Query psy1524
Match_columns 592
No_of_seqs 549 out of 2268
Neff 6.5
Searched_HMMs 29240
Date Sat Aug 17 00:52:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 100.0 1E-42 3.5E-47 316.7 -1.8 109 367-483 14-125 (162)
2 3u5c_K 40S ribosomal protein S 100.0 3.5E-39 1.2E-43 276.9 -3.3 83 367-453 13-96 (105)
3 4dkx_A RAS-related protein RAB 100.0 6.4E-33 2.2E-37 274.4 18.1 166 60-313 11-177 (216)
4 3kkq_A RAS-related protein M-R 100.0 2.3E-28 7.9E-33 230.6 21.1 169 57-312 13-182 (183)
5 1c1y_A RAS-related protein RAP 100.0 4.3E-28 1.5E-32 224.0 21.1 164 61-310 2-165 (167)
6 3ihw_A Centg3; RAS, centaurin, 100.0 5.6E-28 1.9E-32 230.9 21.4 168 57-314 15-182 (184)
7 2fn4_A P23, RAS-related protei 100.0 7.7E-28 2.7E-32 225.2 21.7 169 59-314 6-174 (181)
8 3t5g_A GTP-binding protein RHE 100.0 2E-28 7E-33 230.6 17.6 168 60-314 4-171 (181)
9 3cbq_A GTP-binding protein REM 100.0 4.1E-28 1.4E-32 234.2 19.5 170 57-313 18-189 (195)
10 2iwr_A Centaurin gamma 1; ANK 100.0 7.6E-28 2.6E-32 226.1 20.9 164 60-313 5-170 (178)
11 1u8z_A RAS-related protein RAL 100.0 1.2E-27 4.2E-32 220.3 20.9 164 61-311 3-166 (168)
12 2hup_A RAS-related protein RAB 100.0 1E-27 3.6E-32 231.9 21.3 171 56-314 23-195 (201)
13 2a9k_A RAS-related protein RAL 100.0 1.7E-27 5.8E-32 224.0 21.8 168 59-313 15-182 (187)
14 1kao_A RAP2A; GTP-binding prot 100.0 1.1E-27 3.8E-32 220.4 20.0 164 61-311 2-165 (167)
15 2g3y_A GTP-binding protein GEM 100.0 8.1E-28 2.8E-32 236.8 20.0 170 57-313 32-204 (211)
16 3c5c_A RAS-like protein 12; GD 100.0 6.4E-28 2.2E-32 230.5 18.2 165 59-311 18-185 (187)
17 2nzj_A GTP-binding protein REM 100.0 1.6E-27 5.6E-32 222.1 20.1 167 60-313 2-170 (175)
18 1z0f_A RAB14, member RAS oncog 100.0 2.2E-27 7.6E-32 221.6 20.8 166 58-311 11-177 (179)
19 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-27 4.6E-32 228.9 19.8 170 56-312 20-190 (192)
20 2ew1_A RAS-related protein RAB 100.0 1.1E-27 3.8E-32 232.8 19.4 171 56-314 20-191 (201)
21 3tkl_A RAS-related protein RAB 100.0 2.6E-27 9.1E-32 225.4 21.2 170 59-316 13-183 (196)
22 2bov_A RAla, RAS-related prote 100.0 4E-27 1.4E-31 226.0 22.2 168 59-313 11-178 (206)
23 3q85_A GTP-binding protein REM 100.0 2.1E-27 7.3E-32 220.4 19.7 165 62-313 2-168 (169)
24 3q72_A GTP-binding protein RAD 100.0 1.7E-27 5.7E-32 220.5 18.7 164 62-313 2-165 (166)
25 3oes_A GTPase rhebl1; small GT 100.0 5.7E-28 1.9E-32 232.9 15.9 171 58-315 20-190 (201)
26 4dsu_A GTPase KRAS, isoform 2B 100.0 3E-27 1E-31 223.0 20.3 168 60-315 2-169 (189)
27 2bme_A RAB4A, RAS-related prot 100.0 3.3E-27 1.1E-31 223.0 20.4 170 58-315 6-176 (186)
28 3q3j_B RHO-related GTP-binding 100.0 9.7E-28 3.3E-32 234.8 17.3 183 56-314 21-205 (214)
29 2fu5_C RAS-related protein RAB 100.0 5.2E-28 1.8E-32 228.2 14.5 167 59-313 5-172 (183)
30 2a5j_A RAS-related protein RAB 100.0 2.5E-27 8.5E-32 226.3 19.4 171 56-314 15-186 (191)
31 2oil_A CATX-8, RAS-related pro 100.0 3.6E-27 1.2E-31 225.0 19.7 171 55-313 18-189 (193)
32 2atv_A RERG, RAS-like estrogen 100.0 5.2E-27 1.8E-31 225.0 20.7 166 60-313 26-192 (196)
33 3reg_A RHO-like small GTPase; 99.9 2.7E-27 9.2E-32 226.3 18.4 170 58-313 19-189 (194)
34 1z08_A RAS-related protein RAB 99.9 1.8E-27 6.2E-32 220.8 16.7 164 60-311 4-168 (170)
35 1r2q_A RAS-related protein RAB 99.9 4.2E-27 1.5E-31 217.5 19.0 163 60-310 4-167 (170)
36 3bc1_A RAS-related protein RAB 99.9 5.9E-27 2E-31 221.4 20.4 170 58-314 7-187 (195)
37 2gf9_A RAS-related protein RAB 99.9 5.8E-27 2E-31 223.1 20.3 170 56-313 16-186 (189)
38 1wms_A RAB-9, RAB9, RAS-relate 99.9 9.1E-27 3.1E-31 217.8 21.3 167 59-312 4-174 (177)
39 3dz8_A RAS-related protein RAB 99.9 9.9E-28 3.4E-32 229.1 14.4 169 58-314 19-188 (191)
40 2cjw_A GTP-binding protein GEM 99.9 6E-27 2E-31 225.4 19.9 168 60-314 4-174 (192)
41 2g6b_A RAS-related protein RAB 99.9 7E-27 2.4E-31 219.2 19.9 168 58-313 6-175 (180)
42 2efe_B Small GTP-binding prote 99.9 6.9E-27 2.4E-31 219.4 19.8 165 59-311 9-174 (181)
43 1zbd_A Rabphilin-3A; G protein 99.9 1E-26 3.6E-31 223.5 21.5 167 59-313 5-172 (203)
44 1z06_A RAS-related protein RAB 99.9 6.3E-27 2.2E-31 222.8 19.6 166 59-311 17-187 (189)
45 2atx_A Small GTP binding prote 99.9 5.4E-27 1.8E-31 223.9 19.0 177 59-311 15-192 (194)
46 1z0j_A RAB-22, RAS-related pro 99.9 1E-26 3.6E-31 215.3 20.3 163 60-310 4-167 (170)
47 2q3h_A RAS homolog gene family 99.9 4.6E-27 1.6E-31 225.6 18.4 180 58-313 16-196 (201)
48 1z2a_A RAS-related protein RAB 99.9 4.8E-27 1.6E-31 217.1 17.7 163 60-311 3-166 (168)
49 1m7b_A RND3/RHOE small GTP-bin 99.9 3.3E-27 1.1E-31 224.1 17.0 178 59-312 4-183 (184)
50 3tw8_B RAS-related protein RAB 99.9 4.5E-27 1.6E-31 219.9 17.4 167 58-313 5-172 (181)
51 2hxs_A RAB-26, RAS-related pro 99.9 3.1E-27 1.1E-31 221.2 15.9 166 60-312 4-173 (178)
52 2o52_A RAS-related protein RAB 99.9 3.7E-27 1.3E-31 227.6 16.8 171 56-314 19-190 (200)
53 2bcg_Y Protein YP2, GTP-bindin 99.9 1.4E-26 4.6E-31 223.5 20.4 170 59-316 5-175 (206)
54 1g16_A RAS-related protein SEC 99.9 6.8E-27 2.3E-31 216.5 17.3 164 61-313 2-166 (170)
55 1ek0_A Protein (GTP-binding pr 99.9 8.9E-27 3E-31 215.4 18.0 165 61-310 2-167 (170)
56 2p5s_A RAS and EF-hand domain 99.9 7.8E-27 2.7E-31 224.6 18.2 171 59-311 25-196 (199)
57 2fg5_A RAB-22B, RAS-related pr 99.9 8.8E-27 3E-31 223.0 18.5 165 58-310 19-184 (192)
58 1x3s_A RAS-related protein RAB 99.9 1.2E-26 4.1E-31 220.4 19.0 168 59-314 12-180 (195)
59 1ky3_A GTP-binding protein YPT 99.9 1.1E-26 3.8E-31 217.4 18.5 170 59-313 5-179 (182)
60 2j0v_A RAC-like GTP-binding pr 99.9 3.3E-27 1.1E-31 228.8 15.2 175 60-314 7-182 (212)
61 2f7s_A C25KG, RAS-related prot 99.9 4.7E-27 1.6E-31 228.6 15.9 172 55-313 18-200 (217)
62 2y8e_A RAB-protein 6, GH09086P 99.9 8.2E-27 2.8E-31 217.8 16.8 163 60-310 12-175 (179)
63 1gwn_A RHO-related GTP-binding 99.9 7E-27 2.4E-31 227.7 16.9 178 59-312 25-204 (205)
64 2erx_A GTP-binding protein DI- 99.9 2E-26 6.8E-31 213.4 18.7 163 61-310 2-165 (172)
65 2ce2_X GTPase HRAS; signaling 99.9 5.2E-26 1.8E-30 208.6 21.3 163 61-311 2-164 (166)
66 3cpj_B GTP-binding protein YPT 99.9 1E-26 3.5E-31 228.3 16.9 169 59-315 10-179 (223)
67 1mh1_A RAC1; GTP-binding, GTPa 99.9 2E-26 7E-31 216.8 17.9 176 60-311 3-179 (186)
68 3con_A GTPase NRAS; structural 99.9 5.2E-26 1.8E-30 216.1 20.6 167 59-313 18-184 (190)
69 2j1l_A RHO-related GTP-binding 99.9 1.6E-26 5.6E-31 225.6 17.4 178 60-313 32-210 (214)
70 3clv_A RAB5 protein, putative; 99.9 7.5E-26 2.6E-30 214.8 20.6 163 60-313 5-205 (208)
71 1vg8_A RAS-related protein RAB 99.9 4E-26 1.4E-30 219.4 18.2 169 59-314 5-177 (207)
72 2gf0_A GTP-binding protein DI- 99.9 4.6E-26 1.6E-30 217.3 18.2 165 60-312 6-171 (199)
73 4gzl_A RAS-related C3 botulinu 99.9 1.2E-26 4E-31 225.0 14.3 175 60-310 28-203 (204)
74 3bwd_D RAC-like GTP-binding pr 99.9 3.6E-27 1.2E-31 221.5 9.3 173 60-310 6-179 (182)
75 2gco_A H9, RHO-related GTP-bin 99.9 6.6E-26 2.3E-30 218.7 18.2 177 59-311 22-199 (201)
76 3cph_A RAS-related protein SEC 99.9 8.2E-26 2.8E-30 218.2 18.6 167 59-314 17-184 (213)
77 2yc2_C IFT27, small RAB-relate 99.9 1.1E-26 3.8E-31 222.8 11.7 168 60-314 18-194 (208)
78 4djt_A GTP-binding nuclear pro 99.9 6.2E-26 2.1E-30 220.8 14.5 170 58-315 7-178 (218)
79 4bas_A ADP-ribosylation factor 99.9 1.3E-25 4.5E-30 214.2 16.4 174 56-315 11-192 (199)
80 2fv8_A H6, RHO-related GTP-bin 99.9 2E-25 7E-30 216.2 17.4 177 60-312 23-200 (207)
81 3t1o_A Gliding protein MGLA; G 99.9 9.3E-26 3.2E-30 214.0 13.5 165 58-314 10-194 (198)
82 3l0i_B RAS-related protein RAB 99.9 2.3E-27 7.7E-32 228.4 1.8 166 58-311 29-195 (199)
83 1zj6_A ADP-ribosylation factor 99.9 9.5E-25 3.3E-29 207.4 17.6 159 60-310 14-176 (187)
84 1f6b_A SAR1; gtpases, N-termin 99.9 5.3E-25 1.8E-29 212.6 15.3 159 60-310 23-197 (198)
85 1m2o_B GTP-binding protein SAR 99.9 1.1E-24 3.9E-29 208.7 17.4 158 60-309 21-189 (190)
86 3gj0_A GTP-binding nuclear pro 99.9 1.7E-25 5.9E-30 218.7 11.7 166 57-313 10-176 (221)
87 1r8s_A ADP-ribosylation factor 99.9 2.2E-24 7.4E-29 199.1 18.3 157 63-311 1-161 (164)
88 1zd9_A ADP-ribosylation factor 99.9 1.1E-24 3.9E-29 207.6 16.7 161 59-310 19-183 (188)
89 1fzq_A ADP-ribosylation factor 99.9 1.8E-24 6E-29 205.6 17.1 161 60-312 14-178 (181)
90 1upt_A ARL1, ADP-ribosylation 99.9 1.7E-24 5.9E-29 200.9 16.1 160 60-312 5-169 (171)
91 2h17_A ADP-ribosylation factor 99.9 1.2E-24 4E-29 206.0 14.8 161 57-309 16-180 (181)
92 1ksh_A ARF-like protein 2; sma 99.9 4.3E-24 1.5E-28 202.1 18.5 162 60-313 16-181 (186)
93 2h57_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 204.2 17.2 162 59-311 18-186 (190)
94 2f9l_A RAB11B, member RAS onco 99.9 8.5E-24 2.9E-28 203.6 19.4 167 60-314 3-170 (199)
95 3th5_A RAS-related C3 botulinu 99.9 2.1E-26 7.2E-31 222.1 0.0 175 60-310 28-203 (204)
96 2wkq_A NPH1-1, RAS-related C3 99.9 5E-24 1.7E-28 219.7 17.5 176 60-311 153-329 (332)
97 2b6h_A ADP-ribosylation factor 99.9 1E-23 3.6E-28 202.3 16.9 159 60-310 27-189 (192)
98 1moz_A ARL1, ADP-ribosylation 99.9 4.3E-24 1.5E-28 201.0 13.3 162 60-313 16-181 (183)
99 2zej_A Dardarin, leucine-rich 99.9 1.1E-24 3.8E-29 207.2 8.6 162 62-312 2-178 (184)
100 2fh5_B SR-beta, signal recogni 99.9 7.3E-24 2.5E-28 205.5 13.3 192 60-309 5-213 (214)
101 1oix_A RAS-related protein RAB 99.9 5.4E-23 1.8E-27 197.4 18.8 165 58-310 25-190 (191)
102 3llu_A RAS-related GTP-binding 99.9 4.9E-24 1.7E-28 204.7 10.9 170 56-310 14-195 (196)
103 2x77_A ADP-ribosylation factor 99.9 1.8E-23 6E-28 198.7 14.5 162 60-313 20-185 (189)
104 3c5h_A Glucocorticoid receptor 99.9 1.3E-24 4.6E-29 219.2 7.1 182 58-310 15-253 (255)
105 2wji_A Ferrous iron transport 99.9 1.7E-22 5.8E-27 188.7 16.2 159 61-310 2-163 (165)
106 2lkc_A Translation initiation 99.9 3.5E-22 1.2E-26 186.7 15.5 159 59-313 5-172 (178)
107 2gj8_A MNME, tRNA modification 99.9 3.1E-22 1.1E-26 188.9 12.4 160 61-310 3-164 (172)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 4.9E-22 1.7E-26 206.0 14.4 164 61-311 2-180 (307)
109 2qu8_A Putative nucleolar GTP- 99.9 3.2E-21 1.1E-25 189.9 18.7 170 59-314 26-207 (228)
110 3o47_A ADP-ribosylation factor 99.9 1.1E-21 3.9E-26 205.3 16.4 160 60-311 163-326 (329)
111 2cxx_A Probable GTP-binding pr 99.9 6.7E-22 2.3E-26 186.8 12.4 167 63-313 2-185 (190)
112 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-21 7.9E-26 213.1 17.7 163 58-312 318-484 (497)
113 1svi_A GTP-binding protein YSX 99.9 2.4E-21 8.3E-26 184.2 15.4 167 60-310 21-193 (195)
114 2dyk_A GTP-binding protein; GT 99.9 5.4E-21 1.9E-25 175.4 17.2 157 63-310 2-160 (161)
115 2wjg_A FEOB, ferrous iron tran 99.9 2.4E-21 8.1E-26 183.2 14.9 161 60-311 5-168 (188)
116 3pqc_A Probable GTP-binding pr 99.8 8.1E-21 2.8E-25 179.8 15.3 170 59-311 20-193 (195)
117 3iev_A GTP-binding protein ERA 99.8 8.3E-21 2.8E-25 197.0 16.1 211 60-352 8-231 (308)
118 3r7w_B Gtpase2, GTP-binding pr 99.8 1.4E-21 4.8E-26 204.2 7.6 163 64-312 1-174 (331)
119 3dpu_A RAB family protein; roc 99.8 2.5E-20 8.6E-25 207.1 13.3 162 59-312 38-208 (535)
120 2hjg_A GTP-binding protein ENG 99.8 7.5E-20 2.6E-24 198.4 15.7 171 60-313 173-350 (436)
121 3a1s_A Iron(II) transport prot 99.8 1E-19 3.6E-24 184.2 14.8 161 60-311 3-166 (258)
122 3b1v_A Ferrous iron uptake tra 99.8 8.4E-20 2.9E-24 186.5 14.0 158 61-310 2-162 (272)
123 4dhe_A Probable GTP-binding pr 99.8 1.9E-19 6.6E-24 175.2 13.3 172 60-311 27-210 (223)
124 4dcu_A GTP-binding protein ENG 99.8 3E-19 1E-23 194.7 15.6 175 59-316 192-373 (456)
125 1nrj_B SR-beta, signal recogni 99.8 5.2E-20 1.8E-24 178.9 7.8 145 59-298 9-170 (218)
126 3gee_A MNME, tRNA modification 99.8 3.7E-19 1.3E-23 195.3 14.3 164 61-311 232-397 (476)
127 1wf3_A GTP-binding protein; GT 99.8 8.7E-19 3E-23 181.5 16.1 165 60-311 5-172 (301)
128 3k53_A Ferrous iron transport 99.8 5.7E-19 1.9E-23 179.2 13.9 161 61-311 2-165 (271)
129 3iby_A Ferrous iron transport 99.8 1.5E-19 5E-24 183.0 9.4 160 63-309 2-164 (256)
130 3i8s_A Ferrous iron transport 99.8 3.2E-19 1.1E-23 181.9 11.8 163 61-310 2-167 (274)
131 1mky_A Probable GTP-binding pr 99.8 2.9E-18 1E-22 186.1 17.9 162 63-312 2-166 (439)
132 1xzp_A Probable tRNA modificat 99.8 1.2E-18 4.1E-23 191.4 14.6 158 62-311 243-404 (482)
133 2e87_A Hypothetical protein PH 99.7 1.7E-17 5.8E-22 175.3 17.8 170 60-313 165-337 (357)
134 1lnz_A SPO0B-associated GTP-bi 99.7 2.8E-18 9.5E-23 180.8 11.3 162 63-311 159-329 (342)
135 3qq5_A Small GTP-binding prote 99.7 1.2E-18 4.1E-23 188.5 8.2 163 58-310 30-194 (423)
136 1mky_A Probable GTP-binding pr 99.7 3.1E-17 1.1E-21 178.1 18.7 171 60-313 178-356 (439)
137 2hjg_A GTP-binding protein ENG 99.7 4.9E-18 1.7E-22 184.2 10.9 160 62-311 3-164 (436)
138 3geh_A MNME, tRNA modification 99.7 5.4E-18 1.9E-22 185.3 10.3 158 61-310 223-382 (462)
139 3sjy_A Translation initiation 99.7 1.4E-16 4.9E-21 171.0 18.1 165 59-310 5-190 (403)
140 1cip_A Protein (guanine nucleo 99.7 3.1E-17 1E-21 173.6 11.9 122 176-313 204-345 (353)
141 2qtf_A Protein HFLX, GTP-bindi 99.7 1.5E-16 5E-21 169.0 16.6 170 64-313 181-355 (364)
142 2xtz_A Guanine nucleotide-bind 99.7 1.6E-17 5.6E-22 175.7 8.5 128 176-313 194-346 (354)
143 3lxx_A GTPase IMAP family memb 99.7 3E-16 1E-20 155.6 16.3 180 59-312 26-214 (239)
144 3t5d_A Septin-7; GTP-binding p 99.7 1.4E-16 4.7E-21 162.0 13.2 168 60-310 6-202 (274)
145 2xtp_A GTPase IMAP family memb 99.7 1.6E-16 5.6E-21 159.3 13.2 182 59-313 19-209 (260)
146 1s0u_A EIF-2-gamma, translatio 99.7 7.6E-16 2.6E-20 165.5 18.3 164 60-310 6-196 (408)
147 2ged_A SR-beta, signal recogni 99.7 4.5E-17 1.6E-21 154.6 6.2 115 60-237 46-171 (193)
148 1ega_A Protein (GTP-binding pr 99.7 1.5E-16 5.2E-21 164.4 10.6 165 61-311 7-174 (301)
149 3ohm_A Guanine nucleotide-bind 99.7 1E-16 3.5E-21 167.7 9.4 124 176-314 178-320 (327)
150 4dcu_A GTP-binding protein ENG 99.7 1.3E-16 4.5E-21 173.9 10.6 163 59-311 20-184 (456)
151 3cb4_D GTP-binding protein LEP 99.6 1.1E-15 3.6E-20 172.0 16.5 157 61-310 3-180 (599)
152 2ywe_A GTP-binding protein LEP 99.6 1.5E-15 5.1E-20 170.7 17.5 157 60-310 4-182 (600)
153 3p26_A Elongation factor 1 alp 99.6 5.3E-16 1.8E-20 170.4 13.3 118 60-237 31-186 (483)
154 2qag_A Septin-2, protein NEDD5 99.6 1.3E-16 4.6E-21 169.1 8.2 168 60-313 35-234 (361)
155 1kk1_A EIF2gamma; initiation o 99.6 1.4E-15 4.9E-20 163.4 16.4 166 58-310 6-198 (410)
156 4fid_A G protein alpha subunit 99.6 5.1E-16 1.7E-20 163.2 12.5 121 176-312 172-328 (340)
157 1wb1_A Translation elongation 99.6 9.1E-16 3.1E-20 168.6 14.0 161 60-311 17-188 (482)
158 1azs_C GS-alpha; complex (lyas 99.6 1.5E-15 5.3E-20 162.9 15.0 136 176-313 228-386 (402)
159 2aka_B Dynamin-1; fusion prote 99.6 9.8E-16 3.3E-20 156.1 12.3 99 177-310 150-251 (299)
160 3izy_P Translation initiation 99.6 2.7E-17 9.1E-22 182.6 0.5 158 61-310 3-166 (537)
161 3lxw_A GTPase IMAP family memb 99.6 4.1E-15 1.4E-19 149.2 16.1 176 60-312 19-208 (247)
162 3j2k_7 ERF3, eukaryotic polype 99.6 3.3E-15 1.1E-19 162.3 16.0 160 59-304 14-217 (439)
163 2c78_A Elongation factor TU-A; 99.6 3.7E-15 1.2E-19 160.0 13.8 115 60-236 9-142 (405)
164 1pui_A ENGB, probable GTP-bind 99.6 4.7E-15 1.6E-19 142.7 12.5 169 60-310 24-197 (210)
165 3tr5_A RF-3, peptide chain rel 99.6 1.2E-14 4.1E-19 161.3 15.6 115 61-237 12-149 (528)
166 1jny_A EF-1-alpha, elongation 99.6 1.2E-15 4.1E-20 165.4 6.5 162 60-304 4-205 (435)
167 1g7s_A Translation initiation 99.6 2.3E-15 7.7E-20 169.3 8.6 115 60-237 3-137 (594)
168 1zun_B Sulfate adenylate trans 99.6 7.6E-15 2.6E-19 159.1 12.4 158 60-305 22-217 (434)
169 2elf_A Protein translation elo 99.6 8.5E-15 2.9E-19 155.8 12.4 149 64-312 23-180 (370)
170 1d2e_A Elongation factor TU (E 99.6 1.1E-14 3.7E-19 156.1 12.9 160 61-310 2-193 (397)
171 3izq_1 HBS1P, elongation facto 99.6 3.3E-15 1.1E-19 168.6 8.7 161 59-303 164-363 (611)
172 1zo1_I IF2, translation initia 99.6 4.2E-16 1.4E-20 171.7 1.2 156 61-308 3-163 (501)
173 1u0l_A Probable GTPase ENGC; p 99.6 6E-16 2.1E-20 159.9 2.3 135 77-308 32-169 (301)
174 3def_A T7I23.11 protein; chlor 99.5 4.3E-14 1.5E-18 142.7 14.9 127 60-237 34-166 (262)
175 2j69_A Bacterial dynamin-like 99.5 1.1E-13 3.7E-18 158.5 16.8 54 180-237 192-245 (695)
176 1jwy_B Dynamin A GTPase domain 99.5 1.6E-13 5.6E-18 141.0 15.6 58 176-237 155-213 (315)
177 3t34_A Dynamin-related protein 99.5 4.6E-14 1.6E-18 149.0 11.5 99 177-310 161-259 (360)
178 1f60_A Elongation factor EEF1A 99.5 1E-14 3.5E-19 159.2 6.6 155 60-302 5-202 (458)
179 2qnr_A Septin-2, protein NEDD5 99.5 1.3E-14 4.6E-19 149.9 6.7 175 60-311 16-213 (301)
180 1r5b_A Eukaryotic peptide chai 99.5 7.3E-15 2.5E-19 160.8 4.7 161 60-303 41-243 (467)
181 3avx_A Elongation factor TS, e 99.5 3.9E-14 1.3E-18 167.1 9.9 165 58-310 292-484 (1289)
182 2dy1_A Elongation factor G; tr 99.5 3.1E-13 1.1E-17 154.0 16.6 116 60-235 7-139 (665)
183 1udx_A The GTP-binding protein 99.5 2.3E-13 7.7E-18 146.9 14.6 167 63-313 158-326 (416)
184 1zcb_A G alpha I/13; GTP-bindi 99.5 6.9E-14 2.3E-18 148.4 9.9 122 176-313 212-354 (362)
185 3mca_A HBS1, elongation factor 99.5 2.4E-15 8.2E-20 169.2 -2.2 116 60-236 175-329 (592)
186 1wxq_A GTP-binding protein; st 99.5 3.9E-14 1.3E-18 152.0 7.0 58 63-120 1-81 (397)
187 1h65_A Chloroplast outer envel 99.5 3.2E-13 1.1E-17 136.7 13.3 126 60-237 37-169 (270)
188 1dar_A EF-G, elongation factor 99.4 1.8E-12 6.3E-17 148.2 19.9 115 60-237 10-144 (691)
189 2h5e_A Peptide chain release f 99.4 5.7E-13 2E-17 148.0 14.1 116 60-237 11-149 (529)
190 2hf9_A Probable hydrogenase ni 99.4 2.4E-15 8.4E-20 146.8 -4.7 59 222-311 164-223 (226)
191 2qag_C Septin-7; cell cycle, c 99.4 1.1E-13 3.8E-18 149.3 5.9 183 59-310 28-225 (418)
192 2rdo_7 EF-G, elongation factor 99.4 6.7E-12 2.3E-16 143.9 19.7 117 60-237 8-149 (704)
193 2xex_A Elongation factor G; GT 99.4 6E-12 2E-16 144.0 19.2 115 60-237 8-142 (693)
194 2x2e_A Dynamin-1; nitration, h 99.4 2.3E-13 7.9E-18 143.4 5.6 29 60-88 29-57 (353)
195 1jal_A YCHF protein; nucleotid 99.4 3E-12 1E-16 135.6 13.2 58 63-120 3-76 (363)
196 2wsm_A Hydrogenase expression/ 99.4 5.9E-13 2E-17 129.3 6.9 84 188-311 129-213 (221)
197 3p32_A Probable GTPase RV1496/ 99.3 1.5E-12 5.1E-17 137.4 6.8 89 186-312 190-284 (355)
198 4a9a_A Ribosome-interacting GT 99.3 5.6E-11 1.9E-15 126.5 17.3 124 60-235 70-195 (376)
199 2qpt_A EH domain-containing pr 99.3 5.9E-12 2E-16 140.4 9.8 56 178-237 178-233 (550)
200 2dby_A GTP-binding protein; GD 99.3 1.2E-11 4E-16 131.5 11.4 58 63-120 2-79 (368)
201 1n0u_A EF-2, elongation factor 99.2 2E-11 6.8E-16 142.5 11.9 117 60-236 17-164 (842)
202 1yrb_A ATP(GTP)binding protein 99.2 9.4E-12 3.2E-16 124.1 7.6 26 286-311 231-256 (262)
203 2www_A Methylmalonic aciduria 99.2 4.5E-12 1.6E-16 133.6 5.3 88 186-311 185-278 (349)
204 3zvr_A Dynamin-1; hydrolase, D 99.2 6.6E-11 2.3E-15 135.8 11.9 96 178-309 176-275 (772)
205 2p67_A LAO/AO transport system 99.1 3.8E-11 1.3E-15 126.0 6.1 88 186-311 167-260 (341)
206 3vqt_A RF-3, peptide chain rel 99.0 4.5E-09 1.5E-13 117.1 17.3 114 61-237 30-167 (548)
207 2yv5_A YJEQ protein; hydrolase 99.0 6.1E-10 2.1E-14 115.0 9.1 96 176-307 67-164 (302)
208 2qm8_A GTPase/ATPase; G protei 98.9 2.4E-09 8.2E-14 112.3 8.5 27 285-311 234-260 (337)
209 2ohf_A Protein OLA1, GTP-bindi 98.8 3.7E-09 1.2E-13 113.1 7.8 98 61-206 21-134 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 6.3E-08 2.2E-12 103.6 15.4 60 61-120 19-95 (392)
211 3j25_A Tetracycline resistance 98.8 5.5E-09 1.9E-13 118.5 6.9 115 63-237 3-134 (638)
212 4fn5_A EF-G 1, elongation fact 98.7 2.5E-07 8.6E-12 106.1 18.6 118 60-237 11-152 (709)
213 3l82_B F-box only protein 4; T 98.6 2.2E-08 7.6E-13 98.0 5.9 106 172-311 109-222 (227)
214 3h2y_A GTPase family protein; 98.5 1.8E-07 6.3E-12 99.1 8.9 97 174-310 55-158 (368)
215 3l2o_B F-box only protein 4; s 98.5 1.7E-07 5.9E-12 95.9 8.1 105 173-311 195-307 (312)
216 3ec1_A YQEH GTPase; atnos1, at 98.4 6.6E-07 2.3E-11 94.8 8.9 97 174-310 57-160 (369)
217 3ec1_A YQEH GTPase; atnos1, at 98.3 1.3E-07 4.4E-12 100.3 0.2 53 63-120 163-222 (369)
218 3h2y_A GTPase family protein; 98.1 1.4E-07 4.8E-12 100.0 -2.4 53 63-120 161-221 (368)
219 2j37_W Signal recognition part 98.1 2.9E-06 9.8E-11 93.5 7.3 23 61-83 100-122 (504)
220 1puj_A YLQF, conserved hypothe 98.0 1.2E-05 4.2E-10 82.0 8.9 93 177-312 12-106 (282)
221 2qag_B Septin-6, protein NEDD5 98.0 3.2E-05 1.1E-09 83.4 11.6 60 61-120 41-105 (427)
222 3sop_A Neuronal-specific septi 98.0 2.2E-05 7.6E-10 79.6 9.7 24 62-85 2-25 (270)
223 1tq4_A IIGP1, interferon-induc 97.9 0.00012 4.2E-09 78.6 15.1 24 62-85 69-92 (413)
224 1puj_A YLQF, conserved hypothe 97.7 3.2E-05 1.1E-09 78.9 5.6 56 60-120 118-175 (282)
225 1f5n_A Interferon-induced guan 97.6 0.00013 4.4E-09 81.8 9.5 59 60-120 36-101 (592)
226 3cnl_A YLQF, putative uncharac 97.6 2E-05 6.7E-10 79.6 2.7 53 63-120 100-154 (262)
227 3dm5_A SRP54, signal recogniti 97.3 0.00069 2.4E-08 73.4 10.4 23 61-83 99-121 (443)
228 3cnl_A YLQF, putative uncharac 97.3 0.00012 4.1E-09 73.8 3.7 84 181-308 14-97 (262)
229 2v3c_C SRP54, signal recogniti 97.2 0.00042 1.4E-08 74.8 6.8 23 62-84 99-121 (432)
230 3szr_A Interferon-induced GTP- 97.1 0.0015 5.3E-08 73.4 10.3 23 64-86 47-69 (608)
231 1t9h_A YLOQ, probable GTPase E 96.9 0.00023 7.9E-09 73.6 1.3 85 184-304 82-169 (307)
232 1bif_A 6-phosphofructo-2-kinas 96.7 0.00029 1E-08 76.6 0.6 46 183-233 115-160 (469)
233 2rcn_A Probable GTPase ENGC; Y 96.6 0.0062 2.1E-07 64.1 10.0 82 186-305 128-212 (358)
234 3kl4_A SRP54, signal recogniti 96.5 0.0017 5.9E-08 70.1 4.6 23 61-83 96-118 (433)
235 1j8m_F SRP54, signal recogniti 96.4 0.005 1.7E-07 63.1 7.4 22 62-83 98-119 (297)
236 3q5d_A Atlastin-1; G protein, 95.9 0.0071 2.4E-07 65.5 5.9 25 60-84 65-89 (447)
237 1kgd_A CASK, peripheral plasma 95.0 0.012 4E-07 55.1 3.0 22 64-85 7-28 (180)
238 1t9h_A YLOQ, probable GTPase E 94.7 0.012 4.2E-07 60.6 2.7 23 63-85 174-196 (307)
239 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.3E-07 55.3 3.0 21 64-84 6-26 (198)
240 1ye8_A Protein THEP1, hypothet 94.6 0.017 5.9E-07 54.4 3.3 22 64-85 2-23 (178)
241 3a00_A Guanylate kinase, GMP k 94.2 0.021 7.3E-07 53.5 2.9 21 65-85 4-24 (186)
242 3ney_A 55 kDa erythrocyte memb 94.2 0.022 7.5E-07 54.9 3.0 24 62-85 19-42 (197)
243 3tr0_A Guanylate kinase, GMP k 94.2 0.022 7.7E-07 53.5 3.1 22 64-85 9-30 (205)
244 1zp6_A Hypothetical protein AT 94.0 0.027 9.1E-07 52.4 3.1 23 63-85 10-32 (191)
245 1znw_A Guanylate kinase, GMP k 94.0 0.026 9E-07 53.8 3.0 22 64-85 22-43 (207)
246 1ex7_A Guanylate kinase; subst 93.9 0.028 9.6E-07 53.6 3.2 21 65-85 4-24 (186)
247 1s96_A Guanylate kinase, GMP k 93.9 0.027 9.4E-07 54.9 3.1 23 63-85 17-39 (219)
248 2chg_A Replication factor C sm 93.9 0.2 6.8E-06 46.5 9.0 20 65-84 41-60 (226)
249 1z6g_A Guanylate kinase; struc 93.9 0.027 9.4E-07 54.5 3.0 22 64-85 25-46 (218)
250 3tau_A Guanylate kinase, GMP k 93.8 0.029 1E-06 53.7 3.1 23 63-85 9-31 (208)
251 4gp7_A Metallophosphoesterase; 93.7 0.028 9.6E-07 52.1 2.6 20 64-83 11-30 (171)
252 2qor_A Guanylate kinase; phosp 93.5 0.038 1.3E-06 52.5 3.2 23 63-85 13-35 (204)
253 3c8u_A Fructokinase; YP_612366 93.4 0.042 1.4E-06 52.4 3.4 25 60-84 20-44 (208)
254 2rcn_A Probable GTPase ENGC; Y 93.3 0.042 1.4E-06 57.8 3.4 23 64-86 217-239 (358)
255 3kb2_A SPBC2 prophage-derived 93.2 0.048 1.6E-06 49.4 3.3 21 64-84 3-23 (173)
256 2j41_A Guanylate kinase; GMP, 93.2 0.043 1.5E-06 51.5 3.0 24 63-86 7-30 (207)
257 1kag_A SKI, shikimate kinase I 93.1 0.046 1.6E-06 49.9 3.1 21 64-84 6-26 (173)
258 3lw7_A Adenylate kinase relate 93.1 0.048 1.6E-06 49.2 3.0 20 63-82 2-21 (179)
259 1ly1_A Polynucleotide kinase; 92.9 0.054 1.9E-06 49.5 3.2 22 63-84 3-24 (181)
260 1htw_A HI0065; nucleotide-bind 92.8 0.053 1.8E-06 50.2 3.0 23 64-86 35-57 (158)
261 2bdt_A BH3686; alpha-beta prot 92.8 0.054 1.8E-06 50.5 3.1 21 64-84 4-24 (189)
262 3asz_A Uridine kinase; cytidin 92.8 0.061 2.1E-06 51.0 3.5 23 62-84 6-28 (211)
263 2bbw_A Adenylate kinase 4, AK4 92.7 0.062 2.1E-06 52.6 3.4 21 63-83 28-48 (246)
264 3tif_A Uncharacterized ABC tra 92.6 0.052 1.8E-06 53.4 2.8 21 64-84 33-53 (235)
265 4eun_A Thermoresistant glucoki 92.6 0.058 2E-06 51.0 3.1 22 63-84 30-51 (200)
266 1kht_A Adenylate kinase; phosp 92.5 0.07 2.4E-06 49.2 3.4 22 63-84 4-25 (192)
267 2yv5_A YJEQ protein; hydrolase 92.5 0.059 2E-06 55.0 3.1 21 63-83 166-186 (302)
268 3fb4_A Adenylate kinase; psych 92.5 0.067 2.3E-06 50.8 3.3 21 64-84 2-22 (216)
269 1np6_A Molybdopterin-guanine d 92.5 0.063 2.1E-06 50.5 3.1 23 63-85 7-29 (174)
270 1nks_A Adenylate kinase; therm 92.5 0.069 2.4E-06 49.2 3.3 21 64-84 3-23 (194)
271 1knq_A Gluconate kinase; ALFA/ 92.5 0.092 3.1E-06 48.1 4.1 22 63-84 9-30 (175)
272 1u0l_A Probable GTPase ENGC; p 92.4 0.053 1.8E-06 55.2 2.7 24 63-86 170-193 (301)
273 2jaq_A Deoxyguanosine kinase; 92.4 0.073 2.5E-06 49.7 3.4 21 64-84 2-22 (205)
274 2qt1_A Nicotinamide riboside k 92.4 0.1 3.5E-06 49.4 4.4 26 60-85 19-44 (207)
275 2wwf_A Thymidilate kinase, put 92.4 0.097 3.3E-06 49.3 4.3 23 62-84 10-32 (212)
276 3t61_A Gluconokinase; PSI-biol 92.4 0.064 2.2E-06 50.6 3.0 22 63-84 19-40 (202)
277 2pcj_A ABC transporter, lipopr 92.4 0.059 2E-06 52.5 2.8 22 64-85 32-53 (224)
278 3dl0_A Adenylate kinase; phosp 92.3 0.073 2.5E-06 50.7 3.3 21 64-84 2-22 (216)
279 2cdn_A Adenylate kinase; phosp 92.3 0.091 3.1E-06 49.5 3.9 25 60-84 18-42 (201)
280 2ehv_A Hypothetical protein PH 92.3 0.07 2.4E-06 51.5 3.2 21 64-84 32-52 (251)
281 2if2_A Dephospho-COA kinase; a 92.2 0.072 2.5E-06 50.1 3.2 22 63-84 2-23 (204)
282 1ukz_A Uridylate kinase; trans 92.2 0.11 3.8E-06 48.8 4.4 23 62-84 15-37 (203)
283 4a74_A DNA repair and recombin 92.2 0.067 2.3E-06 50.9 2.9 24 63-86 26-49 (231)
284 2i3b_A HCR-ntpase, human cance 92.2 0.064 2.2E-06 51.0 2.7 22 64-85 3-24 (189)
285 1qhx_A CPT, protein (chloramph 92.2 0.09 3.1E-06 48.2 3.6 22 63-84 4-25 (178)
286 3vaa_A Shikimate kinase, SK; s 92.1 0.082 2.8E-06 49.9 3.4 22 63-84 26-47 (199)
287 2onk_A Molybdate/tungstate ABC 92.1 0.074 2.5E-06 52.6 3.2 22 64-85 26-47 (240)
288 1cke_A CK, MSSA, protein (cyti 92.1 0.08 2.7E-06 50.6 3.3 22 63-84 6-27 (227)
289 1sxj_E Activator 1 40 kDa subu 92.0 0.97 3.3E-05 46.0 11.7 21 65-85 39-59 (354)
290 3lnc_A Guanylate kinase, GMP k 92.0 0.051 1.7E-06 52.6 1.8 22 64-85 29-51 (231)
291 2f1r_A Molybdopterin-guanine d 92.0 0.048 1.6E-06 51.2 1.6 21 64-84 4-24 (171)
292 3uie_A Adenylyl-sulfate kinase 92.0 0.076 2.6E-06 50.2 3.0 22 63-84 26-47 (200)
293 2rhm_A Putative kinase; P-loop 92.0 0.11 3.7E-06 48.1 4.0 23 62-84 5-27 (193)
294 1tev_A UMP-CMP kinase; ploop, 92.0 0.096 3.3E-06 48.3 3.6 23 62-84 3-25 (196)
295 1b0u_A Histidine permease; ABC 91.9 0.072 2.5E-06 53.3 2.9 22 64-85 34-55 (262)
296 2eyu_A Twitching motility prot 91.9 0.075 2.6E-06 53.2 3.0 22 63-84 26-47 (261)
297 2cbz_A Multidrug resistance-as 91.9 0.079 2.7E-06 52.1 3.1 21 64-84 33-53 (237)
298 2plr_A DTMP kinase, probable t 91.9 0.11 3.6E-06 48.8 3.8 23 62-84 4-26 (213)
299 3cm0_A Adenylate kinase; ATP-b 91.8 0.1 3.6E-06 48.1 3.7 23 62-84 4-26 (186)
300 1mv5_A LMRA, multidrug resista 91.8 0.082 2.8E-06 52.1 3.1 22 64-85 30-51 (243)
301 2ff7_A Alpha-hemolysin translo 91.8 0.082 2.8E-06 52.4 3.1 22 64-85 37-58 (247)
302 3gfo_A Cobalt import ATP-bindi 91.8 0.076 2.6E-06 53.6 2.9 22 64-85 36-57 (275)
303 1sgw_A Putative ABC transporte 91.8 0.079 2.7E-06 51.5 2.9 22 64-85 37-58 (214)
304 1g6h_A High-affinity branched- 91.7 0.078 2.7E-06 52.8 2.8 22 64-85 35-56 (257)
305 3ec2_A DNA replication protein 91.7 0.071 2.4E-06 49.3 2.4 23 63-85 39-61 (180)
306 4g1u_C Hemin import ATP-bindin 91.7 0.08 2.7E-06 53.1 2.9 22 64-85 39-60 (266)
307 2pze_A Cystic fibrosis transme 91.6 0.089 3.1E-06 51.4 3.1 22 64-85 36-57 (229)
308 2v9p_A Replication protein E1; 91.6 0.088 3E-06 54.1 3.2 22 64-85 128-149 (305)
309 1jjv_A Dephospho-COA kinase; P 91.6 0.11 3.7E-06 49.1 3.6 22 63-84 3-24 (206)
310 3trf_A Shikimate kinase, SK; a 91.6 0.1 3.5E-06 48.2 3.4 22 63-84 6-27 (185)
311 2d2e_A SUFC protein; ABC-ATPas 91.5 0.092 3.2E-06 52.0 3.1 22 64-85 31-52 (250)
312 2zu0_C Probable ATP-dependent 91.5 0.094 3.2E-06 52.6 3.2 22 64-85 48-69 (267)
313 1ji0_A ABC transporter; ATP bi 91.5 0.086 3E-06 51.9 2.8 22 64-85 34-55 (240)
314 2olj_A Amino acid ABC transpor 91.4 0.087 3E-06 52.8 2.9 22 64-85 52-73 (263)
315 1lw7_A Transcriptional regulat 91.4 0.091 3.1E-06 54.8 3.0 24 62-85 170-193 (365)
316 4ido_A Atlastin-1; GTPase, GTP 91.3 0.55 1.9E-05 50.8 9.2 24 60-83 65-88 (457)
317 2qi9_C Vitamin B12 import ATP- 91.3 0.092 3.1E-06 52.2 2.9 22 64-85 28-49 (249)
318 2ghi_A Transport protein; mult 91.3 0.097 3.3E-06 52.3 3.1 22 64-85 48-69 (260)
319 1e4v_A Adenylate kinase; trans 91.3 0.11 3.7E-06 49.6 3.2 21 64-84 2-22 (214)
320 1uf9_A TT1252 protein; P-loop, 91.3 0.13 4.5E-06 48.0 3.8 26 60-85 6-31 (203)
321 3b85_A Phosphate starvation-in 91.3 0.084 2.9E-06 51.0 2.5 22 64-85 24-45 (208)
322 1vpl_A ABC transporter, ATP-bi 91.2 0.095 3.2E-06 52.3 2.9 22 64-85 43-64 (256)
323 2ixe_A Antigen peptide transpo 91.2 0.1 3.4E-06 52.5 3.1 22 64-85 47-68 (271)
324 2ihy_A ABC transporter, ATP-bi 91.2 0.1 3.5E-06 52.7 3.1 22 64-85 49-70 (279)
325 1jbk_A CLPB protein; beta barr 91.1 0.11 3.8E-06 47.1 3.1 23 63-85 44-66 (195)
326 1y63_A LMAJ004144AAA protein; 91.1 0.15 5E-06 47.6 3.9 23 62-84 10-32 (184)
327 2v54_A DTMP kinase, thymidylat 91.0 0.14 4.8E-06 47.9 3.6 23 63-85 5-27 (204)
328 3tlx_A Adenylate kinase 2; str 91.0 0.15 5.1E-06 50.0 4.0 24 61-84 28-51 (243)
329 1gtv_A TMK, thymidylate kinase 90.9 0.06 2.1E-06 50.9 1.1 21 64-84 2-22 (214)
330 2nq2_C Hypothetical ABC transp 90.9 0.1 3.6E-06 51.8 2.8 22 64-85 33-54 (253)
331 1zd8_A GTP:AMP phosphotransfer 90.9 0.13 4.3E-06 49.6 3.3 22 63-84 8-29 (227)
332 2yz2_A Putative ABC transporte 90.8 0.11 3.7E-06 52.1 2.8 22 64-85 35-56 (266)
333 3iij_A Coilin-interacting nucl 90.8 0.14 4.8E-06 47.2 3.4 23 62-84 11-33 (180)
334 1aky_A Adenylate kinase; ATP:A 90.7 0.14 4.9E-06 48.9 3.5 22 63-84 5-26 (220)
335 2pt5_A Shikimate kinase, SK; a 90.7 0.14 4.9E-06 46.3 3.4 21 64-84 2-22 (168)
336 3aez_A Pantothenate kinase; tr 90.7 0.17 5.9E-06 51.9 4.3 25 60-84 88-112 (312)
337 2c95_A Adenylate kinase 1; tra 90.7 0.15 5.1E-06 47.3 3.5 22 63-84 10-31 (196)
338 3be4_A Adenylate kinase; malar 90.6 0.14 4.7E-06 49.1 3.3 23 62-84 5-27 (217)
339 2jeo_A Uridine-cytidine kinase 90.6 0.15 5.2E-06 49.8 3.7 23 62-84 25-47 (245)
340 3nh6_A ATP-binding cassette SU 90.6 0.094 3.2E-06 53.9 2.2 21 64-84 82-102 (306)
341 1qf9_A UMP/CMP kinase, protein 90.6 0.18 6.2E-06 46.3 4.0 22 63-84 7-28 (194)
342 1via_A Shikimate kinase; struc 90.5 0.13 4.3E-06 47.3 2.8 21 64-84 6-26 (175)
343 1odf_A YGR205W, hypothetical 3 90.5 0.18 6.1E-06 51.2 4.1 25 60-84 29-53 (290)
344 2pjz_A Hypothetical protein ST 90.5 0.13 4.5E-06 51.5 3.1 22 64-85 32-53 (263)
345 2z0h_A DTMP kinase, thymidylat 90.4 0.15 5.2E-06 47.3 3.3 21 64-84 2-22 (197)
346 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.14 4.8E-06 48.5 3.1 22 64-85 25-46 (235)
347 3sr0_A Adenylate kinase; phosp 90.3 0.15 5.2E-06 49.1 3.3 21 64-84 2-22 (206)
348 1zak_A Adenylate kinase; ATP:A 90.3 0.13 4.5E-06 49.2 2.9 22 63-84 6-27 (222)
349 1nn5_A Similar to deoxythymidy 90.3 0.16 5.6E-06 47.7 3.5 23 62-84 9-31 (215)
350 2yvu_A Probable adenylyl-sulfa 90.3 0.22 7.6E-06 46.1 4.3 24 61-84 12-35 (186)
351 1rz3_A Hypothetical protein rb 90.2 0.19 6.4E-06 47.6 3.8 24 61-84 21-44 (201)
352 2pbr_A DTMP kinase, thymidylat 90.2 0.17 5.7E-06 46.7 3.3 21 64-84 2-22 (195)
353 2xb4_A Adenylate kinase; ATP-b 90.1 0.16 5.6E-06 48.9 3.4 21 64-84 2-22 (223)
354 3fvq_A Fe(3+) IONS import ATP- 90.1 0.14 4.8E-06 53.8 3.1 37 64-110 32-68 (359)
355 1rj9_A FTSY, signal recognitio 90.1 0.14 4.8E-06 52.4 3.0 23 62-84 102-124 (304)
356 2bwj_A Adenylate kinase 5; pho 90.1 0.17 5.7E-06 47.1 3.3 22 63-84 13-34 (199)
357 1ixz_A ATP-dependent metallopr 90.0 0.15 5.2E-06 49.8 3.0 21 65-85 52-72 (254)
358 1ak2_A Adenylate kinase isoenz 90.0 0.18 6.3E-06 48.7 3.6 23 62-84 16-38 (233)
359 1gvn_B Zeta; postsegregational 90.0 0.18 6.2E-06 51.0 3.7 24 61-84 32-55 (287)
360 2kjq_A DNAA-related protein; s 89.9 0.11 3.8E-06 47.2 1.9 22 64-85 38-59 (149)
361 3cwq_A Para family chromosome 89.9 0.57 2E-05 44.6 7.0 50 183-236 85-134 (209)
362 2gza_A Type IV secretion syste 89.9 0.15 5E-06 53.4 3.0 23 63-85 176-198 (361)
363 2bbs_A Cystic fibrosis transme 89.9 0.15 5.1E-06 51.9 3.0 22 64-85 66-87 (290)
364 1xjc_A MOBB protein homolog; s 89.9 0.17 5.9E-06 47.4 3.2 22 63-84 5-26 (169)
365 3tqc_A Pantothenate kinase; bi 89.8 0.21 7.1E-06 51.7 4.0 25 60-84 90-114 (321)
366 1z47_A CYSA, putative ABC-tran 89.8 0.16 5.5E-06 53.3 3.1 22 64-85 43-64 (355)
367 3jvv_A Twitching mobility prot 89.8 0.15 5.2E-06 53.4 3.0 21 64-84 125-145 (356)
368 1uj2_A Uridine-cytidine kinase 89.7 0.2 6.9E-06 49.2 3.7 24 61-84 21-44 (252)
369 4e22_A Cytidylate kinase; P-lo 89.6 0.2 6.9E-06 49.4 3.6 22 62-83 27-48 (252)
370 2yyz_A Sugar ABC transporter, 89.6 0.17 5.7E-06 53.2 3.1 22 64-85 31-52 (359)
371 1e6c_A Shikimate kinase; phosp 89.6 0.19 6.5E-06 45.6 3.2 21 64-84 4-24 (173)
372 2ze6_A Isopentenyl transferase 89.6 0.18 6.1E-06 49.9 3.2 21 64-84 3-23 (253)
373 2it1_A 362AA long hypothetical 89.6 0.17 5.9E-06 53.2 3.2 22 64-85 31-52 (362)
374 3rlf_A Maltose/maltodextrin im 89.5 0.17 5.9E-06 53.5 3.2 22 64-85 31-52 (381)
375 3b9q_A Chloroplast SRP recepto 89.5 0.17 5.8E-06 51.7 3.1 23 62-84 100-122 (302)
376 3tui_C Methionine import ATP-b 89.5 0.17 5.9E-06 53.2 3.2 22 64-85 56-77 (366)
377 3kta_A Chromosome segregation 89.4 0.19 6.5E-06 46.3 3.1 21 64-84 28-48 (182)
378 1g29_1 MALK, maltose transport 89.4 0.18 6E-06 53.2 3.1 22 64-85 31-52 (372)
379 2x8a_A Nuclear valosin-contain 89.4 0.18 6E-06 50.6 3.0 20 65-84 47-66 (274)
380 3e70_C DPA, signal recognition 89.3 0.18 6E-06 52.3 3.0 24 61-84 128-151 (328)
381 1sq5_A Pantothenate kinase; P- 89.3 0.23 8E-06 50.5 3.9 24 61-84 79-102 (308)
382 2cvh_A DNA repair and recombin 89.3 0.19 6.6E-06 47.3 3.1 21 64-84 22-42 (220)
383 1v43_A Sugar-binding transport 89.3 0.18 6.3E-06 53.1 3.2 22 64-85 39-60 (372)
384 2p65_A Hypothetical protein PF 89.2 0.17 5.8E-06 45.9 2.6 23 63-85 44-66 (187)
385 2ewv_A Twitching motility prot 89.2 0.19 6.4E-06 52.9 3.2 22 63-84 137-158 (372)
386 2vp4_A Deoxynucleoside kinase; 89.1 0.14 4.8E-06 49.6 2.0 25 61-85 19-43 (230)
387 1n0w_A DNA repair protein RAD5 89.1 0.21 7E-06 47.9 3.2 22 64-85 26-47 (243)
388 2pt7_A CAG-ALFA; ATPase, prote 89.1 0.16 5.5E-06 52.5 2.6 22 64-85 173-194 (330)
389 1vht_A Dephospho-COA kinase; s 89.1 0.26 8.9E-06 46.9 3.9 23 62-84 4-26 (218)
390 2vli_A Antibiotic resistance p 89.0 0.17 5.9E-06 46.4 2.4 22 63-84 6-27 (183)
391 2pez_A Bifunctional 3'-phospho 88.9 0.26 9E-06 45.3 3.6 23 62-84 5-27 (179)
392 1cr0_A DNA primase/helicase; R 88.9 0.19 6.6E-06 50.3 2.9 22 64-85 37-58 (296)
393 3d31_A Sulfate/molybdate ABC t 88.8 0.16 5.5E-06 53.1 2.3 22 64-85 28-49 (348)
394 2iyv_A Shikimate kinase, SK; t 88.8 0.23 7.8E-06 45.8 3.1 21 64-84 4-24 (184)
395 3bos_A Putative DNA replicatio 88.7 0.21 7.3E-06 47.3 3.0 22 63-84 53-74 (242)
396 1iy2_A ATP-dependent metallopr 88.7 0.21 7.3E-06 49.6 3.0 21 65-85 76-96 (278)
397 3a4m_A L-seryl-tRNA(SEC) kinas 88.6 0.27 9.3E-06 48.6 3.7 22 63-84 5-26 (260)
398 3gd7_A Fusion complex of cysti 88.5 0.21 7.3E-06 53.0 3.1 21 64-84 49-69 (390)
399 3co5_A Putative two-component 88.5 1.4 4.8E-05 39.1 8.2 21 64-84 29-49 (143)
400 3umf_A Adenylate kinase; rossm 88.5 0.3 1E-05 47.5 3.9 23 62-84 28-51 (217)
401 2p5t_B PEZT; postsegregational 88.1 0.23 7.9E-06 48.9 2.8 24 61-84 31-54 (253)
402 1njg_A DNA polymerase III subu 88.1 0.25 8.6E-06 46.3 3.0 22 64-85 47-68 (250)
403 1in4_A RUVB, holliday junction 87.9 0.24 8.3E-06 50.8 3.0 22 64-85 53-74 (334)
404 1m7g_A Adenylylsulfate kinase; 87.9 0.26 8.9E-06 46.8 3.0 22 63-84 26-47 (211)
405 2obl_A ESCN; ATPase, hydrolase 87.9 0.26 8.8E-06 51.4 3.2 23 63-85 72-94 (347)
406 1oxx_K GLCV, glucose, ABC tran 87.9 0.16 5.4E-06 53.2 1.6 22 64-85 33-54 (353)
407 1p9r_A General secretion pathw 87.9 0.24 8.2E-06 53.1 3.0 22 64-85 169-190 (418)
408 3r20_A Cytidylate kinase; stru 87.9 0.3 1E-05 48.2 3.4 24 61-84 8-31 (233)
409 1zcb_A G alpha I/13; GTP-bindi 87.8 0.3 1E-05 51.2 3.6 28 351-378 325-352 (362)
410 2og2_A Putative signal recogni 87.7 0.26 8.9E-06 51.7 3.1 23 62-84 157-179 (359)
411 4eaq_A DTMP kinase, thymidylat 87.7 0.39 1.3E-05 46.7 4.2 24 61-84 25-48 (229)
412 2w58_A DNAI, primosome compone 87.7 0.28 9.5E-06 46.0 3.0 23 63-85 55-77 (202)
413 1nij_A Hypothetical protein YJ 87.6 0.2 6.8E-06 51.4 2.1 23 63-85 5-27 (318)
414 1zuh_A Shikimate kinase; alpha 87.6 0.33 1.1E-05 44.1 3.4 22 63-84 8-29 (168)
415 1lv7_A FTSH; alpha/beta domain 87.6 0.28 9.5E-06 48.0 3.1 21 64-84 47-67 (257)
416 2f6r_A COA synthase, bifunctio 87.1 0.43 1.5E-05 47.9 4.2 23 61-83 74-96 (281)
417 3nwj_A ATSK2; P loop, shikimat 87.1 0.27 9.2E-06 48.9 2.7 22 63-84 49-70 (250)
418 2oap_1 GSPE-2, type II secreti 87.1 0.31 1E-05 53.6 3.3 22 64-85 262-283 (511)
419 2yhs_A FTSY, cell division pro 87.0 0.29 9.9E-06 53.6 3.0 24 61-84 292-315 (503)
420 2dr3_A UPF0273 protein PH0284; 86.9 0.33 1.1E-05 46.5 3.1 22 64-85 25-46 (247)
421 2dpy_A FLII, flagellum-specifi 86.9 0.31 1.1E-05 52.4 3.2 22 64-85 159-180 (438)
422 1ltq_A Polynucleotide kinase; 86.9 0.33 1.1E-05 48.5 3.2 22 63-84 3-24 (301)
423 2npi_A Protein CLP1; CLP1-PCF1 86.6 0.3 1E-05 52.9 2.9 23 63-85 139-161 (460)
424 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.41 1.4E-05 43.4 3.2 20 64-83 25-44 (149)
425 1nlf_A Regulatory protein REPA 86.2 0.36 1.2E-05 48.0 3.0 22 63-84 31-52 (279)
426 2qmh_A HPR kinase/phosphorylas 85.8 0.38 1.3E-05 46.6 2.8 24 62-85 34-57 (205)
427 3h4m_A Proteasome-activating n 85.7 0.39 1.3E-05 47.5 2.9 23 63-85 52-74 (285)
428 1yqt_A RNAse L inhibitor; ATP- 85.5 0.42 1.5E-05 52.7 3.4 24 63-86 48-71 (538)
429 2qz4_A Paraplegin; AAA+, SPG7, 85.5 0.42 1.4E-05 46.4 3.1 22 63-84 40-61 (262)
430 3b60_A Lipid A export ATP-bind 85.4 0.38 1.3E-05 53.4 3.0 22 64-85 371-392 (582)
431 2qby_A CDC6 homolog 1, cell di 85.4 0.4 1.4E-05 48.9 3.0 22 63-84 46-67 (386)
432 3b9p_A CG5977-PA, isoform A; A 85.3 0.41 1.4E-05 47.6 2.9 22 63-84 55-76 (297)
433 3qf7_A RAD50; ABC-ATPase, ATPa 85.2 0.43 1.5E-05 49.9 3.2 19 65-83 26-44 (365)
434 3b5x_A Lipid A export ATP-bind 85.2 0.43 1.5E-05 53.0 3.3 22 64-85 371-392 (582)
435 2grj_A Dephospho-COA kinase; T 85.1 0.56 1.9E-05 44.5 3.7 25 60-84 10-34 (192)
436 3euj_A Chromosome partition pr 85.1 0.42 1.4E-05 52.2 3.0 21 64-84 31-51 (483)
437 1q3t_A Cytidylate kinase; nucl 84.6 0.58 2E-05 45.2 3.6 25 60-84 14-38 (236)
438 3ake_A Cytidylate kinase; CMP 84.5 0.57 1.9E-05 43.7 3.4 21 64-84 4-24 (208)
439 3syl_A Protein CBBX; photosynt 84.5 0.61 2.1E-05 46.5 3.8 24 61-84 66-89 (309)
440 1svm_A Large T antigen; AAA+ f 84.3 0.48 1.6E-05 50.0 3.0 22 63-84 170-191 (377)
441 1l8q_A Chromosomal replication 84.3 0.48 1.6E-05 48.0 2.9 21 64-84 39-59 (324)
442 3n70_A Transport activator; si 84.3 0.57 1.9E-05 41.8 3.1 23 63-85 25-47 (145)
443 2qen_A Walker-type ATPase; unk 84.3 0.52 1.8E-05 47.4 3.2 22 64-85 33-54 (350)
444 2px0_A Flagellar biosynthesis 84.2 0.5 1.7E-05 48.0 3.0 23 62-84 105-127 (296)
445 2fna_A Conserved hypothetical 84.1 0.49 1.7E-05 47.7 2.9 22 64-85 32-53 (357)
446 1fnn_A CDC6P, cell division co 83.8 0.53 1.8E-05 48.3 3.0 22 64-85 46-67 (389)
447 3a8t_A Adenylate isopentenyltr 83.7 0.58 2E-05 48.7 3.3 22 63-84 41-62 (339)
448 1ofh_A ATP-dependent HSL prote 83.7 0.55 1.9E-05 46.6 3.0 22 63-84 51-72 (310)
449 3t15_A Ribulose bisphosphate c 83.7 0.54 1.8E-05 47.4 3.0 23 63-85 37-59 (293)
450 1p5z_B DCK, deoxycytidine kina 83.6 0.42 1.4E-05 47.1 2.1 24 61-84 23-46 (263)
451 3cf0_A Transitional endoplasmi 83.6 0.54 1.8E-05 47.4 2.9 23 63-85 50-72 (301)
