+..+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998875
No 484
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.55 E-value=0.14 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 689999999999999998774
No 485
>PRK14532 adenylate kinase; Provisional
Probab=91.55 E-value=0.15 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+|+||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999983
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.52 E-value=0.16 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 487
>KOG3347|consensus
Probab=91.51 E-value=0.14 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5668999999999999999999983
No 488
>PRK14531 adenylate kinase; Provisional
Probab=91.44 E-value=0.17 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+|+|+|++|+||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
No 489
>PRK13949 shikimate kinase; Provisional
Probab=91.43 E-value=0.16 Score=48.81 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+|+|||||...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998884
No 490
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.16 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.40 E-value=0.16 Score=49.78 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999864
No 492
>KOG0395|consensus
Probab=91.38 E-value=0.097 Score=51.70 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=43.2
Q ss_pred CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhhccCCChh
Q psy1524 336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPA 386 (592)
Q Consensus 336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akkd~~~~~~ 386 (592)
+.|+.++...++ ..|.|.|+|+|||.+.|+..+|.+++.++.+.+..++.
T Consensus 124 R~V~~eeg~~la-~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~~~~~ 173 (196)
T KOG0395|consen 124 RQVSEEEGKALA-RSWGCAFIETSAKLNYNVDEVFYELVREIRLPREGSLK 173 (196)
T ss_pred cccCHHHHHHHH-HhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhccccc
Confidence 678888877764 78999999999999999999999999999887776543
No 493
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.34 E-value=0.48 Score=51.98 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
......|+++|-.|+||||.+-.|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHH
Confidence 3456789999999999999987776
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.32 E-value=0.15 Score=50.15 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999864
No 495
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.31 E-value=0.14 Score=49.23 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+|+|+|.+|+||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999843
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.30 E-value=0.17 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 497
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.29 E-value=0.17 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+++-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998854
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.23 E-value=0.16 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|+|++|+||||+++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998753
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.22 E-value=0.16 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988854
No 500
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.21 E-value=0.18 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
Done!