RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1524
(592 letters)
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 153 bits (389), Expect = 5e-44
Identities = 68/267 (25%), Positives = 101/267 (37%), Gaps = 99/267 (37%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
++V V G VGKSS++ RF+ TF Y T+E+ + + S + L I
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQI-------- 55
Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
D T +++FPAM+
Sbjct: 56 -----------------TD------------------------------TTGSHQFPAMQ 68
Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA-VPIVVVGNKSDLADENRQV 241
LSIS AFILVY+I S EE++ I + I E K +PI++VGNK D + R+V
Sbjct: 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-REV 127
Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
E++ + W+ F+E SAK N N+ +
Sbjct: 128 Q------------------------------SSEAEALAR-TWKCAFMETSAKLNHNVKE 156
Query: 302 VFKELLVQAKVKYNLSPALRRRRRQSL 328
+F+ELL +RR SL
Sbjct: 157 LFQELLNLE-----------KRRTVSL 172
Score = 41.7 bits (99), Expect = 1e-04
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 338 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 395
V E++ + W+ F+E SAK N N+ ++F+ELL +RR SL
Sbjct: 127 VQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQELLNLE-----------KRRTVSL 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 150 bits (381), Expect = 8e-43
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 87/249 (34%)
Query: 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
+KVVV+G VGKS++ +F+ TF KY TIE+ + ++ ++ L+I
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEI------ 55
Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
LD T T +F +
Sbjct: 56 -------------------LD------------------------------TAGTEQFAS 66
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
MR L I + FILVY++ + SF++I+ +RD I K VP+++VGNK DL E R+
Sbjct: 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE-RE 125
Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
V + G + A + W F+E SAK T +
Sbjct: 126 VSSSEG--RAL---------AEE--------------------WGCPFMETSAKSKTMVD 154
Query: 301 QVFKELLVQ 309
++F E++ Q
Sbjct: 155 ELFAEIVRQ 163
Score = 39.0 bits (92), Expect = 0.001
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 350 DWENGFVEASAKDNTNITQVFKELLVQ 376
+W F+E SAK T + ++F E++ Q
Sbjct: 137 EWGCPFMETSAKSKTMVDELFAEIVRQ 163
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 151 bits (383), Expect = 9e-43
Identities = 64/273 (23%), Positives = 98/273 (35%), Gaps = 89/273 (32%)
Query: 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
++VVV G VGKSS++ RF+ TF Y TIE+ + + S + L I
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQI---- 60
Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
D T +++F
Sbjct: 61 ---------------------TD------------------------------TTGSHQF 69
Query: 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGNKSDLADE 237
PAM+ LSIS AFILV+++ S EE+ I I + K + +P+++VGNK D
Sbjct: 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE--T 127
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
R+VD A + W+ F+E SAK N
Sbjct: 128 QREVDTREA-----------QAVAQE--------------------WKCAFMETSAKMNY 156
Query: 298 NITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
N+ ++F+ELL + +R +
Sbjct: 157 NVKELFQELLTLETRRNMSLNIDGKRSGKQKRT 189
Score = 44.5 bits (106), Expect = 3e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 397
+W+ F+E SAK N N+ ++F+ELL + +R +
Sbjct: 142 EWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRT 189
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 148 bits (377), Expect = 3e-42
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 86/249 (34%)
Query: 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
+K+VV+G VGKS++ +F+ F KY TIE+ + + ++ L+I
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI------ 55
Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
LD T T +F A
Sbjct: 56 -------------------LD------------------------------TAGTEQFTA 66
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
MR L + + F LVY+I ++F +++ +R+ I K + VP+++VGNK DL DE R
Sbjct: 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE-RV 125
Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
V G Q A Q F+E+SAK N+
Sbjct: 126 VGKEQG--QNL---------ARQWCNCA-------------------FLESSAKSKINVN 155
Query: 301 QVFKELLVQ 309
++F +L+ Q
Sbjct: 156 EIFYDLVRQ 164
Score = 37.5 bits (88), Expect = 0.005
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 351 WEN-GFVEASAKDNTNITQVFKELLVQ 376
W N F+E+SAK N+ ++F +L+ Q
Sbjct: 138 WCNCAFLESSAKSKINVNEIFYDLVRQ 164
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 143 bits (363), Expect = 4e-40
Identities = 64/275 (23%), Positives = 100/275 (36%), Gaps = 97/275 (35%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDIL 115
HK+VV+GG VGKS++ +F+ + F Y TIE+ + + S++G+ +LDI
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI- 61
Query: 116 DTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCST 175
LD T
Sbjct: 62 ------------------------LD------------------------------TAGQ 67
Query: 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
EF AMR + + F+LV+AI+D SF E+ + I K P+V+VGNK+DL
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127
Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
+ RQV + + + EASAK
Sbjct: 128 SQ-RQVPRSEA--SAF---------GAS--------------------HHVAYFEASAKL 155
Query: 296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
N+ + F++L+ +R+ + Q LPP
Sbjct: 156 RLNVDEAFEQLVRA----------VRKYQEQELPP 180
Score = 42.9 bits (102), Expect = 8e-05
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 397
+ EASAK N+ + F++L+ +R+ + Q LPP
Sbjct: 143 SHHVAYFEASAKLRLNVDEAFEQLVRA----------VRKYQEQELPP 180
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 136 bits (344), Expect = 2e-37
Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 87/257 (33%)
Query: 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
K+ ++G VGKSS+ +F+ F Y TIE + ++NG L +
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL------- 58
Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181
+D T +E+
Sbjct: 59 ------------------VD------------------------------TAGQDEYSIF 70
Query: 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
+ +ILVY++ SFE I++I + + +PI++VGNK DL E R +
Sbjct: 71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME-RVI 129
Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
G + A W F+E+SAK+N
Sbjct: 130 SYEEG--KAL---------AES--------------------WNAAFLESSAKENQTAVD 158
Query: 302 VFKELLVQAKVKYNLSP 318
VF+ ++++A+
Sbjct: 159 VFRRIILEAEKMDGACS 175
Score = 36.3 bits (85), Expect = 0.010
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSP 385
F+E+SAK+N VF+ ++++A+
Sbjct: 145 FLESSAKENQTAVDVFRRIILEAEKMDGACS 175
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 135 bits (343), Expect = 3e-37
Identities = 63/268 (23%), Positives = 101/268 (37%), Gaps = 89/268 (33%)
Query: 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
T +K+VV+G VGKS++ + + N F +Y TIE+ + + ++G LDI
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI------ 56
Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
LD T E+ A
Sbjct: 57 -------------------LD------------------------------TAGQEEYSA 67
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
MR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNK DL +R
Sbjct: 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRT 125
Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
VD Q A + F+E SAK +
Sbjct: 126 VDTKQA--QDL---------ARS--------------------YGIPFIETSAKTRQGVD 154
Query: 301 QVFKELLVQ-AKVKYNLSPALRRRRRQS 327
F L+ + K K +S ++++++S
Sbjct: 155 DAFYTLVREIRKHKEKMSKDGKKKKKKS 182
Score = 39.5 bits (93), Expect = 0.001
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSK 409
F+E SAK + F L+ + R+ ++ + K+K
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI-----------RKHKEKMSKDGKKKKKKSKTK 185
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 132 bits (336), Expect = 1e-36
Identities = 57/247 (23%), Positives = 88/247 (35%), Gaps = 88/247 (35%)
Query: 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
T +K+VV+G VGKS++ + + N F + TIE+ + + ++G LDI
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDI------ 55
Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
LD T E+ A
Sbjct: 56 -------------------LD------------------------------TAGQEEYSA 66
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
MR + + + F+ V+AI++ SFE+I R+ I K S VP+V+VGNKSDL R
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL--AART 124
Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
V+ Q A + ++E SAK +
Sbjct: 125 VESRQA--QDL---------ARS--------------------YGIPYIETSAKTRQGVE 153
Query: 301 QVFKELL 307
F L+
Sbjct: 154 DAFYTLV 160
Score = 35.9 bits (84), Expect = 0.014