452 2yl4_A ATP-binding cassette SU 83.6 0.39 1.3E-05 53.5 2.1 22 64-85 372-393 (595)
453 3u61_B DNA polymerase accessor 83.6 6.7 0.00023 39.2 11.2 21 65-85 51-71 (324)
454 3ozx_A RNAse L inhibitor; ATP 83.6 0.5 1.7E-05 52.2 2.9 22 64-85 27-48 (538)
455 3j16_B RLI1P; ribosome recycli 83.5 0.55 1.9E-05 52.7 3.2 22 64-85 105-126 (608)
456 3zvl_A Bifunctional polynucleo 83.4 0.53 1.8E-05 50.0 2.9 23 62-84 258-280 (416)
457 1xp8_A RECA protein, recombina 83.4 4.1 0.00014 42.6 9.7 21 64-84 76-96 (366)
458 3exa_A TRNA delta(2)-isopenten 83.3 0.72 2.5E-05 47.6 3.7 23 63-85 4-26 (322)
459 1d2n_A N-ethylmaleimide-sensit 83.2 0.77 2.6E-05 45.2 3.9 25 61-85 63-87 (272)
460 3crm_A TRNA delta(2)-isopenten 83.2 0.61 2.1E-05 48.2 3.2 22 63-84 6-27 (323)
461 3qf4_B Uncharacterized ABC tra 83.2 0.44 1.5E-05 53.2 2.3 22 63-84 382-403 (598)
462 3d3q_A TRNA delta(2)-isopenten 83.2 0.6 2E-05 48.6 3.1 22 63-84 8-29 (340)
463 1vma_A Cell division protein F 83.1 0.6 2E-05 47.8 3.0 23 62-84 104-126 (306)
464 4fcw_A Chaperone protein CLPB; 82.8 0.89 3.1E-05 45.3 4.2 24 62-85 47-70 (311)
465 2ocp_A DGK, deoxyguanosine kin 82.8 0.78 2.7E-05 44.4 3.6 22 63-84 3-24 (241)
466 1pzn_A RAD51, DNA repair and r 82.7 0.61 2.1E-05 48.4 3.0 23 63-85 132-154 (349)
467 1tue_A Replication protein E1; 82.7 0.52 1.8E-05 45.8 2.2 21 64-84 60-80 (212)
468 3foz_A TRNA delta(2)-isopenten 82.6 0.87 3E-05 46.9 4.0 22 63-84 11-32 (316)
469 3tqf_A HPR(Ser) kinase; transf 82.5 0.76 2.6E-05 43.5 3.2 24 62-85 16-39 (181)
470 4a82_A Cystic fibrosis transme 82.4 0.4 1.4E-05 53.3 1.5 21 64-84 369-389 (578)
471 3qf4_A ABC transporter, ATP-bi 82.3 0.46 1.6E-05 52.9 2.0 21 64-84 371-391 (587)
472 1yqt_A RNAse L inhibitor; ATP- 82.2 0.71 2.4E-05 50.9 3.4 22 64-85 314-335 (538)
473 3bk7_A ABC transporter ATP-bin 82.1 0.65 2.2E-05 52.1 3.1 24 63-86 118-141 (607)
474 3ozx_A RNAse L inhibitor; ATP 82.0 0.62 2.1E-05 51.4 2.9 22 64-85 296-317 (538)
475 2h92_A Cytidylate kinase; ross 82.0 0.69 2.4E-05 43.8 2.8 22 63-84 4-25 (219)
476 3qks_A DNA double-strand break 82.0 0.77 2.6E-05 43.7 3.2 20 64-83 25-44 (203)
477 2v1u_A Cell division control p 81.9 0.59 2E-05 47.7 2.5 22 63-84 45-66 (387)
478 1a7j_A Phosphoribulokinase; tr 81.6 0.47 1.6E-05 48.0 1.6 23 62-84 5-27 (290)
479 1sxj_D Activator 1 41 kDa subu 81.4 0.73 2.5E-05 46.7 3.0 21 65-85 61-81 (353)
480 1sxj_C Activator 1 40 kDa subu 81.4 0.73 2.5E-05 47.1 2.9 21 65-85 49-69 (340)
481 1tf7_A KAIC; homohexamer, hexa 81.1 0.73 2.5E-05 50.4 3.0 19 65-83 42-60 (525)
482 3lda_A DNA repair protein RAD5 81.1 0.75 2.6E-05 48.9 3.0 22 63-84 179-200 (400)
483 1ko7_A HPR kinase/phosphatase; 80.9 0.8 2.7E-05 47.2 3.0 24 62-85 144-167 (314)
484 2zts_A Putative uncharacterize 80.9 0.87 3E-05 43.5 3.2 22 63-84 31-52 (251)
485 3uk6_A RUVB-like 2; hexameric 80.9 0.76 2.6E-05 47.0 2.9 23 63-85 71-93 (368)
486 3bk7_A ABC transporter ATP-bin 80.8 0.84 2.9E-05 51.1 3.4 22 64-85 384-405 (607)
487 1xwi_A SKD1 protein; VPS4B, AA 80.7 0.79 2.7E-05 46.8 2.9 23 63-85 46-68 (322)
488 3pfi_A Holliday junction ATP-d 80.5 0.82 2.8E-05 46.3 3.0 22 64-85 57-78 (338)
489 2qby_B CDC6 homolog 3, cell di 80.5 0.81 2.8E-05 46.9 3.0 21 64-84 47-67 (384)
490 2r62_A Cell division protease 80.4 0.43 1.5E-05 46.8 0.8 22 64-85 46-67 (268)
491 3gmt_A Adenylate kinase; ssgci 80.3 1 3.4E-05 44.3 3.4 24 61-84 7-30 (230)
492 4edh_A DTMP kinase, thymidylat 80.2 1.1 3.8E-05 43.1 3.7 24 61-84 5-28 (213)
493 1qhl_A Protein (cell division 80.1 0.2 6.8E-06 49.2 -1.7 21 65-85 30-50 (227)
494 2qgz_A Helicase loader, putati 80.1 0.94 3.2E-05 46.1 3.2 23 62-84 152-174 (308)
495 3eie_A Vacuolar protein sortin 80.1 0.86 2.9E-05 46.3 2.9 23 62-84 51-73 (322)
496 3cr8_A Sulfate adenylyltranfer 80.0 0.67 2.3E-05 51.4 2.3 24 62-85 369-392 (552)
497 4dkx_A RAS-related protein RAB 80.0 0.34 1.2E-05 46.7 -0.1 42 336-378 134-175 (216)
498 3j16_B RLI1P; ribosome recycli 79.8 0.9 3.1E-05 50.9 3.2 23 64-86 380-402 (608)
499 1sky_E F1-ATPase, F1-ATP synth 79.5 1 3.4E-05 49.0 3.4 22 64-85 153-174 (473)
500 3v9p_A DTMP kinase, thymidylat 79.5 0.72 2.5E-05 45.1 2.1 24 61-84 24-47 (227)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=100.00 E-value=1e-42 Score=316.70 Aligned_cols=109 Identities=23% Similarity=0.389 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCC-CC
Q psy1524 367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDE-IV 444 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~-~~ 444 (592)
.+||||||++||||||.-|+| .++|||++ ++||||+|||||||||||||||||||||||+|||+|||||+| ||
T Consensus 14 e~LFkeGV~VaKKD~~kHpel-----~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e~IV 88 (162)
T 2xzm_7 14 KQLLQDGVFVLKKDFEGHHEE-----TGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVI 88 (162)
T ss_dssp HHHHHHTEEEEESCSSSBCTT-----TCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHCSSTTSCC
T ss_pred HHHhhcCcEEEeccccCCCcc-----cCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHHHhCCCccccc
Confidence 479999999999999955555 44555555 489999999999999999999999999999999999999999 99
Q ss_pred ccccccccccCCCCCCCccCCCCCCCCCC-CCCCccccCC
Q psy1524 445 PSTLKRQARTTDASKVPRQMTQRPDGGRG-ADDRMSYRKG 483 (592)
Q Consensus 445 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~yr~~ 483 (592)
|+||+++.++. .++++ ..+.++++|+ ++||++||++
T Consensus 89 PaTlk~~~~~~-~rp~~--~~~~~r~~r~~~~dR~~YRr~ 125 (162)
T 2xzm_7 89 PKTFKASNVNF-ISKEE--DEEERPRRQFNKGGRTGERDG 125 (162)
T ss_dssp CGGGSCCCCCC-CCCCC--C--------------------
T ss_pred cchhccccCCC-CCCCC--CCCCCCCCCCCCCChhhhhcc
Confidence 99999987663 33322 1111233344 4789999974
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=100.00 E-value=3.5e-39 Score=276.87 Aligned_cols=83 Identities=35% Similarity=0.591 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCCc
Q psy1524 367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVP 445 (592)
Q Consensus 367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~p 445 (592)
.+||+|||++||||+++++|-+ +. +||+++ ++||||+|||||||||||||||||||||||+|||+|||||+||||
T Consensus 13 e~LFkEGV~vakKD~~~~kH~e---l~-vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yLhLP~eivP 88 (105)
T 3u5c_K 13 QYLFQEGVVVAKKDFNQAKHEE---ID-TKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVP 88 (105)
T ss_dssp HHHHHHSEEECCSCSCCSSCSS---SS-SCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHTCCCSSCCS
T ss_pred HHHhhCCcEEEEcCCCCCCCCc---cC-ccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHhCCCchhcC
Confidence 4799999999999999996521 12 555555 489999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy1524 446 STLKRQAR 453 (592)
Q Consensus 446 ~~~~~~~~ 453 (592)
+||+++++
T Consensus 89 aTl~~~~~ 96 (105)
T 3u5c_K 89 GTYIQERN 96 (105)
T ss_dssp SCSCCSCC
T ss_pred ccccccCC
Confidence 99999744
No 3
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.4e-33 Score=274.40 Aligned_cols=166 Identities=30% Similarity=0.499 Sum_probs=143.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.+.+||+|||++|||||||++||+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq------------------ 72 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL------------------ 72 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCT------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCc------------------
Confidence 5679999999999999999999999999999999998 888889999999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|..++..|++++|++|+|||++++.||+++..|+..+...
T Consensus 73 -------------------------------------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~- 114 (216)
T 4dkx_A 73 -------------------------------------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE- 114 (216)
T ss_dssp -------------------------------------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred -------------------------------------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-
Confidence 899999999999999999999999999999999999999876
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..+++|+||||||+|+.+. |.|+.+++..+++ ..++.|+||||++|.|
T Consensus 115 ~~~~~piilVgNK~Dl~~~-------------------------------r~V~~~e~~~~a~-~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 115 RGSDVIIMLVGNKTDLADK-------------------------------RQVSIEEGERKAK-ELNVMFIETSAKAGYN 162 (216)
T ss_dssp HTTSSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEEBTTTTBS
T ss_pred cCCCCeEEEEeeccchHhc-------------------------------CcccHHHHhhHHH-HhCCeeEEEeCCCCcC
Confidence 4578999999999999876 8899999999998 5567899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.|++.+...
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988543
No 4
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=2.3e-28 Score=230.60 Aligned_cols=169 Identities=30% Similarity=0.499 Sum_probs=151.5
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....+.+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------- 76 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ---------------- 76 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSC----------------
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCc----------------
Confidence 3456789999999999999999999999999989999999777888889999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus 77 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 117 (183)
T 3kkq_A 77 ---------------------------------------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117 (183)
T ss_dssp ---------------------------------------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999999999887
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-C
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-D 295 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-t 295 (592)
.....++|+|+|+||+|+.+. +.++.+++..+++. .+++|++|||+ +
T Consensus 118 ~~~~~~~p~ilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 118 VKDRESFPMILVANKVDLMHL-------------------------------RKVTRDQGKEMATK-YNIPYIETSAKDP 165 (183)
T ss_dssp HHTSSCCCEEEEEECTTCSTT-------------------------------CCSCHHHHHHHHHH-HTCCEEEEBCSSS
T ss_pred hcCCCCCcEEEEEECCCchhc-------------------------------cCcCHHHHHHHHHH-hCCeEEEeccCCC
Confidence 666678999999999999765 67888888888874 45889999999 9
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|.||+++|+.+++.+.+
T Consensus 166 ~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998853
No 5
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=4.3e-28 Score=224.00 Aligned_cols=164 Identities=34% Similarity=0.580 Sum_probs=147.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~-------------------- 61 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT-------------------- 61 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS--------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh--------------------
Confidence 468999999999999999999999999888899998777777888988999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..+...++..+|++++|||++++.+|+.+..|+..+......
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 106 (167)
T 1c1y_A 62 -----------------------------------EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106 (167)
T ss_dssp -----------------------------------CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred -----------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 677788888999999999999999999999999999988876556
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+.+. +.++.+++..+++.....++++|||++|.||+
T Consensus 107 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDE-------------------------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp SCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred CCCcEEEEEECcccccc-------------------------------ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 78999999999999865 56778888888875557889999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+.+++.+
T Consensus 156 ~l~~~l~~~i 165 (167)
T 1c1y_A 156 EIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 6
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=5.6e-28 Score=230.85 Aligned_cols=168 Identities=20% Similarity=0.308 Sum_probs=144.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
......+||+|+|++|||||||+++|+++.|...+.+|. +.+...+.+++..+.++||||+|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~---------------- 77 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGP---------------- 77 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSS----------------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCC----------------
Confidence 445678999999999999999999999999988888874 445588889999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.|. +++.+|++|+|||++++.||+.+..|+..+..
T Consensus 78 ---------------------------------------~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 113 (184)
T 3ihw_A 78 ---------------------------------------PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCS 113 (184)
T ss_dssp ---------------------------------------CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 5554 68889999999999999999999999999987
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.....++|+|||+||+|+.... .+.++.+++..+++......|++|||++|
T Consensus 114 ~~~~~~~piilv~nK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 114 FRNASEVPMVLVGTQDAISAAN-----------------------------PRVIDDSRARKLSTDLKRCTYYETCATYG 164 (184)
T ss_dssp TSCGGGSCEEEEEECTTCBTTB-----------------------------CCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred hcCCCCCCEEEEEECccccccc-----------------------------ccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence 6434679999999999996431 16788899999988655689999999999
Q ss_pred ccHHHHHHHHHHHHHHhc
Q psy1524 297 TNITQVFKELLVQAKVKY 314 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~ 314 (592)
.||+++|+.+++.+...+
T Consensus 165 ~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVALR 182 (184)
T ss_dssp BTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999986653
No 7
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=7.7e-28 Score=225.16 Aligned_cols=169 Identities=36% Similarity=0.577 Sum_probs=149.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------ 67 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ------------------ 67 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45679999999999999999999999999999999999777788889999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+....
T Consensus 68 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (181)
T 2fn4_A 68 -------------------------------------EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 110 (181)
T ss_dssp -------------------------------------TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 6677778888999999999999999999999999999886665
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+... +.++.+++..++. ..+..+++|||++|.|
T Consensus 111 ~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQ-------------------------------RQVPRSEASAFGA-SHHVAYFEASAKLRLN 158 (181)
T ss_dssp TSSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBS
T ss_pred CCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEecCCCCCC
Confidence 5678999999999999865 5677788888876 4567899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1524 299 ITQVFKELLVQAKVKY 314 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~ 314 (592)
|+++|+.+++.+....
T Consensus 159 v~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999986543
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=2e-28 Score=230.59 Aligned_cols=168 Identities=29% Similarity=0.576 Sum_probs=146.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 64 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ------------------- 64 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 4579999999999999999999999999999999999777888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++|..+...+++.+|++|+|||++++.+|+.+..|+..+.....
T Consensus 65 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 108 (181)
T 3t5g_A 65 ------------------------------------DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108 (181)
T ss_dssp ------------------------------------CTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred ------------------------------------hhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 55555666678999999999999999999999999999887655
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+.+. +.++.+++..+++ ..+++|++|||++|.||
T Consensus 109 ~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 109 KVQIPIMLVGNKKDLHME-------------------------------RVISYEEGKALAE-SWNAAFLESSAKENQTA 156 (181)
T ss_dssp ---CCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTSHHHH
T ss_pred CCCCCEEEEEECccchhc-------------------------------ceecHHHHHHHHH-HhCCcEEEEecCCCCCH
Confidence 668999999999999765 6788889998887 55778999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy1524 300 TQVFKELLVQAKVKY 314 (592)
Q Consensus 300 eeLf~~Li~~i~~~~ 314 (592)
+++|+.+++.+....
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999986544
No 9
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=234.17 Aligned_cols=170 Identities=21% Similarity=0.326 Sum_probs=140.0
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
...+..+||+|+|++|||||||+++|++..+...+.+++ .+.+...+.+++..+.+.||||+|+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~--------------- 82 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ--------------- 82 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCC---------------
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCC---------------
Confidence 344677999999999999999999998654432333443 4777888889999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+.+.. ++..+++.+|++|+|||++++.||+.+..|+..+
T Consensus 83 ----------------------------------------~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 122 (195)
T 3cbq_A 83 ----------------------------------------GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 122 (195)
T ss_dssp ----------------------------------------SGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred ----------------------------------------ccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 55543 7778899999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
.......++|+|+|+||+|+... +.++.+++..+++ ..++.|++|||+
T Consensus 123 ~~~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 123 RAGRPHHDLPVILVGNKSDLARS-------------------------------REVSLEEGRHLAG-TLSCKHIETSAA 170 (195)
T ss_dssp HHHSTTSCCCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEEEBTT
T ss_pred HHhcCCCCCCEEEEeechhcccc-------------------------------CCcCHHHHHHHHH-HhCCEEEEEcCC
Confidence 77643458999999999999765 6678888888887 446789999999
Q ss_pred CCccHHHHHHHHHHHHHHh
Q psy1524 295 DNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~ 313 (592)
+|.||+++|+.+++.+...
T Consensus 171 ~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TTBSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988543
No 10
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=7.6e-28 Score=226.06 Aligned_cols=164 Identities=22% Similarity=0.369 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+.+ +.+|+++.+.+.+.+++..+.++||||+|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 64 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGA------------------- 64 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSS-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 467999999999999999999999999886 788888888888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++ ..+++++|++|+|||++++.||+.+..|+..+.....
T Consensus 65 ------------------------------------~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~ 103 (178)
T 2iwr_A 65 ------------------------------------PD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG 103 (178)
T ss_dssp ------------------------------------CC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------ch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHh
Confidence 33 3468889999999999999999999998877766532
Q ss_pred --CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 220 --STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 220 --~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..++|+|+|+||+|+.... .+.++.+++..+++.....++++|||++|.
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 104 EGRGGLALALVGTQDRISASS-----------------------------PRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp SSSCCCEEEEEEECTTCBTTB-----------------------------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred cCCCCCCEEEEEECccccccc-----------------------------cCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 3578999999999995321 167788888888875557889999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy1524 298 NITQVFKELLVQAKVK 313 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~ 313 (592)
||+++|+.+++.+...
T Consensus 155 ~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTL 170 (178)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998654
No 11
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=1.2e-27 Score=220.33 Aligned_cols=164 Identities=32% Similarity=0.626 Sum_probs=144.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~-------------------- 62 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ-------------------- 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 468999999999999999999999999888889998777777888999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..+...++..+|++++|||++++.+|+.+..|+..+......
T Consensus 63 -----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (168)
T 1u8z_A 63 -----------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107 (168)
T ss_dssp -------------------------------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred -----------------------------------chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 778888899999999999999999999999999999999887555
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+.+. +.++.+++..+++ ..+.++++|||++|.||+
T Consensus 108 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAD-QWNVNYVETSAKTRANVD 155 (168)
T ss_dssp TTSCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTTCTTHH
T ss_pred CCCcEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCeEEEeCCCCCCCHH
Confidence 68999999999999765 5677788888876 456789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+++++.+.
T Consensus 156 ~l~~~l~~~i~ 166 (168)
T 1u8z_A 156 KVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=231.88 Aligned_cols=171 Identities=27% Similarity=0.446 Sum_probs=142.0
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.+..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------- 88 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ-------------- 88 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC--------------
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--------------
Confidence 34456789999999999999999999999999888888887 677788888998899999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
++|..++..+++.+|++|+|||++++.+|+.+..|+..+
T Consensus 89 -----------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i 127 (201)
T 2hup_A 89 -----------------------------------------ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV 127 (201)
T ss_dssp -----------------------------------------GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHH
T ss_pred -----------------------------------------HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC-eEEEccc
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN-GFVEASA 293 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~-~~~EvSA 293 (592)
... ...++|+|||+||+|+.+. +.++.+++..+++. .++ .+++|||
T Consensus 128 ~~~-~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~~~~SA 174 (201)
T 2hup_A 128 RKY-AGSNIVQLLIGNKSDLSEL-------------------------------REVSLAEAQSLAEH-YDILCAIETSA 174 (201)
T ss_dssp HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHHH-TTCSEEEECBT
T ss_pred HHh-cCCCCCEEEEEECCccccc-------------------------------cccCHHHHHHHHHH-cCCCEEEEEeC
Confidence 776 3468999999999999865 56788888888874 455 8999999
Q ss_pred CCCccHHHHHHHHHHHHHHhc
Q psy1524 294 KDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~~ 314 (592)
++|.||+++|+.|++.+....
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999986543
No 13
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.7e-27 Score=224.01 Aligned_cols=168 Identities=32% Similarity=0.610 Sum_probs=149.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 76 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------ 76 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999888999998877778888999899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..++..++..+|++|+|||++++.+|+.+..|+..+....
T Consensus 77 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 119 (187)
T 2a9k_A 77 -------------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 119 (187)
T ss_dssp -------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 7788888999999999999999999999999999999998876
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+.+. +.+..+++..+++ ..++++++|||++|.|
T Consensus 120 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 120 EDENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAE-QWNVNYVETSAKTRAN 167 (187)
T ss_dssp CCTTCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred CCCCCCEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCeEEEeCCCCCCC
Confidence 5568999999999999765 5677788888876 4567899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.|++.+...
T Consensus 168 i~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 168 VDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998644
No 14
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=1.1e-27 Score=220.45 Aligned_cols=164 Identities=37% Similarity=0.641 Sum_probs=146.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------------------- 61 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT-------------------- 61 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCT--------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 468999999999999999999999999888889988877888889999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..+...++..+|++++|||++++.+++.+..|+..+......
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 106 (167)
T 1kao_A 62 -----------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY 106 (167)
T ss_dssp -----------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------------------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 778888889999999999999999999999999999988876555
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.+.|+++|+||+|+... +.++.+++..+++ ..+.++++|||++|.||+
T Consensus 107 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 107 EKVPVILVGNKVDLESE-------------------------------REVSSSEGRALAE-EWGCPFMETSAKSKTMVD 154 (167)
T ss_dssp SCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSCEEEECTTCHHHHH
T ss_pred CCCCEEEEEECCccccc-------------------------------ccCCHHHHHHHHH-HhCCCEEEecCCCCcCHH
Confidence 68999999999999765 5677778888776 346789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+++.+.
T Consensus 155 ~l~~~l~~~~~ 165 (167)
T 1kao_A 155 ELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 15
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.1e-28 Score=236.79 Aligned_cols=170 Identities=24% Similarity=0.399 Sum_probs=138.2
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
......+||+|+|++|||||||+++|++. .|...+.++..+++.+.+.+++..+.+.+|||+|.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~-------------- 97 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN-------------- 97 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT--------------
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC--------------
Confidence 34466799999999999999999999964 34555555444778888889999999999999998
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~ 213 (592)
+. +..+...+++.+|++|+|||++++.||+.+..|+..
T Consensus 98 -----------------------------------------~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~ 136 (211)
T 2g3y_A 98 -----------------------------------------KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ 136 (211)
T ss_dssp -----------------------------------------THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 33 445666778899999999999999999999999988
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
+.+.....++|+||||||+||... +.++.+++..++. ..+++|++|||
T Consensus 137 l~~~~~~~~~piilVgNK~DL~~~-------------------------------r~v~~~e~~~~a~-~~~~~~~e~SA 184 (211)
T 2g3y_A 137 LRRARQTEDIPIILVGNKSDLVRC-------------------------------REVSVSEGRACAV-VFDCKFIETSA 184 (211)
T ss_dssp HHTSGGGTTSCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBT
T ss_pred HHHHhCCCCCcEEEEEEChHHhcC-------------------------------ceEeHHHHHHHHH-HcCCEEEEEeC
Confidence 876533457999999999999765 6677788777766 45678999999
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q psy1524 294 KDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~ 313 (592)
++|.||+++|+.+++.+...
T Consensus 185 k~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988543
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=230.51 Aligned_cols=165 Identities=22% Similarity=0.363 Sum_probs=141.1
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 79 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL------------------ 79 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999999999999777777888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
++|..+ ..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 80 -------------------------------------~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 121 (187)
T 3c5c_A 80 -------------------------------------DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121 (187)
T ss_dssp ---------------------------------------CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------CcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 445444 457899999999999999999999999999887753
Q ss_pred c--CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc-CC
Q psy1524 219 A--STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA-KD 295 (592)
Q Consensus 219 ~--~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA-kt 295 (592)
. ..++|+|||+||+|+... +.++.+++..+++ ..++.|++||| ++
T Consensus 122 ~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 122 KETQRSIPALLLGNKLDMAQY-------------------------------RQVTKAEGVALAG-RFGCLFFEVSACLD 169 (187)
T ss_dssp HHHCCCCCEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEECCSSSC
T ss_pred hccCCCCCEEEEEECcchhhc-------------------------------CccCHHHHHHHHH-HcCCcEEEEeecCc
Confidence 1 258999999999999765 6678888888887 44678999999 89
Q ss_pred CccHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAK 311 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~ 311 (592)
|.||+++|+.+++.+.
T Consensus 170 g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 170 FEHVQHVFHEAVREAR 185 (187)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999999874
No 17
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=222.12 Aligned_cols=167 Identities=25% Similarity=0.399 Sum_probs=131.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
++.+||+|+|++|||||||+++|++..+...+..+..+.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------- 62 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA------------------- 62 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCC-------------------
Confidence 3568999999999999999999999887655443333667778888999999999999998
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcc--hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE--FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+. +..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~ 106 (175)
T 2nzj_A 63 ------------------------------------EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT 106 (175)
T ss_dssp -----------------------------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------CccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 22 4566677889999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
....++|+|+|+||+|+.+. +.++.+++..++. ..+.++++|||++|.
T Consensus 107 ~~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 107 HQADHVPIILVGNKADLARC-------------------------------REVSVEEGRACAV-VFDCKFIETSATLQH 154 (175)
T ss_dssp C----CCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HHTSEEEECBTTTTB
T ss_pred hccCCCCEEEEEEChhhccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEecCCCC
Confidence 44468999999999999765 5677777777776 446789999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy1524 298 NITQVFKELLVQAKVK 313 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~ 313 (592)
||+++|+.+++.+...
T Consensus 155 gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLR 170 (175)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988544
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2.2e-27 Score=221.63 Aligned_cols=166 Identities=25% Similarity=0.401 Sum_probs=146.7
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 74 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ---------------- 74 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG----------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC----------------
Confidence 346789999999999999999999999999888888887 666777888999999999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+...+++.+|++|+|||++++.+++.+..|+..+..
T Consensus 75 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (179)
T 1z0f_A 75 ---------------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115 (179)
T ss_dssp ---------------------------------------GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence 77888888999999999999999999999999999998877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...++|+++|+||+|+.+. +.++.+++..+++ ..++++++|||++|
T Consensus 116 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 162 (179)
T 1z0f_A 116 L-TNPNTVIILIGNKADLEAQ-------------------------------RDVTYEEAKQFAE-ENGLLFLEASAKTG 162 (179)
T ss_dssp H-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence 6 3468999999999999765 5677788888877 45678999999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.+++.+.
T Consensus 163 ~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998873
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=228.94 Aligned_cols=170 Identities=29% Similarity=0.451 Sum_probs=142.1
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
+...+..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------- 85 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ-------------- 85 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS--------------
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc--------------
Confidence 34457789999999999999999999999988877777776 677778888998999999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus 86 -----------------------------------------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i 124 (192)
T 2il1_A 86 -----------------------------------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 124 (192)
T ss_dssp -----------------------------------------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999998888
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ...++|++||+||+|+... +.++.+++..+++......+++|||+
T Consensus 125 ~~~-~~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 125 DKY-ASEDAELLLVGNKLDCETD-------------------------------REITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHH-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHh-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 765 4568999999999999765 56778888888875457889999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAKV 312 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~ 312 (592)
+|.||+++|+.|++.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998854
No 20
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=232.83 Aligned_cols=171 Identities=31% Similarity=0.442 Sum_probs=149.5
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
+...++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------- 85 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ-------------- 85 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--------------
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------
Confidence 34457789999999999999999999999999888888887 677778889999999999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
++|..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus 86 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i 124 (201)
T 2ew1_A 86 -----------------------------------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124 (201)
T ss_dssp -----------------------------------------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 788888888999999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ...++|+|+|+||+|+.+. +.++.+++..+++ ..++.+++|||+
T Consensus 125 ~~~-~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 125 EQY-ASNKVITVLVGNKIDLAER-------------------------------REVSQQRAEEFSE-AQDMYYLETSAK 171 (201)
T ss_dssp HHH-SCTTCEEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCCEEECCTT
T ss_pred HHh-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence 775 3567899999999999765 5677788888776 446789999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
+|.||+++|+.+++.+..+.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999986543
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=225.43 Aligned_cols=170 Identities=30% Similarity=0.482 Sum_probs=149.3
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+.+.||||+|+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 75 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------------- 75 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 35789999999999999999999999999888878776 677788889999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 76 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 117 (196)
T 3tkl_A 76 --------------------------------------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117 (196)
T ss_dssp --------------------------------------GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 778888889999999999999999999999999999988776
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|+|+||+|+... +.+..+++..++. ..++++++|||++|.
T Consensus 118 -~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 118 -ASENVNKLLVGNKCDLTTK-------------------------------KVVDYTTAKEFAD-SLGIPFLETSAKNAT 164 (196)
T ss_dssp -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCCEEEECTTTCT
T ss_pred -cCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEeCCCCC
Confidence 4568999999999999866 5677788888877 556789999999999
Q ss_pred cHHHHHHHHHHHHHHhccc
Q psy1524 298 NITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~~ 316 (592)
||+++|+.+++.+......
T Consensus 165 gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp THHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 9999999999999765443
No 22
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=225.95 Aligned_cols=168 Identities=32% Similarity=0.610 Sum_probs=150.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 72 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------ 72 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCCh------------------
Confidence 35679999999999999999999999999988999999877788889999899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+....
T Consensus 73 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (206)
T 2bov_A 73 -------------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 115 (206)
T ss_dssp -------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 7788888999999999999999999999999999999998875
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+|+|+||+|+... +.++.+++..+++ ..+.++++|||++|.|
T Consensus 116 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 116 EDENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAE-QWNVNYVETSAKTRAN 163 (206)
T ss_dssp TCSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEECTTTCTT
T ss_pred CCCCCCEEEEEeccCcccc-------------------------------ccccHHHHHHHHH-HhCCeEEEEeCCCCCC
Confidence 5568999999999999865 5677788888876 4557899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.+++.+...
T Consensus 164 i~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 164 VDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998654
No 23
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=2.1e-27 Score=220.44 Aligned_cols=165 Identities=21% Similarity=0.319 Sum_probs=131.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+||+|+|++|||||||+++|++..+...+.++. .+.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------------------- 61 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ-------------------- 61 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCc--------------------
Confidence 5899999999999999999999877664444433 4777888889999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++.. +...++..+|++|+|||++++.+|+.+..|+..+.....
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (169)
T 3q85_A 62 -----------------------------------GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 106 (169)
T ss_dssp -------------------------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST
T ss_pred -----------------------------------cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc
Confidence 44443 556678899999999999999999999999999988654
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+.+. +.++.+++..+++ ..++++++|||++|.||
T Consensus 107 ~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 107 HHDLPVILVGNKSDLARS-------------------------------REVSLEEGRHLAG-TLSCKHIETSAALHHNT 154 (169)
T ss_dssp TSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBSH
T ss_pred CCCCCEEEEeeCcchhhc-------------------------------ccCCHHHHHHHHH-HcCCcEEEecCccCCCH
Confidence 458999999999999865 6788888888887 55678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1524 300 TQVFKELLVQAKVK 313 (592)
Q Consensus 300 eeLf~~Li~~i~~~ 313 (592)
+++|+.+++.+...
T Consensus 155 ~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 155 RELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988543
No 24
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.7e-27 Score=220.55 Aligned_cols=164 Identities=24% Similarity=0.389 Sum_probs=122.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+||+|+|++|||||||+++|++..+. ...++.+..+...+.+++..+.+.+|||+|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------------------- 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ--------------------- 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCC---------------------
Confidence 589999999999999999999976654 3345555556677788999999999999999
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~ 221 (592)
+.+..+...++..+|++++|||++++.+|+.+..|+..+.......
T Consensus 60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 105 (166)
T 3q72_A 60 ----------------------------------DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD 105 (166)
T ss_dssp -----------------------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---
T ss_pred ----------------------------------ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 6777788888999999999999999999999999999988765557
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee 301 (592)
++|+++|+||+|+.+. +.++.+++..++. ..+.++++|||++|.||++
T Consensus 106 ~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 106 DVPIILVGNKSDLVRS-------------------------------REVSVDEGRACAV-VFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp CCCEEEEEECTTCCSS-------------------------------CCSCHHHHHHHHH-HTTCEEEECBGGGTBSHHH
T ss_pred CCCEEEEEeccccccc-------------------------------cccCHHHHHHHHH-HhCCcEEEeccCCCCCHHH
Confidence 8999999999999866 6678888888877 4567899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1524 302 VFKELLVQAKVK 313 (592)
Q Consensus 302 Lf~~Li~~i~~~ 313 (592)
+|+.+++.+...
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988543
No 25
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=5.7e-28 Score=232.91 Aligned_cols=171 Identities=28% Similarity=0.483 Sum_probs=141.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.||||+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 82 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ----------------- 82 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCC-----------------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 345689999999999999999999999999988899998777777888888899999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 83 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 124 (201)
T 3oes_A 83 --------------------------------------DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124 (201)
T ss_dssp --------------------------------------CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 555666667889999999999999999999999999998876
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
....++|+|+|+||+|+... +.++.+++..+++ ..++++++|||++|.
T Consensus 125 ~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 125 HGKTRVPVVLVGNKADLSPE-------------------------------REVQAVEGKKLAE-SWGATFMESSARENQ 172 (201)
T ss_dssp ----CCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTCHH
T ss_pred cCCCCCCEEEEEECccCccc-------------------------------cccCHHHHHHHHH-HhCCeEEEEeCCCCC
Confidence 55668999999999999866 6778888888877 456789999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q psy1524 298 NITQVFKELLVQAKVKYN 315 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~ 315 (592)
||+++|+.+++.+.....
T Consensus 173 ~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999866543
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=3e-27 Score=223.03 Aligned_cols=168 Identities=33% Similarity=0.561 Sum_probs=147.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCc-------------------
Confidence 3568999999999999999999999999989999998888888899999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..+...++..+|++++|||++++.+|+.+..|+..+.....
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (189)
T 4dsu_A 63 ------------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106 (189)
T ss_dssp ---------------------------------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 77788888999999999999999999999999999999988766
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+.. +.+..+++..+++ ..+.++++|||++|.||
T Consensus 107 ~~~~p~i~v~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPS--------------------------------RTVDTKQAQDLAR-SYGIPFIETSAKTRQGV 153 (189)
T ss_dssp CSCCCEEEEEECTTSSS--------------------------------CSSCHHHHHHHHH-HHTCCEEECCTTTCTTH
T ss_pred CCCCcEEEEEECccCcc--------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Confidence 67899999999999974 3556777787776 44678999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1524 300 TQVFKELLVQAKVKYN 315 (592)
Q Consensus 300 eeLf~~Li~~i~~~~~ 315 (592)
+++|+.+++.+.....
T Consensus 154 ~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999976543
No 27
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=3.3e-27 Score=222.95 Aligned_cols=170 Identities=26% Similarity=0.377 Sum_probs=149.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||||+++|+++.+...+.+|+. +.....+.+++..+.+.||||+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 69 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ---------------- 69 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS----------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------------
Confidence 346789999999999999999999999999888888877 667778888998899999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.+..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus 70 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 110 (186)
T 2bme_A 70 ---------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110 (186)
T ss_dssp ---------------------------------------GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999988877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...++|+++|+||+|+... +.++.+++..+++ ..++++++|||++|
T Consensus 111 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 157 (186)
T 2bme_A 111 L-ASQNIVIILCGNKKDLDAD-------------------------------REVTFLEASRFAQ-ENELMFLETSALTG 157 (186)
T ss_dssp H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEecCCCC
Confidence 5 3468999999999999765 5677778888876 45678999999999
Q ss_pred ccHHHHHHHHHHHHHHhcc
Q psy1524 297 TNITQVFKELLVQAKVKYN 315 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~~ 315 (592)
.||+++|+.+++.+.....
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 158 ENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999876543
No 28
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=9.7e-28 Score=234.81 Aligned_cols=183 Identities=19% Similarity=0.335 Sum_probs=146.1
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
.......+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.||||+|+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------- 85 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS--------------- 85 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCS---------------
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCC---------------
Confidence 34456789999999999999999999999999999999999877788888999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH-HHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE-IRLIRDHI 214 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~-l~~~l~~L 214 (592)
++|..++..+++++|++|+|||++++.||+. +..|+..+
T Consensus 86 ----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i 125 (214)
T 3q3j_B 86 ----------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125 (214)
T ss_dssp ----------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHH
T ss_pred ----------------------------------------HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 7777888888999999999999999999999 68899988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ..++|+|||+||+|+.++.... ........+.++.+++..+++......|++|||+
T Consensus 126 ~~~--~~~~piilv~nK~Dl~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 126 LDY--CPSTRVLLIGCKTDLRTDLSTL-------------------MELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp HHH--CTTSEEEEEEECGGGGGCHHHH-------------------HHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred HHh--CCCCCEEEEEEChhhccchhhh-------------------hhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 875 4689999999999997531000 0000011267888999999885443389999999
Q ss_pred CCcc-HHHHHHHHHHHHHHhc
Q psy1524 295 DNTN-ITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~g-VeeLf~~Li~~i~~~~ 314 (592)
+|.| |+++|+.+++.+....
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHhccC
Confidence 9998 9999999999986543
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=5.2e-28 Score=228.22 Aligned_cols=167 Identities=32% Similarity=0.505 Sum_probs=118.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 67 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------------- 67 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC-----------------
Confidence 35789999999999999999999999988877888877 566777888999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
++|..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus 68 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 109 (183)
T 2fu5_C 68 --------------------------------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 109 (183)
T ss_dssp --------------------------------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 556666667789999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|++||+||+|+.+. +.++.+++..+++ ..++++++|||++|.
T Consensus 110 -~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 110 -ASADVEKMILGNKCDVNDK-------------------------------RQVSKERGEKLAL-DYGIKFMETSAKANI 156 (183)
T ss_dssp -SCTTCEEEEEEEC--CCSC-------------------------------CCSCHHHHHHHHH-HHTCEEEECCC---C
T ss_pred -cCCCCCEEEEEECccCCcc-------------------------------CcCCHHHHHHHHH-HcCCeEEEEeCCCCC
Confidence 3467999999999999765 5677888888876 446789999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy1524 298 NITQVFKELLVQAKVK 313 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~ 313 (592)
||+++|+.+++.+..+
T Consensus 157 ~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 157 NVENAFFTLARDIKAK 172 (183)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998654
No 30
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=2.5e-27 Score=226.31 Aligned_cols=171 Identities=26% Similarity=0.386 Sum_probs=144.2
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.....+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.++||||+|+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------- 80 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ-------------- 80 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--------------
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--------------
Confidence 33456789999999999999999999999998877777776 666778888999999999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
++|..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus 81 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i 119 (191)
T 2a5j_A 81 -----------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 119 (191)
T ss_dssp -----------------------------------------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred -----------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 666777778899999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ...++|+++|+||+|+... +.++.+++..+++ ..++.+++|||+
T Consensus 120 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 120 RQH-SSSNMVIMLIGNKSDLESR-------------------------------RDVKREEGEAFAR-EHGLIFMETSAK 166 (191)
T ss_dssp HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEECTT
T ss_pred HHh-cCCCCCEEEEEECcccCCc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence 775 3568999999999999765 5677788888876 456789999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
+|.||+++|+.|++.+..+.
T Consensus 167 ~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999986543
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=224.98 Aligned_cols=171 Identities=27% Similarity=0.430 Sum_probs=147.6
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW 133 (592)
Q Consensus 55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~ 133 (592)
..+..++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------- 84 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL------------- 84 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-------------
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-------------
Confidence 345567789999999999999999999999999888888876 566677888888999999999999
Q ss_pred CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524 134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213 (592)
Q Consensus 134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~ 213 (592)
+++..++..++..+|++|+|||++++.+|..+..|+..
T Consensus 85 ------------------------------------------~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~ 122 (193)
T 2oil_A 85 ------------------------------------------ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE 122 (193)
T ss_dssp ------------------------------------------CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHH
T ss_pred ------------------------------------------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 66777888899999999999999999999999999988
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
+... ...++|+++|+||+|+... +.+..+++..++. ..++.+++|||
T Consensus 123 i~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa 169 (193)
T 2oil_A 123 LYDH-AEATIVVMLVGNKSDLSQA-------------------------------REVPTEEARMFAE-NNGLLFLETSA 169 (193)
T ss_dssp HHTT-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEECT
T ss_pred HHHh-cCCCCeEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeC
Confidence 8765 3467899999999999765 5667778888876 45678999999
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q psy1524 294 KDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~ 313 (592)
++|.||+++|+.|++.+..+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 32
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-27 Score=224.97 Aligned_cols=166 Identities=31% Similarity=0.508 Sum_probs=146.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 86 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ------------------- 86 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4569999999999999999999999999888899998777777888999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+. ..+...++..+|++|+|||++++.+|+.+..|+..+.....
T Consensus 87 ------------------------------------~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~ 129 (196)
T 2atv_A 87 ------------------------------------ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK 129 (196)
T ss_dssp ------------------------------------CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred ------------------------------------Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC
Confidence 33 55677789999999999999999999999999999888655
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-c
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-N 298 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-g 298 (592)
..++|+|+|+||+|+.+. +.++.+++..+++ ..++++++|||++|. |
T Consensus 130 ~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 130 PKNVTLILVGNKADLDHS-------------------------------RQVSTEEGEKLAT-ELACAFYECSACTGEGN 177 (196)
T ss_dssp TSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSEEEECCTTTCTTC
T ss_pred CCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEECCCcCCcC
Confidence 578999999999999765 5677888888877 446789999999999 9
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.+++.+.++
T Consensus 178 i~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 178 ITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998654
No 33
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=2.7e-27 Score=226.32 Aligned_cols=170 Identities=24% Similarity=0.353 Sum_probs=146.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 81 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ----------------- 81 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCc-----------------
Confidence 446789999999999999999999999999989999999888788889999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~ 216 (592)
++|..++..+++++|++|+|||++++.+|+.+ ..|+..+..
T Consensus 82 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 123 (194)
T 3reg_A 82 --------------------------------------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123 (194)
T ss_dssp --------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred --------------------------------------HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999997 667777765
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++|+|+|+||+|+.+.. .+.+..+++..+++......+++|||++|
T Consensus 124 ~--~~~~p~ilv~nK~Dl~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 124 Y--IDTAKTVLVGLKVDLRKDG-----------------------------SDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp H--CTTSEEEEEEECGGGCCTT-----------------------------TTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred h--CCCCCEEEEEEChhhccCC-----------------------------CCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 4 4679999999999997541 16678888888887544334999999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||+++|+.+++.+...
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998644
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=1.8e-27 Score=220.80 Aligned_cols=164 Identities=28% Similarity=0.440 Sum_probs=138.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ------------------ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 5679999999999999999999999999888888887 566677888999999999999998
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 66 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (170)
T 1z08_A 66 -------------------------------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML 108 (170)
T ss_dssp --------------------------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 5566666677899999999999999999999999998887653
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+++|+||+|+.+. +.++.+++..+++ ..+.++++|||++|.|
T Consensus 109 -~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 109 -GNEICLCIVGNKIDLEKE-------------------------------RHVSIQEAESYAE-SVGAKHYHTSAKQNKG 155 (170)
T ss_dssp -GGGSEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEEBTTTTBS
T ss_pred -CCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEecCCCCCC
Confidence 357899999999999765 5677788888877 4567899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+++.+.
T Consensus 156 i~~l~~~l~~~~~ 168 (170)
T 1z08_A 156 IEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=4.2e-27 Score=217.53 Aligned_cols=163 Identities=28% Similarity=0.452 Sum_probs=143.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------ 65 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ------------------ 65 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4679999999999999999999999998887778877 555677788888999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+...
T Consensus 66 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~- 107 (170)
T 1r2q_A 66 -------------------------------------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ- 107 (170)
T ss_dssp -------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-
T ss_pred -------------------------------------HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 778888888999999999999999999999999999988776
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+... +.++.+++..++. ....++++|||++|.|
T Consensus 108 ~~~~~~iilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 108 ASPNIVIALSGNKADLANK-------------------------------RAVDFQEAQSYAD-DNSLLFMETSAKTSMN 155 (170)
T ss_dssp SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred cCCCCcEEEEEECccCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence 3568999999999999765 5667778888876 4567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.|++.+
T Consensus 156 i~~l~~~i~~~~ 167 (170)
T 1r2q_A 156 VNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=5.9e-27 Score=221.38 Aligned_cols=170 Identities=24% Similarity=0.372 Sum_probs=146.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeE-EEEEeeCCe---------EEEEEEEeCCCCCCCCcc
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMH-HEDFSMNGV---------HLKLDILDTSGEQSGKGL 126 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~-~~~v~vdg~---------~v~L~I~DT~G~~~~~~~ 126 (592)
..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++. ...+.+++. .+.+.||||+|+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------ 80 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL------ 80 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS------
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc------
Confidence 456789999999999999999999999999888888887 444 456666665 788999999999
Q ss_pred cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524 127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE 206 (592)
Q Consensus 127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~ 206 (592)
+++..+...++..+|++|+|||++++.+++.
T Consensus 81 -------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 111 (195)
T 3bc1_A 81 -------------------------------------------------ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN 111 (195)
T ss_dssp -------------------------------------------------GGGHHHHHHTTTTCSEEEEEEETTCHHHHHT
T ss_pred -------------------------------------------------HHHHHHHHHHHcCCCEEEEEEECCCHHHHHH
Confidence 7888888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN 286 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~ 286 (592)
+..|+..+.......++|+++|+||+|+.+. +.+..+++..++. ..++
T Consensus 112 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~ 159 (195)
T 3bc1_A 112 VRNWISQLQMHAYSENPDIVLCGNKSDLEDQ-------------------------------RAVKEEEARELAE-KYGI 159 (195)
T ss_dssp HHHHHHHHHHHSSSSSCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCC
Confidence 9999998887644468999999999999765 5667778888876 3456
Q ss_pred eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 287 GFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 287 ~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
++++|||++|.||+++|+.|++.+..+.
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999986543
No 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=5.8e-27 Score=223.10 Aligned_cols=170 Identities=29% Similarity=0.496 Sum_probs=145.4
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
....++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------- 81 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ-------------- 81 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC--------------
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc--------------
Confidence 33456789999999999999999999999999888788877 555677778888899999999998
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+
T Consensus 82 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 120 (189)
T 2gf9_A 82 -----------------------------------------ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120 (189)
T ss_dssp -----------------------------------------CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred -----------------------------------------HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 555556667789999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ...++|+++|+||+|+... +.++.+++..+++ ..++++++|||+
T Consensus 121 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~ 167 (189)
T 2gf9_A 121 KTY-SWDNAQVILVGNKCDLEDE-------------------------------RVVPAEDGRRLAD-DLGFEFFEASAK 167 (189)
T ss_dssp HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTT
T ss_pred HHh-cCCCCCEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECC
Confidence 775 3468999999999999765 5667778888876 446789999999
Q ss_pred CCccHHHHHHHHHHHHHHh
Q psy1524 295 DNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~ 313 (592)
+|.||+++|+.+++.+.++
T Consensus 168 ~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=9.1e-27 Score=217.81 Aligned_cols=167 Identities=28% Similarity=0.512 Sum_probs=143.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 66 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------------- 66 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 45679999999999999999999999998888888887 566778888999899999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..++..++..+|++|+|||+++..+++.+..|+..+...
T Consensus 67 --------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 108 (177)
T 1wms_A 67 --------------------------------------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108 (177)
T ss_dssp --------------------------------------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999999999999999988775
Q ss_pred hc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 218 KA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 218 ~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
.. ..++|+++|+||+|+. . +.++.+++..+++.....++++|||+
T Consensus 109 ~~~~~~~~~p~i~v~nK~Dl~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 109 ADVKEPESFPFVILGNKIDIS-E-------------------------------RQVSTEEAQAWCRDNGDYPYFETSAK 156 (177)
T ss_dssp HTCSCTTTSCEEEEEECTTCS-S-------------------------------CSSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred ccccccCCCcEEEEEECCccc-c-------------------------------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 32 2678999999999987 3 45677888888875667889999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAKV 312 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~ 312 (592)
+|.||+++|+.+++.+..
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998854
No 39
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.9e-28 Score=229.10 Aligned_cols=169 Identities=27% Similarity=0.466 Sum_probs=149.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 82 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ---------------- 82 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------------
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------------
Confidence 446789999999999999999999999998888888877 667777888888899999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.+..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus 83 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 83 ---------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123 (191)
T ss_dssp ---------------------------------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...++|+|+|+||+|+... +.+..+++..+++ ..++++++|||++|
T Consensus 124 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 124 Y-SWDNAQVILVGNKCDMEEE-------------------------------RVVPTEKGQLLAE-QLGFDFFEASAKEN 170 (191)
T ss_dssp H-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTT
T ss_pred h-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCC
Confidence 5 4568999999999999766 6677888888877 45678999999999
Q ss_pred ccHHHHHHHHHHHHHHhc
Q psy1524 297 TNITQVFKELLVQAKVKY 314 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~ 314 (592)
.||+++|+.+++.+..+.
T Consensus 171 ~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDKM 188 (191)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999986653
No 40
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=6e-27 Score=225.42 Aligned_cols=168 Identities=24% Similarity=0.405 Sum_probs=135.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+..+||+|+|++|||||||+|+|++ ..|.+.+.++..+++.+.+.+++..+.+.+|||+|.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~----------------- 66 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN----------------- 66 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccC-----------------
Confidence 4569999999999999999999995 345555555445777888899999999999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+. +..+...+++.+|++|+|||++++.||+.+..|+..+..
T Consensus 67 --------------------------------------~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~ 108 (192)
T 2cjw_A 67 --------------------------------------KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR 108 (192)
T ss_dssp ------------------------------------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------cchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 11 223445678889999999999999999999999988877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.....++|+|+|+||+|+..+ +.+..+++..++. ..++.|++|||++|
T Consensus 109 ~~~~~~~piilV~NK~Dl~~~-------------------------------r~v~~~~~~~~a~-~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 109 ARQTEDIPIILVGNKSDLVRX-------------------------------REVSVSEGRAXAV-VFDXKFIETSAAVQ 156 (192)
T ss_dssp HTTTSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTT
T ss_pred hhCCCCCeEEEEEechhhhcc-------------------------------ccccHHHHHHHHH-HhCCceEEeccccC
Confidence 544467999999999999765 5677777777765 45678999999999
Q ss_pred ccHHHHHHHHHHHHHHhc
Q psy1524 297 TNITQVFKELLVQAKVKY 314 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~~ 314 (592)
.||+++|+.+++.+....
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999986543
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7e-27 Score=219.16 Aligned_cols=168 Identities=27% Similarity=0.466 Sum_probs=137.6
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
..+..+||+|+|++|||||||+++|+++.+. ..+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--------------- 70 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--------------- 70 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------
Confidence 3467899999999999999999999998885 46677777 555666788999999999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+.
T Consensus 71 ----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 110 (180)
T 2g6b_A 71 ----------------------------------------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 110 (180)
T ss_dssp ------------------------------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 6677777788999999999999999999999999999887
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.. ...++|+++|+||+|+... +.+..+++..+++ ..+.++++|||++
T Consensus 111 ~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 157 (180)
T 2g6b_A 111 EY-AQHDVALMLLGNKVDSAHE-------------------------------RVVKREDGEKLAK-EYGLPFMETSAKT 157 (180)
T ss_dssp HH-SCTTCEEEEEEECCSTTSC-------------------------------CCSCHHHHHHHHH-HHTCCEEECCTTT
T ss_pred Hh-CCCCCcEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCC
Confidence 76 3468999999999999865 5677778888876 3456899999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+.+++.+...
T Consensus 158 ~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988543
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=6.9e-27 Score=219.39 Aligned_cols=165 Identities=26% Similarity=0.437 Sum_probs=144.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 71 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------------- 71 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC-----------------
Confidence 35679999999999999999999999999887778877 566777888988899999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 72 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (181)
T 2efe_B 72 --------------------------------------ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113 (181)
T ss_dssp --------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 777788888999999999999999999999999999988876
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+++|+||+|+.+. +.++.+++..+++ ..+.++++|||++|.
T Consensus 114 -~~~~~p~i~v~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 114 -GNPNMVMALAGNKSDLLDA-------------------------------RKVTAEDAQTYAQ-ENGLFFMETSAKTAT 160 (181)
T ss_dssp -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEECCSSSCT
T ss_pred -cCCCCcEEEEEECCccccc-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCC
Confidence 3468999999999999765 5677788888876 456789999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.|++.+.
T Consensus 161 gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 161 NVKEIFYEIARRLP 174 (181)
T ss_dssp THHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=1e-26 Score=223.51 Aligned_cols=167 Identities=29% Similarity=0.468 Sum_probs=146.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 67 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL----------------- 67 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc-----------------
Confidence 45789999999999999999999999999888888877 566677788898999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 68 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 109 (203)
T 1zbd_A 68 --------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 109 (203)
T ss_dssp --------------------------------------GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 778888889999999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|+|+||+|+... +.++.+++..+++ ..++++++|||++|.
T Consensus 110 -~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 110 -SWDNAQVLLVGNKCDMEDE-------------------------------RVVSSERGRQLAD-HLGFEFFEASAKDNI 156 (203)
T ss_dssp -SCSSCEEEEEEECTTCTTS-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTB
T ss_pred -cCCCCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HCCCeEEEEECCCCC
Confidence 3467899999999999765 5677788888877 446789999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy1524 298 NITQVFKELLVQAKVK 313 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~ 313 (592)
||+++|+.|++.+..+
T Consensus 157 gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 157 NVKQTFERLVDVICEK 172 (203)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988664
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=6.3e-27 Score=222.83 Aligned_cols=166 Identities=25% Similarity=0.436 Sum_probs=143.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 79 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------------- 79 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 35679999999999999999999999999888888887 677778888998899999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++. .+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus 80 --------------------------------------~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 121 (189)
T 1z06_A 80 --------------------------------------ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121 (189)
T ss_dssp --------------------------------------HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred --------------------------------------hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 6777 7788899999999999999999999999999999988
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.....++|+|+|+||+|+.+. +.++.+++..+++ ..++.+++|||++|
T Consensus 122 ~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 122 HLLANDIPRILVGNKCDLRSA-------------------------------IQVPTDLAQKFAD-THSMPLFETSAKNP 169 (189)
T ss_dssp HCCCSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCCEEECCSSSG
T ss_pred hcCCCCCCEEEEEECcccccc-------------------------------ceeCHHHHHHHHH-HcCCEEEEEeCCcC
Confidence 754678999999999999765 5677788888876 45678999999999
Q ss_pred ---ccHHHHHHHHHHHHH
Q psy1524 297 ---TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ---~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.|++.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999988763
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.4e-27 Score=223.94 Aligned_cols=177 Identities=21% Similarity=0.408 Sum_probs=146.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~------------------ 76 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ------------------ 76 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999989999999877778888998999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~ 217 (592)
++|..++..+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus 77 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (194)
T 2atx_A 77 -------------------------------------EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY 119 (194)
T ss_dssp -------------------------------------SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred -------------------------------------cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 566667777899999999999999999999997 688888775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..++|+++|+||+|+.+..... ..+. ....+.++.+++..+++......|++|||++|.
T Consensus 120 --~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 178 (194)
T 2atx_A 120 --APNVPFLLIGTQIDLRDDPKTL--------ARLN-----------DMKEKPICVEQGQKLAKEIGACCYVECSALTQK 178 (194)
T ss_dssp --STTCCEEEEEECTTSTTCHHHH--------HHHT-----------TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCT
T ss_pred --CCCCCEEEEEEChhhcccccch--------hhcc-----------cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCC
Confidence 3589999999999997642100 0000 011257888888888875544489999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+++.+.
T Consensus 179 gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 179 GLKTVFDEAIIAIL 192 (194)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=1e-26 Score=215.27 Aligned_cols=163 Identities=28% Similarity=0.416 Sum_probs=143.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
++.+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------ 65 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL------------------ 65 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc------------------
Confidence 4679999999999999999999999998888888887 556677788888899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+...
T Consensus 66 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~- 107 (170)
T 1z0j_A 66 -------------------------------------ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH- 107 (170)
T ss_dssp -------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-
T ss_pred -------------------------------------hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence 777788888999999999999999999999999999988775
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
....+|+++|+||+|+.+. +.+..+++..+++ ....+++++||++|.|
T Consensus 108 ~~~~~~iilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 108 GPPSIVVAIAGNKCDLTDV-------------------------------REVMERDAKDYAD-SIHAIFVETSAKNAIN 155 (170)
T ss_dssp SCTTSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBS
T ss_pred CCCCCcEEEEEECCccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCcC
Confidence 4578999999999999865 5677788888876 4567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 156 i~~l~~~i~~~i 167 (170)
T 1z0j_A 156 INELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 47
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=225.62 Aligned_cols=180 Identities=24% Similarity=0.414 Sum_probs=138.5
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ----------------- 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-----------------
Confidence 446779999999999999999999999999888999999888888889999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~ 216 (592)
++|..++..++.++|++|+|||++++.+|+.+. .|+..+..
T Consensus 79 --------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 120 (201)
T 2q3h_A 79 --------------------------------------DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120 (201)
T ss_dssp --------------------------------------TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred --------------------------------------HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 556666677899999999999999999999997 68888876
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++|+|||+||+|+........ .+ .....+.++.+++..+++......|++|||++|
T Consensus 121 ~--~~~~p~ilv~nK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 179 (201)
T 2q3h_A 121 H--CPKAPIILVGTQSDLREDVKVLI--------EL-----------DKCKEKPVPEEAAKLLAEEIKAASYIECSALTQ 179 (201)
T ss_dssp H--CSSSCEEEEEECGGGGGCHHHHH--------HH-----------HTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred h--CCCCCEEEEEECHhhhhchhhhh--------hh-----------cccccccCCHHHHHHHHHhcCCcEEEEEecCCC
Confidence 5 35899999999999976411000 00 001126678888888887554458999999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||+++|+.+++.+...
T Consensus 180 ~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 180 KNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988644
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=4.8e-27 Score=217.12 Aligned_cols=163 Identities=31% Similarity=0.503 Sum_probs=143.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ------------------ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence 4679999999999999999999999999888888887 677788888998999999999998
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+....
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 107 (168)
T 1z2a_A 65 -------------------------------------EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV 107 (168)
T ss_dssp -------------------------------------GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred -------------------------------------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 6666677788999999999999999999999999999887764
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.+.|+++|+||+|+.+. +.++.+++..+++ ..+.+++++||++|.|
T Consensus 108 --~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 108 --GDIPTALVQNKIDLLDD-------------------------------SCIKNEEAEGLAK-RLKLRFYRTSVKEDLN 153 (168)
T ss_dssp --CSCCEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEECBTTTTBS
T ss_pred --CCCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCeEEEEecCCCCC
Confidence 67899999999999865 5667778888776 4567899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+++.+.
T Consensus 154 i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 154 VSEVFKYLAEKHL 166 (168)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 49
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=3.3e-27 Score=224.12 Aligned_cols=178 Identities=22% Similarity=0.423 Sum_probs=145.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 65 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------ 65 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS------------------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999888899998777777888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~ 217 (592)
+.|..++..++..+|++|+|||++++.+|+.+ ..|+..+...
T Consensus 66 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~ 108 (184)
T 1m7b_A 66 -------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 108 (184)
T ss_dssp -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred -------------------------------------hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 66777777789999999999999999999999 6788888764
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-CC
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-DN 296 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-tg 296 (592)
..++|+|+|+||+|+..+.... ..-.....+.++.+++..+++.....+|++|||+ +|
T Consensus 109 --~~~~piilv~nK~Dl~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 167 (184)
T 1m7b_A 109 --CPNTKMLLVGCKSDLRTDVSTL-------------------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 167 (184)
T ss_dssp --CTTCEEEEEEECGGGGGCHHHH-------------------HHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH
T ss_pred --CCCCCEEEEEEcchhhcchhhH-------------------hhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCC
Confidence 3589999999999997531000 0000112267888999999875555789999999 68
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
.||+++|+.+++.+..
T Consensus 168 ~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 168 NSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998853
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=219.92 Aligned_cols=167 Identities=28% Similarity=0.418 Sum_probs=141.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..+..+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 68 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ---------------- 68 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG----------------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCc----------------
Confidence 346789999999999999999999999988877777776 677788888999999999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.+..+...++..+|++|+|||++++.+++.+..|+..+..
T Consensus 69 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 69 ---------------------------------------ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ 109 (181)
T ss_dssp ---------------------------------------GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 55556666778999999999999999999999999998877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++|+|+|+||+|+... +.+..+++..++. ..++++++|||++|
T Consensus 110 ~--~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 110 N--CDDVCRILVGNKNDDPER-------------------------------KVVETEDAYKFAG-QMGIQLFETSAKEN 155 (181)
T ss_dssp H--CTTSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTT
T ss_pred h--CCCCCEEEEEECCCCchh-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCC
Confidence 4 468999999999998866 5677778888776 44678999999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
.||+++|+.+++.+...
T Consensus 156 ~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 156 VNVEEMFNCITELVLRA 172 (181)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998654
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=3.1e-27 Score=221.15 Aligned_cols=166 Identities=25% Similarity=0.335 Sum_probs=142.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCC-eEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNG-VHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg-~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++ ..+.++||||+|+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 66 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ----------------- 66 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC-----------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC-----------------
Confidence 4679999999999999999999999988877778886 77788888876 6789999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus 67 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 108 (178)
T 2hxs_A 67 --------------------------------------TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV 108 (178)
T ss_dssp --------------------------------------CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 677778888999999999999999999999999999888764
Q ss_pred hc-CCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 218 KA-STAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 218 ~~-~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.. ....| +++|+||+|+.+. +.++.+++..+++ ..++++++|||++
T Consensus 109 ~~~~~~~~~iilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 156 (178)
T 2hxs_A 109 SEESETQPLVALVGNKIDLEHM-------------------------------RTIKPEKHLRFCQ-ENGFSSHFVSAKT 156 (178)
T ss_dssp HHHHTCCCEEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEEECTTT
T ss_pred hcccCCCCeEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEeCCC
Confidence 21 12445 8999999999765 5677788888876 4467899999999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|.||+++|+.+++.+..
T Consensus 157 ~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 157 GDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CTTHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998843
No 52
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=227.59 Aligned_cols=171 Identities=27% Similarity=0.380 Sum_probs=137.3
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.+..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------- 84 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ-------------- 84 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH--------------
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc--------------
Confidence 34456789999999999999999999999998887888877 677778888998899999999998
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus 85 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 123 (200)
T 2o52_A 85 -----------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123 (200)
T ss_dssp -----------------------------------------HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred -----------------------------------------HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 666667778899999999999999999999999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ...++|+++|+||+|+... +.++.+++..+++ ..++.+++|||+
T Consensus 124 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~SA~ 170 (200)
T 2o52_A 124 RTL-ASPNIVVILCGNKKDLDPE-------------------------------REVTFLEASRFAQ-ENELMFLETSAL 170 (200)
T ss_dssp HHH-TCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEECTT
T ss_pred HHh-cCCCCcEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence 775 3468999999999999765 5677788888876 456789999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
+|.||+++|+.+++.+..+.
T Consensus 171 ~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 171 TGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.4e-26 Score=223.52 Aligned_cols=170 Identities=29% Similarity=0.481 Sum_probs=147.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 67 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ----------------- 67 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT-----------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCCh-----------------
Confidence 46779999999999999999999999999888888887 666777888999999999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
++|..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 68 --------------------------------------~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~ 109 (206)
T 2bcg_Y 68 --------------------------------------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 109 (206)
T ss_dssp --------------------------------------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 556666667789999999999999999999999999988776
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|++||+||+|+... +.+..+++..++. ..+.++++|||++|.
T Consensus 110 -~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 156 (206)
T 2bcg_Y 110 -ATSTVLKLLVGNKCDLKDK-------------------------------RVVEYDVAKEFAD-ANKMPFLETSALDST 156 (206)
T ss_dssp -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCCEEECCTTTCT
T ss_pred -cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCC
Confidence 3567999999999999765 5677788888876 456789999999999
Q ss_pred cHHHHHHHHHHHHHHhccc
Q psy1524 298 NITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~~ 316 (592)
||+++|+.+++.+......
T Consensus 157 gi~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 157 NVEDAFLTMARQIKESMSQ 175 (206)
T ss_dssp THHHHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999776543
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=6.8e-27 Score=216.54 Aligned_cols=164 Identities=30% Similarity=0.520 Sum_probs=135.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 62 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ------------------- 62 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG-------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence 468999999999999999999999998877888877 666777888888899999999998
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+... .
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~ 105 (170)
T 1g16_A 63 ------------------------------------ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-A 105 (170)
T ss_dssp ------------------------------------GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-S
T ss_pred ------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence 566666777899999999999999999999999999988776 3
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+. . +.+..+++..+++ ..+.++++|||++|.||
T Consensus 106 ~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 106 NDEAQLLLVGNKSDME-T-------------------------------RVVTADQGEALAK-ELGIPFIESSAKNDDNV 152 (170)
T ss_dssp CTTCEEEEEEECTTCT-T-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTTBSH
T ss_pred CCCCcEEEEEECccCC-c-------------------------------CccCHHHHHHHHH-HcCCeEEEEECCCCCCH
Confidence 4688999999999993 2 4566777787776 34578999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1524 300 TQVFKELLVQAKVK 313 (592)
Q Consensus 300 eeLf~~Li~~i~~~ 313 (592)
+++|+.+++.+.++
T Consensus 153 ~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 153 NEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=8.9e-27 Score=215.38 Aligned_cols=165 Identities=31% Similarity=0.458 Sum_probs=142.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------- 62 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ------------------- 62 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 468999999999999999999999998888888887 566677888999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+... .
T Consensus 63 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~ 105 (170)
T 1ek0_A 63 ------------------------------------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-A 105 (170)
T ss_dssp ------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred ------------------------------------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHh-c
Confidence 778888888999999999999999999999999999988776 3
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+.... ..+.+..+++..+++ ..+.++++|||++|.||
T Consensus 106 ~~~~piilv~nK~Dl~~~~----------------------------~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEG----------------------------GERKVAREEGEKLAE-EKGLLFFETSAKTGENV 156 (170)
T ss_dssp CTTCEEEEEEECGGGGGSS----------------------------CCCCSCHHHHHHHHH-HHTCEEEECCTTTCTTH
T ss_pred CCCCcEEEEEECCCccccc----------------------------cccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCH
Confidence 5689999999999997641 115677778887776 45678999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 300 TQVFKELLVQA 310 (592)
Q Consensus 300 eeLf~~Li~~i 310 (592)
+++|+.+++.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=7.8e-27 Score=224.59 Aligned_cols=171 Identities=30% Similarity=0.445 Sum_probs=135.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 87 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ----------------- 87 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC-----------------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 35679999999999999999999999998877888877 666778888999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 88 --------------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~ 129 (199)
T 2p5s_A 88 --------------------------------------ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129 (199)
T ss_dssp --------------------------------------TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence 778888889999999999999999999999999999888765
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|||+||+|+.+.... ...+.+..+++..+++ ..++++++|||++|.
T Consensus 130 -~~~~~piilv~NK~Dl~~~~~~-------------------------~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 130 -AHETVPIMLVGNKADIRDTAAT-------------------------EGQKCVPGHFGEKLAM-TYGALFCETSAKDGS 182 (199)
T ss_dssp -C---CCEEEEEECGGGHHHHHH-------------------------TTCCCCCHHHHHHHHH-HHTCEEEECCTTTCT
T ss_pred -cCCCCCEEEEEECccccccccc-------------------------ccccccCHHHHHHHHH-HcCCeEEEeeCCCCC
Confidence 3457899999999999743100 0126677888888877 446789999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+++.+.
T Consensus 183 gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 183 NIVEAVLHLAREVK 196 (199)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999873
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.8e-27 Score=222.97 Aligned_cols=165 Identities=27% Similarity=0.405 Sum_probs=143.9
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 82 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ---------------- 82 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS----------------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc----------------
Confidence 346789999999999999999999999998878888887 455666778888899999999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus 83 ---------------------------------------~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~ 123 (192)
T 2fg5_A 83 ---------------------------------------ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123 (192)
T ss_dssp ---------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999998877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...++|+++|+||+|+.+. +.++.+++..+++ ..+.++++|||++|
T Consensus 124 ~-~~~~~piiiv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 124 H-GPENIVMAIAGNKCDLSDI-------------------------------REVPLKDAKEYAE-SIGAIVVETSAKNA 170 (192)
T ss_dssp H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-TTTCEEEECBTTTT
T ss_pred h-CCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence 6 3567999999999999765 5677788888887 45678999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.||+++|+.|++.+
T Consensus 171 ~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 171 INIEELFQGISRQI 184 (192)
T ss_dssp BSHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998876
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-26 Score=220.38 Aligned_cols=168 Identities=27% Similarity=0.386 Sum_probs=145.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 74 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ----------------- 74 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS-----------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999888888876 666777888999999999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..+...+++.+|++|+|||++++.++..+..|+..+...
T Consensus 75 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 116 (195)
T 1x3s_A 75 --------------------------------------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 116 (195)
T ss_dssp --------------------------------------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC
T ss_pred --------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 677778888999999999999999999999999999988765
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
....++|+++|+||+|+.. +.+..+++..+++ .....+++|||++|.
T Consensus 117 ~~~~~~p~ilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 117 CTRNDIVNMLVGNKIDKEN--------------------------------REVDRNEGLKFAR-KHSMLFIEASAKTCD 163 (195)
T ss_dssp CSCSCCEEEEEEECTTSSS--------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCT
T ss_pred cCcCCCcEEEEEECCcCcc--------------------------------cccCHHHHHHHHH-HcCCEEEEecCCCCC
Confidence 4446899999999999943 3566777788776 456789999999999
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy1524 298 NITQVFKELLVQAKVKY 314 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~ 314 (592)
||+++|+.|++.+....
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTP 180 (195)
T ss_dssp THHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999986543
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=1.1e-26 Score=217.44 Aligned_cols=170 Identities=25% Similarity=0.471 Sum_probs=134.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.++ +..+.+.||||+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ---------------- 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC----------------
Confidence 35679999999999999999999999998888888886 7777777777 66788999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+.+..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus 69 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (182)
T 1ky3_A 69 ---------------------------------------ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109 (182)
T ss_dssp -----------------------------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 66777777789999999999999999999999999998877
Q ss_pred hhc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524 217 TKA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 217 ~~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA 293 (592)
... ..++|+++|+||+|+.... +.++.+++..+++.....++++|||
T Consensus 110 ~~~~~~~~~~p~ilv~nK~Dl~~~~------------------------------~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 110 HANVNSPETFPFVILGNKIDAEESK------------------------------KIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp HHCCSCTTTCCEEEEEECTTSCGGG------------------------------CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred HhcccCcCCCcEEEEEECCcccccc------------------------------ccCCHHHHHHHHHhcCCCeEEEEec
Confidence 532 2678999999999996541 4567788888887566788999999
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q psy1524 294 KDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~~ 313 (592)
++|.||+++|+.+++.+..+
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988654
No 60
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=3.3e-27 Score=228.80 Aligned_cols=175 Identities=23% Similarity=0.394 Sum_probs=145.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 67 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ------------------- 67 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4679999999999999999999999999988999999877778888999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
++|..++..++.++|++|+|||++++.+|+.+. .|+..+...
T Consensus 68 ------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~- 110 (212)
T 2j0v_A 68 ------------------------------------EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF- 110 (212)
T ss_dssp ------------------------------------CCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------HHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 667777777899999999999999999999997 788888765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|||+||+|+.+..... ....+.++.+++..+++.....+|++|||++|.|
T Consensus 111 -~~~~piilv~nK~Dl~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 166 (212)
T 2j0v_A 111 -APNVPIVLVGTKLDLRDDKGYL-----------------------ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166 (212)
T ss_dssp -CTTCCEEEEEECHHHHTCHHHH-----------------------HTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred -CCCCCEEEEEeCHHhhhCcccc-----------------------ccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence 3589999999999997642100 0011356788888888754445899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1524 299 ITQVFKELLVQAKVKY 314 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~ 314 (592)
|+++|+.+++.+....
T Consensus 167 i~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 167 VKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999986543
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=4.7e-27 Score=228.58 Aligned_cols=172 Identities=23% Similarity=0.414 Sum_probs=145.2
Q ss_pred CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCe----------EEEEEEEeCCCCCCC
Q psy1524 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGV----------HLKLDILDTSGEQSG 123 (592)
Q Consensus 55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~----------~v~L~I~DT~G~~~~ 123 (592)
.....++.+||+|+|++|||||||+++|+++.+...+.+|+. ++....+.+++. .+.++||||+|+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--- 94 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--- 94 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH---
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc---
Confidence 344557889999999999999999999999999877778877 555667777766 788999999999
Q ss_pred CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS 203 (592)
Q Consensus 124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S 203 (592)
++|..++..++..+|++|+|||++++.+
T Consensus 95 ----------------------------------------------------~~~~~~~~~~~~~~d~iilV~D~~~~~s 122 (217)
T 2f7s_A 95 ----------------------------------------------------ERFRSLTTAFFRDAMGFLLMFDLTSQQS 122 (217)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHTTCCEEEEEEETTCHHH
T ss_pred ----------------------------------------------------HhHHhHHHHHhcCCCEEEEEEECcCHHH
Confidence 7888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc
Q psy1524 204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD 283 (592)
Q Consensus 204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~ 283 (592)
|+.+..|+..+.......++|+|||+||+|+.+. +.++.+++..+++ .
T Consensus 123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~ 170 (217)
T 2f7s_A 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-------------------------------REVNERQARELAD-K 170 (217)
T ss_dssp HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc-------------------------------cccCHHHHHHHHH-H
Confidence 9999988887765433368999999999999765 5677788888876 4
Q ss_pred CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 284 WENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 284 ~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
.++++++|||++|.||+++|+.|++.+...
T Consensus 171 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 171 YGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998654
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=8.2e-27 Score=217.80 Aligned_cols=163 Identities=29% Similarity=0.518 Sum_probs=143.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+. +.....+.+++..+.+.||||+|+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------ 73 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------------------ 73 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCc------------------
Confidence 4669999999999999999999999999888888877 777888889999899999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 74 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~- 115 (179)
T 2y8e_A 74 -------------------------------------ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE- 115 (179)
T ss_dssp -------------------------------------GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred -------------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 677778888899999999999999999999999999988775
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+.+. +.++.+++..+++ ..+.++++|||++|.|
T Consensus 116 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 116 RGSDVIIMLVGNKTDLSDK-------------------------------RQVSTEEGERKAK-ELNVMFIETSAKAGYN 163 (179)
T ss_dssp HTTSSEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEEBTTTTBS
T ss_pred cCCCCcEEEEEECCccccc-------------------------------CcCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence 3467999999999999765 5677777777776 4467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 164 i~~l~~~l~~~~ 175 (179)
T 2y8e_A 164 VKQLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 63
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=7e-27 Score=227.66 Aligned_cols=178 Identities=22% Similarity=0.417 Sum_probs=145.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 86 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------ 86 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCS------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 45679999999999999999999999999988899998777777888998999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~ 217 (592)
+.|..++..++..+|++|+|||++++.+|+.+ ..|+..+...
T Consensus 87 -------------------------------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~ 129 (205)
T 1gwn_A 87 -------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 129 (205)
T ss_dssp -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred -------------------------------------HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 66777777789999999999999999999999 6788888764
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-CC
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-DN 296 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-tg 296 (592)
..++|+|||+||+|+..+..... .-.....+.++.+++..+++......|++|||+ +|
T Consensus 130 --~~~~piilv~nK~Dl~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 188 (205)
T 1gwn_A 130 --CPNTKMLLVGCKSDLRTDVSTLV-------------------ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 188 (205)
T ss_dssp --CTTCEEEEEEECGGGGGCHHHHH-------------------HHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCH
T ss_pred --CCCCCEEEEEechhhccchhhhh-------------------hhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCC
Confidence 35899999999999975311000 000112267888899999875555789999999 68
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAKV 312 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~ 312 (592)
.||+++|+.+++.+..