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 350 DWENGFVEASAKDNTNITQVFKELL 374
+ ++E SAK + F L+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLV 160
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 134 bits (340), Expect = 1e-36
Identities = 55/280 (19%), Positives = 99/280 (35%), Gaps = 87/280 (31%)
Query: 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDI 114
+ HKV+++G VGKS++ +F+Y+ F Y+ T + + + ++G +++DI
Sbjct: 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 66
Query: 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCS 174
LD T
Sbjct: 67 -------------------------LD------------------------------TAG 71
Query: 175 TNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
++ A+R S + F+ V++I + SF R+ I K VP ++VGNKSDL
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
D+ RQV + A Q W +VE SAK
Sbjct: 132 EDK-RQVSVEEA-----------KNRAEQ--------------------WNVNYVETSAK 159
Query: 295 DNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHS 334
N+ +VF +L+ + + + + +++ +
Sbjct: 160 TRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRI 199
Score = 37.2 bits (87), Expect = 0.006
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHS 401
+VE SAK N+ +VF +L+ + + + + +++ +
Sbjct: 153 YVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRI 199
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 132 bits (334), Expect = 5e-36
Identities = 54/269 (20%), Positives = 90/269 (33%), Gaps = 88/269 (32%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
S S + +K+VV+G VGKS++ +F F Y TIE+ + + +
Sbjct: 2 PLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI 61
Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
+ LD+ LD
Sbjct: 62 DNQWAILDV-------------------------LD------------------------ 72
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
T EF AMR + + D F++VY++ D SFE + I K + P+
Sbjct: 73 ------TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
++V NK DL R+V G + A + +
Sbjct: 127 ILVANKVDLMHL-RKVTRDQG--KEM---------ATK--------------------YN 154
Query: 286 NGFVEASAKDNT-NITQVFKELLVQAKVK 313
++E SAKD N+ + F +L+ + +
Sbjct: 155 IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
Score = 31.4 bits (72), Expect = 0.55
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 355 FVEASAKDNT-NITQVFKELLVQAKVK 380
++E SAKD N+ + F +L+ + +
Sbjct: 157 YIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 125 bits (316), Expect = 2e-33
Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 92/269 (34%)
Query: 48 SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
SS E+ +G + ++G GKS++ +FL F +Y +E+ + + +++
Sbjct: 8 SSGRENLYFQG-PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDH 66
Query: 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLT 167
+ L + +D
Sbjct: 67 QPVHLRV-------------------------MD-------------------------- 75
Query: 168 SLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA--VPI 225
T + ++ A AF++VY++D SF+ + + T +P
Sbjct: 76 ----TADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA 130
Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
+++GNK D+A RQV G A + +
Sbjct: 131 LLLGNKLDMAQY-RQVTKAEG-----------VALAGR--------------------FG 158
Query: 286 NGFVEASAKDN-TNITQVFKELLVQAKVK 313
F E SA + ++ VF E + +A+ +
Sbjct: 159 CLFFEVSACLDFEHVQHVFHEAVREARRE 187
Score = 32.6 bits (75), Expect = 0.20
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 350 DWENGFVEASAKDN-TNITQVFKELLVQAKVK 380
+ F E SA + ++ VF E + +A+ +
Sbjct: 156 RFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 121 bits (307), Expect = 1e-32
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 98/262 (37%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
+KV+++G P VGKS++ F + ++G L +
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMV-------- 53
Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
D + +
Sbjct: 54 -----------------YD------------------------------IWEQDGGRWLP 66
Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
++ DA+++VY++ D SFE+ +R + + + VPI++VGNKSDL R+V
Sbjct: 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS-REVS 125
Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
+ G CA ++ F+E SA + N+ +
Sbjct: 126 VDEG-----------RACAVV--------------------FDCKFIETSAALHHNVQAL 154
Query: 303 FKELLVQAKVKYNLSPALRRRR 324
F+ ++ Q +R RR
Sbjct: 155 FEGVVRQ----------IRLRR 166
Score = 36.3 bits (85), Expect = 0.011
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRR 391
F+E SA + N+ +F+ ++ Q +R RR
Sbjct: 140 FIETSAALHHNVQALFEGVVRQ----------IRLRR 166
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 118 bits (299), Expect = 2e-31
Identities = 42/268 (15%), Positives = 80/268 (29%), Gaps = 107/268 (39%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDT 117
KV+++G VGKS++ F ++ E D ++ + L +
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE----DTYERRIMVDKEEVTLIV--- 55
Query: 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE 177
D +
Sbjct: 56 ----------------------YD------------------------------IWEQGD 63
Query: 178 FPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
++ + + DAF++V+++ D SF ++ + + +P+++VGNKSDLA
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123
Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
R+V L G A + +E SA +
Sbjct: 124 S-REVSLEEG-----------RHLAGTL-SCK-------------------HIETSAALH 151
Query: 297 TNITQVFKELLVQAKVKYNLSPALRRRR 324
N ++F+ + Q +R RR
Sbjct: 152 HNTRELFEGAVRQ----------IRLRR 169
Score = 35.2 bits (82), Expect = 0.026
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRR 391
+E SA + N ++F+ + Q +R RR
Sbjct: 143 HIETSAALHHNTRELFEGAVRQ----------IRLRR 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 108 bits (271), Expect = 3e-27
Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 84/264 (31%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
+ S + SSE +T ++VV++G VGKS++ + F+ + +
Sbjct: 21 QSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANI-----FAGVHDSMDSD-------- 67
Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
+ GE + + + +D + D+
Sbjct: 68 ---------CEVLGEDTYE-----------RTLMVD--------GESATIILLDMW---- 95
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
NE+ + + DA+++VY+I D SFE+ +R + + + +PI
Sbjct: 96 -----ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148
Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
++VGNKSDL R+V ++ G CA ++
Sbjct: 149 ILVGNKSDLVRC-REVSVSEG-----------RACAVV--------------------FD 176
Query: 286 NGFVEASAKDNTNITQVFKELLVQ 309
F+E SA N+ ++F+ ++ Q
Sbjct: 177 CKFIETSAAVQHNVKELFEGIVRQ 200
Score = 35.4 bits (82), Expect = 0.028
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 355 FVEASAKDNTNITQVFKELLVQ 376
F+E SA N+ ++F+ ++ Q
Sbjct: 179 FIETSAAVQHNVKELFEGIVRQ 200
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 108 bits (271), Expect = 4e-27
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T +E+ + I ++LVY++ +SF+ I + + E T VP+V+VGNK
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
+DL+ E R+V G + A W F+E+
Sbjct: 139 ADLSPE-REVQAVEG--KKL---------AES--------------------WGATFMES 166
Query: 292 SAKDNTNITQVFKELLVQ 309
SA++N +F +++ +
Sbjct: 167 SARENQLTQGIFTKVIQE 184
Score = 69.5 bits (171), Expect = 7e-14
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
S+ EN KVV++G VGK+S+ H+F+ FS Y T+E + + ++
Sbjct: 8 SSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTL 67
Query: 106 NGVHLKLDILDTSG 119
L ++DT+G
Sbjct: 68 GKDEFHLHLVDTAG 81
Score = 36.4 bits (85), Expect = 0.013
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 355 FVEASAKDNTNITQVFKELLVQ 376
F+E+SA++N +F +++ +
Sbjct: 163 FMESSARENQLTQGIFTKVIQE 184
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 106 bits (267), Expect = 5e-27
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + A Q W +VE
Sbjct: 119 SDLEDK-RQVSVEEA--KNR---------ADQ--------------------WNVNYVET 146
Query: 292 SAKDNTNITQVFKELLVQ 309
SAK N+ +VF +L+ +
Sbjct: 147 SAKTRANVDKVFFDLMRE 164
Score = 67.1 bits (165), Expect = 3e-13
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
HKV+++G VGKS++ +F+Y+ F Y+ T + + + ++G +++DILDT+G
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
Score = 36.3 bits (85), Expect = 0.010
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 355 FVEASAKDNTNITQVFKELLVQ 376
+VE SAK N+ +VF +L+ +
Sbjct: 143 YVETSAKTRANVDKVFFDLMRE 164
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 104 bits (263), Expect = 3e-26
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T ++ A+R S + F+ V++I + SF R+ I K VP ++VGNK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
SDL D+ RQV + + A Q W +VE
Sbjct: 133 SDLEDK-RQVSVEEA--KNR---------AEQ--------------------WNVNYVET 160
Query: 292 SAKDNTNITQVFKELLVQ 309
SAK N+ +VF +L+ +
Sbjct: 161 SAKTRANVDKVFFDLMRE 178
Score = 69.5 bits (171), Expect = 7e-14
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKL 112
G S+ HKV+++G VGKS++ +F+Y+ F Y+ T + + + ++G +++