T Consensus 189 ~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 189 NSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998854
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=213.42 Aligned_cols=163 Identities=39% Similarity=0.624 Sum_probs=141.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+|+|++|||||||+++|+++.+...+.+|+...+...+..++..+.+.||||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~-------------------- 61 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS-------------------- 61 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC--------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 358999999999999999999999998888888888777777788888899999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA- 219 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~- 219 (592)
+++..+...++..+|++|+|||++++.+++.+..|+..+.+...
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 106 (172)
T 2erx_A 62 -----------------------------------HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD 106 (172)
T ss_dssp -----------------------------------SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-
T ss_pred -----------------------------------hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence 77788888899999999999999999999999999888877532
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+++|+||+|+... +.+..+++..++. ..+.++++|||++|.||
T Consensus 107 ~~~~pii~v~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 107 VESIPIMLVGNKCDESPS-------------------------------REVQSSEAEALAR-TWKCAFMETSAKLNHNV 154 (172)
T ss_dssp --CCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTBSH
T ss_pred CCCCCEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEecCCCCcCH
Confidence 257899999999999765 5566677777766 44678999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 300 TQVFKELLVQA 310 (592)
Q Consensus 300 eeLf~~Li~~i 310 (592)
+++|+.+++.+
T Consensus 155 ~~l~~~l~~~~ 165 (172)
T 2erx_A 155 KELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=5.2e-26 Score=208.64 Aligned_cols=163 Identities=34% Similarity=0.567 Sum_probs=143.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
..+||+++|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------------------- 61 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ-------------------- 61 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 358999999999999999999999999888888888877888888999999999999999
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
+++..+...++..+|++++|||+++..+++.+..|+..+......
T Consensus 62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 106 (166)
T 2ce2_X 62 -----------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106 (166)
T ss_dssp -----------------------------------SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -----------------------------------hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 677788888999999999999999999999999999998877555
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+... .+..+++..+++ ..+.+++++||++|.|++
T Consensus 107 ~~~p~iiv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAAR--------------------------------TVESRQAQDLAR-SYGIPYIETSAKTRQGVE 153 (166)
T ss_dssp SCCCEEEEEECTTCSCC--------------------------------CSCHHHHHHHHH-HHTCCEEEECTTTCTTHH
T ss_pred CCCcEEEEEEchhhhhc--------------------------------ccCHHHHHHHHH-HcCCeEEEecCCCCCCHH
Confidence 68999999999998752 345667777766 446789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+++.+.
T Consensus 154 ~l~~~l~~~~~ 164 (166)
T 2ce2_X 154 DAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 66
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-26 Score=228.26 Aligned_cols=169 Identities=30% Similarity=0.458 Sum_probs=138.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 72 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ----------------- 72 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT-----------------
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 46789999999999999999999999999887888877 666777888998899999999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
++|..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 73 --------------------------------------~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~ 114 (223)
T 3cpj_B 73 --------------------------------------ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114 (223)
T ss_dssp --------------------------------------TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 566666677899999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|||+||+|+... +.++.+++..+++ ..+..|++|||++|.
T Consensus 115 -~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 115 -ADDNVAVGLIGNKSDLAHL-------------------------------RAVPTEESKTFAQ-ENQLLFTETSALNSE 161 (223)
T ss_dssp -CC--CEEEEEECCGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCCC-CC
T ss_pred -CCCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence 3467899999999999765 5677788888876 456789999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q psy1524 298 NITQVFKELLVQAKVKYN 315 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~~ 315 (592)
||+++|+.|++.+.....
T Consensus 162 gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 162 NVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CHHHHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999865443
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=2e-26 Score=216.77 Aligned_cols=176 Identities=23% Similarity=0.412 Sum_probs=145.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 63 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------- 63 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS-------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4679999999999999999999999999988899998877888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
++|..+...++..+|++|+|||++++.+|+.+. .|+..+...
T Consensus 64 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 106 (186)
T 1mh1_A 64 ------------------------------------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH- 106 (186)
T ss_dssp ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh-
Confidence 666777777899999999999999999999997 688877764
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+++|+||+|+.+.....+ .+. ....+.++.+++..+++.....++++|||++|.|
T Consensus 107 -~~~~piilv~nK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 166 (186)
T 1mh1_A 107 -CPNTPIILVGTKLDLRDDKDTIE--------KLK-----------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166 (186)
T ss_dssp -STTSCEEEEEECHHHHTCHHHHH--------HHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred -CCCCCEEEEeEcccccccchhhh--------hhc-----------ccccccCCHHHHHHHHHhcCCcEEEEecCCCccC
Confidence 34899999999999975411000 000 0012577888888888754444899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+++.+.
T Consensus 167 i~~l~~~l~~~~~ 179 (186)
T 1mh1_A 167 LKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999884
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=5.2e-26 Score=216.09 Aligned_cols=167 Identities=34% Similarity=0.552 Sum_probs=136.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.+..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 79 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------ 79 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCCh------------------
Confidence 35679999999999999999999999999888888888877788888999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++++|||+++..+++.+..|+..+....
T Consensus 80 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 122 (190)
T 3con_A 80 -------------------------------------EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK 122 (190)
T ss_dssp -----------------------------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 6677777888999999999999999999999999999888765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+++|+||+|+... .+..+++..+++ ..++++++|||++|.|
T Consensus 123 ~~~~~p~ilv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 123 DSDDVPMVLVGNKCDLPTR--------------------------------TVDTKQAHELAK-SYGIPFIETSAKTRQG 169 (190)
T ss_dssp TCSCCCEEEEEECTTCSCC--------------------------------CSCHHHHHHHHH-HHTCCEEECCTTTCTT
T ss_pred CCCCCeEEEEEECCcCCcc--------------------------------cCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence 5568999999999998642 355677777776 3456899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.|++.+...
T Consensus 170 i~~l~~~l~~~~~~~ 184 (190)
T 3con_A 170 VEDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=225.62 Aligned_cols=178 Identities=27% Similarity=0.422 Sum_probs=128.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ------------------- 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4579999999999999999999999999888889998877888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
++|..++..++.++|++|+|||++++.+|+.+. .|+..+...
T Consensus 93 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 135 (214)
T 2j1l_A 93 ------------------------------------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF- 135 (214)
T ss_dssp ------------------------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-
Confidence 777788888899999999999999999999997 688888764
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|||+||+|+........ .+. ....+.++.+++..+++......+++|||++|.|
T Consensus 136 -~~~~piilv~nK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 195 (214)
T 2j1l_A 136 -CKKVPIIVVGCKTDLRKDKSLVN--------KLR-----------RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195 (214)
T ss_dssp -CSSCCEEEEEECGGGGSCHHHHH--------HHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred -CCCCCEEEEEEChhhhccchhhh--------hhc-----------ccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 36799999999999976521000 000 0012578888889888754444899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
|+++|+.+++.+...
T Consensus 196 i~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 196 VHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998643
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=7.5e-26 Score=214.78 Aligned_cols=163 Identities=28% Similarity=0.394 Sum_probs=139.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeE-----------------------------
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVH----------------------------- 109 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~----------------------------- 109 (592)
+..+||+|+|++|||||||+++|++..+...+.+|++ ++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 5679999999999999999999999999888888887 6666777777655
Q ss_pred --------EEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHH
Q psy1524 110 --------LKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181 (592)
Q Consensus 110 --------v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 181 (592)
+.+.||||+|+ +.+..+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~-------------------------------------------------------~~~~~~ 109 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ-------------------------------------------------------ERYASI 109 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG-------------------------------------------------------GGCTTT
T ss_pred cccCccceeEEEEEECCCc-------------------------------------------------------HHHHHH
Confidence 88899999998 677778
Q ss_pred HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccc
Q psy1524 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCA 261 (592)
Q Consensus 182 ~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~ 261 (592)
...++..+|++|+|||++++.+++.+..|+..+.... ..|+|+|+||+| ...
T Consensus 110 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~------------------------ 161 (208)
T 3clv_A 110 VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNK------------------------ 161 (208)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-------------------------
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-ccc------------------------
Confidence 8889999999999999999999999999999887752 399999999999 333
Q ss_pred ccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 262 HQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 262 ~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
+.+..+++..+++ ..+.++++|||++|.||+++|+++++.+..+
T Consensus 162 -------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 -------FQVDILEVQKYAQ-DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -------CCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -------ccCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5667788888877 4567899999999999999999999988654
No 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=4e-26 Score=219.45 Aligned_cols=169 Identities=27% Similarity=0.472 Sum_probs=143.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|++..+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 67 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ----------------- 67 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS-----------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999888888886 777778888888899999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 68 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (207)
T 1vg8_A 68 --------------------------------------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109 (207)
T ss_dssp --------------------------------------GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 555555566789999999999999999999999999988765
Q ss_pred hcC---CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 218 KAS---TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 218 ~~~---~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... .++|+++|+||+|+.. +.+..+++..++......++++|||+
T Consensus 110 ~~~~~~~~~piilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 110 ASPRDPENFPFVVLGNKIDLEN--------------------------------RQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp HCCSSGGGSCEEEEEECTTSSC--------------------------------CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred cccccCCCCcEEEEEECCCCcc--------------------------------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 321 4789999999999973 45567778888765667789999999
Q ss_pred CCccHHHHHHHHHHHHHHhc
Q psy1524 295 DNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~~~ 314 (592)
+|.||+++|+.|++.+....
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.6e-26 Score=217.35 Aligned_cols=165 Identities=38% Similarity=0.600 Sum_probs=142.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+.||||+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS------------------- 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGG-------------------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCCh-------------------
Confidence 4569999999999999999999999999888888888777777788998999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..+...++..+|++|+|||++++.+|+.+..|+..+.+...
T Consensus 67 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 110 (199)
T 2gf0_A 67 ------------------------------------HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG 110 (199)
T ss_dssp ------------------------------------GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS
T ss_pred ------------------------------------HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc
Confidence 77888888999999999999999999999999998888877532
Q ss_pred -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+.. +.+..+++..++. .....+++|||++|.|
T Consensus 111 ~~~~~piilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 111 SVEDIPVMLVGNKCDETQ--------------------------------REVDTREAQAVAQ-EWKCAFMETSAKMNYN 157 (199)
T ss_dssp CGGGSCEEEEEECTTCSS--------------------------------CSSCHHHHHHHHH-HHTCEEEECBTTTTBS
T ss_pred CCCCCCEEEEEECccCCc--------------------------------cccCHHHHHHHHH-HhCCeEEEEecCCCCC
Confidence 24789999999999864 2455677777766 4567899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
|+++|+++++.+..
T Consensus 158 i~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 158 VKELFQELLTLETR 171 (199)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987743
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.2e-26 Score=225.00 Aligned_cols=175 Identities=23% Similarity=0.415 Sum_probs=144.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+.+.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL------------------- 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCS-------------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCc-------------------
Confidence 5679999999999999999999999999989999999888888899999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
++|..+...+++.+|++|+|||++++.+|+.+. .|+..+...
T Consensus 89 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 131 (204)
T 4gzl_A 89 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH- 131 (204)
T ss_dssp ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 677777778899999999999999999999997 688877765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+.......+. ......+.++.+++..+++.....++++|||++|.|
T Consensus 132 -~~~~piilv~nK~Dl~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 191 (204)
T 4gzl_A 132 -CPNTPIILVGTKLDLRDDKDTIEK-------------------LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 191 (204)
T ss_dssp -CSSCCEEEEEECHHHHTCHHHHHH-------------------HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred -CCCCCEEEEEechhhccchhhhhh-------------------hhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC
Confidence 368999999999999765211000 000112567888899998866666799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 192 i~~l~~~l~~~~ 203 (204)
T 4gzl_A 192 LKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=3.6e-27 Score=221.51 Aligned_cols=173 Identities=25% Similarity=0.403 Sum_probs=126.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+.+.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ------------------- 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4568999999999999999999999999888888888666555667888889999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
++|..++..+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus 67 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 109 (182)
T 3bwd_D 67 ------------------------------------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY- 109 (182)
T ss_dssp ------------------------------------CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 666777777899999999999999999999997 688888765
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+++|+||+|+.+...... .....+.++.+++..+++.....+|++|||++|.|
T Consensus 110 -~~~~piilv~nK~Dl~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (182)
T 3bwd_D 110 -APGVPIVLVGTKLDLRDDKQFFI---------------------DHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167 (182)
T ss_dssp -CTTCCEEEEEECHHHHTCHHHHH---------------------HC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred -CCCCCEEEEEechhhhcCccccc---------------------ccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 34899999999999976521000 00112456788888888754445899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 168 i~~l~~~l~~~i 179 (182)
T 3bwd_D 168 VKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999877
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=6.6e-26 Score=218.70 Aligned_cols=177 Identities=25% Similarity=0.438 Sum_probs=144.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 83 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ------------------ 83 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCS------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCc------------------
Confidence 35679999999999999999999999999888889988666666788999999999999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~ 217 (592)
++|..++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus 84 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 126 (201)
T 2gco_A 84 -------------------------------------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 126 (201)
T ss_dssp -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred -------------------------------------hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 66777777789999999999999999999999 5677777664
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..++|+++|+||+|+....... ..+. ....+.++.+++..+++......+++|||++|.
T Consensus 127 --~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 185 (201)
T 2gco_A 127 --CPNVPIILVGNKKDLRQDEHTR--------RELA-----------KMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185 (201)
T ss_dssp --STTCCEEEEEECGGGTTCHHHH--------HHHH-----------TTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred --CCCCCEEEEEecHHhhcCccch--------hhhc-----------ccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCC
Confidence 3589999999999997642100 0000 011256788888888875544489999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+++.+.
T Consensus 186 gi~~l~~~i~~~~l 199 (201)
T 2gco_A 186 GVREVFEMATRAGL 199 (201)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=8.2e-26 Score=218.22 Aligned_cols=167 Identities=29% Similarity=0.510 Sum_probs=141.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|++..+...+.+|+. ++....+.+++..+.+.||||+|+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 79 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ----------------- 79 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG-----------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999998877888877 677778888998899999999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus 80 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 121 (213)
T 3cph_A 80 --------------------------------------ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121 (213)
T ss_dssp --------------------------------------GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 666667778899999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...++|+|+|+||+|+. . +.+..+++..+++ ..++++++|||++|.
T Consensus 122 -~~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 122 -ANDEAQLLLVGNKSDME-T-------------------------------RVVTADQGEALAK-ELGIPFIESSAKNDD 167 (213)
T ss_dssp -TTTCSEEEEEEECTTCS-S-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTTB
T ss_pred -cCCCCCEEEEEECCCCc-c-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence 34578999999999993 3 4566777777776 345689999999999
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy1524 298 NITQVFKELLVQAKVKY 314 (592)
Q Consensus 298 gVeeLf~~Li~~i~~~~ 314 (592)
||+++|+.|++.+....
T Consensus 168 gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 168 NVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999886654
No 77
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=1.1e-26 Score=222.81 Aligned_cols=168 Identities=24% Similarity=0.318 Sum_probs=109.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEeeCCe--EEEEEEEeCCCCCCCCcccccccccC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSMNGV--HLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~vdg~--~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
...+||+|+|++|||||||+++|+++ .+...+.+|++ +.....+.+++. .+.+.||||+|+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------- 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS-------------- 83 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--------------
Confidence 46799999999999999999999998 88888888987 777888888887 889999999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+++..++..++..+|++|+|||++++.+|+.+..|+..+
T Consensus 84 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 122 (208)
T 2yc2_C 84 -----------------------------------------DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL 122 (208)
T ss_dssp -----------------------------------------HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 778888888899999999999999999999999999998
Q ss_pred HHhhc--CCCCCEEEEEeCCCCcc-cccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEc
Q psy1524 215 FETKA--STAVPIVVVGNKSDLAD-ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291 (592)
Q Consensus 215 ~~~~~--~~~~PIILVgNK~DL~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~Ev 291 (592)
..... ..++|+|+|+||+|+.. . +.++.+++..+++ ..+..+++|
T Consensus 123 ~~~~~~~~~~~piilv~nK~Dl~~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~ 170 (208)
T 2yc2_C 123 KSARPDRERPLRAVLVANKTDLPPQR-------------------------------HQVRLDMAQDWAT-TNTLDFFDV 170 (208)
T ss_dssp HHHCSCTTSCCEEEEEEECC--------------------------------------CCCHHHHHHHHH-HTTCEEEEC
T ss_pred HHhhcccccCCcEEEEEECcccchhh-------------------------------ccCCHHHHHHHHH-HcCCEEEEe
Confidence 87632 15899999999999976 4 5677888888887 456789999
Q ss_pred ccCC-CccHHHHHHHHHHHHHHhc
Q psy1524 292 SAKD-NTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 292 SAkt-g~gVeeLf~~Li~~i~~~~ 314 (592)
||++ |.||+++|+.+++.+....
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp CC-------CHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999886554
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=6.2e-26 Score=220.77 Aligned_cols=170 Identities=21% Similarity=0.324 Sum_probs=137.4
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
.....+||+|+|++|||||||+|+|+++.+...+.+|++. .....+.. ++..+.+.||||+|+
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------- 71 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--------------- 71 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG---------------
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc---------------
Confidence 3467899999999999999999999999888877788773 33333333 344588999999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
+.+..+...++..+|++|+|||++++.+++.+..|+..+.
T Consensus 72 ----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (218)
T 4djt_A 72 ----------------------------------------EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111 (218)
T ss_dssp ----------------------------------------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ----------------------------------------hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 6666677788999999999999999999999999999888
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.. ...++|+|+|+||+|+.+. +.+..+++..++. ....++++|||++
T Consensus 112 ~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 158 (218)
T 4djt_A 112 AV-VGNEAPIVVCANKIDIKNR-------------------------------QKISKKLVMEVLK-GKNYEYFEISAKT 158 (218)
T ss_dssp HH-HCSSSCEEEEEECTTCC-----------------------------------CCHHHHHHHTT-TCCCEEEEEBTTT
T ss_pred Hh-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEecCC
Confidence 76 3456899999999999765 5677777877776 5677899999999
Q ss_pred CccHHHHHHHHHHHHHHhcc
Q psy1524 296 NTNITQVFKELLVQAKVKYN 315 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~~ 315 (592)
|.||+++|+.+++.+.....
T Consensus 159 g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 159 AHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TBTTTHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 99999999999999865443
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=1.3e-25 Score=214.15 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=127.4
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG 134 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~ 134 (592)
.......+||+|+|++|||||||+++|+++.+.. .+.+|++. ....+ ++..+.++||||+|+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~-~~~~~--~~~~~~~~i~Dt~G~-------------- 73 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY-NVETF--EKGRVAFTVFDMGGA-------------- 73 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE-EEEEE--EETTEEEEEEEECCS--------------
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce-eEEEE--EeCCEEEEEEECCCC--------------
Confidence 3455778999999999999999999999999987 78888872 22333 344577888999999
Q ss_pred CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
+++..++..+++++|++|+|||++++.+|..+..|+..+
T Consensus 74 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~ 112 (199)
T 4bas_A 74 -----------------------------------------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAM 112 (199)
T ss_dssp -----------------------------------------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred -----------------------------------------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 777788888899999999999999999999999998888
Q ss_pred HHhhcC-------CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe
Q psy1524 215 FETKAS-------TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287 (592)
Q Consensus 215 ~~~~~~-------~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~ 287 (592)
...... .++|+|||+||+|+...... ..+..............+.
T Consensus 113 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 113 LKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA----------------------------AELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp HTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH----------------------------HHHHHHHTHHHHHTTSCEE
T ss_pred HhChhhhhcccccCCCCEEEEEECcCCCCCCCH----------------------------HHHHHHhcchhhccCCeeE
Confidence 664211 37899999999999754100 0011111111111235678
Q ss_pred EEEcccCCCccHHHHHHHHHHHHHHhcc
Q psy1524 288 FVEASAKDNTNITQVFKELLVQAKVKYN 315 (592)
Q Consensus 288 ~~EvSAktg~gVeeLf~~Li~~i~~~~~ 315 (592)
+++|||++|.||+++|+.|++.+.....
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999876543
No 80
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2e-25 Score=216.24 Aligned_cols=177 Identities=26% Similarity=0.417 Sum_probs=137.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 83 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ------------------- 83 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4568999999999999999999999999888889988777667888999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~ 218 (592)
+++..+...++..+|++|+|||++++.+|+.+ ..|+..+...
T Consensus 84 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 126 (207)
T 2fv8_A 84 ------------------------------------EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF- 126 (207)
T ss_dssp ------------------------------------TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 55666667788999999999999999999999 5687777664
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+....... ..+. ....+.++.+++..++.......+++|||++|.|
T Consensus 127 -~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 186 (207)
T 2fv8_A 127 -CPNVPIILVANKKDLRSDEHVR--------TELA-----------RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186 (207)
T ss_dssp -STTCCEEEEEECGGGGGCHHHH--------HHHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred -CCCCCEEEEEEchhhhccccch--------hhhh-----------hcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCC
Confidence 3589999999999997542100 0000 0012467788888888754444899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAKV 312 (592)
Q Consensus 299 VeeLf~~Li~~i~~ 312 (592)
|+++|+.|++.+..
T Consensus 187 i~el~~~l~~~i~~ 200 (207)
T 2fv8_A 187 VREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998854
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=9.3e-26 Score=214.00 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=130.1
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-----------Ccee-eeEEEEE-eeCCeEEEEEEEeCCCCCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK-----------RTIE-EMHHEDF-SMNGVHLKLDILDTSGEQSGK 124 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~-----------~Tt~-d~~~~~v-~vdg~~v~L~I~DT~G~~~~~ 124 (592)
.....+||+|+|++|||||||++.+. +.+...+. +|++ ++....+ .+++..+.++||||+|+
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---- 84 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ---- 84 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC----
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh----
Confidence 34678999999999999999996554 55554433 3443 3333333 56788899999999999
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC-----
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID----- 199 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs----- 199 (592)
++|..++..+++++|++|+|||++
T Consensus 85 ---------------------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~~~ 113 (198)
T 3t1o_A 85 ---------------------------------------------------VFYNASRKLILRGVDGIVFVADSAPNRLR 113 (198)
T ss_dssp ---------------------------------------------------CSCSHHHHHHTTTCCEEEEEEECCGGGHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHhcCCEEEEEEECCcchhh
Confidence 788889999999999999999999
Q ss_pred -CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH
Q psy1524 200 -DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES 278 (592)
Q Consensus 200 -d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~ 278 (592)
+..+|+.+..|+..+.. ...++|+|||+||+|+.. .++.+++..
T Consensus 114 ~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~---------------------------------~~~~~~~~~ 158 (198)
T 3t1o_A 114 ANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD---------------------------------ALPVEMVRA 158 (198)
T ss_dssp HHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT---------------------------------CCCHHHHHH
T ss_pred HhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc---------------------------------ccCHHHHHH
Confidence 55667777777776632 346899999999999864 256778888
Q ss_pred HHhhcCCC-eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 279 VVQVDWEN-GFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 279 la~~~~~~-~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
+++ ..+. .+++|||++|.||+++|+++++.+..+.
T Consensus 159 ~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 159 VVD-PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHC-TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHH-hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 877 4455 8999999999999999999999987654
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.3e-27 Score=228.36 Aligned_cols=166 Identities=31% Similarity=0.494 Sum_probs=131.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..++.+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+.+.||||+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 92 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ---------------- 92 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC----------------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc----------------
Confidence 346789999999999999999999999988877777776 677788889999999999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus 93 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 93 ---------------------------------------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133 (199)
T ss_dssp ---------------------------------------TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred ---------------------------------------HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45555555678999999999999999999999999998866
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...++|+|||+||+|+... +.++.+++..++. ..++++++|||++|
T Consensus 134 ~-~~~~~p~ilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 134 Y-ASENVNKLLVGNKCDLTTK-------------------------------KVVDYTTAKEFAD-SLGIPFLETSAKNA 180 (199)
T ss_dssp C-C-CCSEEEEC-CCSSCC---------------------------------CCCCSCC-CHHHH-TTTCCBCCCCC---
T ss_pred h-ccCCCCEEEEEECccCCcc-------------------------------ccCCHHHHHHHHH-HcCCeEEEEECCCC
Confidence 5 3457999999999999765 4455555566665 45678999999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.|++.+.
T Consensus 181 ~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988763
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.5e-25 Score=207.39 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=124.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+. .+.+|++ .....+.+++ +.++||||+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~------------------- 70 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQ------------------- 70 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC--------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 34689999999999999999999988887 5667766 2234555666 67777999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus 71 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 114 (187)
T 1zj6_A 71 ------------------------------------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114 (187)
T ss_dssp ---------------------------------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG
T ss_pred ------------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh
Confidence 66777788889999999999999999999999999988876533
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt 295 (592)
..+.|+|+|+||+|+... ...++....... .....+++|||++
T Consensus 115 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVKEC---------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred hCCCeEEEEEECCCCcCC---------------------------------CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 468999999999999753 122333332221 2345799999999
Q ss_pred CccHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQA 310 (592)
Q Consensus 296 g~gVeeLf~~Li~~i 310 (592)
|.||+++|+++++.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRL 176 (187)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999999987
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.92 E-value=5.3e-25 Score=212.56 Aligned_cols=159 Identities=14% Similarity=0.257 Sum_probs=120.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+. .+.+|++.. ...+.+++ +.+++|||+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~------------------- 79 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGH------------------- 79 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC--------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCc-------------------
Confidence 34589999999999999999999988774 456666533 35566777 67788999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
++++.++..+++.+|++|+|||++++.+|+.+..|+..+.+...
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~ 123 (198)
T 1f6b_A 80 ------------------------------------IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET 123 (198)
T ss_dssp ---------------------------------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc
Confidence 66667777789999999999999999999999999998876544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----------------c
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----------------D 283 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----------------~ 283 (592)
..++|+|+|+||+|+... ++.+++..++.. .
T Consensus 124 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 124 IANVPILILGNKIDRPEA---------------------------------ISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp GTTSCEEEEEECTTSTTC---------------------------------CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred cCCCcEEEEEECCCcccc---------------------------------CCHHHHHHHhCcccccccccccccccccC
Confidence 468999999999999642 334444444331 1
Q ss_pred CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 284 WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 284 ~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
....+++|||++|.||+++|+++++.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999997643
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=1.1e-24 Score=208.69 Aligned_cols=158 Identities=18% Similarity=0.319 Sum_probs=124.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+. .+.+|+.. ....+.+++ +.+++|||+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~------------------- 77 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGH------------------- 77 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCS-------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCC-------------------
Confidence 34579999999999999999999988875 45666654 356677777 67778999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.++.++..+++.+|++|+|||++++.||+.+..|+..+.....
T Consensus 78 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 78 ------------------------------------IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 121 (190)
T ss_dssp ------------------------------------GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh
Confidence 56666677788999999999999999999999999988876544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----------cCCCeE
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----------DWENGF 288 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----------~~~~~~ 288 (592)
..++|+++|+||+|+... ++.+++...... ....++
T Consensus 122 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNA---------------------------------VSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp GTTCCEEEEEECTTSTTC---------------------------------CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCCEEEEEECCCCcCC---------------------------------CCHHHHHHHhCCccccccccccccceEEE
Confidence 468999999999999642 223333333221 245679
Q ss_pred EEcccCCCccHHHHHHHHHHH
Q psy1524 289 VEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 289 ~EvSAktg~gVeeLf~~Li~~ 309 (592)
++|||++|.||+++|+++++.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999998753
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.92 E-value=1.7e-25 Score=218.67 Aligned_cols=166 Identities=23% Similarity=0.375 Sum_probs=138.7
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
......+||+|+|++|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.||||+|+
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------- 74 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--------------- 74 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG---------------
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh---------------
Confidence 3456789999999999999999999888888777778886 666777788999999999999998
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
+.+..+...+++++|++|+|||++++.+|..+..|+..+.
T Consensus 75 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 114 (221)
T 3gj0_A 75 ----------------------------------------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 114 (221)
T ss_dssp ----------------------------------------GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ----------------------------------------HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 6677777888999999999999999999999999999998
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
.. ..++|+|+|+||+|+.+.. +. .++..+++ ..+..|++|||++
T Consensus 115 ~~--~~~~p~ilv~nK~Dl~~~~--------------------------------~~-~~~~~~~~-~~~~~~~~~Sa~~ 158 (221)
T 3gj0_A 115 RV--CENIPIVLCGNKVDIKDRK--------------------------------VK-AKSIVFHR-KKNLQYYDISAKS 158 (221)
T ss_dssp HH--STTCCEEEEEECTTSSSCS--------------------------------SC-GGGCCHHH-HHTCEEEECBGGG
T ss_pred Hh--CCCCCEEEEEECCcccccc--------------------------------cc-HHHHHHHH-HcCCEEEEEeCCC
Confidence 75 3589999999999997541 11 12223333 3457899999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+.+++.+...
T Consensus 159 ~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TBTTTHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999998554
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=2.2e-24 Score=199.13 Aligned_cols=157 Identities=14% Similarity=0.194 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
+||+|+|++|||||||+++|+++.+.. +.+|++ .....+..++ +.++||||+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~---------------------- 54 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQ---------------------- 54 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCC----------------------
Confidence 589999999999999999999888764 566766 3333444444 67778999999
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA 222 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~ 222 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+.......+
T Consensus 55 ---------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 101 (164)
T 1r8s_A 55 ---------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD 101 (164)
T ss_dssp ---------------------------------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred ---------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcC
Confidence 77888888999999999999999999999999999888876444568
Q ss_pred CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCCCcc
Q psy1524 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKDNTN 298 (592)
Q Consensus 223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAktg~g 298 (592)
+|+++|+||+|+.... ..++... +.. .....++++|||++|.|
T Consensus 102 ~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 102 AVLLVFANKQDLPNAM---------------------------------NAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp CEEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CeEEEEEECcCCcCCC---------------------------------CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999999996541 1111111 111 02345699999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+++.+.
T Consensus 149 i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 149 LYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=1.1e-24 Score=207.58 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=127.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+||+|+|++|||||||+++|+++.+...+.+|++..+. .+..+ .+.+.||||+|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~------------------ 77 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQ------------------ 77 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCS------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCC------------------
Confidence 356799999999999999999999999998888888874433 23334 467778999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..++..++..+|++|+|||++++.+|+.+..|+..+....
T Consensus 78 -------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~ 120 (188)
T 1zd9_A 78 -------------------------------------PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120 (188)
T ss_dssp -------------------------------------HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred -------------------------------------HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc
Confidence 7788888889999999999999999999999999988887643
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HHHh---hcCCCeEEEcccC
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQ---VDWENGFVEASAK 294 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~la~---~~~~~~~~EvSAk 294 (592)
...++|+|+|+||+|+.... ..++.. .+.. ......+++|||+
T Consensus 121 ~~~~~piilv~NK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 121 QLQGIPVLVLGNKRDLPGAL---------------------------------DEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp GGTTCCEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred ccCCCCEEEEEECCCCccCC---------------------------------CHHHHHHHhChhhhccCCeeEEEEECC
Confidence 34689999999999997541 111111 1111 1234579999999
Q ss_pred CCccHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQA 310 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i 310 (592)
+|.||+++|+.|++.+
T Consensus 168 ~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHS 183 (188)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999999876
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=1.8e-24 Score=205.55 Aligned_cols=161 Identities=18% Similarity=0.290 Sum_probs=124.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+. .+.+|++ .....+.+++ +.+++|||+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g-~~~~~~~~~~--~~l~i~Dt~G~------------------- 70 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG-FNIKSVQSQG--FKLNVWDIGGQ------------------- 70 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT-EEEEEEEETT--EEEEEEECSSC-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC-eEEEEEEECC--EEEEEEECCCC-------------------
Confidence 45699999999999999999999987553 4555655 3344566665 67778999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.+..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus 71 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 114 (181)
T 1fzq_A 71 ------------------------------------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 114 (181)
T ss_dssp ------------------------------------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG
T ss_pred ------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh
Confidence 77888889999999999999999999999999998887765433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+... + ..++...... ......+++|||++
T Consensus 115 ~~~~piilv~NK~Dl~~~-------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 115 LSCVPVLIFANKQDLLTA-------------------------------A--PASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp GTTCCEEEEEECTTSTTC-------------------------------C--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCCEEEEEECcCcccC-------------------------------C--CHHHHHHHhCchhccCCceEEEEccCCC
Confidence 467999999999999754 1 1122221111 12345799999999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~ 312 (592)
|.||+++|+++++.+..
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987743
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=1.7e-24 Score=200.86 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=125.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+.. +.+|++ .....+.+++ +.+.||||+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~------------------- 61 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG-FNVETVTYKN--LKFQVWDLGGL------------------- 61 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEEETT--EEEEEEEECCC-------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 456999999999999999999999888864 556665 3445566664 66777999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.+..++..+++.+|++|+|||++++.+|..+..|+..+.....
T Consensus 62 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 62 ------------------------------------TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 105 (171)
T ss_dssp ------------------------------------GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence 66777777789999999999999999999999998888766433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HH----HhhcCCCeEEEcccC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SV----VQVDWENGFVEASAK 294 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~l----a~~~~~~~~~EvSAk 294 (592)
..++|+++|+||+|+.... ..++.. .+ +. ....++++|||+
T Consensus 106 ~~~~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 151 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAM---------------------------------TSSEMANSLGLPALK-DRKWQIFKTSAT 151 (171)
T ss_dssp GTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHHTGGGCT-TSCEEEEECCTT
T ss_pred hCCCEEEEEEECCCCcCCC---------------------------------CHHHHHHHhCchhcc-CCceEEEECcCC
Confidence 4689999999999997541 111111 11 11 234579999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAKV 312 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~~ 312 (592)
+|.||+++|+.+++.+..
T Consensus 152 ~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998854
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=1.2e-24 Score=206.01 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=123.0
Q ss_pred CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
......+||+|+|++|||||||+++|+++.+ ..+.+|++.. ...+.+++ +.+.||||+|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~---------------- 75 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQ---------------- 75 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSS----------------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCC----------------
Confidence 3445679999999999999999999999888 4566666632 24455666 67777999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+..
T Consensus 76 ---------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~ 116 (181)
T 2h17_A 76 ---------------------------------------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116 (181)
T ss_dssp ---------------------------------------GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHT
T ss_pred ---------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 66677777889999999999999999999999999888876
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcc
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEAS 292 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvS 292 (592)
.....++|+|+|+||+|+... ...++...... ......+++||
T Consensus 117 ~~~~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 117 HEDLRKAGLLIFANKQDVKEC---------------------------------MTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp CGGGTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred ChhhCCCeEEEEEECCCcccC---------------------------------CCHHHHHHHhCcccccCCceEEEEcc
Confidence 433468999999999999753 12222222221 12345799999
Q ss_pred cCCCccHHHHHHHHHHH
Q psy1524 293 AKDNTNITQVFKELLVQ 309 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~ 309 (592)
|++|.||+++|+.|++.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999998764
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=4.3e-24 Score=202.11 Aligned_cols=162 Identities=15% Similarity=0.266 Sum_probs=127.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++. ...+.+|++ .....+.+++ +.++||||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~------------------- 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHRG--FKLNIWDVGGQ------------------- 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEETT--EEEEEEEECCS-------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 456999999999999999999999887 666777776 3345556665 66777999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..+++++|++|+|||++++.+|+.+..|+..+.....
T Consensus 73 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (186)
T 1ksh_A 73 ------------------------------------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116 (186)
T ss_dssp ------------------------------------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh
Confidence 66777777789999999999999999999999999888876544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+... ...++...... .....++++|||++
T Consensus 117 ~~~~piilv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 117 LAGATLLIFANKQDLPGA---------------------------------LSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCcEEEEEeCccCCCC---------------------------------CCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 468999999999999754 11222222211 12355799999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+.+++.+.++
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988544
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=204.21 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=128.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+++|+++. +...+.+|++ .....+.+++ +.+.||||+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~----------------- 77 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQ----------------- 77 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCS-----------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCC-----------------
Confidence 3567999999999999999999999887 6666777775 4556667776 56777999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+...
T Consensus 78 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 119 (190)
T 2h57_A 78 --------------------------------------GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH 119 (190)
T ss_dssp --------------------------------------TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHS
T ss_pred --------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 667777778899999999999999999999999999888765
Q ss_pred hcC--CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEc
Q psy1524 218 KAS--TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEA 291 (592)
Q Consensus 218 ~~~--~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~Ev 291 (592)
... .++|+|+|+||+|+... +..++....+.. .....+++|
T Consensus 120 ~~~~~~~~piilv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 2h57_A 120 PDIKHRRIPILFFANKMDLRDA---------------------------------VTSVKVSQLLCLENIKDKPWHICAS 166 (190)
T ss_dssp TTTTTSCCCEEEEEECTTSTTC---------------------------------CCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred hhhccCCCeEEEEEeCcCcccC---------------------------------CCHHHHHHHhChhhccCCceEEEEc
Confidence 333 58999999999999643 233444444321 135679999
Q ss_pred ccCCCccHHHHHHHHHHHHH
Q psy1524 292 SAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~~i~ 311 (592)
||++|.||+++|+.|.+.+.
T Consensus 167 Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 167 DAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTTTTBTHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998773
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=8.5e-24 Score=203.57 Aligned_cols=167 Identities=31% Similarity=0.470 Sum_probs=140.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
++.+||+|+|++|||||||+++|++..+...+.+|++ +.....+.+++..+.+.||||+|+
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~------------------ 64 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------ 64 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4679999999999999999999999998877888876 677788889999999999999998
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+++..+...++..+|++++|||+++..+|+++..|+..+...
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~- 106 (199)
T 2f9l_A 65 -------------------------------------ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH- 106 (199)
T ss_dssp -------------------------------------GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred -------------------------------------hhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence 566666677888999999999999999999998888877654
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...+.|+++|+||+|+.+. +.++.+++..++. ...+.+++|||+++.|
T Consensus 107 ~~~~~~i~~v~nK~Dl~~~-------------------------------~~~~~~~a~~l~~-~~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 107 ADSNIVIMLVGNKSDLRHL-------------------------------RAVPTDEARAFAE-KNNLSFIETSALDSTN 154 (199)
T ss_dssp SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred cCCCCeEEEEEECcccccc-------------------------------cCcCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence 3457899999999999765 4566777888876 4567899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1524 299 ITQVFKELLVQAKVKY 314 (592)
Q Consensus 299 VeeLf~~Li~~i~~~~ 314 (592)
++++|+.+.+.+....
T Consensus 155 i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 155 VEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986543
No 95
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.1e-26 Score=222.15 Aligned_cols=175 Identities=24% Similarity=0.438 Sum_probs=140.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 88 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------- 88 (204)
Confidence 4569999999999999999999999999888889998877777888888899999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
+++..+...+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus 89 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~- 131 (204)
T 3th5_A 89 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH- 131 (204)
Confidence 677778888899999999999999999999997 677777654
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+.+...... .+. ....+.++.+++..+++.....++++|||++|.|
T Consensus 132 -~~~~piilv~NK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g 191 (204)
T 3th5_A 132 -CPNTPIILVGTKLDLRDDKDTIE--------KLK-----------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 191 (204)
Confidence 24789999999999976421100 000 0011356667777777643333799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+++.+
T Consensus 192 i~~l~~~l~~~i 203 (204)
T 3th5_A 192 LKTVFDEAIRAV 203 (204)
Confidence 999999998765
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=5e-24 Score=219.74 Aligned_cols=176 Identities=23% Similarity=0.410 Sum_probs=145.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL------------------- 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC-------------------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 3458999999999999999999999999989999999888888889999999999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK 218 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~ 218 (592)
+.+..+...++..+|++|+|||++++.+|+.+. .|+..+...
T Consensus 214 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 256 (332)
T 2wkq_A 214 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH- 256 (332)
T ss_dssp ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------------------------------hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh-
Confidence 666777777899999999999999999999997 687777764
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
..++|+|+|+||+|+........ .+ .....+.++.+++..+++.....+|++|||++|.|
T Consensus 257 -~~~~p~ilv~nK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 316 (332)
T 2wkq_A 257 -CPNTPIILVGTKLDLRDDKDTIE--------KL-----------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316 (332)
T ss_dssp -CTTSCEEEEEECHHHHTCHHHHH--------HH-----------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred -CCCCcEEEEEEchhcccccchhh--------hc-----------cccccccccHHHHHHHHHHcCCcEEEEecCCCCcC
Confidence 34899999999999975411000 00 00112678888999988854444899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+++.+.
T Consensus 317 i~~l~~~l~~~~~ 329 (332)
T 2wkq_A 317 LKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=1e-23 Score=202.28 Aligned_cols=159 Identities=13% Similarity=0.207 Sum_probs=120.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+.+.+.. +.+|++ .....+..++ +.++||||+|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~------------------- 83 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQ------------------- 83 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC---------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCC-------------------
Confidence 456999999999999999999999888763 455555 3344455555 67778999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus 84 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~ 127 (192)
T 2b6h_A 84 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127 (192)
T ss_dssp ---------------------------------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc
Confidence 67777888899999999999999999999999999888876544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt 295 (592)
..++|+|+|+||+|+... ...++... +.. .....++++|||++
T Consensus 128 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 128 LRDAVLLVFANKQDMPNA---------------------------------MPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred cCCCeEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 468999999999999653 11111111 111 02345699999999
Q ss_pred CccHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQA 310 (592)
Q Consensus 296 g~gVeeLf~~Li~~i 310 (592)
|.||+++|+.+++.+
T Consensus 175 g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 175 GTGLYDGLDWLSHEL 189 (192)
T ss_dssp TBTHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999999876
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.3e-24 Score=200.99 Aligned_cols=162 Identities=19% Similarity=0.262 Sum_probs=122.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+ ..+.+|++ .....+.+++ +.+.+|||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~------------------- 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LKLNVWDLGGQ------------------- 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EEEEEEEEC---------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence 4569999999999999999999998877 45566665 2334556665 66777999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus 73 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (183)
T 1moz_A 73 ------------------------------------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116 (183)
T ss_dssp --------------------------------------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST
T ss_pred ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh
Confidence 44555566678899999999999999999999999888766433
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+.+. ...++....... ....++++|||++
T Consensus 117 ~~~~piilv~nK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 117 LQDAALLVFANKQDQPGA---------------------------------LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp TSSCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred hCCCeEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 568999999999999753 122222222211 1234799999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+++++.+..+
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988543
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.90 E-value=1.1e-24 Score=207.18 Aligned_cols=162 Identities=15% Similarity=0.304 Sum_probs=117.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEee---CCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSM---NGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~v---dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
.+||+|+|++|||||||+++|++. .+...+.+|++ ++....+.+ ++..+.+.+|||+|+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------- 66 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--------------- 66 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC---------------
Confidence 479999999999999999999984 56666778876 554444443 345778899999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIRLIRDHI 214 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~~~l~~L 214 (592)
++|..+...+++++|++++|||++++ .+|+.+..|+..+
T Consensus 67 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~ 106 (184)
T 2zej_A 67 ----------------------------------------EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106 (184)
T ss_dssp ----------------------------------------HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHH
T ss_pred ----------------------------------------HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHH
Confidence 77777888889999999999999998 5899999999988
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC---hHHHHHHHhhcCCCe----
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP---YDTTESVVQVDWENG---- 287 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs---~ee~~~la~~~~~~~---- 287 (592)
... ..++|+|+|+||+|+.+. +.++ .+.+..+++ ..+++
T Consensus 107 ~~~--~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~ 152 (184)
T 2zej_A 107 KAR--ASSSPVILVGTHLDVSDE-------------------------------KQRKACMSKITKELLN-KRGFPAIRD 152 (184)
T ss_dssp HHH--CTTCEEEEEEECGGGCCH-------------------------------HHHHHHHHHHHHHTTT-CTTSCEEEE
T ss_pred Hhh--CCCCcEEEEEECCCcccc-------------------------------hhhHHHHHHHHHHHHH-hcCCcchhh
Confidence 764 357899999999999754 1111 233444544 33444
Q ss_pred EEEcccCCCc-cHHHHHHHHHHHHHH
Q psy1524 288 FVEASAKDNT-NITQVFKELLVQAKV 312 (592)
Q Consensus 288 ~~EvSAktg~-gVeeLf~~Li~~i~~ 312 (592)
|++|||++|. +++++++.+++.+..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 9999999996 999999999988754
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=7.3e-24 Score=205.52 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=120.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCe-EEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGV-HLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~-~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...+||+|+|++|||||||+++|+++.+...+.+++.+... +.+++. .+.++||||+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~------------------ 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGH------------------ 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCC------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCC------------------
Confidence 45689999999999999999999999998887766555443 566644 578888999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFE 216 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~ 216 (592)
++|.. ++..+++.+|++|+|||+++.. ++..+..++..+..
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 107 (214)
T 2fh5_B 65 -------------------------------------ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 107 (214)
T ss_dssp -------------------------------------HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence 77777 7888899999999999999853 45555554444332
Q ss_pred h--hcCCCCCEEEEEeCCCCcccccccccCCCCcccccC---CCC-CccccccCCCCCCCCChHHHHHHHhhcC--CCeE
Q psy1524 217 T--KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS---GLP-DSVCAHQISGTPDQVPYDTTESVVQVDW--ENGF 288 (592)
Q Consensus 217 ~--~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~---~~~-~~~~~~~~~~~~r~Vs~ee~~~la~~~~--~~~~ 288 (592)
. ....++|++||+||+|+...... ......+...+. ..+ ...+........+.+..+++..++.... .+.|
T Consensus 108 ~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (214)
T 2fh5_B 108 DSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF 186 (214)
T ss_dssp HHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEE
T ss_pred hhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEE
Confidence 2 12457899999999999765210 000000000000 000 0000011111112233333334433233 6789
Q ss_pred EEcccCCC------ccHHHHHHHHHHH
Q psy1524 289 VEASAKDN------TNITQVFKELLVQ 309 (592)
Q Consensus 289 ~EvSAktg------~gVeeLf~~Li~~ 309 (592)
+||||++| .||+++|++|.+.
T Consensus 187 ~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 187 LECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp EECBCC-------CCBCHHHHHHHHHH
T ss_pred EEeeccCCCccccccChHHHHHHHHHh
Confidence 99999999 9999999999875
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=5.4e-23 Score=197.39 Aligned_cols=165 Identities=31% Similarity=0.469 Sum_probs=140.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
..+..++|+|+|++|||||||+++|++..+...+.+|++ ++....+.+++..+.+++|||+|+
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~---------------- 88 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL---------------- 88 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSC----------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCC----------------
Confidence 346679999999999999999999999998888888887 667788889999999999999998
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
+++..+...++..++++++|||+++..+|+++..|+..+..