Sbjct: 9 GGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 68
Query: 113 DILDTSG 119
DILDT+G
Sbjct: 69 DILDTAG 75
Score = 36.4 bits (85), Expect = 0.012
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 355 FVEASAKDNTNITQVFKELLVQ 376
+VE SAK N+ +VF +L+ +
Sbjct: 157 YVETSAKTRANVDKVFFDLMRE 178
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 103 bits (260), Expect = 6e-26
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 42/151 (27%)
Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ + + A+++VY+I D SFE +R + T + VPI++VGNK+DLA
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
R+V + G CA ++ F+E SA
Sbjct: 126 C-REVSVEEG-----------RACAVV--------------------FDCKFIETSATLQ 153
Query: 297 TNITQVFKELLVQAKVKYNLSPALRRRRRQS 327
N+ ++F+ ++ Q LR RRR S
Sbjct: 154 HNVAELFEGVVRQ----------LRLRRRDS 174
Score = 62.9 bits (154), Expect = 1e-11
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
++VV++G P VGK+S+ F +++ E+++ +++G L ++DT
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQS 394
F+E SA N+ ++F+ ++ Q LR RRR S
Sbjct: 145 FIETSATLQHNVAELFEGVVRQ----------LRLRRRDS 174
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 103 bits (259), Expect = 9e-26
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 33/136 (24%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
T E+ AMR + + + F+ V+AI++ SF +I L R+ I K S VP+V+VGNK
Sbjct: 76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNK 135
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
DL R VD A + F+E
Sbjct: 136 CDL--PTRTVDTKQA--HEL---------AKS--------------------YGIPFIET 162
Query: 292 SAKDNTNITQVFKELL 307
SAK + F L+
Sbjct: 163 SAKTRQGVEDAFYTLV 178
Score = 66.1 bits (162), Expect = 9e-13
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 48 SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
SS E+ +G T +K+VV+G VGKS++ + + N F +Y TIE+ + + ++G
Sbjct: 8 SSGRENLYFQG-MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG 66
Query: 108 VHLKLDILDTSG 119
LDILDT+G
Sbjct: 67 ETCLLDILDTAG 78
Score = 35.7 bits (83), Expect = 0.021
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 355 FVEASAKDNTNITQVFKELL 374
F+E SAK + F L+
Sbjct: 159 FIETSAKTRQGVEDAFYTLV 178
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 101 bits (252), Expect = 3e-25
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 396 PPVQHSPN-------PSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDE-IVPST 447
PN SLK +G++ E F W Y+Y+ +G E L+ L I + ++P T
Sbjct: 32 HEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKT 91
Query: 448 LKRQARTTDASKVP---RQMTQRPDGGRGAD-DRMSYRKGPQGVDKKADVGAGSTEVEFK 503
K + + R Q GGR + D + R +G ++ + A
Sbjct: 92 FKASNVNFISKEEDEEERPRRQFNKGGRTGERDGRNKRGVGRGTRREGEEAAKEEGAAET 151
Query: 504 GYGGLAS 510
G +
Sbjct: 152 AQGNQET 158
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 102 bits (256), Expect = 3e-25
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
E R + + F+LVY I D SFEE+ +++ + E K V +++VGNK+DL
Sbjct: 87 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
RQV G A + F E SA
Sbjct: 147 S-RQVSTEEG-----------EKLATE--------------------LACAFYECSACTG 174
Query: 297 -TNITQVFKELL 307
NIT++F EL
Sbjct: 175 EGNITEIFYELC 186
Score = 74.2 bits (183), Expect = 2e-15
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 39 NRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM 98
+ + V +EN S K+ + G VGKS+++ RFL F +Y T+E
Sbjct: 5 HHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 64
Query: 99 HHEDFSMNGVHLKLDILDTSG-EQS 122
+ +++ + ++ILDT+G E +
Sbjct: 65 YRHQATIDDEVVSMEILDTAGQEDT 89
Score = 31.4 bits (72), Expect = 0.47
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 350 DWENGFVEASAKDN-TNITQVFKELL 374
+ F E SA NIT++F EL
Sbjct: 161 ELACAFYECSACTGEGNITEIFYELC 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 97.8 bits (244), Expect = 1e-23
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 37/152 (24%)
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
+ + DA+++VY+I D SFE+ +R + + + +PI++VGNKSDL
Sbjct: 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR-- 130
Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
+V + ++ F+E SA N+
Sbjct: 131 -----------------------------EVSVSEGRAXAV-VFDXKFIETSAAVQHNVK 160
Query: 301 QVFKELLVQAKVKYNLSPALRRR-----RRQS 327
++F+ ++ Q +++ + RR R++S
Sbjct: 161 ELFEGIVRQVRLRRDSKEKNERRLAYQKRKES 192
Score = 49.2 bits (118), Expect = 5e-07
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR--TIEEMHHEDFSMNG---VHLK 111
E T ++VV++G VGKS++ + F S E+ + ++G +
Sbjct: 1 EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 112 LDILDTSGE 120
LD+ + GE
Sbjct: 61 LDMWENKGE 69
Score = 40.7 bits (96), Expect = 5e-04
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRR-----RRQS 394
++ F+E SA N+ ++F+ ++ Q +++ + RR R++S
Sbjct: 143 VFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKES 192
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 97.3 bits (243), Expect = 2e-23
Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 33/144 (22%)
Query: 177 EFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
+ +R + + DAF++V+++ D SF ++ + + +P+++VGNKSDLA
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
R+V L G A + +E SA
Sbjct: 144 RS-REVSLEEG-----------RHLAGTL-SCK-------------------HIETSAAL 171
Query: 296 NTNITQVFKELLVQAKVKYNLSPA 319
+ N ++F+ + Q +++ + A
Sbjct: 172 HHNTRELFEGAVRQIRLRRGRNHA 195
Score = 67.6 bits (166), Expect = 3e-13
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 48 SSENESGSSEG-HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF--- 103
SS E+ +G D KV+++G VGKS++ F ++ ED
Sbjct: 8 SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP----EDTYER 63
Query: 104 --SMNGVHLKLDILDTSG 119
++ + L + D
Sbjct: 64 RIMVDKEEVTLVVYDIWE 81
Score = 35.3 bits (82), Expect = 0.027
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPA 386
+E SA + N ++F+ + Q +++ + A
Sbjct: 164 HIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 94.9 bits (237), Expect = 8e-23
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 36/136 (26%)
Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
E DA + V++++D SF+ + + + ++ VP+V+VG + ++
Sbjct: 79 ELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 237 EN-RQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
N R +D + + + + + E A
Sbjct: 134 ANPRVIDDSRA--RKL---------STDLKRCT-------------------YYETCATY 163
Query: 296 NTNITQVFKELLVQAK 311
N+ +VF+++ +
Sbjct: 164 GLNVERVFQDVAQKVV 179
Score = 59.1 bits (144), Expect = 2e-10
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
KV ++G GKS+++HR+L T+ + ++ ++G L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGGRFKKEIVVDGQSYLLLIRDEGG 76
Score = 35.2 bits (82), Expect = 0.029
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 355 FVEASAKDNTNITQVFKELLVQAK 378
+ E A N+ +VF+++ +
Sbjct: 156 YYETCATYGLNVERVFQDVAQKVV 179
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3u5g_K
Length = 105
Score = 86.5 bits (214), Expect = 9e-21
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTD 456
SL SKG+V QF+W++YY+ +T +G+E LR LN+P+ IVP T ++ T
Sbjct: 48 SLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQ 99
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 86.6 bits (214), Expect = 3e-19
Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 47/251 (18%)
Query: 69 GGPKVGKSSIIHRFL---YNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKG 125
G +GKS + +RF+ + F + + +N H + +
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 126 LKCGAVLWGPKKWGLDK-VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCS-----TNEFP 179
K + ++ D+ R+ +P + + L C+ +F
Sbjct: 95 CKM--HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE 152
Query: 180 AMRALSIS-SADAFILVYAI--DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ D F+L + +F++ +++ A T PIVVV K D
Sbjct: 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212
Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
E R + + L VE SA+ N
Sbjct: 213 E-RYIRDAHTFALSK-KNLQ-------------------------------VVETSARSN 239
Query: 297 TNITQVFKELL 307
N+ F L+
Sbjct: 240 VNVDLAFSTLV 250
Score = 36.9 bits (85), Expect = 0.011
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 355 FVEASAKDNTNITQVFKELL 374
VE SA+ N N+ F L+
Sbjct: 231 VVETSARSNVNVDLAFSTLV 250
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 85.5 bits (212), Expect = 3e-19
Identities = 52/281 (18%), Positives = 89/281 (31%), Gaps = 91/281 (32%)
Query: 54 GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLD 113
GS K V +G VGK+ ++ + N F Y T+ + + +++G + L
Sbjct: 1 GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLG 60
Query: 114 ILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTC 173
+ DT+G++ L RP++Y
Sbjct: 61 LWDTAGQEDYSRL-------------------------RPLSY----------------- 78
Query: 174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVV 228
AD F+L +++ S+E + +R + VPIV+V
Sbjct: 79 -------------RGADIFVLAFSLISKASYENVLKKWMPELRRF------APNVPIVLV 119
Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288
G K DL D+ + T G QI +
Sbjct: 120 GTKLDLRDDKGYLADHTNVI-TSTQGE---ELRKQIGAAA-------------------Y 156
Query: 289 VEASAKDNTNITQVFKELLVQA--KVKYNLSPALRRRRRQS 327
+E S+K N+ VF + + P R+ R+S
Sbjct: 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRS 197
Score = 30.0 bits (68), Expect = 1.8
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 325 RQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA--KVKYN 382
R + N + E + + ++E S+K N+ VF + +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
Query: 383 LSPALRRRRRQS 394
P R+ R+S
Sbjct: 186 EVPRRRKNHRRS 197
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 82.1 bits (203), Expect = 4e-18
Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 76/262 (29%)
Query: 45 VSASSENESGSSEGHDTRH-KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF 103
+ G + G + R K V++G VGK+S++ + N + +Y T +
Sbjct: 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV 61
Query: 104 SMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLP 163
S++G ++L + DT+G+ DK+ RP+ Y
Sbjct: 62 SVDGRPVRLQLCDTAGQDE-----------------FDKL--------RPLCY------- 89
Query: 164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223
++ D F+L +++ P+SF+ +
Sbjct: 90 -----------------------TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-A 125
Query: 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD 283
PI++VG +SDL ++ + + + VP + + + +
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKP-------------------VPEEAAKLLAEEI 166
Query: 284 WENGFVEASAKDNTNITQVFKE 305
++E SA N+ +VF
Sbjct: 167 KAASYIECSALTQKNLKEVFDA 188
Score = 30.9 bits (70), Expect = 0.74
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR + + + PVP + + + + ++E SA N+ +VF
Sbjct: 136 LREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 80.8 bits (200), Expect = 9e-18
Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 95/269 (35%)
Query: 47 ASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN 106
+ +G E K+VV+G VGK+ ++ F Y T+ E
Sbjct: 8 SDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYK 67
Query: 107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKL 166
L + DT+G++ L RP++Y
Sbjct: 68 NEEFILHLWDTAGQEEYDRL-------------------------RPLSY---------- 92
Query: 167 TSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAST 221
+ +D +L +A+++ SF+ I I+ +
Sbjct: 93 --------------------ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY------ID 126
Query: 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281
V+VG K DL + T G ++
Sbjct: 127 TAKTVLVGLKVDLRKDGSD-------DVTKQEGD---DLCQKLGCV-------------- 162
Query: 282 VDWENGFVEASAKDNTNITQVFKELLVQA 310
++EAS+ + +VF++ +
Sbjct: 163 -----AYIEASSVAKIGLNEVFEKSVDCI 186
Score = 28.8 bits (65), Expect = 3.5
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 354 GFVEASAKDNTNITQVFKELLVQA 377
++EAS+ + +VF++ +
Sbjct: 163 AYIEASSVAKIGLNEVFEKSVDCI 186
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 80.0 bits (198), Expect = 1e-17
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 49/156 (31%)
Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA----VPIVVVGNKS 232
+ ADA I V++++D NSF+ + + + + + +V ++
Sbjct: 66 DAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 233 DLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292
+ R V ++ + E
Sbjct: 121 SASSP-RVVG------------------------------DARARALXADMKRCSYYETX 149
Query: 293 AKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 328
A N+ +VF+E+ + + R++Q L
Sbjct: 150 ATYGLNVDRVFQEVAQK---------VVTLRKQQQL 176
Score = 62.6 bits (153), Expect = 1e-11
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
++ V+G + GKSS+IHRFL ++ ++T E + ++ ++G + I + +G
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Score = 32.6 bits (75), Expect = 0.18
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 338 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 395
V ++ + E A N+ +VF+E+ + + R++Q L
Sbjct: 128 VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK---------VVTLRKQQQL 176
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 80.2 bits (198), Expect = 1e-17
Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 85/263 (32%)
Query: 48 SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
SS S R K+V++G GK+ ++ F + F Y T+ E + D ++G
Sbjct: 11 SSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDG 70
Query: 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLT 167
++L + DT+G++ L RP++Y
Sbjct: 71 KQVELALWDTAGQEDYDRL-------------------------RPLSY----------- 94
Query: 168 SLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTA 222
D ++ ++ID P+S E I ++
Sbjct: 95 -------------------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------CPN 129
Query: 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV 282
VPI++VGNK DL + Q + A++IS
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF--------------- 174
Query: 283 DWENGFVEASAKDNTNITQVFKE 305
G++E SAK + +VF+
Sbjct: 175 ----GYLECSAKTKEGVREVFEM 193
Score = 30.5 bits (69), Expect = 1.1
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR+ + PV + + G++E SAK + +VF+
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 79.0 bits (195), Expect = 5e-17
Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 88/269 (32%)
Query: 42 LNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE 101
+ V +EN S R K+VV+G GK+ ++ F + F Y T+ E +
Sbjct: 8 SSGVDLGTENLYFQSM---IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA 64
Query: 102 DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQ 161
D ++G ++L + DT+G++ D++ RP++Y
Sbjct: 65 DIEVDGKQVELALWDTAGQE-----------------DYDRL--------RPLSY----- 94
Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFE 216
D ++ +++D P+S E I ++
Sbjct: 95 -------------------------PDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--- 126
Query: 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276
VPI++V NK DL + Q V D
Sbjct: 127 ---CPNVPIILVANKKDLRSDEHVRTELARMKQEP-------------------VRTDDG 164
Query: 277 ESVVQVDWENGFVEASAKDNTNITQVFKE 305
++ ++E SAK + +VF+
Sbjct: 165 RAMAVRIQAYDYLECSAKTKEGVREVFET 193
Score = 29.3 bits (66), Expect = 2.4
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR + PV D ++ ++E SAK + +VF+
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 79.0 bits (195), Expect = 5e-17
Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 85/266 (31%)
Query: 45 VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS 104
+ + K VV+G VGK+ ++ + N F +Y T+ + + +
Sbjct: 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
Query: 105 MNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPS 164
++G + L + DT+G++ L RP++Y
Sbjct: 73 VDGKPVNLGLWDTAGQEDYDRL-------------------------RPLSY-------- 99
Query: 165 KLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKA 219
D F++ +++ P SFE +R +R H
Sbjct: 100 ----------------------PQTDVFLICFSLVSPASFENVRAKWYPEVRHH------ 131
Query: 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV 279
PI++VG K DL D+ ++ T + Y ++
Sbjct: 132 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-------------------PITYPQGLAM 172
Query: 280 VQVDWENGFVEASAKDNTNITQVFKE 305
+ ++E SA + VF E
Sbjct: 173 AKEIGAVKYLECSALTQRGLKTVFDE 198
Score = 29.0 bits (65), Expect = 3.4
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR + + P+ Y ++ + ++E SA + VF E
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 78.2 bits (193), Expect = 6e-17
Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 89/248 (35%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
K V +G VGK+ ++ + NTF Y T+ + + +NG + L + DT+G++
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69
Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
L RP++Y
Sbjct: 70 NRL-------------------------RPLSY--------------------------- 77
Query: 184 LSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDL-ADE 237
AD FIL +++ S+E + ++ + + VPIV+VG K DL D+
Sbjct: 78 ---RGADVFILAFSLISKASYENVSKKWIPELKHY------APGVPIVLVGTKLDLRDDK 128
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
+D G T + G I ++E S+K
Sbjct: 129 QFFIDHPGAVPITTVQGEE---LKKLIGAP-------------------AYIECSSKSQE 166
Query: 298 NITQVFKE 305
N+ VF
Sbjct: 167 NVKGVFDA 174
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR ++ + P+ E + ++ ++E S+K N+ VF
Sbjct: 124 LRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 77.2 bits (190), Expect = 2e-16
Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 85/265 (32%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
S + S + K VV+G VGK+ ++ + + F +Y T+ + + ++
Sbjct: 2 SPGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV 61
Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
G L + DT+G++ L RP++Y
Sbjct: 62 GGKQYLLGLYDTAGQEDYDRL-------------------------RPLSY--------- 87