T Consensus 89 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 129 (191)
T 1oix_A 89 ---------------------------------------ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 129 (191)
T ss_dssp ---------------------------------------CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 55566667778899999999999999999999888887765
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ...+.|+++|+||+|+.+. +.+..+++..++. ...+.++++||+++
T Consensus 130 ~-~~~~~~i~~v~nK~Dl~~~-------------------------------~~~~~~~a~~l~~-~~~~~~ld~Sald~ 176 (191)
T 1oix_A 130 H-ADSNIVIMLVGNKSDLRHL-------------------------------RAVPTDEARAFAE-KNGLSFIETSALDS 176 (191)
T ss_dssp H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence 4 3457899999999999765 4556778888877 45678999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQA 310 (592)
Q Consensus 297 ~gVeeLf~~Li~~i 310 (592)
.|++++|+.+.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=4.9e-24 Score=204.75 Aligned_cols=170 Identities=17% Similarity=0.281 Sum_probs=117.5
Q ss_pred CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEE--EEee-CCeEEEEEEEeCCCCCCCCccccccc
Q psy1524 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHE--DFSM-NGVHLKLDILDTSGEQSGKGLKCGAV 131 (592)
Q Consensus 56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~--~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~ 131 (592)
.....+.+||+|+|++|||||||++++.+. +... +|+. +.... ...+ ++..+.++||||+|+
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------- 79 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ----------- 79 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS-----------
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCC-----------
Confidence 345567899999999999999999988764 3322 2222 22212 2223 366788899999999
Q ss_pred ccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH---HHhhhcCCcEEEEEeCCCc--CCHHH
Q psy1524 132 LWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR---ALSISSADAFILVYAIDDP--NSFEE 206 (592)
Q Consensus 132 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~---~~~~~~AD~iIlVyDvsd~--~Sfe~ 206 (592)
++|..+. ..+++++|++|+|||+++. +++..
T Consensus 80 --------------------------------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 115 (196)
T 3llu_A 80 --------------------------------------------MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTR 115 (196)
T ss_dssp --------------------------------------------CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHH
T ss_pred --------------------------------------------HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHH
Confidence 6666665 7889999999999999997 44455
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---c
Q psy1524 207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---D 283 (592)
Q Consensus 207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~ 283 (592)
+..|+..+.. ...++|+|||+||+|+..+.... ...+.++.+++..+++. .
T Consensus 116 ~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~------------------------~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 116 LHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKI------------------------ETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHH------------------------HHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHh--cCCCCcEEEEEeccccCchhhhh------------------------HHHhHHHHHHHHHHHHhhhhc
Confidence 5555555433 34689999999999987531100 00134555666667663 3
Q ss_pred CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 284 WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 284 ~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.++.|++|||++ .||+++|+.+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 467899999999 99999999999865
No 103
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=1.8e-23 Score=198.68 Aligned_cols=162 Identities=17% Similarity=0.247 Sum_probs=122.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+.+.+.. +.+|++ .....+.+++ +.+++|||+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~------------------- 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQ------------------- 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCS-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCC-------------------
Confidence 356899999999999999999999887764 556665 3334455665 66777999998
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+++..++..+++++|++|+|||++++.+|+.+..|+..+.....
T Consensus 77 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 120 (189)
T 2x77_A 77 ------------------------------------TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE 120 (189)
T ss_dssp ------------------------------------SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST
T ss_pred ------------------------------------HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence 44444445568899999999999999999999998888766544
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt 295 (592)
..++|+++|+||+|+.... ..++... +.. .....++++|||++
T Consensus 121 ~~~~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 121 LRKSLLLIFANKQDLPDAA---------------------------------SEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCeEEEEEECCCCcCCC---------------------------------CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 4689999999999997541 1111111 110 12345799999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy1524 296 NTNITQVFKELLVQAKVK 313 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~ 313 (592)
|.||+++|+.+++.+...
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999988543
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.3e-24 Score=219.16 Aligned_cols=182 Identities=20% Similarity=0.264 Sum_probs=127.1
Q ss_pred CCCcceEEEEEcCC---------CCcHHHHHHHHHc---CCCCCCccCce-e-eeEEEEE--------------eeCCeE
Q psy1524 58 GHDTRHKVVVMGGP---------KVGKSSIIHRFLY---NTFSPKYKRTI-E-EMHHEDF--------------SMNGVH 109 (592)
Q Consensus 58 ~~~~~iKIvIvG~~---------nVGKSSLInrL~~---~~f~~~~~~Tt-~-d~~~~~v--------------~vdg~~ 109 (592)
..+..+||+|+|++ |||||||+++|++ +.+...+.+|+ + ++..+.+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34677999999999 9999999999998 66777777776 2 3322222 246777
Q ss_pred EEEEEEe------CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH
Q psy1524 110 LKLDILD------TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183 (592)
Q Consensus 110 v~L~I~D------T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 183 (592)
+.++||| |+|.+..... .+.....++++++|..++.
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~--------------------------------------~~~~~~~~~g~e~~~~~~~ 136 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRST--------------------------------------ALQPYIKRAAATKLASAEK 136 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGG--------------------------------------GCCCHHHHHTCSEEECTTC
T ss_pred EEEEEEEcccccccccccccccc--------------------------------------ccccccccchhhhhhhhhh
Confidence 8888898 4444110000 0001112345566666666
Q ss_pred Hhhh---------------------cCCcEEEEEeCCCc--CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccc
Q psy1524 184 LSIS---------------------SADAFILVYAIDDP--NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240 (592)
Q Consensus 184 ~~~~---------------------~AD~iIlVyDvsd~--~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~ 240 (592)
.++. +||++|+|||++++ .||+.+..|+..+.......++|+|||+||+|+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--- 213 (255)
T 3c5h_A 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--- 213 (255)
T ss_dssp BCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---
T ss_pred hhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---
Confidence 6666 89999999999998 999999999998876533467999999999999654
Q ss_pred cccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
+.+ +++..++.....+.+++|||++|.||+++|+.|++.+
T Consensus 214 ----------------------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 214 ----------------------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ----------------------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 222 4666676644577899999999999999999999876
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=1.7e-22 Score=188.72 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=111.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..++|+|+|++|||||||+++|++..+.....+++ .+.....+.+++ ..+++|||+|+.....
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~-------------- 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTA-------------- 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSS--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCC--------------
Confidence 35899999999999999999999876654334443 355556666776 4677799999821000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
......+...++. ++|++++|+|+++. +....|+..+.+
T Consensus 66 -----------------------------------~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~- 106 (165)
T 2wji_A 66 -----------------------------------NSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME- 106 (165)
T ss_dssp -----------------------------------SSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH-
T ss_pred -----------------------------------cchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh-
Confidence 0011234455554 89999999999874 455557766654
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.++|+|+|+||+|+... +.+.. ++..+++ ..+.++++|||++|.
T Consensus 107 ---~~~p~ilv~nK~Dl~~~-------------------------------~~~~~-~~~~~~~-~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 107 ---MGANLLLALNKMDLAKS-------------------------------LGIEI-DVDKLEK-ILGVKVVPLSAAKKM 150 (165)
T ss_dssp ---TTCCEEEEEECHHHHHH-------------------------------TTCCC-CHHHHHH-HHTSCEEECBGGGTB
T ss_pred ---cCCCEEEEEEchHhccc-------------------------------cChhh-HHHHHHH-HhCCCEEEEEcCCCC
Confidence 36899999999998754 22332 2455555 345789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
||+++|+.+++.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=3.5e-22 Score=186.72 Aligned_cols=159 Identities=24% Similarity=0.372 Sum_probs=113.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....++|+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+ .||||+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~G~----------------- 65 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKI--TFLDTPGH----------------- 65 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEE--EESCCCSS-----------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceE--EEEECCCC-----------------
Confidence 35678999999999999999999999988876666554 55555667777654 56999998
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
++|..++..++..+|++|+|||+++......... +..+
T Consensus 66 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-l~~~--- 103 (178)
T 2lkc_A 66 --------------------------------------EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA-INHA--- 103 (178)
T ss_dssp --------------------------------------SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH-HHHH---
T ss_pred --------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHH---
Confidence 3344444455788999999999998654443322 2222
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cC--CCeEE
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DW--ENGFV 289 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~--~~~~~ 289 (592)
...++|+++|+||+|+.... .++....... .+ ..+++
T Consensus 104 -~~~~~p~ilv~nK~Dl~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 104 -KAANVPIIVAINKMDKPEAN----------------------------------PDRVMQELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp -GGGSCCEEEEEETTTSSCSC----------------------------------HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred -HhCCCCEEEEEECccCCcCC----------------------------------HHHHHHHHHhcCcChhHcCCcccEE
Confidence 23478999999999997531 1111111110 11 25799
Q ss_pred EcccCCCccHHHHHHHHHHHHHHh
Q psy1524 290 EASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
+|||++|.||+++|+.|++.+...
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999988554
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=3.1e-22 Score=188.88 Aligned_cols=160 Identities=20% Similarity=0.307 Sum_probs=115.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..+||+|+|++|||||||+|+|++..+ ...+.+++.+.....+.+++.. +.+|||+|+.....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~------------- 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASD------------- 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSS-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchh-------------
Confidence 347999999999999999999998754 4556667778888888888865 56799999821000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
..+. ..+.. ...+++.+|++|+|||++++.+++. ..|+..+.+.
T Consensus 68 ~~~~---------------------------------~~~~~-~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~- 111 (172)
T 2gj8_A 68 EVER---------------------------------IGIER-AWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR- 111 (172)
T ss_dssp HHHH---------------------------------HHHHH-HHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-
T ss_pred HHHH---------------------------------HHHHH-HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-
Confidence 0000 00111 1235789999999999999998874 4677777664
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...++|+|+|+||+|+..... .+++ ....++++|||++|.|
T Consensus 112 ~~~~~p~ilv~NK~Dl~~~~~--------------------------------------~~~~-~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 112 LPAKLPITVVRNKADITGETL--------------------------------------GMSE-VNGHALIRLSARTGEG 152 (172)
T ss_dssp SCTTCCEEEEEECHHHHCCCC--------------------------------------EEEE-ETTEEEEECCTTTCTT
T ss_pred cccCCCEEEEEECccCCcchh--------------------------------------hhhh-ccCCceEEEeCCCCCC
Confidence 345799999999999864300 0111 2345799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.87 E-value=4.9e-22 Score=206.01 Aligned_cols=164 Identities=17% Similarity=0.289 Sum_probs=126.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
..+||+|+|++|||||||+++|+++ .+.. .+.+|++ .....+.+++ .+.++||||+|+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~-~~~~~~~~~~-~~~l~i~Dt~G~----------------- 62 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID-VEHSHLRFLG-NMTLNLWDCGGQ----------------- 62 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS-EEEEEEEETT-TEEEEEEEECCS-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc-eEEEEEEeCC-ceEEEEEECCCc-----------------
Confidence 3589999999999999999999987 3333 3444444 3334455544 578889999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcch-----hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF-----PAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~ 212 (592)
+.| ..+...+++++|++|+|||++++.+|+++..|..
T Consensus 63 --------------------------------------~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~ 104 (307)
T 3r7w_A 63 --------------------------------------DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAK 104 (307)
T ss_dssp --------------------------------------HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHH
T ss_pred --------------------------------------HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHH
Confidence 444 5677888999999999999999999999988766
Q ss_pred HHHHhh-cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCC----CChHHHHHHHhhcC--C
Q psy1524 213 HIFETK-ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQ----VPYDTTESVVQVDW--E 285 (592)
Q Consensus 213 ~L~~~~-~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~----Vs~ee~~~la~~~~--~ 285 (592)
.+.... ..+++|+++|+||+|+...+. +. +..+++..+++... .
T Consensus 105 ~l~~l~~~~~~~piilv~NK~Dl~~~~~-----------------------------r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 105 ALKQLRKYSPDAKIFVLLHKMDLVQLDK-----------------------------REELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHHHHHHHCTTCEEEEEEECGGGSCHHH-----------------------------HHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHhCCCCeEEEEEecccccchhh-----------------------------hhHHHHHHHHHHHHHHHHcCCCC
Confidence 665532 246799999999999986311 22 45567777877443 3
Q ss_pred CeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 286 NGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 286 ~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
+++++|||++ .|+.++|..+++.+.
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 7899999999 899999999887653
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=3.2e-21 Score=189.90 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=115.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+|+|+++.+. ..+..++.+.....+..++ +.+.||||+|+.+...
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~------------ 91 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAF------------ 91 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCG------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCccc------------
Confidence 356799999999999999999999988774 2333444455555555555 5667799999921100
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcc----hhHHHHHhhhcCCcEEEEEeCCCcCCHHH--HHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE----FPAMRALSISSADAFILVYAIDDPNSFEE--IRLIR 211 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~--l~~~l 211 (592)
.+. +..+. .++..+|++|+|||++++.+|.. ...|+
T Consensus 92 -------------------------------------~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 133 (228)
T 2qu8_A 92 -------------------------------------ENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLF 133 (228)
T ss_dssp -------------------------------------GGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHH
T ss_pred -------------------------------------chhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHH
Confidence 011 23332 34778999999999999988752 23344
Q ss_pred HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH---HHHHHHhhcCC--C
Q psy1524 212 DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD---TTESVVQVDWE--N 286 (592)
Q Consensus 212 ~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e---e~~~la~~~~~--~ 286 (592)
..+... ..++|+|+|+||+|+... +.+..+ .+..++. ..+ .
T Consensus 134 ~~l~~~--~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~ 179 (228)
T 2qu8_A 134 YSIKSV--FSNKSIVIGFNKIDKCNM-------------------------------DSLSIDNKLLIKQILD-NVKNPI 179 (228)
T ss_dssp HHHHTC--C-CCCEEEEEECGGGCC---------------------------------CCCHHHHHHHHHHHH-HCCSCE
T ss_pred HHHHHh--hcCCcEEEEEeCcccCCc-------------------------------hhhHHHHHHHHHHHHH-hcCCCc
Confidence 444332 247899999999999765 344443 3444444 233 6
Q ss_pred eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 287 GFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 287 ~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
.+++|||++|.||+++|+.|++.+....
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999986554
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=205.33 Aligned_cols=160 Identities=14% Similarity=0.199 Sum_probs=120.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
...+||+|+|++|||||||+++|+++.+...+ +|+. .....+..++ +.++||||+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~-~~~~~~~~~~--~~l~i~Dt~G~------------------- 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-FNVETVEYKN--ISFTVWDVGGQ------------------- 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT-EEEEEEEETT--EEEEEEECC---------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc-eEEEEEecCc--EEEEEEECCCC-------------------
Confidence 45689999999999999999999988876543 4554 2233344444 67788999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
+.|..++..+++.+|++|+|||++++.+|..+..++..+.....
T Consensus 220 ------------------------------------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 220 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263 (329)
T ss_dssp ---------------------------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG
T ss_pred ------------------------------------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc
Confidence 77888888999999999999999999999999998888876545
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD 295 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt 295 (592)
..++|+|||+||+|+.+.. ..++... +.. .....++++|||++
T Consensus 264 ~~~~piilV~NK~Dl~~~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAM---------------------------------NAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp GTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred cCCCeEEEEEECccCCccc---------------------------------CHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 5689999999999997541 1122211 111 12345799999999
Q ss_pred CccHHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQAK 311 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~ 311 (592)
|.||+++|+.|++.+.
T Consensus 311 g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TBTHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999999874
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.86 E-value=6.7e-22 Score=186.77 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
+||+|+|++|||||||+++|++..+...+.+++. +.. .+.++ .+.+|||||.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~----------------- 58 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMM----------------- 58 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCT-----------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccc-----------------
Confidence 6999999999999999999999988766666554 222 22333 46679999972100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc-CCcEEEEEeCCCcCCHHHH-HHHHHH------
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS-ADAFILVYAIDDPNSFEEI-RLIRDH------ 213 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~-AD~iIlVyDvsd~~Sfe~l-~~~l~~------ 213 (592)
....+.++.+..+...+++. ++++++|||+.|..+|.++ ..|...
T Consensus 59 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~ 111 (190)
T 2cxx_A 59 ---------------------------GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPID 111 (190)
T ss_dssp ---------------------------TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHH
T ss_pred ---------------------------cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHH
Confidence 01112236788888888888 9999999999999999887 455432
Q ss_pred --HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC------
Q psy1524 214 --IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE------ 285 (592)
Q Consensus 214 --L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~------ 285 (592)
+.......++|+++|+||+|+... + .+++..+++....
T Consensus 112 ~~~~~~~~~~~~piilv~nK~Dl~~~-------------------------------~---~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 112 VEFYQFLRELDIPTIVAVNKLDKIKN-------------------------------V---QEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGCSC-------------------------------H---HHHHHHHHHHHTCCGGGHH
T ss_pred HHHHHHHHhcCCceEEEeehHhccCc-------------------------------H---HHHHHHHHHHhhhhhhccC
Confidence 222223357999999999999765 1 3445555543221
Q ss_pred CeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 286 NGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 286 ~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+++|||++|.||+++|+.+++.+...
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 2479999999999999999999988543
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.3e-21 Score=213.08 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=125.7
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.....+||+|+|.+|||||||+++|+++.+.. +.+|++ .....+.+++ +.+.||||+|+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~-~~~~~~~~~~--~~~~l~Dt~G~----------------- 376 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG-FNVETVTYKN--VKFNVWDVGGQ----------------- 376 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEESSS--CEEEEEEECCC-----------------
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc-eeEEEEEeCC--EEEEEEECCCc-----------------
Confidence 34567999999999999999999999988764 445665 3333444554 56778999999
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.|..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus 377 --------------------------------------~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~ 418 (497)
T 3lvq_E 377 --------------------------------------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 418 (497)
T ss_dssp --------------------------------------GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred --------------------------------------HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhh
Confidence 777788888999999999999999999999999999988775
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEccc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASA 293 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSA 293 (592)
....++|+|||+||+|+... ...++...... ......+++|||
T Consensus 419 ~~~~~~p~ilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 419 REMRDAIILIFANKQDLPDA---------------------------------MKPHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp GGGTTCEEEEEEECCSSSSC---------------------------------CCHHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred hhcCCCcEEEEEECCCCCcC---------------------------------CCHHHHHHHhchhhhhcCCeEEEEEEC
Confidence 44568999999999999754 11122221111 123446999999
Q ss_pred CCCccHHHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~~ 312 (592)
++|.||+++|++|++.+..
T Consensus 466 ~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988743
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=2.4e-21 Score=184.23 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=110.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...++|+|+|++|||||||+|+|++..+...+.++.+ ......+.+++ .+.||||+|.......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~------------ 85 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVS------------ 85 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSC------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccC------------
Confidence 4578999999999999999999998876655544443 12222233444 3667999997211000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
...++.+..+...++..+ |++++|+|+++..++.... ++..+.
T Consensus 86 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~ 131 (195)
T 1svi_A 86 ---------------------------------KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLK 131 (195)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHH
Confidence 001256777888888887 9999999999998887754 223332
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC--hHHHHHHHhhcCCCeEEEccc
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP--YDTTESVVQVDWENGFVEASA 293 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs--~ee~~~la~~~~~~~~~EvSA 293 (592)
. .+.|+++|+||+|+.... .+. .+++..........++++|||
T Consensus 132 ~----~~~p~i~v~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (195)
T 1svi_A 132 Y----YGIPVIVIATKADKIPKG-------------------------------KWDKHAKVVRQTLNIDPEDELILFSS 176 (195)
T ss_dssp H----TTCCEEEEEECGGGSCGG-------------------------------GHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred H----cCCCEEEEEECcccCChH-------------------------------HHHHHHHHHHHHHcccCCCceEEEEc
Confidence 2 478999999999997651 111 123333222234678999999
Q ss_pred CCCccHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQA 310 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i 310 (592)
++|.||+++|+.+++.+
T Consensus 177 ~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 177 ETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=5.4e-21 Score=175.42 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.||+|+|++|||||||+++|++..+. ..+.+++.+.....+..++. .+.||||+|+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~--------------- 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDK--------------- 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSS---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccc---------------
Confidence 69999999999999999999988643 44555555777777777776 456799999821000
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
....+......++..+|++|+|||+++..+.... .+...+..
T Consensus 65 ---------------------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~---- 106 (161)
T 2dyk_A 65 ---------------------------------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-EVAEYLRR---- 106 (161)
T ss_dssp ---------------------------------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-HHHHHHHH----
T ss_pred ---------------------------------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-HHHHHHHh----
Confidence 0133455666788999999999999987665432 22222322
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
.++|+++|+||+|+.+.. +++..+++ ....++++|||++|.||+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~-----------------------------------~~~~~~~~-~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHE-----------------------------------LYLGPLYG-LGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp HTCCEEEEEECCCSGGGG-----------------------------------GGCGGGGG-GSSCSCEECBTTTTBSHH
T ss_pred cCCCEEEEEECcccccch-----------------------------------HhHHHHHh-CCCCCeEEEecccCCChH
Confidence 368999999999997541 11223332 222269999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 301 QVFKELLVQA 310 (592)
Q Consensus 301 eLf~~Li~~i 310 (592)
++|+.+++.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=2.4e-21 Score=183.23 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=116.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCc-eeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRT-IEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+..+||+|+|++|||||||+++|++..+.....++ +.+.....+.+++ +.+.+|||+|+.....
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~------------- 69 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTA------------- 69 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSS-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCcccc-------------
Confidence 46789999999999999999999987654333344 3366666777776 5667799999821000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
......+...++. .+|++++|+|+++ ++....|+..+..
T Consensus 70 ------------------------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~ 110 (188)
T 2wjg_A 70 ------------------------------------NSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME 110 (188)
T ss_dssp ------------------------------------SSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT
T ss_pred ------------------------------------ccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh
Confidence 0111234555554 4999999999875 6677777777654
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.++|+|+|+||+|+... +.+. .++..+++ ..+.++++|||++|
T Consensus 111 ----~~~piilv~nK~Dl~~~-------------------------------~~~~-~~~~~~~~-~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 111 ----MGANLLLALNKMDLAKS-------------------------------LGIE-IDVDKLEK-ILGVKVVPLSAAKK 153 (188)
T ss_dssp ----TTCCEEEEEECHHHHHH-------------------------------TTCC-CCHHHHHH-HHTSCEEECBGGGT
T ss_pred ----cCCCEEEEEEhhhcccc-------------------------------ccch-HHHHHHHH-HhCCCeEEEEecCC
Confidence 47899999999999765 2222 23455554 34568999999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.+++.+.
T Consensus 154 ~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 154 MGIEELKKAISIAVK 168 (188)
T ss_dssp BSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999884
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.85 E-value=8.1e-21 Score=179.76 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=114.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
....+||+|+|++|||||||+|+|++..+. .+.++.+. ........+. .+.+|||+|.....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~------------- 82 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAK------------- 82 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSC-------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCcccc-------------
Confidence 356789999999999999999999988643 22333321 1111222232 35579999972110
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHI 214 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L 214 (592)
.....++.+..+...++..+ |++++|+|+++..+..... +...+
T Consensus 83 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~ 129 (195)
T 3pqc_A 83 --------------------------------VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWM 129 (195)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHH
T ss_pred --------------------------------CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHH
Confidence 00111256777888888877 9999999998876654432 23333
Q ss_pred HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
... ++|+++|+||+|+.+... +....+++..++......++++|||+
T Consensus 130 ~~~----~~p~i~v~nK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (195)
T 3pqc_A 130 KSL----NIPFTIVLTKMDKVKMSE-----------------------------RAKKLEEHRKVFSKYGEYTIIPTSSV 176 (195)
T ss_dssp HHT----TCCEEEEEECGGGSCGGG-----------------------------HHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred HHc----CCCEEEEEEChhcCChHH-----------------------------HHHHHHHHHHHHhhcCCCceEEEecC
Confidence 332 689999999999975411 22334555566554456789999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQAK 311 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i~ 311 (592)
+|.||+++|+++.+.+.
T Consensus 177 ~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 177 TGEGISELLDLISTLLK 193 (195)
T ss_dssp TCTTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998873
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=8.3e-21 Score=196.97 Aligned_cols=211 Identities=17% Similarity=0.136 Sum_probs=143.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
...-.|+|+|.+|||||||+|+|++..+. .....|+.+.....+..+ + +.+.||||||+.+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~----------- 74 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKK----------- 74 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCT-----------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCcccc-----------
Confidence 55679999999999999999999988764 455566666666666665 5 4556699999922100
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
.....+.+......++..+|++|+|+|+++..++.+...|+..+..
T Consensus 75 ----------------------------------~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~ 120 (308)
T 3iev_A 75 ----------------------------------SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP 120 (308)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred ----------------------------------chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence 0001145566777789999999999999999999988877777655
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKD 295 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAkt 295 (592)
.++|+|+|+||+|+... +....+....+.+.. ....+++|||++
T Consensus 121 ----~~~pvilV~NK~Dl~~~-------------------------------~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 121 ----LNKPVIVVINKIDKIGP-------------------------------AKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp ----GCCCEEEEEECGGGSSS-------------------------------GGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred ----cCCCEEEEEECccCCCC-------------------------------HHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 36899999999999733 122334555565543 346799999999
Q ss_pred CccHHHHHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeec
Q psy1524 296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWE 352 (592)
Q Consensus 296 g~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~ 352 (592)
|.||+++|+.+.+.+.......+......... ......-...+||..+..+..++.+
T Consensus 166 g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~ 231 (308)
T 3iev_A 166 GANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPG 231 (308)
T ss_dssp TBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEc
Confidence 99999999999998854433222110000000 0001133567888887766655443
No 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=1.4e-21 Score=204.15 Aligned_cols=163 Identities=20% Similarity=0.238 Sum_probs=119.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
||+++|++|||||||++++.++.+.. .+.+|++ +... ++ ..+.++||||+|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQ------------------- 56 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQ------------------- 56 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSC-------------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCc-------------------
Confidence 79999999999999999988664432 3567776 3322 23 4588999999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhH---HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA---MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
++|+. ++..|+++|+++|+|||++++ .++.+..|...+..
T Consensus 57 ------------------------------------Erf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~ 99 (331)
T 3r7w_B 57 ------------------------------------LNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEY 99 (331)
T ss_dssp ------------------------------------SSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHH
T ss_pred ------------------------------------hhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHH
Confidence 77754 478899999999999999998 44444444333322
Q ss_pred h-hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---CCCeEEEcc
Q psy1524 217 T-KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---WENGFVEAS 292 (592)
Q Consensus 217 ~-~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---~~~~~~EvS 292 (592)
. ...+++|++|||||+||..++... ...|.|+.++++.+++.. .++.|+|||
T Consensus 100 ~~~~~~~ipillvgNK~DL~~~~~R~------------------------~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 100 AYKVNPSINIEVLIHKVDGLSEDFKV------------------------DAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp HHHHCTTCEEEEECCCCCSSCSHHHH------------------------HHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred HhhcCCCCcEEEEEECcccCchhhhh------------------------hHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 1 124689999999999997642100 001456777888888742 578899999
Q ss_pred cCCCccHHHHHHHHHHHHHH
Q psy1524 293 AKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~~ 312 (592)
|++ .||.++|..+++.+..
T Consensus 156 Akd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSST
T ss_pred cCC-CcHHHHHHHHHHHHHh
Confidence 998 5999999999987743
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=2.5e-20 Score=207.13 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=117.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEE-------Eee--CCeEEEEEEEeCCCCCCCCccccc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED-------FSM--NGVHLKLDILDTSGEQSGKGLKCG 129 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~-------v~v--dg~~v~L~I~DT~G~~~~~~~~~~ 129 (592)
....+||+|+|++|||||||+++|++..+...+.+|++..+... +.+ ++..+.+.||||+|+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--------- 108 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--------- 108 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC---------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH---------
Confidence 46779999999999999999999999999888888888433322 122 344678888999998
Q ss_pred ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH
Q psy1524 130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL 209 (592)
Q Consensus 130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~ 209 (592)
+.|..+...+++.+|++|+|||+++. +.+..
T Consensus 109 ----------------------------------------------e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~ 139 (535)
T 3dpu_A 109 ----------------------------------------------EIMHASHQFFMTRSSVYMLLLDSRTD---SNKHY 139 (535)
T ss_dssp ----------------------------------------------CTTTTTCHHHHHSSEEEEEEECGGGG---GGHHH
T ss_pred ----------------------------------------------HHHHHHHHHHccCCcEEEEEEeCCCc---hhHHH
Confidence 67777778889999999999999865 56677
Q ss_pred HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEE
Q psy1524 210 IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFV 289 (592)
Q Consensus 210 ~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~ 289 (592)
|+..+... ..+.|+|+|+||+|+... +.+..+++..++. ..+.+++
T Consensus 140 ~~~~l~~~--~~~~pvilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~ 185 (535)
T 3dpu_A 140 WLRHIEKY--GGKSPVIVVMNKIDENPS-------------------------------YNIEQKKINERFP-AIENRFH 185 (535)
T ss_dssp HHHHHHHH--SSSCCEEEEECCTTTCTT-------------------------------CCCCHHHHHHHCG-GGTTCEE
T ss_pred HHHHHHHh--CCCCCEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-hcCCceE
Confidence 88888775 357999999999999765 5566677777665 4456799
Q ss_pred EcccCCCccHHHHHHHHHHHHHH
Q psy1524 290 EASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
+|||++|.||+++|+.+++.+..
T Consensus 186 ~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 186 RISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ECCC-----CTTHHHHHHHHHTC
T ss_pred EEecCcccCHHHHHHHHHHHHhc
Confidence 99999999999999999998854
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=7.5e-20 Score=198.42 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=120.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
+..+||+|+|.+|||||||+|+|++..+ ...+.+|+.+.....+..++.. ++||||||+......
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~----------- 239 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKV----------- 239 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTB-----------
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccc-----------
Confidence 4579999999999999999999998876 4566777777777778888865 566999998321100
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
....|.|..++. .+++.||++|+|||+++..++.+.. |+..+.+
T Consensus 240 ----------------------------------~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~ 284 (436)
T 2hjg_A 240 ----------------------------------YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE 284 (436)
T ss_dssp ----------------------------------CCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH
Confidence 012266777665 3789999999999999999988863 5555543
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HH---hhcCCCeEEEcc
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VV---QVDWENGFVEAS 292 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la---~~~~~~~~~EvS 292 (592)
.++|+|+|+||+|+.+. +.++.++... +. ......++++||
T Consensus 285 ----~~~~iiiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~S 329 (436)
T 2hjg_A 285 ----AGKAVVIVVNKWDAVDK-------------------------------DESTMKEFEENIRDHFQFLDYAPILFMS 329 (436)
T ss_dssp ----TTCEEEEEEECGGGSCC-------------------------------CTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred ----cCCcEEEEEECccCCCc-------------------------------chHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 47899999999999865 2333222221 11 123457899999
Q ss_pred cCCCccHHHHHHHHHHHHHHh
Q psy1524 293 AKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 293 Aktg~gVeeLf~~Li~~i~~~ 313 (592)
|++|.||+++|+.+.+.+...
T Consensus 330 A~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 330 ALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp TTTCTTGGGHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988654
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=1e-19 Score=184.17 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=113.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...++|+|+|.+|||||||+|+|++..+. ..+..++.+.....+..++ +.+.||||||+......
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~------------ 68 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYS------------ 68 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSS------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCC------------
Confidence 35689999999999999999999987654 3444445455555566555 56677999998210000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
..-..+...++ ..+|++|+|+|+++.++. ..|+..+.+
T Consensus 69 -------------------------------------~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~ 108 (258)
T 3a1s_A 69 -------------------------------------SIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE 108 (258)
T ss_dssp -------------------------------------SHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT
T ss_pred -------------------------------------CHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh
Confidence 00112334444 589999999999986533 335555544
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.++|+|+|+||+|+... +.+.. ++..+++ ..++++++|||++|
T Consensus 109 ----~~~pvilv~NK~Dl~~~-------------------------------~~i~~-~~~~l~~-~lg~~vi~~SA~~g 151 (258)
T 3a1s_A 109 ----MEKKVILAMTAIDEAKK-------------------------------TGMKI-DRYELQK-HLGIPVVFTSSVTG 151 (258)
T ss_dssp ----TTCCEEEEEECHHHHHH-------------------------------TTCCB-CHHHHHH-HHCSCEEECCTTTC
T ss_pred ----cCCCEEEEEECcCCCCc-------------------------------cchHH-HHHHHHH-HcCCCEEEEEeeCC
Confidence 37899999999999765 23332 2455554 44678999999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.+++.+.
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999998763
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=8.4e-20 Score=186.51 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=110.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..++|+|+|++|||||||+|+|++.. +..++..++.+.....+ +. .+.++||||||+.....
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~-------------- 64 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSP-------------- 64 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSC--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCC--------------
Confidence 35799999999999999999999765 45666555555444433 33 45677799999811000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
. .....+...|+. .+|++|+|||+++.+ ....|...+.+
T Consensus 65 ----------------------------------~-~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~- 105 (272)
T 3b1v_A 65 ----------------------------------Y-SPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE- 105 (272)
T ss_dssp ----------------------------------S-SHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH-
T ss_pred ----------------------------------C-ChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh-
Confidence 0 011235555665 699999999998754 33445555554
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.++|+|+|+||+|+... +.+. .++..+++ ..++++++|||++|.
T Consensus 106 ---~~~p~ilv~NK~Dl~~~-------------------------------~~~~-~~~~~l~~-~lg~~vi~~SA~~g~ 149 (272)
T 3b1v_A 106 ---TGIPVTIALNMIDVLDG-------------------------------QGKK-INVDKLSY-HLGVPVVATSALKQT 149 (272)
T ss_dssp ---TCSCEEEEEECHHHHHH-------------------------------TTCC-CCHHHHHH-HHTSCEEECBTTTTB
T ss_pred ---cCCCEEEEEEChhhCCc-------------------------------CCcH-HHHHHHHH-HcCCCEEEEEccCCC
Confidence 37899999999999765 2222 23445554 346789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
||+++|+.+++.+
T Consensus 150 gi~el~~~i~~~~ 162 (272)
T 3b1v_A 150 GVDQVVKKAAHTT 162 (272)
T ss_dssp SHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1.9e-19 Score=175.17 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=112.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC---CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT---FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~---f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
...++|+|+|.+|||||||+|+|++.. ....+..++.+.....+.. .....+.||||||.......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~---------- 95 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVP---------- 95 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCC----------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCC----------
Confidence 457899999999999999999999886 3344444544433333221 22345667999998321100
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDH 213 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~ 213 (592)
...++.+..+...++.. +|++|+|+|+++..+... ..++..
T Consensus 96 -----------------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~ 139 (223)
T 4dhe_A 96 -----------------------------------GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEW 139 (223)
T ss_dssp -----------------------------------STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHH
T ss_pred -----------------------------------hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHH
Confidence 00125566677777777 667999999998665332 334444
Q ss_pred HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cCCCe
Q psy1524 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DWENG 287 (592)
Q Consensus 214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~~~~ 287 (592)
+.. .++|+|+|+||+|+...... ....+........ ....+
T Consensus 140 l~~----~~~p~i~v~nK~Dl~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 140 FAP----TGKPIHSLLTKCDKLTRQES-----------------------------INALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HGG----GCCCEEEEEECGGGSCHHHH-----------------------------HHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred HHh----cCCCEEEEEeccccCChhhH-----------------------------HHHHHHHHHHHHhhhhcccCCCCe
Confidence 433 47899999999999764110 0001111222221 25678
Q ss_pred EEEcccCCCccHHHHHHHHHHHHH
Q psy1524 288 FVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 288 ~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
+++|||++|.||+++|+.|.+.+.
T Consensus 187 ~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 187 VQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred EEEeecCCCcCHHHHHHHHHHhcC
Confidence 999999999999999999998873
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=3e-19 Score=194.73 Aligned_cols=175 Identities=19% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
....+||+++|.+|||||||+|+|++.. +...+.+|+.+.....+..++. .++||||+|......
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~----------- 258 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGK----------- 258 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTT-----------
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcc-----------
Confidence 4567999999999999999999999764 3466667777777777788886 456699999722110
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH-hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL-SISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
....+++|..++.. +++.||++|+|+|+++..+.. ...|+..+.
T Consensus 259 ----------------------------------~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~ 303 (456)
T 4dcu_A 259 ----------------------------------VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAH 303 (456)
T ss_dssp ----------------------------------BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHH
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHH
Confidence 01223778877765 789999999999999865533 334555454
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEc
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEA 291 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~Ev 291 (592)
+ .++|+|+|+||+|+.+. +.++.+++...++.. ...++++|
T Consensus 304 ~----~~~~~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 304 E----AGKAVVIVVNKWDAVDK-------------------------------DESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp H----TTCEEEEEEECGGGSCC-------------------------------CSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred H----cCCCEEEEEEChhcCCC-------------------------------chHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 4 46899999999999865 445555555554433 25789999
Q ss_pred ccCCCccHHHHHHHHHHHHHHhccc
Q psy1524 292 SAKDNTNITQVFKELLVQAKVKYNL 316 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~~i~~~~~~ 316 (592)
||++|.||+++|+.+.+.+......
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred cCCCCcCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988665443
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=5.2e-20 Score=178.87 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCC---CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
....++|+|+|++|||||||+++|++..+.. .+.+++... ...+.+.||||+|+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~G~--------------- 65 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------YDGSGVTLVDFPGH--------------- 65 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------GGGSSCEEEECCCC---------------
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------eeCceEEEEECCCc---------------
Confidence 3567899999999999999999999887754 344444311 13356777999999
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc----CCcEEEEEeCC-CcCCHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS----ADAFILVYAID-DPNSFEEIRLI 210 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~----AD~iIlVyDvs-d~~Sfe~l~~~ 210 (592)
+.+..++..++.. +|++|+|||++ ++.+|..+..|
T Consensus 66 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~ 105 (218)
T 1nrj_B 66 ----------------------------------------VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF 105 (218)
T ss_dssp ----------------------------------------GGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHH
Confidence 7777777777777 89999999999 89999999999
Q ss_pred HHHHHHhh---cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC------hHHHHHHHh
Q psy1524 211 RDHIFETK---ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP------YDTTESVVQ 281 (592)
Q Consensus 211 l~~L~~~~---~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs------~ee~~~la~ 281 (592)
+..+.... ...++|+++|+||+|+... +.+. .+++..++.
T Consensus 106 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 106 LVDILSITESSCENGIDILIACNKSELFTA-------------------------------RPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp HHHHHHHHHHHSTTCCCEEEEEECTTSTTC-------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCCCEEEEEEchHhccc-------------------------------CCHHHHHHHHHHHHHHHHH
Confidence 88877643 2368999999999999765 2222 334445544
Q ss_pred hcCCCeEEEcccCCCcc
Q psy1524 282 VDWENGFVEASAKDNTN 298 (592)
Q Consensus 282 ~~~~~~~~EvSAktg~g 298 (592)
.....|+++||++|.+
T Consensus 155 -~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 -RRKKSLNEVERKINEE 170 (218)
T ss_dssp -HHHHHHHC--------
T ss_pred -HHhccccccccccccc
Confidence 3345789999999876
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=3.7e-19 Score=195.29 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=100.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..++|+|+|.+|||||||+|+|++.. +...+.+|+.+.....+.+++. .+.||||+|+.+.. .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~-------------~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAG-------------E 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcch-------------h
Confidence 45899999999999999999999875 4566777787888888888885 46669999982210 0
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
..+.+++. ....++..+|++|+|||++++.++..+..+...+...
T Consensus 297 ~ve~~gi~----------------------------------~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l- 341 (476)
T 3gee_A 297 EIEHEGIR----------------------------------RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH- 341 (476)
T ss_dssp ---------------------------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-
T ss_pred HHHHHHHH----------------------------------HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-
Confidence 01111111 1122578899999999999999987555444444443
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
.++|+|+|+||+|+... +.+ ....+.+. ...++++|||++|.|
T Consensus 342 --~~~piIvV~NK~Dl~~~-------------------------------~~~---~~~~l~~~-~~~~~i~vSAktg~G 384 (476)
T 3gee_A 342 --PAAKFLTVANKLDRAAN-------------------------------ADA---LIRAIADG-TGTEVIGISALNGDG 384 (476)
T ss_dssp --TTSEEEEEEECTTSCTT-------------------------------THH---HHHHHHHH-HTSCEEECBTTTTBS
T ss_pred --CCCCEEEEEECcCCCCc-------------------------------cch---hHHHHHhc-CCCceEEEEECCCCC
Confidence 27899999999999765 111 11233332 126799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQAK 311 (592)
Q Consensus 299 VeeLf~~Li~~i~ 311 (592)
|+++|+.+.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998873
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=8.7e-19 Score=181.47 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=114.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
.+..+|+|+|.+|||||||+|+|++..+. .....|+.+.....+..++ ..+.||||||+.....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~------------ 70 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMD------------ 70 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCS------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhh------------
Confidence 45578999999999999999999988774 3444566655554444454 5566799999821000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH-HHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR-DHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l-~~L~~ 216 (592)
...+.+......+++.+|++|+|||++++.+... .|+ ..+..
T Consensus 71 -----------------------------------~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~ 113 (301)
T 1wf3_A 71 -----------------------------------ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKP 113 (301)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGG
T ss_pred -----------------------------------HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHh
Confidence 0013355666778999999999999998876553 343 34433
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
. ..++|+|+|+||+|+..... .+ .+.+..+ .....+++|||++|
T Consensus 114 ~--~~~~p~ilV~NK~Dl~~~~~------------------------------~~-~~~~~~~---~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 114 L--VGKVPILLVGNKLDAAKYPE------------------------------EA-MKAYHEL---LPEAEPRMLSALDE 157 (301)
T ss_dssp G--TTTSCEEEEEECGGGCSSHH------------------------------HH-HHHHHHT---STTSEEEECCTTCH
T ss_pred h--cCCCCEEEEEECcccCCchH------------------------------HH-HHHHHHh---cCcCcEEEEeCCCC
Confidence 2 24789999999999975410 00 1122222 22346899999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.||+++|+.+.+.+.
T Consensus 158 ~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 158 RQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999987663
No 128
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=5.7e-19 Score=179.22 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=112.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+.++|+|+|++|||||||+|+|++..+.....+ ++.+.....+..++.. +.||||||+.+...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~-------------- 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTA-------------- 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCS--------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCcccccc--------------
Confidence 468999999999999999999998766433333 3446666777777755 56699999821000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
......+...++ .++|++|+|+|+++. +....++..+.+.
T Consensus 66 -----------------------------------~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~ 107 (271)
T 3k53_A 66 -----------------------------------HSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM 107 (271)
T ss_dssp -----------------------------------SCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT
T ss_pred -----------------------------------CCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc
Confidence 001112344455 689999999999875 3334455555443
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
..+|+++|+||+|+... +.+..+ ...+.+ ..++++++|||++|.
T Consensus 108 ---~~~p~ilv~NK~Dl~~~-------------------------------~~~~~~-~~~l~~-~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 108 ---EVKNIILVLNKFDLLKK-------------------------------KGAKID-IKKMRK-ELGVPVIPTNAKKGE 151 (271)
T ss_dssp ---TCCSEEEEEECHHHHHH-------------------------------HTCCCC-HHHHHH-HHSSCEEECBGGGTB
T ss_pred ---CCCCEEEEEEChhcCcc-------------------------------cccHHH-HHHHHH-HcCCcEEEEEeCCCC
Confidence 23899999999998765 112211 344444 456789999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.+.+.+.
T Consensus 152 gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 152 GVEELKRMIALMAE 165 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=1.5e-19 Score=182.95 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+|+|+|.+|||||||+|+|++..+. ..+.+++.+.....+.+++. .+.||||||+.+.....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~-------------- 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANA-------------- 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccc--------------
Confidence 48999999999999999999987543 44455555777788888886 55669999982110000
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
........+...++ ..+|++|+|+|+++.+++..+ ...+.+
T Consensus 66 -------------------------------~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~~--- 108 (256)
T 3iby_A 66 -------------------------------EGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLFE--- 108 (256)
T ss_dssp ----------------------------------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHTT---
T ss_pred -------------------------------cCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHHH---
Confidence 00011123445566 889999999999985544333 333322
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
.++|+|+|+||+|+... +.+.. ....+.+ ..++++++|||++|.||
T Consensus 109 -~~~pvilv~NK~Dl~~~-------------------------------~~~~~-~~~~l~~-~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 109 -LGKPVVVALNMMDIAEH-------------------------------RGISI-DTEKLES-LLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp -SCSCEEEEEECHHHHHH-------------------------------TTCEE-CHHHHHH-HHCSCEEECBGGGTBSH
T ss_pred -cCCCEEEEEEChhcCCc-------------------------------CCcHH-HHHHHHH-HcCCCEEEEECCCCCCH
Confidence 37899999999999765 12211 1233443 44678999999999999
Q ss_pred HHHHHHHHHH
Q psy1524 300 TQVFKELLVQ 309 (592)
Q Consensus 300 eeLf~~Li~~ 309 (592)
+++|+.+.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=3.2e-19 Score=181.94 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=110.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
..++|+|+|.+|||||||+|+|++..+. ..+..++.+.....+..++..+ .||||||+.+.....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~------------ 67 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV--TLVDLPGTYSLTTIS------------ 67 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEE--EEEECCCCSCSCC--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCce--EEEECcCCCcccccc------------
Confidence 4689999999999999999999987654 3444555577777777777555 559999982210000
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh--hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS--ISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
.....-..+...+ ...+|++|+|+|+++.++ ...+...+.+.
T Consensus 68 ---------------------------------~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~~ 111 (274)
T 3i8s_A 68 ---------------------------------SQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL 111 (274)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHH---HHHHHHHHHHH
T ss_pred ---------------------------------ccCCHHHHHHHHHHhhcCCCEEEEEecCCChHH---HHHHHHHHHhc
Confidence 0000011223333 378999999999998543 33444445443
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
++|+|+|+||+|+... +.+. .....+++ ..++++++|||++|.
T Consensus 112 ----~~p~ivv~NK~Dl~~~-------------------------------~~~~-~~~~~l~~-~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 112 ----GIPCIVALNMLDIAEK-------------------------------QNIR-IEIDALSA-RLGCPVIPLVSTRGR 154 (274)
T ss_dssp ----TCCEEEEEECHHHHHH-------------------------------TTEE-ECHHHHHH-HHTSCEEECCCGGGH
T ss_pred ----CCCEEEEEECccchhh-------------------------------hhHH-HHHHHHHH-hcCCCEEEEEcCCCC
Confidence 6899999999998765 1111 11233443 446789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQA 310 (592)
Q Consensus 298 gVeeLf~~Li~~i 310 (592)
||+++|+.+.+.+
T Consensus 155 gi~el~~~i~~~~ 167 (274)
T 3i8s_A 155 GIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887665
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=2.9e-18 Score=186.10 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~ 140 (592)
.+|+|+|.+|||||||+|+|++... ..++.+++.+.....+.+++..+ +||||+|+....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~--~l~DT~G~~~~~---------------- 63 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF--KLVDTCGVFDNP---------------- 63 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE--EEEECTTTTSSG----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE--EEEECCCccccc----------------
Confidence 4899999999999999999998763 46667777787778888888764 569999982100
Q ss_pred hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524 141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~ 220 (592)
....++.+......++++||++|+|||+++..++.+.. +...+.+
T Consensus 64 ------------------------------~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~-i~~~l~~---- 108 (439)
T 1mky_A 64 ------------------------------QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-LADFLRK---- 108 (439)
T ss_dssp ------------------------------GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-HHHHHHH----
T ss_pred ------------------------------cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence 00112456667778899999999999999887765421 2222332
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-HHHHhhcCCCeEEEcccCCCccH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-ESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-~~la~~~~~~~~~EvSAktg~gV 299 (592)
.++|+|+|+||+|+... . ..++ ..+.. .....+++|||++|.||
T Consensus 109 ~~~p~ilv~NK~D~~~~---------------------------------~-~~~~~~~~~~-lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 109 STVDTILVANKAENLRE---------------------------------F-EREVKPELYS-LGFGEPIPVSAEHNINL 153 (439)
T ss_dssp HTCCEEEEEESCCSHHH---------------------------------H-HHHTHHHHGG-GSSCSCEECBTTTTBSH
T ss_pred cCCCEEEEEeCCCCccc---------------------------------c-HHHHHHHHHh-cCCCCEEEEeccCCCCH
Confidence 26899999999998532 0 0112 33332 22225899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+++|+.+++.+..
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999998853
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=1.2e-18 Score=191.42 Aligned_cols=158 Identities=20% Similarity=0.345 Sum_probs=117.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCC-CCCcccccccccCCCCc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-SGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~-~~~~~~~~~~~~~~~~~ 138 (592)
.++|+|+|.+|||||||+|+|++.. +..++.+|+.|.....+.+++.. +.||||+|+. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~------------- 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETND------------- 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCT-------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchh-------------
Confidence 3899999999999999999999775 46778888888888888888865 5669999993 2110
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
.. +.+. .....++..||++|+|||++++.++++... +..+
T Consensus 308 ~v-----------------------------------e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l--- 348 (482)
T 1xzp_A 308 LV-----------------------------------ERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI--- 348 (482)
T ss_dssp TC-----------------------------------CCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH---
T ss_pred hH-----------------------------------HHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh---
Confidence 00 1111 122346889999999999999999876542 2222
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
.++|+|+|+||+|+... ++.++...++. ...++++|||++|.
T Consensus 349 ---~~~piivV~NK~DL~~~---------------------------------~~~~~~~~~~~--~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 349 ---KNKRYLVVINKVDVVEK---------------------------------INEEEIKNKLG--TDRHMVKISALKGE 390 (482)
T ss_dssp ---TTSSEEEEEEECSSCCC---------------------------------CCHHHHHHHHT--CSTTEEEEEGGGTC
T ss_pred ---cCCCEEEEEECcccccc---------------------------------cCHHHHHHHhc--CCCcEEEEECCCCC
Confidence 36899999999999642 22334444332 34679999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
||+++|+.|.+.+.
T Consensus 391 Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 391 GLEKLEESIYRETQ 404 (482)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=1.7e-17 Score=175.28 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=118.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
...++|+|+|++|||||||+|+|++..+. ..+..++.+.....+..++ ..+.+|||+|+.... .+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~------------~~ 230 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRP------------IS 230 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSC------------ST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccc------------hh
Confidence 45689999999999999999999987643 2334445444444444454 456779999982100 00
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC--CHHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN--SFEEIRLIRDHIFE 216 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~--Sfe~l~~~l~~L~~ 216 (592)
..+. -... ....+...+|++|+|+|+++.. +++....|+..+..
T Consensus 231 ~~~~---------------------------------~~~~-~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 231 ERNE---------------------------------IEKQ-AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp TSCH---------------------------------HHHH-HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred hhhH---------------------------------HHHH-HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 0000 0001 1123345699999999999887 78888888888877
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
.. .+.|+|+|+||+|+.... . .+++..++. ....++++|||++|
T Consensus 277 ~~--~~~piilV~NK~Dl~~~~-------------------------------~--~~~~~~~~~-~~~~~~~~iSA~~g 320 (357)
T 2e87_A 277 EF--KDLPFLVVINKIDVADEE-------------------------------N--IKRLEKFVK-EKGLNPIKISALKG 320 (357)
T ss_dssp HT--TTSCEEEEECCTTTCCHH-------------------------------H--HHHHHHHHH-HTTCCCEECBTTTT
T ss_pred hc--CCCCEEEEEECcccCChH-------------------------------H--HHHHHHHHH-hcCCCeEEEeCCCC
Confidence 53 278999999999997641 1 133444444 34678999999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy1524 297 TNITQVFKELLVQAKVK 313 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~~~ 313 (592)
+||+++|+.+++.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988543
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=2.8e-18 Score=180.82 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
.+|+|+|.+|||||||+|+|++... ..++..|+.+.....+.+++. ..+.||||||+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~------------------ 219 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEG------------------ 219 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHH------------------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCccc------------------
Confidence 3689999999999999999997654 245666666555555666642 34667999997100
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh---hhcCCcEEEEEeCCC---cCCHHHHHHHHHHHH
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS---ISSADAFILVYAIDD---PNSFEEIRLIRDHIF 215 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~ 215 (592)
+ ..+..+...+ +..+|++|+|||+++ +.+++++..|+.+|.
T Consensus 220 ------a---------------------------~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~ 266 (342)
T 1lnz_A 220 ------A---------------------------HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELS 266 (342)
T ss_dssp ------T---------------------------TCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHH
T ss_pred ------c---------------------------cccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHH
Confidence 0 1122233333 456999999999999 788999999999988
Q ss_pred Hhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEccc
Q psy1524 216 ETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASA 293 (592)
Q Consensus 216 ~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSA 293 (592)
.+.. ..++|+|+|+||+|+.... +....+++... ..++++|||
T Consensus 267 ~~~~~l~~~p~ilV~NK~Dl~~~~-----------------------------------e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 267 EYNLRLTERPQIIVANKMDMPEAA-----------------------------------ENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp HSCSSTTTSCBCBEEECTTSTTHH-----------------------------------HHHHHHHHHCCSCCCBCCCSS
T ss_pred HhhhhhcCCCEEEEEECccCCCCH-----------------------------------HHHHHHHHHhhcCCCEEEEEC
Confidence 7521 2578999999999987541 23344443222 257999999
Q ss_pred CCCccHHHHHHHHHHHHH
Q psy1524 294 KDNTNITQVFKELLVQAK 311 (592)
Q Consensus 294 ktg~gVeeLf~~Li~~i~ 311 (592)
+++.||+++|+.|.+.+.
T Consensus 312 ~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLE 329 (342)
T ss_dssp CCSSTTHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999999883
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=1.2e-18 Score=188.49 Aligned_cols=163 Identities=21% Similarity=0.189 Sum_probs=111.0
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
.....++|+|+|..|||||||+|+|++..+. ..+..++.+.....+.+++. ..++||||||+.+....
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l--------- 99 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGEL--------- 99 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTT---------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccch---------
Confidence 3456799999999999999999999988763 45566666777777777664 25677999999321100
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
....+. ....++..+|++|+|||++. ......|+..+.
T Consensus 100 --------------------------------------~~~~~~-~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~ 137 (423)
T 3qq5_A 100 --------------------------------------GRLRVE-KARRVFYRADCGILVTDSAP---TPYEDDVVNLFK 137 (423)
T ss_dssp --------------------------------------CCCCHH-HHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHH
T ss_pred --------------------------------------hHHHHH-HHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHH
Confidence 001122 23456888999999999832 234456777776
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt 295 (592)
+. ++|+|+|+||+|+... +.. +.+..+++ ..+.++++|||++
T Consensus 138 ~~----~~piIvV~NK~Dl~~~-------------------------------~~~--~~~~~l~~-~~g~~v~~vSAkt 179 (423)
T 3qq5_A 138 EM----EIPFVVVVNKIDVLGE-------------------------------KAE--ELKGLYES-RYEAKVLLVSALQ 179 (423)
T ss_dssp HT----TCCEEEECCCCTTTTC-------------------------------CCT--HHHHHSSC-CTTCCCCCCSSCC
T ss_pred hc----CCCEEEEEeCcCCCCc-------------------------------cHH--HHHHHHHH-HcCCCEEEEECCC
Confidence 64 7899999999999865 122 44455544 4567899999999
Q ss_pred CccHHHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLVQA 310 (592)
Q Consensus 296 g~gVeeLf~~Li~~i 310 (592)
|.||+++|+.+++.+
T Consensus 180 g~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 180 KKGFDDIGKTISEIL 194 (423)
T ss_dssp TTSTTTHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999999887
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=3.1e-17 Score=178.05 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=113.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...+||+|+|++|||||||+|+|++..+ ...+..|+.+.....+.+++..+ .+|||+|+......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~--~l~Dt~G~~~~~~~----------- 244 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRKSRV----------- 244 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE--EESSCSCC-----------------
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE--EEEECCCCcccccc-----------
Confidence 3569999999999999999999998765 46667777777777788888754 56999998211000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
.. ...+.|..+. ..++..+|++++|+|+++..++.+.. +...+..
T Consensus 245 --------~~-------------------------~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~ 290 (439)
T 1mky_A 245 --------EP-------------------------RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER 290 (439)
T ss_dssp --------------------------------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH
T ss_pred --------ch-------------------------hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence 00 0003333333 24678899999999999988876532 2333322
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-----HHHHhhcCCCeEEEc
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-----ESVVQVDWENGFVEA 291 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-----~~la~~~~~~~~~Ev 291 (592)
.++|+|+|+||+|+.+. +..+.++. ..+.. ....+++++
T Consensus 291 ----~~~~~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (439)
T 1mky_A 291 ----RGRASVVVFNKWDLVVH-------------------------------REKRYDEFTKLFREKLYF-IDYSPLIFT 334 (439)
T ss_dssp ----TTCEEEEEEECGGGSTT-------------------------------GGGCHHHHHHHHHHHCGG-GTTSCEEEC
T ss_pred ----cCCCEEEEEECccCCCc-------------------------------hhhHHHHHHHHHHHHhcc-CCCCcEEEE
Confidence 47899999999999764 11222222 22221 335679999
Q ss_pred ccCCCccHHHHHHHHHHHHHHh
Q psy1524 292 SAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 292 SAktg~gVeeLf~~Li~~i~~~ 313 (592)
||++|.||+++|+.+.+.+...
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=4.9e-18 Score=184.19 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
.++|+|+|.+|||||||+|+|++..+. ..+.+++.+.....+..++. .+.||||+|+....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~--------------- 65 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGD--------------- 65 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcc---------------
Confidence 369999999999999999999987653 55566666766666666665 45669999982100
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA 219 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~ 219 (592)
....+.+......++..||++|+|+|+++..++.+. ++..+.+
T Consensus 66 --------------------------------~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l~--- 108 (436)
T 2hjg_A 66 --------------------------------EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKILY--- 108 (436)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHT---
T ss_pred --------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHH---
Confidence 001145667777889999999999999998887653 2332222
Q ss_pred CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299 (592)
Q Consensus 220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV 299 (592)
..++|+|+|+||+|+..... . +..+.. .....+++|||++|.|+
T Consensus 109 ~~~~pvilv~NK~D~~~~~~------------------------------~-----~~~~~~-lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 109 RTKKPVVLAVNKLDNTEMRA------------------------------N-----IYDFYS-LGFGEPYPISGTHGLGL 152 (436)
T ss_dssp TCCSCEEEEEECCCC-----------------------------------C-----CCSSGG-GSSCCCEECBTTTTBTH
T ss_pred HcCCCEEEEEECccCccchh------------------------------h-----HHHHHH-cCCCCeEEEeCcCCCCh
Confidence 35789999999999875410 0 001111 11225899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAK 311 (592)
Q Consensus 300 eeLf~~Li~~i~ 311 (592)
+++|+.+++.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999988774
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=5.4e-18 Score=185.35 Aligned_cols=158 Identities=21% Similarity=0.333 Sum_probs=104.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
..++|+|+|++|||||||+|+|++.. +...+.+|+.+.....+.+++..+ .||||+|+.+.. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v--~liDT~G~~~~~-------------~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV--QVLDTAGIRETS-------------D 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE--EECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE--EEEECCccccch-------------h
Confidence 45899999999999999999999764 355666777777777778888655 569999983211 0
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
..+.+++.+ ...++..+|++|+|||++++.++.. ..++..+
T Consensus 288 ~ve~~gi~~----------------------------------~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l---- 328 (462)
T 3geh_A 288 QVEKIGVER----------------------------------SRQAANTADLVLLTIDAATGWTTGD-QEIYEQV---- 328 (462)
T ss_dssp ---------------------------------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH----
T ss_pred HHHHHHHHH----------------------------------HhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc----
Confidence 111111111 1124778999999999999888765 3344433
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g 298 (592)
...|+|+|+||+|+..... +. ....+ ....++++|||++|.|
T Consensus 329 --~~~piivV~NK~Dl~~~~~-------------------------------~~--~~~~~---~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 329 --KHRPLILVMNKIDLVEKQL-------------------------------IT--SLEYP---ENITQIVHTAAAQKQG 370 (462)
T ss_dssp --TTSCEEEEEECTTSSCGGG-------------------------------ST--TCCCC---TTCCCEEEEBTTTTBS
T ss_pred --cCCcEEEEEECCCCCcchh-------------------------------hH--HHHHh---ccCCcEEEEECCCCCC
Confidence 2369999999999976521 00 00001 1345799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1524 299 ITQVFKELLVQA 310 (592)
Q Consensus 299 VeeLf~~Li~~i 310 (592)
|+++|+.+.+.+
T Consensus 371 i~eL~~~i~~~~ 382 (462)
T 3geh_A 371 IDSLETAILEIV 382 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.71 E-value=1.4e-16 Score=170.96 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=114.0
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeE-----------EE-----EEee---CCeEEEEEEEeCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH-----------HE-----DFSM---NGVHLKLDILDTSG 119 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~-----------~~-----~v~v---dg~~v~L~I~DT~G 119 (592)
....++|+++|.+|||||||+++|++............... .. .+.. ......+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 35679999999999999999999997543321000000000 00 0000 11226788899999
Q ss_pred CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID 199 (592)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs 199 (592)
+ +.|......++..+|++|+|+|++
T Consensus 85 h-------------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~ 109 (403)
T 3sjy_A 85 H-------------------------------------------------------EVLMATMLSGAALMDGAILVVAAN 109 (403)
T ss_dssp C-------------------------------------------------------GGGHHHHHHHHTTCSEEEEEEETT
T ss_pred c-------------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECC
Confidence 9 788888888899999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH
Q psy1524 200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV 279 (592)
Q Consensus 200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l 279 (592)
+..++.....++..+... ...|+|+|+||+|+.+.... ....++...+
T Consensus 110 ~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~-----------------------------~~~~~~i~~~ 157 (403)
T 3sjy_A 110 EPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEA-----------------------------LSQYRQIKQF 157 (403)
T ss_dssp SCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHH-----------------------------HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHH-----------------------------HHHHHHHHHH
Confidence 988788888887766554 23589999999999765210 0011222223
Q ss_pred Hhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 280 VQVD--WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 280 a~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.... ...+++++||++|.||+++|+.|.+.+
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2211 256799999999999999999998765
No 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.70 E-value=3.1e-17 Score=173.57 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=92.3
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
+.++.++..|+++++++|+|||+++ ..++.+...|+..+.......++|+|||+||+|+.... + ..
T Consensus 204 e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k--i--~~ 279 (353)
T 1cip_A 204 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK--I--KK 279 (353)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH--H--TT
T ss_pred hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhh--c--cc
Confidence 8899999999999999999999999 56688888888888765444679999999999996431 0 00
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----------cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----------DWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+..++. .....++.+++..++.. ...+.+++|||++|.||+++|+++.+.+...
T Consensus 280 ~~l~~~fp------------~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 280 SPLTICYP------------EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp SCGGGTCT------------TCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccc------------ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 11111111 11124678888887762 3466799999999999999999999998654
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=1.5e-16 Score=169.05 Aligned_cols=170 Identities=19% Similarity=0.120 Sum_probs=111.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK 142 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~ 142 (592)
.|+|+|++|||||||+|+|++..+. .++..++.|.....+.+++.. +.+|||+|+.. ..+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~-----------~lp~~l--- 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIR-----------GIPPQI--- 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCS-----------SCCGGG---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchh-----------cCCHHH---
Confidence 4999999999999999999987653 455666667778888888854 56699999711 000000
Q ss_pred HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC--CHHHHHHHHHHHHHhhcC
Q psy1524 143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN--SFEEIRLIRDHIFETKAS 220 (592)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~--Sfe~l~~~l~~L~~~~~~ 220 (592)
.+.|..... .+..||++++|+|++++. +++.+..|...+... ..
T Consensus 245 --------------------------------ve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~ 290 (364)
T 2qtf_A 245 --------------------------------VDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV 290 (364)
T ss_dssp --------------------------------HHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC
T ss_pred --------------------------------HHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc
Confidence 023443333 478899999999999886 566666666666554 44
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCcc
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTN 298 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~g 298 (592)
.+.|+|+|+||+|+..... . ...+.+..+++.. ....++++||++|.|
T Consensus 291 ~~~p~ilV~NK~Dl~~~~~-----------------------------~-~~~~~~~~l~~~l~~~~~~~~~~SA~~g~g 340 (364)
T 2qtf_A 291 SGKPILVTLNKIDKINGDL-----------------------------Y-KKLDLVEKLSKELYSPIFDVIPISALKRTN 340 (364)
T ss_dssp CSCCEEEEEECGGGCCSCH-----------------------------H-HHHHHHHHHHHHHCSCEEEEEECBTTTTBS
T ss_pred CCCCEEEEEECCCCCCchH-----------------------------H-HHHHHHHHHHHHhcCCCCcEEEEECCCCcC
Confidence 6789999999999875310 0 0011222222322 134689999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1524 299 ITQVFKELLVQAKVK 313 (592)
Q Consensus 299 VeeLf~~Li~~i~~~ 313 (592)
++++++.|.+.+...
T Consensus 341 i~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 341 LELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999877543
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.69 E-value=1.6e-17 Score=175.71 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=87.6
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
++|+.++..|+++++++|+|||++ +..+|+++..|+..+.+.....++|+||||||+||...... ...
T Consensus 194 e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~--~v~ 271 (354)
T 2xtz_A 194 RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL--DVP 271 (354)
T ss_dssp TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT--TSC
T ss_pred hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc--ccc
Confidence 889999999999999999999998 78899999999988877544468999999999999754100 000
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---------------CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---------------WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---------------~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....++.+.. .......+.+++..++... ....+++|||+++.||+++|+.+.+.+
T Consensus 272 l~~~~~fp~y~--------~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 272 LNVCEWFRDYQ--------PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp GGGSGGGTTCC--------CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccccc--------cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 00000000000 0000112356666664321 223468999999999999999999988
Q ss_pred HHh
Q psy1524 311 KVK 313 (592)
Q Consensus 311 ~~~ 313 (592)
...
T Consensus 344 ~~~ 346 (354)
T 2xtz_A 344 RRR 346 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=155.63 Aligned_cols=180 Identities=12% Similarity=0.165 Sum_probs=106.4
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC---ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR---TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~---Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
....+||+|+|.+|||||||+|+|++..+.....+ ++.+.....+.+++.. +.||||||..+.....
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~-------- 95 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPN-------- 95 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----C--------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCH--------
Confidence 35679999999999999999999998877544333 3345666667777754 4569999982110000
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
....+.+......++.++|++|+|+|+++.... ...++..+.
T Consensus 96 ------------------------------------~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~ 137 (239)
T 3lxx_A 96 ------------------------------------AETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKIL 137 (239)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHH
Confidence 000123444555566789999999999865542 223333333
Q ss_pred Hhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524 216 ETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294 (592)
Q Consensus 216 ~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk 294 (592)
+... ....|+|+|+||+|+..... ...++ .. ..+....+++ ..+..|+.+++.
T Consensus 138 ~~~~~~~~~~~iiv~nK~D~~~~~~--------~~~~i----------------~~-~~~~l~~l~~-~~~~~~~~~~~~ 191 (239)
T 3lxx_A 138 KMFGERARSFMILIFTRKDDLGDTN--------LHDYL----------------RE-APEDIQDLMD-IFGDRYCALNNK 191 (239)
T ss_dssp HHHHHHHGGGEEEEEECGGGC-------------------------------------CHHHHHHHH-HHSSSEEECCTT
T ss_pred HHhhhhccceEEEEEeCCccCCccc--------HHHHH----------------Hh-chHHHHHHHH-HcCCEEEEEECC
Confidence 2211 12459999999999875411 00000 00 1234555555 334457777766
Q ss_pred CC-----ccHHHHHHHHHHHHHH
Q psy1524 295 DN-----TNITQVFKELLVQAKV 312 (592)
Q Consensus 295 tg-----~gVeeLf~~Li~~i~~ 312 (592)
.+ .+|.++|+.+.+.+..
T Consensus 192 ~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 192 ATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHH
Confidence 43 6899999988877743
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=1.4e-16 Score=162.00 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=90.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCc-------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKY-------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGA 130 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~-------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~ 130 (592)
...++|+|+|.+|||||||+|+|++.. +...+ .+|+. +.....+..++..+.++||||||+++.....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~--- 82 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS--- 82 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT---
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch---
Confidence 457999999999999999999987554 44444 45555 5555556667777899999999984321100
Q ss_pred cccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-------HHhhh-------------cCC
Q psy1524 131 VLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-------ALSIS-------------SAD 190 (592)
Q Consensus 131 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-------~~~~~-------------~AD 190 (592)
+.+..+. ..|+. ++|
T Consensus 83 ---------------------------------------------~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~ 117 (274)
T 3t5d_A 83 ---------------------------------------------NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQ 117 (274)
T ss_dssp ---------------------------------------------TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCC
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHHHHHHhhcccccccccCCcee
Confidence 1122221 22232 378
Q ss_pred cEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCC
Q psy1524 191 AFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQ 270 (592)
Q Consensus 191 ~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 270 (592)
++++++|.++......-..++..+. . ++|+|+|+||+|+...... .
T Consensus 118 ~~l~~i~~~~~~~~~~d~~~l~~l~----~-~~pvi~V~nK~D~~~~~e~-----------------------------~ 163 (274)
T 3t5d_A 118 CCLYFIAPSGHGLKPLDIEFMKRLH----E-KVNIIPLIAKADTLTPEEC-----------------------------Q 163 (274)
T ss_dssp EEEEEECSCCSSCCHHHHHHHHHHT----T-TSCEEEEESSGGGSCHHHH-----------------------------H
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHh----c-cCCEEEEEeccCCCCHHHH-----------------------------H
Confidence 9999998766432222222333332 2 7899999999998754110 0
Q ss_pred CChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 271 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 271 Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
...+....... ..+++++++||+++.|++++++.|.+.+
T Consensus 164 ~~~~~i~~~l~-~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQ-EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH-HTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH-HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 00112222222 3466789999999999999998887654
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=1.6e-16 Score=159.35 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccC--ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKR--TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~--Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~ 135 (592)
....++|+|+|.+|||||||+|+|++.. +...+.+ ++.+.....+..++.. +.||||||+.+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~--------- 87 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDH--------- 87 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCC---------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCC---------
Confidence 3567999999999999999999999876 5544444 3445666666777754 566999998211000
Q ss_pred CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
.+. ..+.+......+++.+|++|+|||+++.... ...++..+.
T Consensus 88 ----~~~-------------------------------~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~ 130 (260)
T 2xtp_A 88 ----CEA-------------------------------LYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVK 130 (260)
T ss_dssp ----CHH-------------------------------HHHHHHHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHH
T ss_pred ----HHH-------------------------------HHHHHHHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHH
Confidence 000 0011122334467899999999999862211 122333343
Q ss_pred HhhcC-CCCCEEEEEe-CCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC--eE--E
Q psy1524 216 ETKAS-TAVPIVVVGN-KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN--GF--V 289 (592)
Q Consensus 216 ~~~~~-~~~PIILVgN-K~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~--~~--~ 289 (592)
+.... ...|+|+|+| |+|+.... + ...+. ....+++..++...... .+ +
T Consensus 131 ~~~~~~~~~~~i~vv~nK~Dl~~~~--~-------~~~i~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (260)
T 2xtp_A 131 EIFGEDAMGHTIVLFTHKEDLNGGS--L-------MDYMH----------------DSDNKALSKLVAACGGRICAFNNR 185 (260)
T ss_dssp HHHCGGGGGGEEEEEECGGGGTTCC--H-------HHHHH----------------HCCCHHHHHHHHHTTTCEEECCTT
T ss_pred HHhCchhhccEEEEEEcccccCCcc--H-------HHHHH----------------hcchHHHHHHHHHhCCeEEEecCc
Confidence 33111 1346666666 99997430 0 00000 00012233333322111 12 7
Q ss_pred EcccCCCccHHHHHHHHHHHHHHh
Q psy1524 290 EASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 290 EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
++||++|.||+++|+.+.+.+...
T Consensus 186 ~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 186 AEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999988654
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=7.6e-16 Score=165.54 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=100.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC---CCCCCccC--cee-eeEEEEEee-------------C--C----eEEEEEE
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKR--TIE-EMHHEDFSM-------------N--G----VHLKLDI 114 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~--Tt~-d~~~~~v~v-------------d--g----~~v~L~I 114 (592)
...++|+++|..++|||||+++|++. .+.....+ |+. .+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999944 33333333 443 222222211 1 1 1367888
Q ss_pred EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL 194 (592)
Q Consensus 115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl 194 (592)
|||||+ +.|.......+..+|++|+
T Consensus 86 iDtPGh-------------------------------------------------------~~f~~~~~~~~~~~D~~il 110 (408)
T 1s0u_A 86 VDSPGH-------------------------------------------------------ETLMATMLSGASLMDGAIL 110 (408)
T ss_dssp EECSSH-------------------------------------------------------HHHHHHHHTTCSCCSEEEE
T ss_pred EECCCH-------------------------------------------------------HHHHHHHHHhHhhCCEEEE
Confidence 999999 6676666666778899999
Q ss_pred EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH
Q psy1524 195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD 274 (592)
Q Consensus 195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e 274 (592)
|+|+++..........+..+... ...|+|+|+||+|+.+... .....+
T Consensus 111 Vvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~-----------------------------~~~~~~ 158 (408)
T 1s0u_A 111 VIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQ-----------------------------AEENYE 158 (408)
T ss_dssp EEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTT-----------------------------TTTHHH
T ss_pred EEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHH-----------------------------HHHHHH
Confidence 99999754222222222223222 2358999999999976511 112344
Q ss_pred HHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 275 TTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 275 e~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
++..+++.. ...+++++||++|.||+++++.|.+.+
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 555555432 356899999999999999999998765
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.5e-17 Score=154.58 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=83.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCC---CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
...++|+|+|++|||||||+++|++..+.. .+.+++. .+...+.+.||||+|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~---------------- 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGH---------------- 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTC----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCC----------------
Confidence 567899999999999999999999887653 2222222 1113355677999999
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc----CCcEEEEEeCC-CcCCHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS----ADAFILVYAID-DPNSFEEIRLIR 211 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~----AD~iIlVyDvs-d~~Sfe~l~~~l 211 (592)
+.+...+..++.. +|++|+|||++ +..+|..+..|+
T Consensus 102 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 142 (193)
T 2ged_A 102 ---------------------------------------VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 142 (193)
T ss_dssp ---------------------------------------CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred ---------------------------------------chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHH
Confidence 3444444444444 89999999999 889999998888
Q ss_pred HHHHHhh---cCCCCCEEEEEeCCCCccc
Q psy1524 212 DHIFETK---ASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 212 ~~L~~~~---~~~~~PIILVgNK~DL~~~ 237 (592)
..+.... ...++|+++|+||+|+...
T Consensus 143 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 143 VDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 8776543 2357999999999999865
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=1.5e-16 Score=164.42 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=105.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+..+|+|+|.+|||||||+|+|++..+. .....|+.+.....+..++ ..+.||||||+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~---------------- 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHM---------------- 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCH----------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCc----------------
Confidence 4568999999999999999999988653 3344455554444444455 4566799999810
Q ss_pred CchhH-HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524 139 GLDKV-CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET 217 (592)
Q Consensus 139 ~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~ 217 (592)
+.. .+. +.+......++..+|++++|+|+++ -+ ....++....
T Consensus 69 --~~~~~l~-----------------------------~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l-- 112 (301)
T 1ega_A 69 --EEKRAIN-----------------------------RLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKL-- 112 (301)
T ss_dssp --HHHHHHH-----------------------------HHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHH--
T ss_pred --cchhhHH-----------------------------HHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHH--
Confidence 000 000 1111122234778999999999987 33 2233332222
Q ss_pred hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524 218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297 (592)
Q Consensus 218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~ 297 (592)
...+.|+|+|+||+|+.... ....+....+.+......++++||++|.
T Consensus 113 -~~~~~P~ilvlNK~D~~~~~-------------------------------~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 113 -REGKAPVILAVNKVDNVQEK-------------------------------ADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp -HSSSSCEEEEEESTTTCCCH-------------------------------HHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred -HhcCCCEEEEEECcccCccH-------------------------------HHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 23478999999999987520 0112333444442222369999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy1524 298 NITQVFKELLVQAK 311 (592)
Q Consensus 298 gVeeLf~~Li~~i~ 311 (592)
|++++++.+.+.+.
T Consensus 161 ~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 161 NVDTIAAIVRKHLP 174 (301)
T ss_dssp THHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999987663
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.66 E-value=1e-16 Score=167.74 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=91.7
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
++++.++..|+++++++|+|||++ +..++.+...|+..+.......++|+||++||+|+.... ...
T Consensus 178 e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k----i~~ 253 (327)
T 3ohm_A 178 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK----IMY 253 (327)
T ss_dssp HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH----TTT
T ss_pred hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh----hcc
Confidence 899999999999999999999665 667788888888887765444689999999999997641 111
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHh---------hcCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ---------VDWENGFVEASAKDNTNITQVFKELLVQAKVKY 314 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~---------~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~ 314 (592)
..+..++.+. ....++.+++..+.. ....+.+++|||+++.||+++|..+.+.+....
T Consensus 254 ~~l~~~fp~y-----------~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 254 SHLVDYFPEY-----------DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp SCGGGTCTTC-----------CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHhhhchhc-----------cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 1222222211 124577888887742 134556899999999999999999999997653
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=1.3e-16 Score=173.88 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=100.7
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
++...+|+|+|.+|||||||+|+|++..+. ..+..++.+.....+..++. .++||||+|....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDT~G~~~~------------- 84 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIG------------- 84 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS--CCEEECCCC-----------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc--eEEEEECCCCCCc-------------
Confidence 345679999999999999999999987653 44455555555554444554 5667999997110
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE 216 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~ 216 (592)
....++++......++..||++|+|+|+++..+..+ .++..+..
T Consensus 85 ----------------------------------~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~ 128 (456)
T 4dcu_A 85 ----------------------------------DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY 128 (456)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT
T ss_pred ----------------------------------chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH
Confidence 001126777788889999999999999887555443 33333322
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg 296 (592)
..++|+|+|+||+|+..... ....+..... ...+++||++|
T Consensus 129 ---~~~~pvilV~NK~D~~~~~~-----------------------------------~~~e~~~lg~-~~~~~iSA~~g 169 (456)
T 4dcu_A 129 ---RTKKPVVLAVNKLDNTEMRA-----------------------------------NIYDFYSLGF-GEPYPISGTHG 169 (456)
T ss_dssp ---TCCSCEEEEEECC--------------------------------------------CCSGGGSS-SSEEECCTTTC
T ss_pred ---HcCCCEEEEEECccchhhhh-----------------------------------hHHHHHHcCC-CceEEeecccc
Confidence 35789999999999875410 0111112122 24679999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy1524 297 TNITQVFKELLVQAK 311 (592)
Q Consensus 297 ~gVeeLf~~Li~~i~ 311 (592)
.|++++++.+.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTHHHHHHHHHTTGG
T ss_pred cchHHHHHHHHhhcc
Confidence 999999999988764
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.65 E-value=1.1e-15 Score=171.98 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=107.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----CccCc------ee-eeE--EEEEee---CCeEEEEEEEeCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KYKRT------IE-EMH--HEDFSM---NGVHLKLDILDTSGEQ 121 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~~~T------t~-d~~--~~~v~v---dg~~v~L~I~DT~G~~ 121 (592)
+..+|+|+|..++|||||+++|+.. .+.. .+..+ .+ +.. ...+.+ ++..+.++||||||+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh- 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH- 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc-
Confidence 4579999999999999999999852 2211 11111 01 111 111222 566789999999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
+.|......++..+|++|+|+|+++.
T Consensus 82 ------------------------------------------------------~dF~~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 82 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp ------------------------------------------------------GGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 77888888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~ 281 (592)
.++.....|...+. .++|+|+|+||+|+...+ ..+...++..
T Consensus 108 v~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~---------------------------------~~~v~~ei~~ 149 (599)
T 3cb4_D 108 VEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD---------------------------------PERVAEEIED 149 (599)
T ss_dssp CCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC---------------------------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc---------------------------------HHHHHHHHHH
Confidence 88888777766542 368999999999997541 1122233333
Q ss_pred hcC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 282 VDW--ENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 282 ~~~--~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
... ...++++||++|.||+++|+.+++.+
T Consensus 150 ~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 150 IVGIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 211 12489999999999999999998876
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.65 E-value=1.5e-15 Score=170.66 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=109.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----ccC----------cee-eeEEEEEee-CCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK-----YKR----------TIE-EMHHEDFSM-NGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~-----~~~----------Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~ 120 (592)
....+|+|+|..++|||||+++|+.. .+... +.. |+. ......+.. ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 35679999999999999999999852 22111 000 111 011111121 566789999999999
Q ss_pred CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD 200 (592)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd 200 (592)
+.|......++..+|++|+|+|+++
T Consensus 84 -------------------------------------------------------~dF~~ev~r~l~~aD~aILVVDa~~ 108 (600)
T 2ywe_A 84 -------------------------------------------------------VDFSYEVSRALAACEGALLLIDASQ 108 (600)
T ss_dssp -------------------------------------------------------GGGHHHHHHHHHTCSEEEEEEETTT
T ss_pred -------------------------------------------------------HhHHHHHHHHHHhCCEEEEEEECCC
Confidence 7787778888999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH
Q psy1524 201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280 (592)
Q Consensus 201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la 280 (592)
..++.....|...+. .++|+|+|+||+|+...+ ..+...++.
T Consensus 109 gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~---------------------------------~~~v~~el~ 150 (600)
T 2ywe_A 109 GIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD---------------------------------VDRVKKQIE 150 (600)
T ss_dssp BCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC---------------------------------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC---------------------------------HHHHHHHHH
Confidence 999888877766442 368999999999997541 111223333
Q ss_pred hhcCCC---eEEEcccCCCccHHHHHHHHHHHH
Q psy1524 281 QVDWEN---GFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 281 ~~~~~~---~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
. ..+. .++++||++|.||+++|+.+++.+
T Consensus 151 ~-~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 151 E-VLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp H-TSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred H-hhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 3 2222 489999999999999999998876
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=5.3e-16 Score=170.44 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=77.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg 107 (592)
...+||+|+|.+|||||||+++|+.. .+... ....+.+.....+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 45799999999999999999999854 11110 0111222223333333
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
.+.+.||||||+ ++|......++.
T Consensus 110 -~~~~~iiDTPG~-------------------------------------------------------~~f~~~~~~~~~ 133 (483)
T 3p26_A 110 -RANFTIVDAPGH-------------------------------------------------------RDFVPNAIMGIS 133 (483)
T ss_dssp -SCEEEEECCCCC-------------------------------------------------------GGGHHHHHHHHT
T ss_pred -CceEEEEECCCc-------------------------------------------------------HHHHHHHHHhhh
Confidence 456777999999 788888888999
Q ss_pred cCCcEEEEEeCCCcCCHHHH------HHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 188 SADAFILVYAIDDPNSFEEI------RLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l------~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.+|++|+|+|+++..++..+ ...+..+.. ....|+|||+||+|+.+.
T Consensus 134 ~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 134 QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp TCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred hCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccc
Confidence 99999999999987654331 222222222 223579999999999763
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=169.05 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=89.1
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCcc--------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYK--------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~--------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~ 129 (592)
...++|+|+|++|||||||+|+|.+. .+...+. +|+. +.....+..++..+.+++|||+|+++....
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~--- 111 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC--- 111 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCcc---
Confidence 45689999999999999999998754 3433332 3443 333333445677788999999999321100
Q ss_pred ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-------HhhhcCCc-----------
Q psy1524 130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-------LSISSADA----------- 191 (592)
Q Consensus 130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-------~~~~~AD~----------- 191 (592)
.+.|..+.. .|+..+++
T Consensus 112 ---------------------------------------------~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv 146 (361)
T 2qag_A 112 ---------------------------------------------RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRV 146 (361)
T ss_dssp -------------------------------------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCC
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCce
Confidence 022222222 44444443
Q ss_pred EEEEEeCCC-cCCHHHHHH-HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCC
Q psy1524 192 FILVYAIDD-PNSFEEIRL-IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD 269 (592)
Q Consensus 192 iIlVyDvsd-~~Sfe~l~~-~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 269 (592)
.++||++++ ..++..+.. ++..+ ..++|+|+|+||+|+... +
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~-------------------------------~ 190 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL-------------------------------K 190 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH-------------------------------H
T ss_pred EEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH-------------------------------H
Confidence 357777776 566766653 32222 357899999999999765 2
Q ss_pred CCCh--HHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 270 QVPY--DTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 270 ~Vs~--ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
.+.. +++..++. ..+++++++||++|.| ++.|..+++.+...
T Consensus 191 ev~~~k~~i~~~~~-~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 191 ERERLKKRILDEIE-EHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHTT-CC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 2222 34555554 4567899999999999 99999999888543
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.65 E-value=1.4e-15 Score=163.43 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcC---CCCCCccC--cee-eeEEEEEee-------------C--C----eEEEE
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKR--TIE-EMHHEDFSM-------------N--G----VHLKL 112 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~--Tt~-d~~~~~v~v-------------d--g----~~v~L 112 (592)
.+...++|+++|..++|||||+++|++. .+.....+ |+. .+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999999944 23333333 433 222222211 1 1 13678
Q ss_pred EEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcE
Q psy1524 113 DILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAF 192 (592)
Q Consensus 113 ~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~i 192 (592)
.||||||+ +.|.......+..+|++
T Consensus 86 ~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~~~D~~ 110 (410)
T 1kk1_A 86 SFIDAPGH-------------------------------------------------------EALMTTMLAGASLMDGA 110 (410)
T ss_dssp EEEECSSH-------------------------------------------------------HHHHHHHHHCGGGCSEE
T ss_pred EEEECCCh-------------------------------------------------------HHHHHHHHhhhhhCCEE
Confidence 88999999 66766666677889999
Q ss_pred EEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC
Q psy1524 193 ILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272 (592)
Q Consensus 193 IlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs 272 (592)
|+|+|+++..........+..+... ...|+|+|+||+|+.+.+.. ...
T Consensus 111 ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~-----------------------------~~~ 158 (410)
T 1kk1_A 111 ILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKA-----------------------------LEN 158 (410)
T ss_dssp EEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHH-----------------------------HHH
T ss_pred EEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHH-----------------------------HHH
Confidence 9999999754222222222223222 23589999999999864210 011
Q ss_pred hHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 273 YDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 273 ~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.++...+++. ....+++++||++|.||++|++.|.+.+
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2334444432 1356899999999999999999988765
No 156
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.64 E-value=5.1e-16 Score=163.16 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=90.3
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
++++.++..|+++++++|+|||++ +..++.+...|+..+.......++|+|||+||+|+....- ..
T Consensus 172 e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki----~~ 247 (340)
T 4fid_A 172 RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKL----TK 247 (340)
T ss_dssp HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHH----HH
T ss_pred ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhc----Cc
Confidence 999999999999999999999999 7788999988888887764456899999999999976411 00
Q ss_pred CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC--------------------------CCeEEEcccCCCccH
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW--------------------------ENGFVEASAKDNTNI 299 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~--------------------------~~~~~EvSAktg~gV 299 (592)
..+..++.+ .....+.+++..+..... .+.+++|||+++.||
T Consensus 248 ~~l~~~fp~------------y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 248 VPLNTIFPE------------YTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp SCGGGTCTT------------CCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred chHHHhhhh------------hcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 111111111 112235677765543322 356899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1524 300 TQVFKELLVQAKV 312 (592)
Q Consensus 300 eeLf~~Li~~i~~ 312 (592)
+.+|..+.+.|..
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=9.1e-16 Score=168.64 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC-------CCCCccC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAV 131 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~ 131 (592)
+..++|+++|..++|||||+++|++.. +.....+ .+.+.....+.+++ ..+.||||||+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh----------- 83 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGH----------- 83 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSH-----------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCCh-----------
Confidence 567999999999999999999999765 2222222 22232223345566 45667999999
Q ss_pred ccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH
Q psy1524 132 LWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR 211 (592)
Q Consensus 132 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l 211 (592)
+.|......++..+|++|+|+|+++...-.. ..++
T Consensus 84 --------------------------------------------~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l 118 (482)
T 1wb1_A 84 --------------------------------------------ADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHM 118 (482)
T ss_dssp --------------------------------------------HHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHH
T ss_pred --------------------------------------------HHHHHHHHHHHhhCCEEEEEEecCCCccHHH-HHHH
Confidence 7777777788999999999999998432221 1222
Q ss_pred HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---CCCeE
Q psy1524 212 DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---WENGF 288 (592)
Q Consensus 212 ~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---~~~~~ 288 (592)
..+.. .++|+|+|+||+|+.+... .....++...+++.. ...++
T Consensus 119 ~~~~~----~~ip~IvviNK~Dl~~~~~-----------------------------~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 119 LILDH----FNIPIIVVITKSDNAGTEE-----------------------------IKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHH----TTCCBCEEEECTTSSCHHH-----------------------------HHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHH----cCCCEEEEEECCCcccchh-----------------------------HHHHHHHHHHHHhhhcccccceE
Confidence 22322 3688899999999975311 001123334443322 25689
Q ss_pred EEcccCCCccHHHHHHHHHHHHH
Q psy1524 289 VEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 289 ~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
+++||++|.||+++++.|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998874
No 158
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.63 E-value=1.5e-15 Score=162.87 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=88.1
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
++|+.++..|+++++++|+|||+++ ..+|+++..|+..+.......++|+||||||+||....-. ...
T Consensus 228 e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~--~~~ 305 (402)
T 1azs_C 228 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVL--AGK 305 (402)
T ss_dssp GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHH--HCS
T ss_pred hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhc--ccc
Confidence 8999999999999999999999999 8999999999999877544568999999999999654110 000
Q ss_pred CCcccccCCCCCccccccC-CCCCCCCChHHHHHHH-----hh-------cCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 246 GPFQTYLSGLPDSVCAHQI-SGTPDQVPYDTTESVV-----QV-------DWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~-~~~~r~Vs~ee~~~la-----~~-------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
..+..++.+...-..+... .......+.+++..++ +. ...+.+++|||+++.||+++|..+.+.+..
T Consensus 306 ~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 306 SKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp SCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 0011111100000000000 0000001245565553 21 124557899999999999999999888865
Q ss_pred h
Q psy1524 313 K 313 (592)
Q Consensus 313 ~ 313 (592)
.
T Consensus 386 ~ 386 (402)
T 1azs_C 386 M 386 (402)
T ss_dssp H
T ss_pred H
Confidence 4
No 159
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=9.8e-16 Score=156.12 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=64.5
Q ss_pred chhHHHHHhhhcCCcEE-EEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524 177 EFPAMRALSISSADAFI-LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL 255 (592)
Q Consensus 177 ~~~~l~~~~~~~AD~iI-lVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~ 255 (592)
.+..+...|+..++.+| +|+|+++..+......++..+ ...+.|+|+|+||+|+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~----~~~~~~~i~V~NK~Dl~~~~----------------- 208 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDEG----------------- 208 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCTT-----------------
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh----CCCCCeEEEEEEccccCCCC-----------------
Confidence 56677778888888776 799998765444433344333 23578999999999997651
Q ss_pred CCccccccCCCCCCCCChHHHHHH-Hhhc-CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 256 PDSVCAHQISGTPDQVPYDTTESV-VQVD-WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 256 ~~~~~~~~~~~~~r~Vs~ee~~~l-a~~~-~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
....+..... .... ...+++++||++|.|++++|+.+.+..
T Consensus 209 --------------~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 209 --------------TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp --------------CCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred --------------chHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 1111111110 0000 123688999999999999999998743
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.63 E-value=2.7e-17 Score=182.61 Aligned_cols=158 Identities=26% Similarity=0.311 Sum_probs=109.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
+.++|+|+|.+|+|||||+++|++..+...+.+++. +.....+.+ ++. .++||||||+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGh------------------ 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGH------------------ 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSS------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCCh------------------
Confidence 457899999999999999999997766544444443 333333333 333 4567999999
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
+.|..++..++..+|++|+|||+++.........+ ..+.
T Consensus 63 -------------------------------------e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~--- 101 (537)
T 3izy_P 63 -------------------------------------AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAK--- 101 (537)
T ss_dssp -------------------------------------CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHH---
T ss_pred -------------------------------------HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHH---
Confidence 66666666678899999999999997776554433 2232
Q ss_pred cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH---Hh-hcCCCeEEEcccC
Q psy1524 219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV---VQ-VDWENGFVEASAK 294 (592)
Q Consensus 219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l---a~-~~~~~~~~EvSAk 294 (592)
..++|+|+|+||+|+...+. ..+. .+...+ +. .....+++++||+
T Consensus 102 -~~~vPiIVViNKiDl~~~~~-----------------------------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 102 -DAHVPIVLAINKCDKAEADP-----------------------------EKVK-KELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp -TTTCCEEECCBSGGGTTTSC-----------------------------CSSS-SHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred -HcCCcEEEEEecccccccch-----------------------------HHHH-HHHHhhhhhHHhcCCCceEEEEECC
Confidence 34789999999999975411 0111 111111 01 1124579999999
Q ss_pred CCccHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQA 310 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i 310 (592)
+|.||+++|+.+...+
T Consensus 151 tG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 151 TGENMMALAEATIALA 166 (537)
T ss_dssp SSCSSHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHhh
Confidence 9999999999998776
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=4.1e-15 Score=149.21 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=103.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC-cc--CceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YK--RTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK 136 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~-~~--~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~ 136 (592)
...++|+|+|.+|||||||+|+|++..+... +. +++.......+..++.. +.||||||..+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~----------- 85 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTPDIFSSQV----------- 85 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE--EEEEECCSCSSTTH-----------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE--EEEEECCCCCCCCC-----------
Confidence 5679999999999999999999998766432 22 24445555566677755 55699999821100
Q ss_pred CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcch-hHHHH---HhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524 137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF-PAMRA---LSISSADAFILVYAIDDPNSFEEIRLIRD 212 (592)
Q Consensus 137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~l~~---~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~ 212 (592)
...+++ ..+.. ....++|++|+|+|+++. +. ....++.