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAS 220
D F++ +++ +P SF+ ++ ++++ +
Sbjct: 88 ---------------------PMTDVFLICFSVVNPASFQNVKEEWVPELKEY------A 120
Query: 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280
VP +++G + DL D+ + + + + A +I
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC------------- 167
Query: 281 QVDWENGFVEASAKDNTNITQVFKE 305
+VE SA + VF E
Sbjct: 168 ------CYVECSALTQKGLKTVFDE 186
Score = 27.8 bits (62), Expect = 6.9
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR + P+ + + + + +VE SA + VF E
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 77.5 bits (191), Expect = 2e-16
Identities = 51/272 (18%), Positives = 86/272 (31%), Gaps = 91/272 (33%)
Query: 45 VSASSEN------ESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM 98
V +EN + KVV++G GK+S++ F F Y T+ E
Sbjct: 11 VDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER 70
Query: 99 HHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKT 158
+ + + G + L I DT+G+ D++ RP+ Y
Sbjct: 71 YMVNLQVKGKPVHLHIWDTAGQDD-----------------YDRL--------RPLFY-- 103
Query: 159 DVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDH 213
A +L + + PNSF+ I +
Sbjct: 104 ----------------------------PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
Query: 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
VPI+VVG K+DL + V+ V Y
Sbjct: 136 ------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP-------------------VTY 170
Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
+ + + ++E SA+ + N+ VF+E
Sbjct: 171 HRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
Score = 30.5 bits (69), Expect = 1.1
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR+ + ++ PV Y + + + ++E SA+ + N+ VF+E
Sbjct: 150 LRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 76.8 bits (189), Expect = 3e-16
Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 63/254 (24%)
Query: 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
+ +K V++G VGKSSI+ R +TF TI G +++ +
Sbjct: 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------GASFCTYVVNLN 52
Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
K D + + +++ + T +
Sbjct: 53 DINI-KNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKF-----DIWDTAGQERY 106
Query: 179 PAMRALSIS---SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
++ A I+V+ I + N+ + + + + K S+ I++V NK D
Sbjct: 107 ---ASIVPLYYRGATCAIVVFDISNSNTLDRAK---TWVNQLKISSNYIIILVANKIDK- 159
Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASA 293
QV V + +N F++ SA
Sbjct: 160 -NKFQV---------------------------------DILEVQKYAQDNNLLFIQTSA 185
Query: 294 KDNTNITQVFKELL 307
K TNI +F L
Sbjct: 186 KTGTNIKNIFYMLA 199
Score = 34.8 bits (80), Expect = 0.047
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
+N F++ SAK TNI +F L
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYMLA 199
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 75.2 bits (185), Expect = 1e-15
Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 86/266 (32%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
S S + + K+VV+G + GK++++H F + F Y T+ E + F +
Sbjct: 12 SGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI 71
Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
+ ++L + DTSG D V RP++Y
Sbjct: 72 DTQRIELSLWDTSGSPY-----------------YDNV--------RPLSY--------- 97
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAS 220
+DA ++ + I P + + + I++
Sbjct: 98 ---------------------PDSDAVLICFDISRPETLDSVLKKWKGEIQEF------C 130
Query: 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280
+++VG KSDL + + QT +S + A QI
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA------------- 177
Query: 281 QVDWENGFVEASAKDNTN-ITQVFKE 305
++E SA + N + +F
Sbjct: 178 ------TYIECSALQSENSVRDIFHV 197
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 72.2 bits (178), Expect = 5e-15
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 41/134 (30%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
AD +LVY + + +SFE I+ H + P V++GNK D + + V
Sbjct: 82 ADCCVLVYDVTNASSFENIKSWRDEFLVHA-NVNSPETFPFVILGNKIDAEESKKIV--- 137
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNITQ 301
+ +S ++ G SAK+ N+
Sbjct: 138 ------------------------------SEKSAQELAKSLGDIPLFLTSAKNAINVDT 167
Query: 302 VFKELLVQAKVKYN 315
F+E+ A +
Sbjct: 168 AFEEIARSALQQNQ 181
Score = 51.4 bits (124), Expect = 1e-07
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL----- 110
S KV+++G VGK+S++HR++ + +S +YK TI DF V +
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI----GADFLTKEVTVDGDKV 57
Query: 111 -KLDILDTSG 119
+ + DT+G
Sbjct: 58 ATMQVWDTAG 67
Score = 35.6 bits (83), Expect = 0.019
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYN 382
SAK+ N+ F+E+ A +
Sbjct: 154 LFLTSAKNAINVDTAFEEIARSALQQNQ 181
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 70.6 bits (173), Expect = 3e-14
Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 85/253 (33%)
Query: 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117
G K VV+G VGK+ ++ + N F +Y T+ + + + ++G + L + DT
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE 177
+G++ L RP++Y
Sbjct: 61 AGQEDYDRL-------------------------RPLSY--------------------- 74
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKS 232
D ++ +++ P SFE +R +R H PI++VG K
Sbjct: 75 ---------PQTDVSLICFSLVSPASFENVRAKWYPEVRHH------CPNTPIILVGTKL 119
Query: 233 DLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292
DL D+ ++ T + Y ++ + ++E S
Sbjct: 120 DLRDDKDTIEKLKEKKLT-------------------PITYPQGLAMAKEIGAVKYLECS 160
Query: 293 AKDNTNITQVFKE 305
A + VF E
Sbjct: 161 ALTQRGLKTVFDE 173
Score = 28.6 bits (64), Expect = 4.8
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 372
LR + + P+ Y ++ + ++E SA + VF E
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 70.1 bits (172), Expect = 4e-14
Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 86/252 (34%)
Query: 60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
+ + K+VV+G + GK++++H F + F Y T+ E + F ++ ++L + DTSG
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64
Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
+ RP++Y
Sbjct: 65 SPYYDNV-------------------------RPLSYP---------------------- 77
Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDL 234
+DA ++ + I P + + + I++ +++VG KSDL
Sbjct: 78 --------DSDAVLICFDISRPETLDSVLKKWKGEIQEF------CPNTKMLLVGCKSDL 123
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
+ + QT +S + A QI ++E SA
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA-------------------TYIECSAL 164
Query: 295 DNTN-ITQVFKE 305
+ N + +F
Sbjct: 165 QSENSVRDIFHV 176
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 68.7 bits (168), Expect = 2e-13
Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 71/205 (34%)
Query: 48 SSENESGSSEGHDT-----RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED 102
SS E+ +G R K+V++G + GK++++ + + Y T+ E +
Sbjct: 8 SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC 67
Query: 103 FSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQL 162
++L + DTSG + RP+ Y
Sbjct: 68 LETEEQRVELSLWDTSGSPYYDNV-------------------------RPLCY------ 96
Query: 163 PSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFET 217
S +DA +L + I P + + I D+
Sbjct: 97 ------------------------SDSDAVLLCFDISRPETVDSALKKWRTEILDY---- 128
Query: 218 KASTAVPIVVVGNKSDLADENRQVD 242
+ ++++G K+DL + +
Sbjct: 129 --CPSTRVLLIGCKTDLRTDLSTLM 151
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 67.2 bits (165), Expect = 3e-13
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 43/134 (32%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
+D +L +++DD SF+ + + + K + P V++GNK D+ RQV
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYA-DVKEPESFPFVILGNKIDI--SERQV--- 133
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNITQ 301
+TE +NG + E SAKD TN+
Sbjct: 134 ------------------------------STEEAQAWCRDNGDYPYFETSAKDATNVAA 163
Query: 302 VFKELLVQAKVKYN 315
F+E + + +
Sbjct: 164 AFEEAVRRVLATED 177
Score = 50.6 bits (122), Expect = 2e-07
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKL 112
G + KV+++G VGKSS+++R++ N F + TI +F +G + +
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI----GVEFLNKDLEVDGHFVTM 58
Query: 113 DILDTSG 119
I DT+G
Sbjct: 59 QIWDTAG 65
Score = 35.6 bits (83), Expect = 0.019
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYN 382
+ E SAKD TN+ F+E + + +
Sbjct: 150 YFETSAKDATNVAAAFEEAVRRVLATED 177
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 66.5 bits (163), Expect = 8e-13
Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 41/133 (30%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
AD +LV+ + PN+F+ + P VV+GNK DL ENRQV
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKIDL--ENRQV--- 134
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
T + +N + E SAK+ N+ Q
Sbjct: 135 -----------------------------ATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165
Query: 303 FKELLVQAKVKYN 315
F+ + A +
Sbjct: 166 FQTIARNALKQET 178
Score = 53.4 bits (129), Expect = 2e-08
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
+ KV+++G VGK+S++++++ FS +YK TI DF + +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVMVDDRLV 57
Query: 111 KLDILDTSG 119
+ I DT+G
Sbjct: 58 TMQIWDTAG 66
Score = 37.3 bits (87), Expect = 0.007
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKG 410
+ E SAK+ N+ Q F+ + A + + P++ N K+
Sbjct: 151 YFETSAKEAINVEQAFQTIARNALKQETEVEL----YNEFPEPIKLDKNERAKASA 202
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 65.3 bits (160), Expect = 2e-12
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 45/137 (32%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I + SF+ IR I +H AS V +++GNK D+ D+ RQV
Sbjct: 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEH-----ASADVEKMILGNKCDVNDK-RQV-- 131
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
+ E ++ + G F+E SAK N N+
Sbjct: 132 -------------------------------SKERGEKLALDYGIKFMETSAKANINVEN 160
Query: 302 VFKELLVQAKVKYNLSP 318
F L K K + +
Sbjct: 161 AFFTLARDIKAKMDKNW 177
Score = 48.7 bits (117), Expect = 8e-07
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
++ +D K++++G VGK+ ++ RF + F+ + TI DF + +G +
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI----GIDFKIRTIELDGKRI 57
Query: 111 KLDILDTSG 119
KL I DT+G
Sbjct: 58 KLQIWDTAG 66
Score = 36.8 bits (86), Expect = 0.008
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSP 385
+ G F+E SAK N N+ F L K K + +
Sbjct: 142 DYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 64.9 bits (159), Expect = 2e-12
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 45/137 (32%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A A +L+Y + + SF+ I+ I ++ A V ++++GNK D A E R V
Sbjct: 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEY-----AQHDVALMLLGNKVDSAHE-RVV-- 134
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
E ++ E G F+E SAK N+
Sbjct: 135 -------------------------------KREDGEKLAKEYGLPFMETSAKTGLNVDL 163
Query: 302 VFKELLVQAKVKYNLSP 318
F + + K + +P
Sbjct: 164 AFTAIAKELKRRSMKAP 180
Score = 43.7 bits (104), Expect = 4e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 54 GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YKRTIEEMHHEDFSM-----NG 107
+ +D KV+++G VGK+ ++ RF F + T+ DF +G
Sbjct: 2 SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV----GIDFRNKVLDVDG 57
Query: 108 VHLKLDILDTSG 119
V +KL + DT+G
Sbjct: 58 VKVKLQMWDTAG 69
Score = 37.5 bits (88), Expect = 0.004
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSP 385
E G F+E SAK N+ F + + K + +P
Sbjct: 145 EYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 64.5 bits (158), Expect = 3e-12
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 45/133 (33%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A F+L+Y I + SF ++ I+ + + +++VGNK DL DE R V
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTY-----SWDNAQVILVGNKCDLEDE-RVV--- 145
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
E ++ + G F EASAK+N N+ QV
Sbjct: 146 ------------------------------PAEDGRRLADDLGFEFFEASAKENINVKQV 175
Query: 303 FKELLVQAKVKYN 315
F+ L+ K N
Sbjct: 176 FERLVDVICEKMN 188
Score = 50.7 bits (122), Expect = 2e-07
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
+ G D K++++G VGK+S + R+ ++F+P + T+ DF +
Sbjct: 6 HHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKV 61
Query: 106 -----NGVHLKLDILDTSG 119
+ +KL I DT+G
Sbjct: 62 KTVYRHDKRIKLQIWDTAG 80
Score = 36.8 bits (86), Expect = 0.008
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYN 382
+ G F EASAK+N N+ QVF+ L+ K N
Sbjct: 156 DLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 64.1 bits (157), Expect = 3e-12
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 38/127 (29%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
A A +LV++ D SFE I R+ + + +P +V NK DL ++ +
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKV-VAEVGD-IPTALVQNKIDL-LDDSCI------- 127
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKEL 306
E + F S K++ N+++VFK L
Sbjct: 128 --------------------------KNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161
Query: 307 LVQAKVK 313
+ K
Sbjct: 162 AEKHLQK 168
Score = 53.7 bits (130), Expect = 1e-08
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKL 112
G + K+VV+G VGKSS+I R+ F+ YK+TI DF +N ++L
Sbjct: 1 GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI----GVDFLERQIQVNDEDVRL 56
Query: 113 DILDTSG 119
+ DT+G
Sbjct: 57 MLWDTAG 63
Score = 36.3 bits (85), Expect = 0.010
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
F S K++ N+++VFK L + K
Sbjct: 138 RLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 64.2 bits (157), Expect = 5e-12
Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 39/131 (29%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
AD +L+Y + SF IR I D A VPI++VGNK+D+ D
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-----AHETVPIMLVGNKADIRDTAATEGQK 155
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
VP E + G F E SAKD +NI +
Sbjct: 156 -------------------------CVPGHFGEKLAM---TYGALFCETSAKDGSNIVEA 187
Query: 303 FKELLVQAKVK 313
L + K +
Sbjct: 188 VLHLAREVKKR 198
Score = 54.2 bits (131), Expect = 1e-08
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
S S S +K+V+ G VGKSS + R N F T+ DF M
Sbjct: 12 SGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG----VDFQM 67
Query: 106 -----NGVHLKLDILDTSG 119
+G L + DT+G
Sbjct: 68 KTLIVDGERTVLQLWDTAG 86
Score = 36.1 bits (84), Expect = 0.016
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
G F E SAKD +NI + L + K +
Sbjct: 168 TYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 63.8 bits (156), Expect = 6e-12
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 40/130 (30%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
SA ILVY I +F+++ I + AS +++VGNK D + R++
Sbjct: 98 SAKGIILVYDITKKETFDDLPKWMKMIDKY-----ASEDAELLLVGNKLDCETD-REITR 151
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
G + + A QI+G F EASAKDN N+ ++F
Sbjct: 152 QQG--EKF---------AQQITGMR-------------------FCEASAKDNFNVDEIF 181
Query: 304 KELLVQAKVK 313
+L+ K
Sbjct: 182 LKLVDDILKK 191
Score = 52.2 bits (126), Expect = 6e-08
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
+S GS D + +V+++G VGK+S++ RF +TF K T+ DF +
Sbjct: 10 HSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV----GVDFKI 65
Query: 106 -----NGVHLKLDILDTSG 119
G ++L I DT+G
Sbjct: 66 KTVELRGKKIRLQIWDTAG 84
Score = 36.4 bits (85), Expect = 0.012
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVK 380
F EASAKDN N+ ++F +L+ K
Sbjct: 166 FCEASAKDNFNVDEIFLKLVDDILKK 191
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 63.3 bits (155), Expect = 6e-12
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 46/136 (33%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A ILVY I D +F I+ + +H A+ +++VGNKSD+ E R V
Sbjct: 75 GAMGIILVYDITDERTFTNIKQWFKTVNEH-----ANDEAQLLLVGNKSDM--ETRVV-- 125
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T + + E G F+E+SAK++ N+ +
Sbjct: 126 -------------------------------TADQGEALAKELGIPFIESSAKNDDNVNE 154
Query: 302 VFKELLVQAKVKYNLS 317
+F L + K + +
Sbjct: 155 IFFTLAKLIQEKIDSN 170
Score = 47.5 bits (114), Expect = 2e-06
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKLDILDTS 118
K++++G VGKS ++ RF+ + F+P + TI DF + NG +KL I DT+
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDTA 60
Query: 119 G 119
G
Sbjct: 61 G 61
Score = 36.4 bits (85), Expect = 0.010
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLS 384
E G F+E+SAK++ N+ ++F L + K + +
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 63.8 bits (156), Expect = 7e-12
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 45/131 (34%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A I+VY + D SF ++ I + AS V ++VGNK DL + + V
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-----ASENVNKLLVGNKCDLTTK-KVV--- 156
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+ + G F+E SAK+ TN+ Q
Sbjct: 157 ------------------------------DYTTAKEFADSLGIPFLETSAKNATNVEQS 186
Query: 303 FKELLVQAKVK 313
F + + K +
Sbjct: 187 FMTMAAEIKKR 197
Score = 52.3 bits (126), Expect = 7e-08
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 45 VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF- 103
+ S + +D K++++G VGKS ++ RF +T++ Y TI DF
Sbjct: 16 LYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFK 71
Query: 104 ----SMNGVHLKLDILDTSG 119
++G +KL I DT+G
Sbjct: 72 IRTIELDGKTIKLQIWDTAG 91
Score = 36.5 bits (85), Expect = 0.012
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
G F+E SAK+ TN+ Q F + + K +
Sbjct: 167 SLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 63.8 bits (156), Expect = 8e-12