T Consensus 86 ------------------------------------~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~-~~-~~~~~~~ 127 (247)
T 3lxw_A 86 ------------------------------------SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF-TA-QDQQAVR 127 (247)
T ss_dssp ------------------------------------HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC-CH-HHHHHHH
T ss_pred ------------------------------------CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-CH-HHHHHHH
Confidence 000112 22222 224899999999999852 22 2223344
Q ss_pred HHHHhhc--CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEE
Q psy1524 213 HIFETKA--STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290 (592)
Q Consensus 213 ~L~~~~~--~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~E 290 (592)
.+.+... ..+.|+|||+||+|+...+. ..++ .....+....+.+ ..+..|+.
T Consensus 128 ~l~~~~~~~~~~~~iilv~nK~Dl~~~~~---------~~~l----------------~~~~~~~l~~l~~-~~g~~~~~ 181 (247)
T 3lxw_A 128 QVRDMFGEDVLKWMVIVFTRKEDLAGGSL---------HDYV----------------SNTENRALRELVA-ECGGRVCA 181 (247)
T ss_dssp HHHHHHCGGGGGGEEEEEECGGGGTTCCH---------HHHH----------------HHCCCHHHHHHHH-HTTTCEEE
T ss_pred HHHHHhChhhhccEEEEEEchHhcCCCCH---------HHHH----------------hhcccHHHHHHHH-HcCCeEEE
Confidence 4444322 12679999999999965310 0000 0001123444444 33444655
Q ss_pred cccCC-----CccHHHHHHHHHHHHHH
Q psy1524 291 ASAKD-----NTNITQVFKELLVQAKV 312 (592)
Q Consensus 291 vSAkt-----g~gVeeLf~~Li~~i~~ 312 (592)
++++. +.||++|++.+.+.+..
T Consensus 182 ~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 182 FDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 55544 68999999999888754
No 162
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.62 E-value=3.3e-15 Score=162.31 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=101.6
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----------------------------c-cCceeeeEEEEEeeC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK-----------------------------Y-KRTIEEMHHEDFSMN 106 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~-----------------------------~-~~Tt~d~~~~~v~vd 106 (592)
....++|+++|.+|+|||||+++|+.. .+... . ...+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 356799999999999999999999643 11111 1 112224444445555
Q ss_pred CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh
Q psy1524 107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI 186 (592)
Q Consensus 107 g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 186 (592)
+ ..+.||||||+ ++|......++
T Consensus 94 ~--~~~~iiDTPGh-------------------------------------------------------~~f~~~~~~~~ 116 (439)
T 3j2k_7 94 K--KHFTILDAPGH-------------------------------------------------------KSFVPNMIGGA 116 (439)
T ss_pred C--eEEEEEECCCh-------------------------------------------------------HHHHHHHHhhH
Confidence 5 46677999999 77888888889
Q ss_pred hcCCcEEEEEeCCCcCC---HH---HHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCcc
Q psy1524 187 SSADAFILVYAIDDPNS---FE---EIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSV 259 (592)
Q Consensus 187 ~~AD~iIlVyDvsd~~S---fe---~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~ 259 (592)
..||++|+|+|+++... |+ .....+..+.. .++| +|+|+||+|+...+... ..
T Consensus 117 ~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~--------~~-------- 176 (439)
T 3j2k_7 117 SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSN--------ER-------- 176 (439)
T ss_pred hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHH--------HH--------
Confidence 99999999999998642 22 12222222222 2566 99999999996421000 00
Q ss_pred ccccCCCCCCCCChHHHHHHHhhcC-----CCeEEEcccCCCccHHHHHH
Q psy1524 260 CAHQISGTPDQVPYDTTESVVQVDW-----ENGFVEASAKDNTNITQVFK 304 (592)
Q Consensus 260 ~~~~~~~~~r~Vs~ee~~~la~~~~-----~~~~~EvSAktg~gVeeLf~ 304 (592)
.....++...+++... ..+++++||++|.||+++++
T Consensus 177 ---------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 177 ---------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ---------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 0011122333332111 45799999999999999766
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.60 E-value=3.7e-15 Score=160.01 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=81.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--------CCCCC----------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--------TFSPK----------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--------~f~~~----------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~ 121 (592)
...++|+++|.+|+|||||+++|++. .+... ....+.+.....+..++ ..+.||||||+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~- 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGH- 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCS-
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCCh-
Confidence 45689999999999999999999963 22210 01112223222333333 55677999999
Q ss_pred CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP 201 (592)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~ 201 (592)
++|......++..+|++|+|+|+++.
T Consensus 86 ------------------------------------------------------~~f~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 86 ------------------------------------------------------ADYIKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp ------------------------------------------------------GGGHHHHHHHHTTCSSEEEEEETTTC
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 77777778889999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524 202 NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD 236 (592)
Q Consensus 202 ~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~ 236 (592)
... ....++..+... ++| +|+|+||+|+..
T Consensus 112 ~~~-qt~~~l~~~~~~----~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 112 PMP-QTREHILLARQV----GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CCH-HHHHHHHHHHHT----TCCCEEEEEECGGGCC
T ss_pred CcH-HHHHHHHHHHHc----CCCEEEEEEECccccC
Confidence 654 344555555442 677 899999999974
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.59 E-value=4.7e-15 Score=142.70 Aligned_cols=169 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
....+|+|+|++|||||||+|+|++..+...+.++.+. .....+.+++ .+.+|||+|+..... +.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~----------~~- 89 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV----------PE- 89 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc----------CH-
Confidence 34579999999999999999999987754444444442 2223334444 355699999821000 00
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh---hcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI---SSADAFILVYAIDDPNSFEEIRLIRDHIF 215 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~---~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~ 215 (592)
...+.+......++ ..++++++|+|+++..++.... ....+.
T Consensus 90 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~ 134 (210)
T 1pui_A 90 ----------------------------------EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWAV 134 (210)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHH-HHHHHH
Confidence 00022333333344 4689999999999887764321 222222
Q ss_pred HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccC
Q psy1524 216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAK 294 (592)
Q Consensus 216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAk 294 (592)
. .++|+++|+||+|+..... ++...+.+..++... ....++++||+
T Consensus 135 ~----~~~~~~~v~nK~D~~s~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 135 D----SNIAVLVLLTKADKLASGA-----------------------------RKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp H----TTCCEEEEEECGGGSCHHH-----------------------------HHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred H----cCCCeEEEEecccCCCchh-----------------------------HHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 2 3689999999999875411 111123444444322 23568899999
Q ss_pred CCccHHHHHHHHHHHH
Q psy1524 295 DNTNITQVFKELLVQA 310 (592)
Q Consensus 295 tg~gVeeLf~~Li~~i 310 (592)
++.|++++++.+.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWF 197 (210)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988765
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=1.2e-14 Score=161.34 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=82.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC------------------CCCCC-----ccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN------------------TFSPK-----YKRTIEEMHHEDFSMNGVHLKLDILDT 117 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~------------------~f~~~-----~~~Tt~d~~~~~v~vdg~~v~L~I~DT 117 (592)
...+|+|+|.+|||||||+++|+.. .+.+. ....+.......+..++ +.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4579999999999999999999611 11000 01111122223344454 56777999
Q ss_pred CCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe
Q psy1524 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA 197 (592)
Q Consensus 118 ~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD 197 (592)
||+ +.|......+++.+|++|+|+|
T Consensus 90 PG~-------------------------------------------------------~df~~~~~~~l~~aD~allVvD 114 (528)
T 3tr5_A 90 PGH-------------------------------------------------------ADFTEDTYRTLTAVDSALMVID 114 (528)
T ss_dssp CCS-------------------------------------------------------TTCCHHHHHGGGGCSEEEEEEE
T ss_pred CCc-------------------------------------------------------hhHHHHHHHHHHhCCEEEEEEe
Confidence 999 6677778888999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 198 IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 198 vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+++..+......| ..+.. .++|+|+|+||+|+...
T Consensus 115 a~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 115 AAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred CCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence 9998887776644 33333 37899999999999754
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.57 E-value=1.2e-15 Score=165.43 Aligned_cols=162 Identities=21% Similarity=0.247 Sum_probs=102.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCc------------------------------cCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKY------------------------------KRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~------------------------------~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..|+|||||+++|+.. .+.... ...+.+.....+. .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--T 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--C
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--c
Confidence 35689999999999999999999864 333111 1111122222233 3
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
..+.+.||||||+ ++|......++.
T Consensus 82 ~~~~~~iiDtpG~-------------------------------------------------------~~f~~~~~~~~~ 106 (435)
T 1jny_A 82 KKYFFTIIDAPGH-------------------------------------------------------RDFVKNMITGAS 106 (435)
T ss_dssp SSCEEEECCCSSS-------------------------------------------------------TTHHHHHHHTSS
T ss_pred CCeEEEEEECCCc-------------------------------------------------------HHHHHHHHhhhh
Confidence 3356778999999 778878888899
Q ss_pred cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh---cCCC-CCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETK---ASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ 263 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~---~~~~-~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (592)
.+|++|+|||+++ .+|+.+..|..+..++. ...+ .|+|+|+||+|+.+.+... ..
T Consensus 107 ~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~--------~~------------ 165 (435)
T 1jny_A 107 QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE--------KR------------ 165 (435)
T ss_dssp CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH--------HH------------
T ss_pred hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH--------HH------------
Confidence 9999999999998 77876543322222211 1123 4699999999997631000 00
Q ss_pred CCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524 264 ISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK 304 (592)
Q Consensus 264 ~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~ 304 (592)
.....++...+++... ..+++++||++|.||.++++
T Consensus 166 -----~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 166 -----YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp -----HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred -----HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 0011234445544322 36799999999999987654
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.57 E-value=2.3e-15 Score=169.31 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=76.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cCceeeeEEEEE-------------eeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----KRTIEEMHHEDF-------------SMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----~~Tt~d~~~~~v-------------~vdg~~v~L~I~DT~G~~~ 122 (592)
.+.++|+|+|.+|+|||||+++|++..+.+.. ..+++..+...- .++.....++||||||+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh-- 80 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH-- 80 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT--
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc--
Confidence 34579999999999999999999976554322 123222111100 00011124778999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC--
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD-- 200 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd-- 200 (592)
+.|..++..++..+|++|+|||+++
T Consensus 81 -----------------------------------------------------e~F~~~~~r~~~~aD~aILVvDa~~Gv 107 (594)
T 1g7s_A 81 -----------------------------------------------------EAFTTLRKRGGALADLAILIVDINEGF 107 (594)
T ss_dssp -----------------------------------------------------SCCTTSBCSSSBSCSEEEEEEETTTCC
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence 5555555556788999999999999
Q ss_pred -cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 201 -PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 201 -~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+.+++.+. .+.. .++|+|+|+||+|+...
T Consensus 108 ~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 108 KPQTQEALN----ILRM----YRTPFVVAANKIDRIHG 137 (594)
T ss_dssp CHHHHHHHH----HHHH----TTCCEEEEEECGGGSTT
T ss_pred cHhHHHHHH----HHHH----cCCeEEEEecccccccc
Confidence 44444433 2322 37899999999999753
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=7.6e-15 Score=159.06 Aligned_cols=158 Identities=21% Similarity=0.134 Sum_probs=100.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCC----------ccCcee----------------------eeEEEEEee
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPK----------YKRTIE----------------------EMHHEDFSM 105 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~----------~~~Tt~----------------------d~~~~~v~v 105 (592)
...++|+++|..|+|||||+++|+... +... ..+|++ +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998553 1111 112221 111122222
Q ss_pred CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS 185 (592)
Q Consensus 106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 185 (592)
++ ..+.||||||+ +.|......+
T Consensus 102 ~~--~~~~iiDtpGh-------------------------------------------------------~~f~~~~~~~ 124 (434)
T 1zun_B 102 AK--RKFIIADTPGH-------------------------------------------------------EQYTRNMATG 124 (434)
T ss_dssp SS--EEEEEEECCCS-------------------------------------------------------GGGHHHHHHH
T ss_pred CC--ceEEEEECCCh-------------------------------------------------------HHHHHHHHHH
Confidence 33 56778999999 7787777788
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
+..+|++|+|+|+++..... ...++..+... ...|+|+|+||+|+.+.+...
T Consensus 125 ~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~------------------------ 176 (434)
T 1zun_B 125 ASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERV------------------------ 176 (434)
T ss_dssp HTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH------------------------
T ss_pred HhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH------------------------
Confidence 99999999999999876433 33444434332 123699999999997531000
Q ss_pred CCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFKE 305 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~~ 305 (592)
.....++...+++... ..+++++||++|.||+++|+.
T Consensus 177 ---~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 177 ---FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp ---HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred ---HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 0001233444444222 267999999999999986543
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=8.5e-15 Score=155.76 Aligned_cols=149 Identities=7% Similarity=0.025 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV 143 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~ 143 (592)
+|+++|.+++|||||+++|+ ....|+ +.....+..++. .++||||||+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi-~~~~~~~~~~~~--~i~iiDtPGh----------------------- 70 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS-DITMYNNDKEGR--NMVFVDAHSY----------------------- 70 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES-SSEEEEECSSSS--EEEEEECTTT-----------------------
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE-EeeEEEEecCCe--EEEEEECCCh-----------------------
Confidence 99999999999999999998 112222 333344444554 4677999999
Q ss_pred HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223 (592)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~ 223 (592)
++|.......+..+|++|+|+| + ...+.....++..+... ++
T Consensus 71 --------------------------------~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~----~i 112 (370)
T 2elf_A 71 --------------------------------PKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL----GF 112 (370)
T ss_dssp --------------------------------TTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT----TC
T ss_pred --------------------------------HHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc----CC
Confidence 6676666677899999999999 4 44556666666655443 56
Q ss_pred CE-EEEEe-CCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEE--cccCC--
Q psy1524 224 PI-VVVGN-KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVE--ASAKD-- 295 (592)
Q Consensus 224 PI-ILVgN-K~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~E--vSAkt-- 295 (592)
|. |+|+| |+|+ +... . ....++...+++.. ...++++ +||++
T Consensus 113 ~~~ivvvNNK~Dl-~~~~-~----------------------------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 113 KHGIIALTRSDST-HMHA-I----------------------------DELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp CEEEEEECCGGGS-CHHH-H----------------------------HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred CeEEEEEEeccCC-CHHH-H----------------------------HHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 77 89999 9999 4310 0 00013344444322 2468999 99999
Q ss_pred -CccHHHHHHHHHHHHHH
Q psy1524 296 -NTNITQVFKELLVQAKV 312 (592)
Q Consensus 296 -g~gVeeLf~~Li~~i~~ 312 (592)
|.||+++++.|.+.+..
T Consensus 163 ~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 163 PFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccc
Confidence 99999999999888743
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.56 E-value=1.1e-14 Score=156.12 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=104.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC-------CCCCC----------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN-------TFSPK----------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~-------~f~~~----------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~ 123 (592)
..+||+++|..++|||||+++|++. .+... ....+.+... +.++.....+.||||||+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~--~~~~~~~~~~~iiDtpG~--- 76 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--VEYSTAARHYAHTDCPGH--- 76 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEE--EEEECSSCEEEEEECSSH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeee--EEeccCCeEEEEEECCCh---
Confidence 3589999999999999999999963 11110 0111112222 223333356677999999
Q ss_pred CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS 203 (592)
Q Consensus 124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S 203 (592)
++|......++..+|++|+|+|+++...
T Consensus 77 ----------------------------------------------------~~f~~~~~~~~~~aD~~ilVvda~~g~~ 104 (397)
T 1d2e_A 77 ----------------------------------------------------ADYVKNMITGTAPLDGCILVVAANDGPM 104 (397)
T ss_dssp ----------------------------------------------------HHHHHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred ----------------------------------------------------HHHHHHHHhhHhhCCEEEEEEECCCCCC
Confidence 7777777778899999999999998765
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524 204 FEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV 282 (592)
Q Consensus 204 fe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~ 282 (592)
..... ++..+.. .++| +|+|+||+|+.++.... ....++...+++.
T Consensus 105 ~qt~e-~l~~~~~----~~vp~iivviNK~Dl~~~~~~~----------------------------~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 105 PQTRE-HLLLARQ----IGVEHVVVYVNKADAVQDSEMV----------------------------ELVELEIRELLTE 151 (397)
T ss_dssp HHHHH-HHHHHHH----TTCCCEEEEEECGGGCSCHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHH----cCCCeEEEEEECcccCCCHHHH----------------------------HHHHHHHHHHHHH
Confidence 44433 3333433 2678 78999999997421000 0012334444443
Q ss_pred cC----CCeEEEcccCCCcc----------HHHHHHHHHHHH
Q psy1524 283 DW----ENGFVEASAKDNTN----------ITQVFKELLVQA 310 (592)
Q Consensus 283 ~~----~~~~~EvSAktg~g----------VeeLf~~Li~~i 310 (592)
.. ..+++++||++|.| |+++|+.+.+.+
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 22 36899999999875 888888887655
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.3e-15 Score=168.64 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=98.2
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CC------------------------------ccCceeeeEEEEEeeC
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PK------------------------------YKRTIEEMHHEDFSMN 106 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~------------------------------~~~Tt~d~~~~~v~vd 106 (592)
....+||+|+|.+|||||||+++|+..... .. ...++.+.....+..+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345799999999999999999999965321 10 0122223333334444
Q ss_pred CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh
Q psy1524 107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI 186 (592)
Q Consensus 107 g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 186 (592)
+ +.+.||||||+ ++|......++
T Consensus 244 ~--~~~~iiDTPG~-------------------------------------------------------e~f~~~~~~~~ 266 (611)
T 3izq_1 244 R--ANFTIVDAPGH-------------------------------------------------------RDFVPNAIMGI 266 (611)
T ss_dssp S--CEEEEEECCSS-------------------------------------------------------SCHHHHHTTTS
T ss_pred C--ceEEEEECCCC-------------------------------------------------------cccHHHHHHHH
Confidence 4 45677999999 77777777788
Q ss_pred hcCCcEEEEEeCCCcC---CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524 187 SSADAFILVYAIDDPN---SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ 263 (592)
Q Consensus 187 ~~AD~iIlVyDvsd~~---Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (592)
..||++|+|+|+++.. +|.....+...+.........|+|||+||+|+.+.....
T Consensus 267 ~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~---------------------- 324 (611)
T 3izq_1 267 SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR---------------------- 324 (611)
T ss_dssp SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH----------------------
T ss_pred hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH----------------------
Confidence 9999999999998742 111111111111111111234599999999997631000
Q ss_pred CCCCCCCCChHHHHHHHhhc-C---CCeEEEcccCCCccHHHHH
Q psy1524 264 ISGTPDQVPYDTTESVVQVD-W---ENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 264 ~~~~~r~Vs~ee~~~la~~~-~---~~~~~EvSAktg~gVeeLf 303 (592)
.....++...++... . ..++++|||++|.||+++.
T Consensus 325 -----~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 325 -----FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp -----HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred -----HHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 000012222222211 1 4689999999999999873
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.56 E-value=4.2e-16 Score=171.71 Aligned_cols=156 Identities=27% Similarity=0.369 Sum_probs=101.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG 139 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~ 139 (592)
+..+|+++|..++|||||+++|.+..+.....+++. +.....+..++. .++||||||+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGh------------------- 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGH------------------- 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTT-------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCc-------------------
Confidence 457999999999999999999997655433322222 222223344554 4566999999
Q ss_pred chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524 140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE 216 (592)
Q Consensus 140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~ 216 (592)
+.|..++..++..+|++|+|||+++. .+++.+. .+..
T Consensus 62 ------------------------------------e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~ 101 (501)
T 1zo1_I 62 ------------------------------------AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA 101 (501)
T ss_dssp ------------------------------------TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH
T ss_pred ------------------------------------HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh
Confidence 55555555567889999999999884 4444332 2222
Q ss_pred hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcCCCeEEEcccCC
Q psy1524 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDWENGFVEASAKD 295 (592)
Q Consensus 217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAkt 295 (592)
.++|+|+|+||+|+...+.. .....+... .. ++. .....+++++||++
T Consensus 102 ----~~vPiIVviNKiDl~~~~~~------~v~~~l~~~--------------~~-------~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 102 ----AQVPVVVAVNKIDKPEADPD------RVKNELSQY--------------GI-------LPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp ----TTCCEEEEEECSSSSTTCCC------CTTCCCCCC--------------CC-------CTTCCSSSCEEEECCTTT
T ss_pred ----cCceEEEEEEeccccccCHH------HHHHHHHHh--------------hh-------hHHHhCCCccEEEEeeee
Confidence 36899999999999754110 000001000 00 001 01246899999999
Q ss_pred CccHHHHHHHHHH
Q psy1524 296 NTNITQVFKELLV 308 (592)
Q Consensus 296 g~gVeeLf~~Li~ 308 (592)
|.||+++|+.++.
T Consensus 151 G~gI~eLle~I~~ 163 (501)
T 1zo1_I 151 GTGIDELLDAILL 163 (501)
T ss_dssp CTTCTTHHHHTTT
T ss_pred ccCcchhhhhhhh
Confidence 9999999998864
No 173
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.56 E-value=6e-16 Score=159.94 Aligned_cols=135 Identities=21% Similarity=0.134 Sum_probs=107.1
Q ss_pred HHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCcc
Q psy1524 77 SIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMA 155 (592)
Q Consensus 77 SLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (592)
+|+.+|+.+.|. +.+.+|+++.+...+..++ .+++||| +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--q----------------------------------- 71 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--L----------------------------------- 71 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--C-----------------------------------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--c-----------------------------------
Confidence 799999999998 8999999987765443333 5678999 6
Q ss_pred ccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524 156 YKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234 (592)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL 234 (592)
++|+.++..+++++|++|+|||++++. +|..+..|+..+.. .++|+|||+||+||
T Consensus 72 --------------------er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL 127 (301)
T 1u0l_A 72 --------------------HRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDL 127 (301)
T ss_dssp --------------------CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred --------------------cccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHc
Confidence 778888888999999999999999997 79999999887754 37899999999999
Q ss_pred cccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-CeEEEcccCCCccHHHHHHHHHH
Q psy1524 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-NGFVEASAKDNTNITQVFKELLV 308 (592)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-~~~~EvSAktg~gVeeLf~~Li~ 308 (592)
.++ +.+ +++..+++.... ..+++|||++|.||+++|..+..
T Consensus 128 ~~~-------------------------------~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 128 YDE-------------------------------DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCH-------------------------------HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCc-------------------------------hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 754 111 334444442221 78999999999999999987653
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=4.3e-14 Score=142.67 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=85.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...++|+|+|.+|||||||+|+|++..+ ...+.+++.+.....+..++. .+.||||||+.+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~------------ 99 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGY------------ 99 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTE------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCccc------------
Confidence 4579999999999999999999998764 455666666666666777775 566699999921100
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHH-HHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEI-RLIRDHI 214 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L 214 (592)
..+.+......++ .++|++|+|+|+++.. +... ..|+..+
T Consensus 100 ------------------------------------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l 142 (262)
T 3def_A 100 ------------------------------------VNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAI 142 (262)
T ss_dssp ------------------------------------ECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHH
T ss_pred ------------------------------------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHH
Confidence 0011111111111 3789999999998765 4433 4677777
Q ss_pred HHhhcC-CCCCEEEEEeCCCCccc
Q psy1524 215 FETKAS-TAVPIVVVGNKSDLADE 237 (592)
Q Consensus 215 ~~~~~~-~~~PIILVgNK~DL~~~ 237 (592)
.+.... ...|+++|+||+|+...
T Consensus 143 ~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 143 TQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHhchhhhcCEEEEEeCcccCCC
Confidence 665321 12499999999998644
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.52 E-value=1.1e-13 Score=158.47 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 180 ~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.+...++..||++|+|+|+++..+..+...|...+.. .+.|+++|+||+|+...
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccc
Confidence 4455678999999999999999888887766544422 36789999999999754
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.51 E-value=1.6e-13 Score=140.97 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=39.0
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+.+..+...++..+|++|+|+|.++.. .......+...+ ...+.|+|+|+||+|+...
T Consensus 155 ~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 155 QQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITKLDLMDK 213 (315)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEECTTSSCS
T ss_pred HHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEcCcccCCc
Confidence 346667778899999999999985432 111111222222 2357899999999999765
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=4.6e-14 Score=148.99 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=65.1
Q ss_pred chhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCC
Q psy1524 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLP 256 (592)
Q Consensus 177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~ 256 (592)
....+...|+.++|++|+|+|.++..... ..|+..+... ...+.|+|+|+||+|+.+.
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~Dl~~~------------------- 218 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKIDLMDK------------------- 218 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECGGGCCT-------------------
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCCccCCC-------------------
Confidence 34567778899999999999976544322 2333333333 3457899999999999865
Q ss_pred CccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 257 DSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 257 ~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.....+.+..+. .....+|+++|++++.++++.+..+....
T Consensus 219 ------------~~~~~~~~~~~~-~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 219 ------------GTDAVEILEGRS-FKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp ------------TCCSHHHHTTSS-SCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred ------------cccHHHHHcCcc-ccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 222223232222 24467799999999999998776554443
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.50 E-value=1e-14 Score=159.22 Aligned_cols=155 Identities=20% Similarity=0.217 Sum_probs=98.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|.+|+|||||+++|+.. .+... ....+.+.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999854 22210 01111122222333344
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
..+.||||||+ ++|......++.
T Consensus 85 --~~~~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~ 107 (458)
T 1f60_A 85 --YQVTVIDAPGH-------------------------------------------------------RDFIKNMITGTS 107 (458)
T ss_dssp --EEEEEEECCCC-------------------------------------------------------TTHHHHHHHSSS
T ss_pred --ceEEEEECCCc-------------------------------------------------------HHHHHHHHhhhh
Confidence 56778999999 778777788899
Q ss_pred cCCcEEEEEeCCCcC---CHH---HHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524 188 SADAFILVYAIDDPN---SFE---EIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC 260 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~---Sfe---~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (592)
.+|++|+|+|+++.. +|+ ....++..+.. .++| +|+|+||+|+.+.+...
T Consensus 108 ~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~------------------- 164 (458)
T 1f60_A 108 QADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESR------------------- 164 (458)
T ss_dssp CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHH-------------------
T ss_pred hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHH-------------------
Confidence 999999999998753 221 22222322222 2455 99999999997421000
Q ss_pred cccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHH
Q psy1524 261 AHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQV 302 (592)
Q Consensus 261 ~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeL 302 (592)
.....++...+++... ..+++++||++|.||+++
T Consensus 165 --------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 165 --------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp --------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred --------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 0011233444433222 368999999999999765
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=1.3e-14 Score=149.94 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=82.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCc--------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKY--------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~--------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~ 129 (592)
...++|+|+|++|||||||+++|.+. .+.... .+++. ......+..++..+.+++|||+|+....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~----- 90 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI----- 90 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhc-----
Confidence 55699999999999999999998865 444332 12222 1222233345666789999999982110
Q ss_pred ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc-------------CCcEEEEE
Q psy1524 130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS-------------ADAFILVY 196 (592)
Q Consensus 130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~-------------AD~iIlVy 196 (592)
.....+ .. +. +........++.. +++++++.
T Consensus 91 ---~~~e~~--~~--l~-----------------------------~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ld 134 (301)
T 2qnr_A 91 ---NCRDCF--KT--II-----------------------------SYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFI 134 (301)
T ss_dssp --------C--TT--HH-----------------------------HHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEE
T ss_pred ---CcHHHH--HH--HH-----------------------------HHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeee
Confidence 000000 00 00 0000001122222 23333333
Q ss_pred eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH
Q psy1524 197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276 (592)
Q Consensus 197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~ 276 (592)
+.+ ..+++.+.. ..+... ..+.++++|+||+|+..... ..+..+++
T Consensus 135 ePt-~~~Ld~~~~--~~l~~l--~~~~~iilV~~K~Dl~~~~e-----------------------------~~~~~~~~ 180 (301)
T 2qnr_A 135 SPF-GHGLKPLDV--AFMKAI--HNKVNIVPVIAKADTLTLKE-----------------------------RERLKKRI 180 (301)
T ss_dssp CSS-SSSCCHHHH--HHHHHH--TTTSCEEEEECCGGGSCHHH-----------------------------HHHHHHHH
T ss_pred cCc-ccCCCHHHH--HHHHHH--HhcCCEEEEEEeCCCCCHHH-----------------------------HHHHHHHH
Confidence 322 224555442 334333 24679999999999975410 11223566
Q ss_pred HHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 277 ~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
..+++ ..++.++++||++| |++++|..+++.+.
T Consensus 181 ~~~~~-~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 181 LDEIE-EHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHH-HTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHH-HcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 66666 44678999999999 99999999999884
No 180
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.50 E-value=7.3e-15 Score=160.83 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=89.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------------------------C------ccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------------------------K------YKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------------------------~------~~~Tt~d~~~~~v~vdg 107 (592)
...++|+++|..++|||||+++|+. +.+.+ + ....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 22211 0 00111111122334454
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
..+.||||||+ +.|......++.
T Consensus 121 --~~~~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~ 143 (467)
T 1r5b_A 121 --RRFSLLDAPGH-------------------------------------------------------KGYVTNMINGAS 143 (467)
T ss_dssp --EEEEECCCCC------------------------------------------------------------------TT
T ss_pred --eEEEEEECCCc-------------------------------------------------------HHHHHHHHhhcc
Confidence 45677999999 667666677789
Q ss_pred cCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524 188 SADAFILVYAIDDP---NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ 263 (592)
Q Consensus 188 ~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (592)
.+|++|+|+|+++. .+|+....+...+... ...++| +|+|+||+|+....... ..
T Consensus 144 ~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~~--------~~------------ 202 (467)
T 1r5b_A 144 QADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWSE--------ER------------ 202 (467)
T ss_dssp SCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSCH--------HH------------
T ss_pred cCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCccccH--------HH------------
Confidence 99999999999986 2343222222222211 123566 99999999996420000 00
Q ss_pred CCCCCCCCChHHHHHHHhhc--C----CCeEEEcccCCCccHHHHH
Q psy1524 264 ISGTPDQVPYDTTESVVQVD--W----ENGFVEASAKDNTNITQVF 303 (592)
Q Consensus 264 ~~~~~r~Vs~ee~~~la~~~--~----~~~~~EvSAktg~gVeeLf 303 (592)
.....++...+++.. . ..+++++||++|.||+++|
T Consensus 203 -----~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 203 -----YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp -----HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred -----HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 001122344444322 1 4679999999999999876
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.48 E-value=3.9e-14 Score=167.14 Aligned_cols=165 Identities=16% Similarity=0.118 Sum_probs=105.8
Q ss_pred CCCcceEEEEEcCCCCcHHHHHHHHHcC-------CCCC-------CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYN-------TFSP-------KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~-------~f~~-------~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
.....++|+++|..++|||||+++|++. .+.. ....+.+ +.....+.++.....++||||||+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH-- 369 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH-- 369 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--
Confidence 3456799999999999999999999863 1110 0001111 000011223334456778999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
++|......++..+|++|+|+|+++..
T Consensus 370 -----------------------------------------------------edF~~~mi~gas~AD~aILVVDAtdGv 396 (1289)
T 3avx_A 370 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP 396 (1289)
T ss_dssp -----------------------------------------------------HHHHHHHHHTSCCCSEEEEEEETTTCS
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEcCCccC
Confidence 778777778899999999999999875
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524 203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~ 281 (592)
... ...++..+... ++| +|+|+||+|+.++.... ....++...+++
T Consensus 397 ~~Q-TrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~l----------------------------e~i~eEi~elLk 443 (1289)
T 3avx_A 397 MPQ-TREHILLGRQV----GVPYIIVFLNKCDMVDDEELL----------------------------ELVEMEVRELLS 443 (1289)
T ss_dssp CTT-HHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHH----------------------------HHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHc----CCCeEEEEEeecccccchhhH----------------------------HHHHHHHHHHHH
Confidence 433 33344444432 577 89999999997531100 001233444444
Q ss_pred hcC----CCeEEEcccCCC--------ccHHHHHHHHHHHH
Q psy1524 282 VDW----ENGFVEASAKDN--------TNITQVFKELLVQA 310 (592)
Q Consensus 282 ~~~----~~~~~EvSAktg--------~gVeeLf~~Li~~i 310 (592)
... ..+++++||++| .||+++|+.+.+.+
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 222 368999999999 56888888887654
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.48 E-value=3.1e-13 Score=153.96 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce----------------e-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI----------------E-EMHHEDFSMNGVHLKLDILDTSGEQS 122 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt----------------~-d~~~~~v~vdg~~v~L~I~DT~G~~~ 122 (592)
....+|+|+|..|+|||||+++|+..........++ + .+......+....+.++||||+|+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~-- 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-- 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS--
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc--
Confidence 345799999999999999999999433221111110 0 111122233333577888999999
Q ss_pred CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN 202 (592)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~ 202 (592)
+.|......+++.+|++++|+|+++..
T Consensus 85 -----------------------------------------------------~~f~~~~~~~l~~ad~~ilVvD~~~g~ 111 (665)
T 2dy1_A 85 -----------------------------------------------------GDFVGEIRGALEAADAALVAVSAEAGV 111 (665)
T ss_dssp -----------------------------------------------------GGGHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred -----------------------------------------------------cchHHHHHHHHhhcCcEEEEEcCCccc
Confidence 777778888899999999999998876
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524 203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~ 235 (592)
..... .++..+.. .++|+|+|+||+|+.
T Consensus 112 ~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 112 QVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 64433 44444443 378999999999987
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.48 E-value=2.3e-13 Score=146.88 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD 141 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e 141 (592)
-.|+|+|++|||||||++++++... ...+..|+.......+.+++ ...+.+|||+|+.+.....
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~-------------- 222 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEG-------------- 222 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGS--------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhh--------------
Confidence 3589999999999999999997643 24455555544445555554 2345679999982110000
Q ss_pred hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-C
Q psy1524 142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-S 220 (592)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-~ 220 (592)
..+.......+..++.+|+|+|++ ...+.++..+..++..+.. .
T Consensus 223 ----------------------------------~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL 267 (416)
T 1udx_A 223 ----------------------------------KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL 267 (416)
T ss_dssp ----------------------------------CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH
T ss_pred ----------------------------------hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh
Confidence 000000111256799999999998 6778888888887766421 1
Q ss_pred CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300 (592)
Q Consensus 221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe 300 (592)
...|.|+|+||+|+... . ..+.....++ .....++++||+++.||+
T Consensus 268 ~~~P~ILVlNKlDl~~~-~--------------------------------~~~~l~~~l~-~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 268 LRRPSLVALNKVDLLEE-E--------------------------------AVKALADALA-REGLAVLPVSALTGAGLP 313 (416)
T ss_dssp HHSCEEEEEECCTTSCH-H--------------------------------HHHHHHHHHH-TTTSCEEECCTTTCTTHH
T ss_pred hcCCEEEEEECCChhhH-H--------------------------------HHHHHHHHHH-hcCCeEEEEECCCccCHH
Confidence 25799999999998643 0 1122233332 335679999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1524 301 QVFKELLVQAKVK 313 (592)
Q Consensus 301 eLf~~Li~~i~~~ 313 (592)
++++.|.+.+...
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998543
No 184
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.47 E-value=6.9e-14 Score=148.38 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=85.0
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~ 245 (592)
+.++.++..|+++++++|+|||+++ ..+|.++..|+..+.......++|+|||+||+||.... + ..
T Consensus 212 ~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k--i--~~ 287 (362)
T 1zcb_A 212 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK--V--QV 287 (362)
T ss_dssp ------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH--T--TT
T ss_pred hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh--c--cc
Confidence 7888888999999999999999999 77899999999888765444689999999999997541 0 01
Q ss_pred CCcccccCCCCCccccccCCCCCC-CCChHHHHHHHh-------h---cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524 246 GPFQTYLSGLPDSVCAHQISGTPD-QVPYDTTESVVQ-------V---DWENGFVEASAKDNTNITQVFKELLVQAKVK 313 (592)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~r-~Vs~ee~~~la~-------~---~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~ 313 (592)
..+..++. +... .++.+++..++. . ...+.+++|||+++.||+++|..+.+.+...
T Consensus 288 ~~l~~~fp------------~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 288 VSIKDYFL------------EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp CCGGGTCT------------TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCc------------cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 11111111 1111 267778877651 1 2356789999999999999999999988654
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.46 E-value=2.4e-15 Score=169.19 Aligned_cols=116 Identities=24% Similarity=0.307 Sum_probs=58.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG 107 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg 107 (592)
...++|+|+|.+|+|||||+++|+.. .+... ...++.+.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45689999999999999999999732 11100 11122233333333343
Q ss_pred eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187 (592)
Q Consensus 108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 187 (592)
..+.||||||+ +.|......++.
T Consensus 255 --~~i~iiDTPGh-------------------------------------------------------~~f~~~~~~~~~ 277 (592)
T 3mca_A 255 --KIYEIGDAPGH-------------------------------------------------------RDFISGMIAGAS 277 (592)
T ss_dssp ------CCEEESS-------------------------------------------------------SEEEEECCC---
T ss_pred --eEEEEEECCCh-------------------------------------------------------HHHHHHHHHHHh
Confidence 56677999999 444444444578
Q ss_pred cCCcEEEEEeCCCcC---CH---HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524 188 SADAFILVYAIDDPN---SF---EEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD 236 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~---Sf---e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~ 236 (592)
.+|++|+|+|+++.. .+ ......+..+.. .++| +|+|+||+|+..
T Consensus 278 ~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 278 SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ----CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred hCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 899999999998643 11 111112222222 2455 999999999975
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=3.9e-14 Score=152.04 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEE---------------------eeCC-eEEEEEEEeCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDF---------------------SMNG-VHLKLDILDTSG 119 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v---------------------~vdg-~~v~L~I~DT~G 119 (592)
+||+|+|.+|||||||+|+|++... ..++..|+.+.....+ .+++ ..+.++||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763 2455555543322221 1233 246788999999
Q ss_pred C
Q psy1524 120 E 120 (592)
Q Consensus 120 ~ 120 (592)
+
T Consensus 81 ~ 81 (397)
T 1wxq_A 81 L 81 (397)
T ss_dssp -
T ss_pred c
Confidence 8
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.46 E-value=3.2e-13 Score=136.71 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=82.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK 137 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~ 137 (592)
...++|+|+|.+|||||||+|+|++..+. ..+.+++.+.....+..++ +.+.||||||+.+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~----------- 103 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYI----------- 103 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEE-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccc-----------
Confidence 45799999999999999999999987753 4445555555444455555 55677999999211000
Q ss_pred cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH--hhhcCCcEEEEEeCCCcCCHHHH-HHHHHHH
Q psy1524 138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL--SISSADAFILVYAIDDPNSFEEI-RLIRDHI 214 (592)
Q Consensus 138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~--~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L 214 (592)
.+.+...... ....+|++|+|||++.. ++... ..|+..+
T Consensus 104 -------------------------------------~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l 145 (270)
T 1h65_A 104 -------------------------------------NDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAI 145 (270)
T ss_dssp -------------------------------------CHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHH
T ss_pred -------------------------------------hHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHH
Confidence 0111111111 23479999999999764 34433 3566666
Q ss_pred HHhhcCCC--CCEEEEEeCCCCccc
Q psy1524 215 FETKASTA--VPIVVVGNKSDLADE 237 (592)
Q Consensus 215 ~~~~~~~~--~PIILVgNK~DL~~~ 237 (592)
.+.. ..+ .|+|+|+||+|+...
T Consensus 146 ~~~~-~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 146 TDSF-GKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHH-CGGGGGGEEEEEECCSCCCG
T ss_pred HHHh-CcccccCEEEEEECcccCCc
Confidence 6542 222 699999999998754
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.45 E-value=1.8e-12 Score=148.22 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=82.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCC------C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS------P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~------~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G 119 (592)
....+|+|+|..|||||||+++|+.. .+. + ....|+. .....+..++ +.++||||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence 56789999999999999999999832 111 0 1112222 1112233344 6677899999
Q ss_pred CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID 199 (592)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs 199 (592)
+ ..|......+++.+|++|+|+|++
T Consensus 87 ~-------------------------------------------------------~df~~~~~~~l~~aD~~ilVvDa~ 111 (691)
T 1dar_A 87 H-------------------------------------------------------VDFTIEVERSMRVLDGAIVVFDSS 111 (691)
T ss_dssp S-------------------------------------------------------TTCHHHHHHHHHHCSEEEEEEETT
T ss_pred c-------------------------------------------------------cchHHHHHHHHHHCCEEEEEEECC
Confidence 9 667778888899999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+..++.....|.. +.. .++|+++|+||+|+...
T Consensus 112 ~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 112 QGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred CCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 9988887765553 333 37899999999999864
No 189
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.43 E-value=5.7e-13 Score=147.97 Aligned_cols=116 Identities=17% Similarity=0.282 Sum_probs=76.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC--------CccCceee-------------eEEEEEeeCCeEEEEEEEe
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP--------KYKRTIEE-------------MHHEDFSMNGVHLKLDILD 116 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~--------~~~~Tt~d-------------~~~~~v~vdg~~v~L~I~D 116 (592)
....+|+|+|.+|||||||+++|+.. .+.. ....++.| .....+..++ +.++|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 34689999999999999999999953 2210 00011111 1111222333 6677899
Q ss_pred CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY 196 (592)
Q Consensus 117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy 196 (592)
|||+ +.|......++..+|++|+|+
T Consensus 89 TPG~-------------------------------------------------------~df~~~~~~~l~~aD~~IlVv 113 (529)
T 2h5e_A 89 TPGH-------------------------------------------------------EDFSEDTYRTLTAVDCCLMVI 113 (529)
T ss_dssp CCCS-------------------------------------------------------TTCCHHHHHGGGGCSEEEEEE
T ss_pred CCCC-------------------------------------------------------hhHHHHHHHHHHHCCEEEEEE
Confidence 9999 667777777899999999999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
|+++...... ..++..+ ...++|+|+|+||+|+...
T Consensus 114 Da~~g~~~~t-~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 114 DAAKGVEDRT-RKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp ETTTCSCHHH-HHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred eCCccchHHH-HHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 9998754322 2222222 3357899999999999764
No 190
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.43 E-value=2.4e-15 Score=146.76 Aligned_cols=59 Identities=22% Similarity=0.107 Sum_probs=45.4
Q ss_pred CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCCCccHH
Q psy1524 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKDNTNIT 300 (592)
Q Consensus 222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAktg~gVe 300 (592)
..|+++|+||+|+... +.+..++...+++.. ...+++++||++|.||+
T Consensus 164 ~~~~iiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 212 (226)
T 2hf9_A 164 KTADLIVINKIDLADA-------------------------------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFD 212 (226)
T ss_dssp TTCSEEEEECGGGHHH-------------------------------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHH
T ss_pred hcCCEEEEeccccCch-------------------------------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHH
Confidence 4688999999999754 223455555555432 35789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1524 301 QVFKELLVQAK 311 (592)
Q Consensus 301 eLf~~Li~~i~ 311 (592)
++|+.+.+.+.
T Consensus 213 ~l~~~l~~~~~ 223 (226)
T 2hf9_A 213 KVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=149.33 Aligned_cols=183 Identities=17% Similarity=0.270 Sum_probs=83.5
Q ss_pred CCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKY-------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG 129 (592)
Q Consensus 59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~-------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~ 129 (592)
....++|+|+|++|||||||+|+|++..+. ..+ .+|+. +.....+..++....+++|||+|+.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~---- 103 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD---- 103 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc----
Confidence 456689999999999999999999987663 211 12222 12222223345556789999999832100
Q ss_pred ccccCCCCcCchhH--HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHH
Q psy1524 130 AVLWGPKKWGLDKV--CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEE 206 (592)
Q Consensus 130 ~~~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~ 206 (592)
. ......+ .+...+.. .+ .++ ..+...++.++++.+++|++..- .+++.
T Consensus 104 ----~--~~~~~~i~~~i~~~~~~------------------~l---~qr-~~IaRal~~d~~~~vlL~ldePt~~~L~~ 155 (418)
T 2qag_C 104 ----N--SNCWQPVIDYIDSKFED------------------YL---NAE-SRVNRRQMPDNRVQCCLYFIAPSGHGLKP 155 (418)
T ss_dssp ----------CHHHHHHHHHHHHH------------------HT---TTS-CC-CCCCCCCC-CCEEEEECCC-CCSCCH
T ss_pred ----c--hhhHHHHHHHHHHHHHH------------------HH---HHH-HHHHHHhccCCCeeEEEEEecCcccCCCH
Confidence 0 0000000 00000000 00 000 00112235667777777776543 45655
Q ss_pred HH-HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh--HHHHHHHhhc
Q psy1524 207 IR-LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY--DTTESVVQVD 283 (592)
Q Consensus 207 l~-~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~--ee~~~la~~~ 283 (592)
+. .|+..+. .++|+|+|+||+|+... +.+.. +.+...+. .
T Consensus 156 ~d~~~lk~L~-----~~v~iIlVinK~Dll~~-------------------------------~ev~~~k~~i~~~~~-~ 198 (418)
T 2qag_C 156 LDIEFMKRLH-----EKVNIIPLIAKADTLTP-------------------------------EECQQFKKQIMKEIQ-E 198 (418)
T ss_dssp HHHHHHHHHT-----TTSEEEEEEESTTSSCH-------------------------------HHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh-----ccCcEEEEEEcccCccH-------------------------------HHHHHHHHHHHHHHH-H
Confidence 54 3444442 37899999999998754 22222 34455554 3
Q ss_pred CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 284 WENGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 284 ~~~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.++.++++||+++.|++++|..+...+
T Consensus 199 ~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 199 HKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HTCCCCCCC-----------------C
T ss_pred cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 467899999999999999887776544
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.39 E-value=6.7e-12 Score=143.86 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=82.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------C-------ccCceeeeEEEEEee-----CCeEEEEEE
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----------K-------YKRTIEEMHHEDFSM-----NGVHLKLDI 114 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----------~-------~~~Tt~d~~~~~v~v-----dg~~v~L~I 114 (592)
....+|+|+|..|+|||||+++|+.. .+.. + ...|+. .....+.. ++..+.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT-SAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceee-eceEEEEECCccccCCceeEEE
Confidence 45689999999999999999999842 2211 0 011221 11112222 234578889
Q ss_pred EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL 194 (592)
Q Consensus 115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl 194 (592)
|||||+ ..|......+++.+|++|+
T Consensus 87 iDTPG~-------------------------------------------------------~df~~~~~~~l~~aD~aIl 111 (704)
T 2rdo_7 87 IDTPGH-------------------------------------------------------VDFTIEVERSMRVLDGAVM 111 (704)
T ss_pred EeCCCc-------------------------------------------------------cchHHHHHHHHHHCCEEEE
Confidence 999999 6777788888999999999
Q ss_pred EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
|+|+++..+......| ..+.. .++|+++|+||+|+...
T Consensus 112 VvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 112 VYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 9999988766555444 33322 37899999999999764
No 193
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.39 E-value=6e-12 Score=144.04 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-------ccCceeeeEEEEEeeCCeEEEEEEEeCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP-----------K-------YKRTIEEMHHEDFSMNGVHLKLDILDTSG 119 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~-----------~-------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G 119 (592)
....+|+|+|.+|||||||+++|+. +.+.. + ...|+. .....+..++ +.++||||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~-~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT-SAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C-CSEEEEEETT--EEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe-eeeEEEEECC--eeEEEEECcC
Confidence 4568999999999999999999994 33210 0 011111 1122334444 5677799999
Q ss_pred CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID 199 (592)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs 199 (592)
+ ..|......+++.+|++|+|+|++
T Consensus 85 ~-------------------------------------------------------~df~~~~~~~l~~aD~~llVvDa~ 109 (693)
T 2xex_A 85 H-------------------------------------------------------VDFTVEVERSLRVLDGAVTVLDAQ 109 (693)
T ss_dssp C-------------------------------------------------------SSCCHHHHHHHHHCSEEEEEEETT
T ss_pred C-------------------------------------------------------cchHHHHHHHHHHCCEEEEEECCC
Confidence 9 556666777889999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+..++.....|.. +.. .++|+|+|+||+|+...
T Consensus 110 ~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 110 SGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred CCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcccc
Confidence 9888877665543 433 37899999999999764
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.37 E-value=2.3e-13 Score=143.38 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS 88 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~ 88 (592)
...++|+|+|.+|||||||+|+|++..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34579999999999999999999988774
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=3e-12 Score=135.63 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~ 120 (592)
++|+|+|.+|||||||+|+|++..+ ..++..++.+.....+.+++.. ..++||||||+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL 76 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCC
Confidence 6999999999999999999998764 3455555544333345555421 46788999999
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.36 E-value=5.9e-13 Score=129.33 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=57.8
Q ss_pred cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT 267 (592)
Q Consensus 188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (592)
.++.+++|+|+++.... ...+.. . ...|+++|+||+|+...
T Consensus 129 ~~~~~i~vvd~~~~~~~--~~~~~~---~----~~~~~iiv~NK~Dl~~~------------------------------ 169 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDV--VEKHPE---I----FRVADLIVINKVALAEA------------------------------ 169 (221)
T ss_dssp SCSEEEEEEEGGGCTTH--HHHCHH---H----HHTCSEEEEECGGGHHH------------------------------
T ss_pred ccCcEEEEEeCCCcchh--hhhhhh---h----hhcCCEEEEecccCCcc------------------------------
Confidence 46889999999876431 111111 1 14689999999998754
Q ss_pred CCCCChHHHHHHHhhc-CCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 268 PDQVPYDTTESVVQVD-WENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 268 ~r~Vs~ee~~~la~~~-~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
+....++....++.. ...+++++||++|.|++++|+.+.+.+.
T Consensus 170 -~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 170 -VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp -HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred -hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 122344444444322 3568999999999999999999998773
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.30 E-value=1.5e-12 Score=137.41 Aligned_cols=89 Identities=15% Similarity=0.278 Sum_probs=58.1
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
+..+|++|+|+|.+..+.+..+.. ...+.|+++|+||+|+......
T Consensus 190 ~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~~~~------------------------- 235 (355)
T 3p32_A 190 ANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHHKEA------------------------- 235 (355)
T ss_dssp HTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGHHHH-------------------------
T ss_pred HHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcChhHH-------------------------
Confidence 578999999999877654432221 1124599999999998754100
Q ss_pred CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
.....+....... .+..++++|||++|.||+++++.+.+.+..
T Consensus 236 ----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 ----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0000111111110 235679999999999999999999988754
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=5.6e-11 Score=126.50 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=86.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~ 138 (592)
.-..+|+|||.||||||||+|+|++... +.+|..||.+.....+.+++.++ +|+||||...+....
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i--~l~D~pGl~~~a~~~----------- 136 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI--QMLDLPGIIDGAKDG----------- 136 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE--EEEECGGGCCC---------------
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE--EEEeCCCccCCchhh-----------
Confidence 3457999999999999999999997643 47888999998888899998665 559999983211000
Q ss_pred CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK 218 (592)
Q Consensus 139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~ 218 (592)
...... .-..++.||++++|+|++++. .+...+..+|....
T Consensus 137 ------------------------------------~~~g~~-~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~ 177 (376)
T 4a9a_A 137 ------------------------------------RGRGKQ-VIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVG 177 (376)
T ss_dssp -------------------------------------CHHHH-HHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTT
T ss_pred ------------------------------------hHHHHH-HHHHHHhcCccccccccCccH--HHHHHHHHHHHHhh
Confidence 011111 122478899999999999763 44444455554431
Q ss_pred -cCCCCCEEEEEeCCCCc
Q psy1524 219 -ASTAVPIVVVGNKSDLA 235 (592)
Q Consensus 219 -~~~~~PIILVgNK~DL~ 235 (592)
.-.+.|.+++.||+|..
T Consensus 178 ~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 178 IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEETCCCCCEEEEECSSS
T ss_pred HhhccCChhhhhhHhhhh
Confidence 12357888999999974
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.27 E-value=5.9e-12 Score=140.45 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=44.0
Q ss_pred hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 178 ~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
|..+...++..+|++|+|+|+++....+....++..+.. .+.|+++|+||+|+...
T Consensus 178 f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 178 FPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 556777788999999999999987666666666665533 35799999999999854
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.27 E-value=1.2e-11 Score=131.52 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCC-------------------eEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNG-------------------VHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg-------------------~~v~L~I~DT~G~ 120 (592)
++|+|+|.+|||||||+|+|++... ..++..++.+.....+.+.+ ....++||||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999997642 34444443322222223321 2356788999999
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.24 E-value=2e-11 Score=142.52 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=85.7
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC------------CCCCC----c--cCcee-eeEEEEEe------------eCCe
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN------------TFSPK----Y--KRTIE-EMHHEDFS------------MNGV 108 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~------------~f~~~----~--~~Tt~-d~~~~~v~------------vdg~ 108 (592)
....||+|+|..|||||||+++|+.. .+.+. + ..|+. ......+. +++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45689999999999999999999953 11110 0 11222 11222222 2455
Q ss_pred EEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc
Q psy1524 109 HLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS 188 (592)
Q Consensus 109 ~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 188 (592)
.+.++||||||+ .+|......+++.
T Consensus 97 ~~~i~liDTPG~-------------------------------------------------------~df~~~~~~~l~~ 121 (842)
T 1n0u_A 97 SFLINLIDSPGH-------------------------------------------------------VDFSSEVTAALRV 121 (842)
T ss_dssp EEEEEEECCCCC-------------------------------------------------------CSSCHHHHHHHHT
T ss_pred CceEEEEECcCc-------------------------------------------------------hhhHHHHHHHHHh
Confidence 788999999999 6777888889999
Q ss_pred CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
+|++|+|||+++..++.....|.... . .++|+|+|+||+|+..
T Consensus 122 aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 122 TDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcch
Confidence 99999999999999988876555432 2 3689999999999874
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.23 E-value=9.4e-12 Score=124.11 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=23.6
Q ss_pred CeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 286 NGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 286 ~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
.+++++||++|.|++++++.+.+.+.
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhc
Confidence 47899999999999999999988774
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.23 E-value=4.5e-12 Score=133.63 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=50.9
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
...+|++++|+|+++......+.. .+ -..|.++|+||+|+......
T Consensus 185 ~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~------------------------- 230 (349)
T 2www_A 185 ADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA------------------------- 230 (349)
T ss_dssp HTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-------------------------
T ss_pred HhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-------------------------
Confidence 567999999999987643222211 11 24588999999998743100
Q ss_pred CCCCCCChHHHHHHHh------hcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQ------VDWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~------~~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
...........+ ..+..+++.+||++|.|++++++.|.+.+.
T Consensus 231 ----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 ----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 000001111001 022457899999999999999999988763
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=6.6e-11 Score=135.78 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=59.8
Q ss_pred hhHHHHHhh-hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCC
Q psy1524 178 FPAMRALSI-SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLP 256 (592)
Q Consensus 178 ~~~l~~~~~-~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~ 256 (592)
+..+...|+ ..+|++|+|+|+++...-.+...++..+ ...+.|+|+|+||+|+.+...
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g~pvIlVlNKiDlv~~~~----------------- 234 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDEGT----------------- 234 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH----CTTCSSEEEEEECTTSSCTTC-----------------
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcCCCEEEEEeCcccCCcch-----------------
Confidence 344444455 5789999999998764433332333333 334789999999999986511
Q ss_pred CccccccCCCCCCCCChHHHHH--HHhh-cCCCeEEEcccCCCccHHHHHHHHHHH
Q psy1524 257 DSVCAHQISGTPDQVPYDTTES--VVQV-DWENGFVEASAKDNTNITQVFKELLVQ 309 (592)
Q Consensus 257 ~~~~~~~~~~~~r~Vs~ee~~~--la~~-~~~~~~~EvSAktg~gVeeLf~~Li~~ 309 (592)
... .... +... ....+++.+||++|.|+++|++.+.+.
T Consensus 235 --------------~~~-~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 235 --------------DAR-DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp --------------CSH-HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred --------------hhH-HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 111 1110 0000 112357789999999999999888764
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=3.8e-11 Score=126.05 Aligned_cols=88 Identities=18% Similarity=0.332 Sum_probs=52.0
Q ss_pred hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS 265 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (592)
...+|++|+|+|+++...+..+.. .. .+.|+++|+||+|+..... .
T Consensus 167 ~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~-~------------------------ 212 (341)
T 2p67_A 167 ARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTN-V------------------------ 212 (341)
T ss_dssp HTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHH-H------------------------
T ss_pred HHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHH-H------------------------
Confidence 578999999999976543211111 11 1358899999999875310 0
Q ss_pred CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
....++....... .+..+++++||++|.|++++++.+.+.+.
T Consensus 213 ----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 ----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0000111111111 12457899999999999999999998764
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.01 E-value=4.5e-09 Score=117.15 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=77.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC--C----------------CCCC----cc--CceeeeEEEEEeeCCeEEEEEEEe
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN--T----------------FSPK----YK--RTIEEMHHEDFSMNGVHLKLDILD 116 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~--~----------------f~~~----~~--~Tt~d~~~~~v~vdg~~v~L~I~D 116 (592)
+.-+|+|+|..++|||||..+|+.. . +.+. .. -|+. .....+..++ +.++|+|
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~-s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVT-TSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CT-TTEEEEEETT--EEEEEEC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEe-eceEEEEECC--EEEEEEe
Confidence 4569999999999999999999721 1 1100 00 0111 1112233344 6778899
Q ss_pred CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY 196 (592)
Q Consensus 117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy 196 (592)
|||+ ..|..-....++-+|++|+|+
T Consensus 107 TPGH-------------------------------------------------------vDF~~Ev~raL~~~DgAvlVv 131 (548)
T 3vqt_A 107 TPGH-------------------------------------------------------QDFSEDTYRVLTAVDSALVVI 131 (548)
T ss_dssp CCCG-------------------------------------------------------GGCSHHHHHHHHSCSEEEEEE
T ss_pred CCCc-------------------------------------------------------HHHHHHHHHHHHhcCceEEEe
Confidence 9999 566666677788999999999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
|+...-.-.....| ..+.+ .++|+|++.||+|....
T Consensus 132 da~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 132 DAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp ETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCC
T ss_pred ecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhc
Confidence 99987665544444 44444 37999999999998754
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=6.1e-10 Score=115.00 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=73.4
Q ss_pred cchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524 176 NEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG 254 (592)
Q Consensus 176 e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~ 254 (592)
+++..+.+.+++++|++|+|||++++. ++..+..|+..+.. .++|+|+|+||+||.++
T Consensus 67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~----------------- 125 (302)
T 2yv5_A 67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE----------------- 125 (302)
T ss_dssp CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH-----------------
T ss_pred ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc-----------------
Confidence 555566666899999999999999986 99999999886654 47899999999999754
Q ss_pred CCCccccccCCCCCCCCC-hHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524 255 LPDSVCAHQISGTPDQVP-YDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307 (592)
Q Consensus 255 ~~~~~~~~~~~~~~r~Vs-~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li 307 (592)
+.+. .++...+++ ..+.+++++||++|.||+++|+.+.
T Consensus 126 --------------~~v~~~~~~~~~~~-~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 126 --------------EEKKELERWISIYR-DAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp --------------HHHHHHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred --------------cccHHHHHHHHHHH-HCCCeEEEEECCCCCCHHHHHhhcc
Confidence 1111 233344443 3356899999999999999987653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=2.4e-09 Score=112.30 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.3
Q ss_pred CCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 285 ENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 285 ~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
..+++.+||+++.|++++++.|.+.+.
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999988663
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.83 E-value=3.7e-09 Score=113.13 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=52.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGV---------------HLKLDILDTSGEQSGK 124 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~---------------~v~L~I~DT~G~~~~~ 124 (592)
..++|+|+|.+|||||||+|+|++..+. .++..+|.+.....+.+.+. ...++||||+|+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4579999999999999999999987653 34455555554555555542 2347889999982110
Q ss_pred cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF 204 (592)
Q Consensus 125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf 204 (592)
.. .+........+++.+|++++|+|+++..++
T Consensus 101 s~------------------------------------------------~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HN------------------------------------------------GQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------------------------------------------------------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ch------------------------------------------------hhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 00 011112334568999999999999876665
Q ss_pred HH
Q psy1524 205 EE 206 (592)
Q Consensus 205 e~ 206 (592)
.+
T Consensus 133 ~~ 134 (396)
T 2ohf_A 133 TH 134 (396)
T ss_dssp --
T ss_pred hh
Confidence 44
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=6.3e-08 Score=103.57 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=45.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~ 120 (592)
...+|+|+|.+|||||||+|+|++..+ ..++..|+.+.....+.+++.. ..+.+||++|.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 357999999999999999999998764 3556666666666666666521 35678999998
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.77 E-value=5.5e-09 Score=118.47 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc--CCCCC----CccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCCCCCc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY--NTFSP----KYKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQSGKG 125 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~--~~f~~----~~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~~~~~ 125 (592)
-+|+|+|..++|||||+.+|+. +.+.. ....++.| .....+.+....+.++|+||||+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH----- 77 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH----- 77 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS-----
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc-----
Confidence 4799999999999999999972 22211 00001101 11111222333356778999999
Q ss_pred ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524 126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE 205 (592)
Q Consensus 126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe 205 (592)
..|..-....++-+|++|+|+|+...-.-.
T Consensus 78 --------------------------------------------------~DF~~Ev~raL~~~DgavlVVDa~~GV~~q 107 (638)
T 3j25_A 78 --------------------------------------------------MDFLAEVYRSLSVLDGAILLISAKDGVQAQ 107 (638)
T ss_dssp --------------------------------------------------SSTHHHHHHHHTTCSEEECCEESSCTTCSH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhCEEEEEEeCCCCCcHH
Confidence 667777777889999999999998765433
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
.. ..+..+.+. ++|+|++.||+|....
T Consensus 108 T~-~v~~~a~~~----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 108 TR-ILFHALRKM----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HH-HHHHHHHHH----TCSCEECCEECCSSSC
T ss_pred HH-HHHHHHHHc----CCCeEEEEeccccccC
Confidence 33 334444443 6899999999998754
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.71 E-value=2.5e-07 Score=106.09 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=77.5
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC--------CCCC--CccCceee---------eEEEEEeeC-----CeEEEEEEE
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN--------TFSP--KYKRTIEE---------MHHEDFSMN-----GVHLKLDIL 115 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~--------~f~~--~~~~Tt~d---------~~~~~v~vd-----g~~v~L~I~ 115 (592)
++.-+|+|+|..++|||||..+|+.. .... .+..+..+ .....+... ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34568999999999999999999721 1110 00000000 001111221 235889999
Q ss_pred eCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEE
Q psy1524 116 DTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILV 195 (592)
Q Consensus 116 DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlV 195 (592)
||||+ -.|..-....++-+|++|+|
T Consensus 91 DTPGH-------------------------------------------------------vDF~~Ev~~aLr~~Dgavlv 115 (709)
T 4fn5_A 91 DTPGH-------------------------------------------------------VDFTIEVERSLRVLDGAVVV 115 (709)
T ss_dssp CCCSC-------------------------------------------------------TTCHHHHHHHHHHCSEEEEE
T ss_pred eCCCC-------------------------------------------------------cccHHHHHHHHHHhCeEEEE
Confidence 99999 56666667778899999999
Q ss_pred EeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524 196 YAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237 (592)
Q Consensus 196 yDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~ 237 (592)
+|+...-.-.....|.. +.+. ++|+|++.||+|....
T Consensus 116 VDaveGV~~qT~~v~~~-a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 116 FCGTSGVEPQSETVWRQ-ANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EETTTCSCHHHHHHHHH-HHHH----TCCEEEEEECSSSTTC
T ss_pred EECCCCCchhHHHHHHH-HHHc----CCCeEEEEccccccCc
Confidence 99998766544443433 3332 7899999999998654
No 213
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.64 E-value=2.2e-08 Score=98.05 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=68.2
Q ss_pred cccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--c--CCCCCEEEEEeCC-CCcccccccccCCC
Q psy1524 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--A--STAVPIVVVGNKS-DLADENRQVDLTGG 246 (592)
Q Consensus 172 ~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~--~~~~PIILVgNK~-DL~~~~~~~~~~~~ 246 (592)
--++++++.+|..||.++|++|+|+|++|++.++ ....+.+|.... . ..+.|++|.+||. |+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence 3478899999999999999999999999987654 333332332221 1 2578999999995 67533
Q ss_pred CcccccCCCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 247 PFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
.+..+..... .......+..|||++|+|+.|.++||++.+.
T Consensus 179 ------------------------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 179 ------------------------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp ------------------------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred ------------------------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 2333332221 1123345789999999999999999998773
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.50 E-value=1.8e-07 Score=99.09 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=72.0
Q ss_pred cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524 174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS 253 (592)
Q Consensus 174 ~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~ 253 (592)
..++|..+...+++.+|++|+|+|++|+. ..|...+.+.. .+.|+|+|+||+||.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~---------------- 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK---------------- 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT----------------
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc----------------
Confidence 45889999999999999999999998752 45666666652 47899999999999754
Q ss_pred CCCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHHH
Q psy1524 254 GLPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 254 ~~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.+..+....+ ++ ..+. .++++||++|.||+++++.+.+..
T Consensus 112 ----------------~~~~~~~~~~l~~~~~-~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 112 ----------------SVKHDKVKHWMRYSAK-QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ----------------TSCHHHHHHHHHHHHH-HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------ccCHHHHHHHHHHHHH-HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 1222333332 22 2233 689999999999999999987654
No 215
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.50 E-value=1.7e-07 Score=95.87 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=72.5
Q ss_pred ccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH----HHHhhcCCCCCEEEEEeC-CCCcccccccccCCCC
Q psy1524 173 CSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH----IFETKASTAVPIVVVGNK-SDLADENRQVDLTGGP 247 (592)
Q Consensus 173 ~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~----L~~~~~~~~~PIILVgNK-~DL~~~~~~~~~~~~~ 247 (592)
-+|++++.++..|+.++|++|+|+|++|++.++ ....+.+ +.+.....+.|++|.+|| .|+...
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------- 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------- 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB----------
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC----------
Confidence 577899999999999999999999999988654 3322222 212111357899999997 587543
Q ss_pred cccccCCCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELLVQAK 311 (592)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~ 311 (592)
.+..+..... .......+..|||++|+|+.|.++++++.+.
T Consensus 264 -----------------------ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 264 -----------------------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp -----------------------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred -----------------------CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2323322221 1122344789999999999999999998873
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.36 E-value=6.6e-07 Score=94.83 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=70.6
Q ss_pred cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524 174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS 253 (592)
Q Consensus 174 ~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~ 253 (592)
.++.|.++...++.+++++|+|+|++|+.+ .|...+.+.. .+.|+|+|+||+||.+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~---------------- 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR---------------- 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT----------------
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC----------------
Confidence 468999999999999999999999999763 3444454442 37899999999999754
Q ss_pred CCCCccccccCCCCCCCCChHHHHHH----HhhcCC---CeEEEcccCCCccHHHHHHHHHHHH
Q psy1524 254 GLPDSVCAHQISGTPDQVPYDTTESV----VQVDWE---NGFVEASAKDNTNITQVFKELLVQA 310 (592)
Q Consensus 254 ~~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~---~~~~EvSAktg~gVeeLf~~Li~~i 310 (592)
.+..+....+ ++ ..+ ..++.+||++|.|++++++.+.+.+
T Consensus 114 ----------------~~~~~~~~~~l~~~~~-~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 114 ----------------SVKYPKLLRWMRRMAE-ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ----------------TCCHHHHHHHHHHHHH-TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------ccCHHHHHHHHHHHHH-HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 1222333322 22 223 3689999999999999999887654
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.25 E-value=1.3e-07 Score=100.34 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC------CC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN------TF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~------~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.+|+++|.+|||||||+|+|++. .. ...+..||.+.. .+.++.. +.++||||.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~ 222 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGI 222 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCc
Confidence 47999999999999999999965 22 233444554332 2334332 566999998
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.14 E-value=1.4e-07 Score=100.02 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC------C--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT------F--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~------f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
.+|+++|.+|||||||+|+|++.. . ...+..||.+.. .+.++.. +.++||||.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDEE---SSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSSS---CEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecCC---eEEEeCCCc
Confidence 589999999999999999999652 1 123333443322 2333332 567999998
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.12 E-value=2.9e-06 Score=93.54 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+|+|.+|||||||+++|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999999
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.00 E-value=1.2e-05 Score=81.98 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred chhHHHHHhhhcCCcEEEEEeCCCcCCHHH--HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524 177 EFPAMRALSISSADAFILVYAIDDPNSFEE--IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG 254 (592)
Q Consensus 177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~--l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~ 254 (592)
+........+..+|++++|+|+.++.+..+ +..++ .++|+++|+||+||.+...
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--------------- 67 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--------------- 67 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH---------------
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH---------------
Confidence 333444556889999999999999877642 33221 4789999999999975410
Q ss_pred CCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524 255 LPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV 312 (592)
Q Consensus 255 ~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~ 312 (592)
.+....+.+ ..+.+++.+||+++.|++++++.+.+.+..
T Consensus 68 ------------------~~~~~~~~~-~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 68 ------------------TQQWKEHFE-NQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ------------------HHHHHHHHH-TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHH-hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 011122222 234578999999999999999988777643
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=3.2e-05 Score=83.42 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=36.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cCc-eeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----KRT-IEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
..++|+|+|++|||||||+|.+++..+.... .+. +.......+.-.+....+.++|++|.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 3467999999999999999999976543211 111 11111112222333346788999998
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.95 E-value=2.2e-05 Score=79.57 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+|++|+|||||+|.+++-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999964
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.91 E-value=0.00012 Score=78.63 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
...|+|+|++|||||||+|.+++-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999974
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.68 E-value=3.2e-05 Score=78.91 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=34.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
...++|+|+|.+|||||||+|+|++.... .....+|.+.. .+.++. .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence 45689999999999999999999976532 33333443221 223332 3556999999
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.61 E-value=0.00013 Score=81.84 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=37.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEE----e---eCCeEEEEEEEeCCCC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF----S---MNGVHLKLDILDTSGE 120 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v----~---vdg~~v~L~I~DT~G~ 120 (592)
...++|+|+|.+|||||||+|+|++....-....|+.+...... . .++. .+.|+||||.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~--~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGH--ILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTC--EEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCc--eEEEecCCCc
Confidence 45689999999999999999999977532123333322111111 1 1333 4556999998
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.61 E-value=2e-05 Score=79.62 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~ 120 (592)
++|+++|.+|||||||+|+|++.... .....++... ..+.++. .+.+|||||+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGI 154 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEE
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCc
Confidence 79999999999999999999977653 2222222221 1222332 3567999998
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00069 Score=73.35 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+|+|.+||||||++..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999988
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.28 E-value=0.00012 Score=73.78 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=56.7
Q ss_pred HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC 260 (592)
Q Consensus 181 l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (592)
.....+.++|++|+|+|+.++.+..... +. . . ++|+|+|+||+||.+...
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-l-l--~k~~iivlNK~DL~~~~~--------------------- 63 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-F-S--RKETIILLNKVDIADEKT--------------------- 63 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-C-T--TSEEEEEEECGGGSCHHH---------------------
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-h-c--CCCcEEEEECccCCCHHH---------------------
Confidence 3344588999999999999887654311 11 1 1 689999999999986410
Q ss_pred cccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHH
Q psy1524 261 AHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308 (592)
Q Consensus 261 ~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~ 308 (592)
.+....+.+ ..+.++ .+||+++.|++++++.+..
T Consensus 64 ------------~~~~~~~~~-~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 64 ------------TKKWVEFFK-KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ------------HHHHHHHHH-HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ------------HHHHHHHHH-HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 011122222 234567 8999999999999877644
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.17 E-value=0.00042 Score=74.85 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.07 E-value=0.0015 Score=73.40 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.|+|+|++|||||||++.+++-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999753
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.88 E-value=0.00023 Score=73.55 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=55.7
Q ss_pred HhhhcCCcEEEEEeCCCcCC-HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524 184 LSISSADAFILVYAIDDPNS-FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH 262 (592)
Q Consensus 184 ~~~~~AD~iIlVyDvsd~~S-fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (592)
..+.++|.+++|+|+.++.. ...+..++-.. ...++|.|||+||+||.++..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~----------------------- 134 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQD----------------------- 134 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHH-----------------------
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhh-----------------------
Confidence 35889999999999997754 44333333222 235789999999999986510
Q ss_pred cCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHH
Q psy1524 263 QISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFK 304 (592)
Q Consensus 263 ~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~ 304 (592)
..+....+.+. ..+.+++.+||+++.|+++|+.
T Consensus 135 ---------~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 135 ---------TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp ---------HHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred ---------hHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 00012222221 2346789999999999888764
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.71 E-value=0.00029 Score=76.60 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=32.3
Q ss_pred HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCC
Q psy1524 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSD 233 (592)
Q Consensus 183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~D 233 (592)
..++..+++.++|+|.++. +++....|+..+.+. ..+++.+-..++
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~----~~~vv~l~~~~~ 160 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN----GYKTFFVESICV 160 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH----TCEEEEEEECCC
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc----CCcEEEEEEECC
Confidence 4466678899999999988 677777777766654 345666555554
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.62 E-value=0.0062 Score=64.11 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=52.7
Q ss_pred hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524 186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI 264 (592)
Q Consensus 186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (592)
..++|.+++|... ++. +...+..++-.... .++|.|||+||+||.++..
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~------------------------- 177 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG------------------------- 177 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH-------------------------
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh-------------------------
Confidence 6789999988665 454 34444444333222 3678899999999986510
Q ss_pred CCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHH
Q psy1524 265 SGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKE 305 (592)
Q Consensus 265 ~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~ 305 (592)
.+....+... ..+.+++.+||+++.|++++...
T Consensus 178 --------~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 178 --------MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp --------HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 0112222221 34567899999999999988753
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.0017 Score=70.10 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
....|+++|.+||||||++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999987
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.41 E-value=0.005 Score=63.09 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~ 83 (592)
.-.|+++|.+||||||++..|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999999999888
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.93 E-value=0.0071 Score=65.53 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+..-|+|+|.+++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567889999999999999999985
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.97 E-value=0.012 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999853
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.72 E-value=0.012 Score=60.56 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.++|+|++|||||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 38999999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.64 E-value=0.016 Score=55.28 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.62 E-value=0.017 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.758 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+++|+|++|||||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998854
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.24 E-value=0.021 Score=53.51 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|||||||++.|++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999853
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.23 E-value=0.022 Score=54.93 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.--|+|+|++|||||||+++|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999853
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.20 E-value=0.022 Score=53.50 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|+|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999854
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.01 E-value=0.027 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|+|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999864
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.95 E-value=0.026 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999854
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.95 E-value=0.028 Score=53.60 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999843
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.90 E-value=0.027 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999864
No 248
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.90 E-value=0.2 Score=46.50 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy1524 65 VVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~ 84 (592)
++|.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.87 E-value=0.027 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++.+++-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.81 E-value=0.029 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--|+|+|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999854
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.67 E-value=0.028 Score=52.12 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~ 83 (592)
-++|+|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58899999999999999865
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.48 E-value=0.038 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-|+|+|++|||||||+++|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999853
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.40 E-value=0.042 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.....|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.31 E-value=0.042 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.++|+|++|||||||+|.|++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 78999999999999999999654
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.21 E-value=0.048 Score=49.44 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.18 E-value=0.043 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998643
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.13 E-value=0.046 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+|||||||++.|..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999984
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.05 E-value=0.048 Score=49.15 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q psy1524 63 HKVVVMGGPKVGKSSIIHRF 82 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL 82 (592)
.-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.88 E-value=0.054 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.84 E-value=0.053 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.++|+|+.|+|||||++.+++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998654
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.83 E-value=0.054 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|+|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999984
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.80 E-value=0.061 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|++|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999885
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.66 E-value=0.062 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~ 83 (592)
..|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.64 E-value=0.052 Score=53.37 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|||||||++-+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998874
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.63 E-value=0.058 Score=51.02 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|+|.+|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.54 E-value=0.07 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 267
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.52 E-value=0.059 Score=55.01 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~ 83 (592)
-.++|+|++|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.49 E-value=0.067 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.49 E-value=0.063 Score=50.52 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-|+|+|.+|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999853
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.47 E-value=0.069 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.45 E-value=0.092 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|+|||||++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.44 E-value=0.053 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
-.++|+|++|||||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999998643
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.40 E-value=0.073 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999984
No 274
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.40 E-value=0.1 Score=49.39 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34468999999999999999999853
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.39 E-value=0.097 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.39 E-value=0.064 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|||||||++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.37 E-value=0.059 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++-+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988753
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.30 E-value=0.073 Score=50.65 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
No 279
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.30 E-value=0.091 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.....|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999974
No 280
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.26 E-value=0.07 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.793 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-++|+|++|||||||++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999883
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.24 E-value=0.072 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+|+|+|.+||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 282
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.22 E-value=0.11 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 283
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.19 E-value=0.067 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
--++|+|++|||||||++.+++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998643
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.17 E-value=0.064 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+|+|+|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998853
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.15 E-value=0.09 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-|+|+|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.14 E-value=0.082 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|+|.+||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999984
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.13 E-value=0.074 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 288
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.06 E-value=0.08 Score=50.58 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|+||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 289
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.03 E-value=0.97 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
++|+|++|+|||||++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998863
No 290
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.02 E-value=0.051 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFL-YN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~-~~ 85 (592)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998 54
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.01 E-value=0.048 Score=51.16 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|++|+|||||++.+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.00 E-value=0.076 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|+|||||++.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.98 E-value=0.11 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 294
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.97 E-value=0.096 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 295
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.92 E-value=0.072 Score=53.27 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++.+++-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998753
No 296
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.91 E-value=0.075 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
=.|+|+|++|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3799999999999999999885
No 297
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.88 E-value=0.079 Score=52.13 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|+|||||++.+++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999874
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.86 E-value=0.11 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.026 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.84 E-value=0.1 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.83 E-value=0.082 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998854
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.79 E-value=0.082 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 302
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.77 E-value=0.076 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++.+++-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 303
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.77 E-value=0.079 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998754
No 304
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.69 E-value=0.078 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998854
No 305
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.68 E-value=0.071 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.++|+|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 306
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.67 E-value=0.08 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999999854
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.63 E-value=0.089 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998853
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.61 E-value=0.088 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 8999999999999999998853
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.61 E-value=0.11 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.60 E-value=0.1 Score=48.20 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+...|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 311
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.54 E-value=0.092 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999864
No 312
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.49 E-value=0.094 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|||||||++-+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999864
No 313
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.46 E-value=0.086 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998853
No 314
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.44 E-value=0.087 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6889999999999999998753
No 315
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.36 E-value=0.091 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 316
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.34 E-value=0.55 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
.+..-|+|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 355677799999999999999554
No 317
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.33 E-value=0.092 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999998753
No 318
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.33 E-value=0.097 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999998853
No 319
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.28 E-value=0.11 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.27 E-value=0.13 Score=47.98 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999853
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.26 E-value=0.084 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 322
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.23 E-value=0.095 Score=52.32 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 323
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.22 E-value=0.1 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998854
No 324
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.17 E-value=0.1 Score=52.71 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999998853
No 325
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.14 E-value=0.11 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988853
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.11 E-value=0.15 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 327
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.97 E-value=0.14 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
..|+|+|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999853
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.95 E-value=0.15 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...+|+|+|.+||||||+..+|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999973
No 329
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.94 E-value=0.06 Score=50.86 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|+|.+|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.90 E-value=0.1 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+++-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998854
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.87 E-value=0.13 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.81 E-value=0.11 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+++-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7889999999999999998753
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.77 E-value=0.14 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+|+||||+++.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34789999999999999999973
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.73 E-value=0.14 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.72 E-value=0.14 Score=46.28 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.69 E-value=0.17 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4457899999999999999998884
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.67 E-value=0.15 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999973
No 338
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.62 E-value=0.14 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.60 E-value=0.15 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|+.|+|||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.58 E-value=0.094 Score=53.87 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|++|+|||||++-+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 789999999999999988874
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.58 E-value=0.18 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.53 E-value=0.13 Score=47.33 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.47 E-value=0.18 Score=51.24 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.....|+|+|.+|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998873
No 344
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.46 E-value=0.13 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+++-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998864
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.43 E-value=0.15 Score=47.27 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 346
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.41 E-value=0.14 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|+|||||+..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999843
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.34 E-value=0.15 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|+|||||+|+..+|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.34 E-value=0.13 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 349
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.29 E-value=0.16 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.28 E-value=0.22 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....|+|+|.+|+||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.18 E-value=0.19 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.15 E-value=0.17 Score=46.74 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.14 E-value=0.16 Score=48.90 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.12 E-value=0.14 Score=53.81 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEE
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL 110 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v 110 (592)
-++|+|++|||||||++.+.+-.- ++ ...+.++|..+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~-----p~-----~G~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ-----PD-----SGEISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC-----CS-----EEEEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCC-----CC-----CcEEEECCEEC
Confidence 689999999999999999985422 22 34566777544
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.11 E-value=0.14 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|+|++|||||||++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999884
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.08 E-value=0.17 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.00 E-value=0.15 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999853
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.99 E-value=0.18 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.97 E-value=0.18 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...-|+|+|++|||||||+.+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999984
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.95 E-value=0.11 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998853
No 361
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.91 E-value=0.57 Score=44.64 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=35.6
Q ss_pred HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236 (592)
Q Consensus 183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~ 236 (592)
...+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|++|...
T Consensus 85 ~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred HHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 34567899999998854 455666666666665532 567899999998653
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.90 E-value=0.15 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|+|++|+|||||++.+++-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999853
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.89 E-value=0.15 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999998753
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.87 E-value=0.17 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.83 E-value=0.21 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...+-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.76 E-value=0.16 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++-+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999854
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.75 E-value=0.15 Score=53.36 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999884
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.70 E-value=0.2 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 369
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.59 E-value=0.2 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~ 83 (592)
...|+|+|++|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.59 E-value=0.17 Score=53.19 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++-+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 6889999999999999999854
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.57 E-value=0.19 Score=45.64 Aligned_cols=21 Identities=10% Similarity=0.282 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.56 E-value=0.18 Score=49.91 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|+|++|+|||||..+|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999974
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.56 E-value=0.17 Score=53.17 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 6889999999999999999854
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.51 E-value=0.17 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 6889999999999999999854
No 375
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.51 E-value=0.17 Score=51.73 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.--|+|+|++|||||||++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999884
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.51 E-value=0.17 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 6789999999999999988853
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.40 E-value=0.19 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999873
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.37 E-value=0.18 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++-+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 6889999999999999999854
No 379
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.36 E-value=0.18 Score=50.65 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy1524 65 VVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~ 84 (592)
|+|+|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999985
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.34 E-value=0.18 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..--|+|+|++|||||||++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999884
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.33 E-value=0.23 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....|+|+|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999885
No 382
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.30 E-value=0.19 Score=47.33 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999996
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.29 E-value=0.18 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++-+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6889999999999999998854
No 384
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.23 E-value=0.17 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988743
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.16 E-value=0.19 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|+|++|+|||||++.+++
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999985
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.13 E-value=0.14 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
...-|+|+|..|||||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999998753
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.07 E-value=0.21 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999964
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.07 E-value=0.16 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|+|||||++.+++-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999854
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.06 E-value=0.26 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.96 E-value=0.17 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.87 E-value=0.26 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|+|.+|+||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999874
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.86 E-value=0.19 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|+|||||+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 393
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.83 E-value=0.16 Score=53.08 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|||||||++-+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 6889999999999999999854
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.76 E-value=0.23 Score=45.82 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999874
No 395
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.72 E-value=0.21 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|.|++|+|||+|+..+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.67 E-value=0.21 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999853
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.57 E-value=0.27 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.51 E-value=0.21 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 689999999999999998884
No 399
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.51 E-value=1.4 Score=39.10 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|.|++|+|||+|+..+..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred cEEEECCCCccHHHHHHHHHH
Confidence 599999999999999987763
No 400
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.49 E-value=0.3 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=19.0
Q ss_pred ceE-EEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHK-VVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iK-IvIvG~~nVGKSSLInrL~~ 84 (592)
..| |+|+|+|||||+|+..+|+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334 55789999999999999984
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.09 E-value=0.23 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....|+|+|.+||||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 402
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.09 E-value=0.25 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|.|++|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.95 E-value=0.24 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999853
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.94 E-value=0.26 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+|+||||+++.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999873
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.94 E-value=0.26 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
=+++|+|++|||||||++.+++.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999965
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.93 E-value=0.16 Score=53.20 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|||||||++-+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999998854
No 407
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.93 E-value=0.24 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999853
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.85 E-value=0.3 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..+.|+|+|++|+|||||.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999873
No 409
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.79 E-value=0.3 Score=51.21 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=23.0
Q ss_pred ecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524 351 WENGFVEASAKDNTNITQVFKELLVQAK 378 (592)
Q Consensus 351 ~~~~fvEiSAK~~~nI~~lf~e~v~~ak 378 (592)
..+.++++||+++.||..+|...+..+.
T Consensus 325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 325 RPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp -CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 4557889999999999999998876653
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.69 E-value=0.26 Score=51.71 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|+|++|||||||++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999999884
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.68 E-value=0.39 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...-|+|.|.+||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999984
No 412
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.68 E-value=0.28 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988843
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.65 E-value=0.2 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--++|+|..|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999965
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.64 E-value=0.33 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|.|.+||||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 415
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.62 E-value=0.28 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|+|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999985
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.14 E-value=0.43 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHH
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~ 83 (592)
..+.|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.14 E-value=0.27 Score=48.86 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|+|.+|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 418
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.07 E-value=0.31 Score=53.58 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|+|++|||||||++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999853
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.03 E-value=0.29 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..-.|+|+|.+|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999884
No 420
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.92 E-value=0.33 Score=46.52 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|++|+|||||+.+++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888743
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.89 E-value=0.31 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+++|+|++|||||||++.+++.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999999865
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.86 E-value=0.33 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.3 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|+|++|||||||++-+++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999999854
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.28 E-value=0.41 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~ 83 (592)
-.+|+|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999876
No 425
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.17 E-value=0.36 Score=47.99 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
--++|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.81 E-value=0.38 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.67 E-value=0.39 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|+..+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999853
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.54 E-value=0.42 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
=.++|+|+.|+|||||++-+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998653
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.52 E-value=0.42 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|.|++|+|||+|+..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.41 E-value=0.38 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998753
No 431
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.36 E-value=0.4 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
--|+|.|++|+|||||++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999885
No 432
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.32 E-value=0.41 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|.|++|+|||+|++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.19 E-value=0.43 Score=49.86 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~ 83 (592)
++|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999987
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.15 E-value=0.43 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998854
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.13 E-value=0.56 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...+.|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999984
No 436
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.07 E-value=0.42 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|||||||++.+++
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998885
No 437
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.61 E-value=0.58 Score=45.24 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 60 DTRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 60 ~~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.....|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999874
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.50 E-value=0.57 Score=43.68 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 439
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.49 E-value=0.61 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
....|+|.|++|+|||+|+..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987663
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.33 E-value=0.48 Score=50.03 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999984
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.29 E-value=0.48 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-++|.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999884
No 442
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.28 E-value=0.57 Score=41.79 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
..|+|.|++|+|||+|...+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998754
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.26 E-value=0.52 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 7899999999999999999853
No 444
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.18 E-value=0.5 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|+|.+||||||++..|..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999873
No 445
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.12 E-value=0.49 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-|+|.|++|+|||||++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999843
No 446
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.82 E-value=0.53 Score=48.28 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998854
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.71 E-value=0.58 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-|+|+|++|||||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 448
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.69 E-value=0.55 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|.|++|+|||+|+..+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999884
No 449
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.67 E-value=0.54 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-|+|.|++|+|||+|+..+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999998843
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.61 E-value=0.42 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
+...|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998874
No 451
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.60 E-value=0.54 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999999853
No 452
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.59 E-value=0.39 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|++|+|||||++-+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998853
No 453
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.58 E-value=6.7 Score=39.22 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
+++.|++|+|||+++..+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999743
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.56 E-value=0.5 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
-++|+|+.|+|||||++-+++-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999999864
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.46 E-value=0.55 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++-+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999999864
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.40 E-value=0.53 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..-|+|+|.+|||||||.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999974
No 457
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.38 E-value=4.1 Score=42.60 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
-|+|.|++|+|||+|+..++.
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 577899999999999999884
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.26 E-value=0.72 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-|+|+|++|||||||..+|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999999843
No 459
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.24 E-value=0.77 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
....|+|.|++|+|||+|+..+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999999853
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.22 E-value=0.61 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999984
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.19 E-value=0.44 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
=.++|+|++|+|||||++-+.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3889999999999999998874
No 462
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.17 E-value=0.6 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-|+|+|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999984
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.11 E-value=0.6 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.--|+|+|.+||||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999998884
No 464
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.78 E-value=0.89 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
.-.|+|+|++|+|||+|+..+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999998853
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.75 E-value=0.78 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..|+|.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.73 E-value=0.61 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
--+.|+|++|+|||||+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999965
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.65 E-value=0.52 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|.|++|+|||+++..+++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988874
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.57 E-value=0.87 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-|+|+|++|||||+|..+|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3588999999999999999984
No 469
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.48 E-value=0.76 Score=43.51 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.-|+|.|++|+|||||.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999999964
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.36 E-value=0.4 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999987764
No 471
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.25 E-value=0.46 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.++|+|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999998874
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.17 E-value=0.71 Score=50.89 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999864
No 473
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.13 E-value=0.65 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~~ 86 (592)
=.++|+|+.|+|||||++-+.+-.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 378999999999999999998643
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.02 E-value=0.62 Score=51.42 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+++-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999854
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.99 E-value=0.69 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
+.|+|+|.+|+||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.95 E-value=0.77 Score=43.71 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy1524 64 KVVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~ 83 (592)
-.+|+|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999876
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.88 E-value=0.59 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
-.|+|.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999884
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.62 E-value=0.47 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999873
No 479
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.44 E-value=0.73 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
++|.|++|+|||+|++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998853
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.37 E-value=0.73 Score=47.10 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
++|.|++|+||||++..+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999854
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.12 E-value=0.73 Score=50.43 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy1524 65 VVVMGGPKVGKSSIIHRFL 83 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~ 83 (592)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 482
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.10 E-value=0.75 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
--++|+|++|+|||||+..|+-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999998873
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=80.93 E-value=0.8 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
..-|+|+|++|+|||||+..|+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 357999999999999999999964
No 484
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.87 E-value=0.87 Score=43.49 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~ 84 (592)
--++|.|++|+|||+|+.+++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3688999999999999998873
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.86 E-value=0.76 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|+..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999843
No 486
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.84 E-value=0.84 Score=51.14 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 487
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.72 E-value=0.79 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 63 HKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 63 iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
-.|+|.|++|+|||+|+..+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999854
No 488
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.55 E-value=0.82 Score=46.33 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|.|++|+|||+|+..+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 489
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.52 E-value=0.81 Score=46.94 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~ 84 (592)
.|+|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999885
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.44 E-value=0.43 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
.|+|.|++|+|||+|+..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999999853
No 491
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.26 E-value=1 Score=44.31 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
..+++.|+|.+||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457999999999999999999974
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.24 E-value=1.1 Score=43.13 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...-|+|.|.+||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
No 493
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=80.14 E-value=0.2 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy1524 65 VVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 65 IvIvG~~nVGKSSLInrL~~~ 85 (592)
++|+|++|+|||||++.++.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999998854
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.10 E-value=0.94 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
.-.|+|.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998874
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.08 E-value=0.86 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...|+|.|++|+|||+|+..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999984
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=80.01 E-value=0.67 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524 62 RHKVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 62 ~iKIvIvG~~nVGKSSLInrL~~~ 85 (592)
...|+|+|.+|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357999999999999999998843
No 497
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=80.00 E-value=0.34 Score=46.74 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524 336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK 378 (592)
Q Consensus 336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~ak 378 (592)
+.|..+++...+ .++++.|+|+|||.+.||..+|++++....
T Consensus 134 r~V~~~e~~~~a-~~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 134 RQVSIEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp CCSCHHHHHHHH-HHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred CcccHHHHhhHH-HHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 456666666555 567889999999999999999999886654
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.76 E-value=0.9 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYNT 86 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~~ 86 (592)
.++|+|+.|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998643
No 499
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.53 E-value=1 Score=48.99 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy1524 64 KVVVMGGPKVGKSSIIHRFLYN 85 (592)
Q Consensus 64 KIvIvG~~nVGKSSLInrL~~~ 85 (592)
+++|+|++|+|||||++.++.+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 7999999999999999998854
No 500
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.51 E-value=0.72 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524 61 TRHKVVVMGGPKVGKSSIIHRFLY 84 (592)
Q Consensus 61 ~~iKIvIvG~~nVGKSSLInrL~~ 84 (592)
...-|+|.|.+||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
Done!