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 48/162 (29%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A FIL+Y I + SF ++ I+ + + +++VGNK D+ DE R V
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTY-----SWDNAQVLLVGNKCDMEDE-RVV--- 131
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
++E Q+ G F EASAKDN N+ Q
Sbjct: 132 ------------------------------SSERGRQLADHLGFEFFEASAKDNINVKQT 161
Query: 303 FKELLVQAKVKYNLSPALRRRRRQSL---PPVQHSPNPVPYD 341
F+ L+ K + S P + P D
Sbjct: 162 FERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQD 203
Score = 46.5 bits (111), Expect = 5e-06
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
S D K++++G VGK+S + R+ ++F+P + T+ DF + N +
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRI 57
Query: 111 KLDILDTSG 119
KL I DT+G
Sbjct: 58 KLQIWDTAG 66
Score = 36.1 bits (84), Expect = 0.015
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
G F EASAKDN N+ Q F+ L+ K
Sbjct: 142 HLGFEFFEASAKDNINVKQTFERLVDVICEK 172
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 63.5 bits (155), Expect = 1e-11
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 45/132 (34%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
+ I+VY + D SF +++ I + A++ V ++VGNK DL D+ R V
Sbjct: 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRY-----ATSTVLKLLVGNKCDLKDK-RVV-- 131
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
+ + N F+E SA D+TN+
Sbjct: 132 -------------------------------EYDVAKEFADANKMPFLETSALDSTNVED 160
Query: 302 VFKELLVQAKVK 313
F + Q K
Sbjct: 161 AFLTMARQIKES 172
Score = 49.2 bits (118), Expect = 6e-07
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS-----MNGVHL 110
+ +D K++++G VGKS ++ RF +T++ Y TI DF ++G +
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI----GVDFKIKTVELDGKTV 57
Query: 111 KLDILDTSG 119
KL I DT+G
Sbjct: 58 KLQIWDTAG 66
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSK 409
N F+E SA D+TN+ F + Q K + +++ + SL +
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNT 201
Query: 410 G 410
G
Sbjct: 202 G 202
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 63.0 bits (154), Expect = 1e-11
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 45/131 (34%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A FIL+Y I + SF ++ I+ + + +++VGNK D+ +E R V
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTY-----SWDNAQVILVGNKCDMEEE-RVV--- 146
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
TE + + G F EASAK+N ++ Q
Sbjct: 147 ------------------------------PTEKGQLLAEQLGFDFFEASAKENISVRQA 176
Query: 303 FKELLVQAKVK 313
F+ L+ K
Sbjct: 177 FERLVDAICDK 187
Score = 50.3 bits (121), Expect = 3e-07
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
+S D K++++G VGK+S + R+ +TF+P + T+ DF +
Sbjct: 7 HSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----GIDFKV 62
Query: 106 -----NGVHLKLDILDTSG 119
+ +KL I DT+G
Sbjct: 63 KTVYRHEKRVKLQIWDTAG 81
Score = 36.1 bits (84), Expect = 0.014
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVK 380
F EASAK+N ++ Q F+ L+ K
Sbjct: 162 FFEASAKENISVRQAFERLVDAICDK 187
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 62.2 bits (152), Expect = 2e-11
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
+ ++VY I + NSF + +R + V I++VGNK+DL+D+ RQV
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTE-----RGSDVIIMLVGNKTDLSDK-RQV--- 137
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+TE + E F+E SAK N+ Q+
Sbjct: 138 ------------------------------STEEGERKAKELNVMFIETSAKAGYNVKQL 167
Query: 303 FKELL 307
F+ +
Sbjct: 168 FRRVA 172
Score = 56.8 bits (138), Expect = 1e-09
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
SG + K+V +G VGK+S+I RF+Y++F Y+ TI DF +
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI----GIDFLSKTMYLED 60
Query: 108 VHLKLDILDTSG 119
++L + DT+G
Sbjct: 61 RTVRLQLWDTAG 72
Score = 34.9 bits (81), Expect = 0.030
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
E F+E SAK N+ Q+F+ +
Sbjct: 148 ELNVMFIETSAKAGYNVKQLFRRVA 172
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 62.6 bits (153), Expect = 2e-11
Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 45/136 (33%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A I+VY + D SF ++ I + AS V ++VGNK DL + + V
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-----ASENVNKLLVGNKCDLTTK-KVV--- 139
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+ + G F+E SAK+ TN+ Q
Sbjct: 140 ------------------------------DYTTAKEFADSLGIPFLETSAKNATNVEQS 169
Query: 303 FKELLVQAKVKYNLSP 318
F + + K +
Sbjct: 170 FMTMAAEIKKRMGPGA 185
Score = 51.1 bits (123), Expect = 1e-07
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
S + +D K++++G VGKS ++ RF +T++ Y TI DF ++G
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDG 62
Query: 108 VHLKLDILDTSG 119
+KL I DT+G
Sbjct: 63 KTIKLQIWDTAG 74
Score = 36.1 bits (84), Expect = 0.018
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSP 385
G F+E SAK+ TN+ Q F + + K +
Sbjct: 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 61.7 bits (151), Expect = 2e-11
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
++ ILVY I D +SF++++ +R + + +VGNK DL E R
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKM-----LGNEICLCIVGNKIDLEKE-R----- 127
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
V ES + G SAK N I ++
Sbjct: 128 -------------------------HVSIQEAESYAE---SVGAKHYHTSAKQNKGIEEL 159
Query: 303 FKELL 307
F +L
Sbjct: 160 FLDLC 164
Score = 51.0 bits (123), Expect = 1e-07
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
KVV++G VGK+S++ R+ N F+ K+ T+ F ++ G + L I DT+
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG----ASFLTKKLNIGGKRVNLAIWDTA 63
Query: 119 G 119
G
Sbjct: 64 G 64
Score = 35.6 bits (83), Expect = 0.019
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
G SAK N I ++F +L
Sbjct: 140 SVGAKHYHTSAKQNKGIEELFLDLC 164
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 62.4 bits (152), Expect = 3e-11
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 46/138 (33%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A ILVY + D +F I+ + +H A+ +++VGNKSD+ E R V
Sbjct: 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEH-----ANDEAQLLLVGNKSDM--ETRVV-- 142
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T + + E G F+E+SAK++ N+ +
Sbjct: 143 -------------------------------TADQGEALAKELGIPFIESSAKNDDNVNE 171
Query: 302 VFKELLVQAKVKYNLSPA 319
+F L + K + +
Sbjct: 172 IFFTLAKLIQEKIDSNKL 189
Score = 50.8 bits (122), Expect = 2e-07
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
SG+ + +D+ K++++G VGKS ++ RF+ + F+P + TI DF + NG
Sbjct: 11 SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDING 66
Query: 108 VHLKLDILDTSG 119
+KL + DT+G
Sbjct: 67 KKVKLQLWDTAG 78
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSK 409
E G F+E+SAK++ N+ ++F L + K + S L + + SK
Sbjct: 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-SNKLVGVGNGKEGNISINSGSGNSSK 211
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 61.9 bits (151), Expect = 3e-11
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 46/139 (33%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A F+L++ + + SF +R ++ H S IV+ GNKSDL D+ R V
Sbjct: 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHA----YSENPDIVLCGNKSDLEDQ-RAV--- 145
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
E ++ + G + E SA + TNI+
Sbjct: 146 ------------------------------KEEEARELAEKYGIPYFETSAANGTNISHA 175
Query: 303 FKELL--VQAKVKYNLSPA 319
+ LL + +++ ++ +
Sbjct: 176 IEMLLDLIMKRMERSVDKS 194
Score = 49.5 bits (119), Expect = 4e-07
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-----------EEMHHE 101
S S +D K + +G VGK+S+++++ F+ K+ T+ +
Sbjct: 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 102 DFSMNGVHLKLDILDTSG 119
G + L + DT+G
Sbjct: 62 GAVGRGQRIHLQLWDTAG 79
Score = 36.4 bits (85), Expect = 0.011
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL--VQAKVKYNLSPA 386
+ G + E SA + TNI+ + LL + +++ ++ +
Sbjct: 156 KYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 61.4 bits (150), Expect = 3e-11
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 48/128 (37%)
Query: 189 ADAFILVYAIDDPNSFE-------EIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
A +LVY I + SFE ++ + + + T + +VGNK DL R +
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEE-----SETQPLVALVGNKIDLEHM-RTI 133
Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNI 299
E ++ ENG SAK ++
Sbjct: 134 ---------------------------------KPEKHLRFCQENGFSSHFVSAKTGDSV 160
Query: 300 TQVFKELL 307
F+++
Sbjct: 161 FLCFQKVA 168
Score = 50.6 bits (122), Expect = 1e-07
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL------KL 112
H + K+VV+G GK+S+ F TF +YK+TI DF + + L L
Sbjct: 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI----GLDFFLRRITLPGNLNVTL 58
Query: 113 DILDTSG 119
I D G
Sbjct: 59 QIWDIGG 65
Score = 35.2 bits (82), Expect = 0.026
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
ENG SAK ++ F+++
Sbjct: 144 ENGFSSHFVSAKTGDSVFLCFQKVA 168
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 61.5 bits (150), Expect = 4e-11
Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I +F + R H +S+ + I+++GNKSDL R V
Sbjct: 93 GAAGALLVYDITRRETFNHLTSWLEDARQH-----SSSNMVIMLIGNKSDLESR-RDV-- 144
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
E E+G F+E SAK N+ +
Sbjct: 145 -------------------------------KREEGEAFAREHGLIFMETSAKTACNVEE 173
Query: 302 VFKELL 307
F
Sbjct: 174 AFINTA 179
Score = 48.7 bits (117), Expect = 9e-07
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS-----MNG 107
SG K +++G VGKS ++ +F F P + TI +F ++G
Sbjct: 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----GVEFGARMVNIDG 67
Query: 108 VHLKLDILDTSG 119
+KL I DT+G
Sbjct: 68 KQIKLQIWDTAG 79
Score = 35.3 bits (82), Expect = 0.027
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
E+G F+E SAK N+ + F
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINTA 179
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 61.6 bits (150), Expect = 5e-11
Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 48/157 (30%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
+ ++VY I + NSF++ +R + V I++VGNK+DLAD+ R
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTE-----RGSDVIIMLVGNKTDLADK-R----- 137
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
QV + E + E F+E SAK N+ Q+
Sbjct: 138 -------------------------QVSIEEGERKAK---ELNVMFIETSAKAGYNVKQL 169
Query: 303 FKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVP 339
F+ + A + R R + P P
Sbjct: 170 FRRV---AAALPGMESTQDRSREDMIDIKLEKPQEQP 203
Score = 55.8 bits (135), Expect = 4e-09
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
G + K+V +G VGK+S+I RF+Y++F Y+ TI DF +
Sbjct: 7 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG----IDFLSKTMYLED 62
Query: 108 VHLKLDILDTSG 119
++L + DT+G
Sbjct: 63 RTVRLQLWDTAG 74
Score = 37.3 bits (87), Expect = 0.007
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSK 409
E F+E SAK N+ Q+F+ + A + R R + P S+
Sbjct: 150 ELNVMFIETSAKAGYNVKQLFRRV---AAALPGMESTQDRSREDMIDIKLEKPQEQPVSE 206
Query: 410 G 410
G
Sbjct: 207 G 207
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 61.1 bits (149), Expect = 5e-11
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
SA+A IL Y I SF + I + AS V V+VGNK DLA+ R+V
Sbjct: 98 SANALILTYDITCEESFRCLPEWLREIEQY-----ASNKVITVLVGNKIDLAER-REV-- 149
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
+ + + ++E SAK++ N+ +
Sbjct: 150 -------------------------------SQQRAEEFSEAQDMYYLETSAKESDNVEK 178
Query: 302 VFKELLVQAKVK 313
+F +L + +
Sbjct: 179 LFLDLACRLISE 190
Score = 52.7 bits (127), Expect = 5e-08
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
+S GS E +D K+V++G VGK+ ++ RF F P TI DF +
Sbjct: 10 HSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI----GVDFMI 65
Query: 106 -----NGVHLKLDILDTSG 119
NG +KL I DT+G
Sbjct: 66 KTVEINGEKVKLQIWDTAG 84
Score = 35.3 bits (82), Expect = 0.030
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
++E SAK++ N+ ++F +L + +
Sbjct: 160 AQDMYYLETSAKESDNVEKLFLDLACRLISE 190
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 61.1 bits (149), Expect = 6e-11
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 46/133 (34%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
SA+ IL Y I +SF + +R + A + + +++GNKSDL++ R+V
Sbjct: 101 SANGAILAYDITKRSSFLSVPHWIEDVRKY-----AGSNIVQLLIGNKSDLSEL-REV-- 152
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNIT 300
+ + +E SAKD++N+
Sbjct: 153 -------------------------------SLAEAQSLAEHYDILCAIETSAKDSSNVE 181
Query: 301 QVFKELLVQAKVK 313
+ F + + ++
Sbjct: 182 EAFLRVATELIMR 194
Score = 51.5 bits (124), Expect = 1e-07
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
E +D K+V++G VGK+ ++ RF FS + TI DF+M
Sbjct: 13 GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI----GVDFTM 68
Query: 106 -----NGVHLKLDILDTSG 119
G +KL I DT+G
Sbjct: 69 KTLEIQGKRVKLQIWDTAG 87
Score = 35.3 bits (82), Expect = 0.025
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVK 380
+E SAKD++N+ + F + + ++
Sbjct: 169 AIETSAKDSSNVEEAFLRVATELIMR 194
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 60.3 bits (147), Expect = 8e-11
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I ++ + R AS + I++ GNK DL + R+V
Sbjct: 82 GAAGALLVYDITSRETYNALTNWLTDARML-----ASQNIVIILCGNKKDLDAD-REV-- 133
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T + EN F+E SA N+ +
Sbjct: 134 -------------------------------TFLEASRFAQENELMFLETSALTGENVEE 162
Query: 302 VFKELL 307
F +
Sbjct: 163 AFVQCA 168
Score = 47.2 bits (113), Expect = 3e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
SE +D K +V+G GKS ++H+F+ F TI +F G ++
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI----GVEFGSKIINVGGKYV 59
Query: 111 KLDILDTSG 119
KL I DT+G
Sbjct: 60 KLQIWDTAG 68
Score = 35.2 bits (82), Expect = 0.031
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
EN F+E SA N+ + F +
Sbjct: 144 ENELMFLETSALTGENVEEAFVQCA 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 61.2 bits (149), Expect = 8e-11
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 44/125 (35%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A F+L++ + SF +R ++ + IV++GNK+DL D+ R+V
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANA----YCENPDIVLIGNKADLPDQ-REV--- 159
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
++ + G + E SA N+ +
Sbjct: 160 ------------------------------NERQARELADKYGIPYFETSAATGQNVEKA 189
Query: 303 FKELL 307
+ LL
Sbjct: 190 VETLL 194
Score = 48.9 bits (117), Expect = 1e-06
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI---------- 95
SS S +D K++ +G VGK++ ++R+ N F+PK+ T+
Sbjct: 9 HHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV 68
Query: 96 -EEMHHEDFSMNGVHLKLDILDTSG 119
S + L + DT+G
Sbjct: 69 YNAQGPNGSSGKAFKVHLQLWDTAG 93
Score = 35.8 bits (83), Expect = 0.023
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
+ G + E SA N+ + + LL
Sbjct: 170 KYGIPYFETSAATGQNVEKAVETLL 194
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 60.8 bits (148), Expect = 9e-11
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 43/165 (26%)
Query: 189 ADAFILVYAIDDPNSFEEIRL-IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
A IL + + + + + +++ F+ PIVV NK D+ + +++
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKE--FQAVVGNEAPIVVCANKIDIKNR-QKI------ 135
Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKE 305
+ + V++V + E SAK N F
Sbjct: 136 ---------------------------SKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168
Query: 306 LLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVD 350
L + P L +L P + + + + ++ + ++
Sbjct: 169 LARIFTGR----PDLIFVSNVNLEPTEVNYDYHSPEESKYIDYME 209
Score = 55.8 bits (135), Expect = 5e-09
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
GS E + +K+ ++G VGK++ I+R L F Y T+ + + G
Sbjct: 2 PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA---VNHPVTFLDDQG 58
Query: 108 VHLKLDILDTSG 119
+K ++ DT+G
Sbjct: 59 NVIKFNVWDTAG 70
Score = 35.4 bits (82), Expect = 0.028
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 338 VPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKELLVQAKVKYNL----SPALRRRR 391
+ V++ + E SAK N F L + +L + L
Sbjct: 135 ISKKLVMEVLK---GKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEP-- 189
Query: 392 RQSLPPVQHSPNPSLKSK 409
V + + +SK
Sbjct: 190 ----TEVNYDYHSPEESK 203
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 59.8 bits (146), Expect = 1e-10
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
+ A I+VY I +F ++ +R H ++ + + GNK DL D R
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKCDLTDV-R----- 127
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+V + FVE SAK+ NI ++
Sbjct: 128 -------------------------EVMERDAKDYAD---SIHAIFVETSAKNAININEL 159
Query: 303 FKELL 307
F E+
Sbjct: 160 FIEIS 164
Score = 51.7 bits (125), Expect = 6e-08
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
KV ++G VGKSSI+ RF+ ++F P TI F K I DT+
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG----ASFMTKTVQYQNELHKFLIWDTA 63
Query: 119 G 119
G
Sbjct: 64 G 64
Score = 35.6 bits (83), Expect = 0.021
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
FVE SAK+ NI ++F E+
Sbjct: 140 SIHAIFVETSAKNAININELFIEIS 164
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 59.9 bits (146), Expect = 1e-10
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 46/132 (34%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
I+VY + SF ++ I + V ++VGNK+D + + V
Sbjct: 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQN------CDDVCRILVGNKNDDPER-KVV-- 131
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
TE + + G E SAK+N N+ +
Sbjct: 132 -------------------------------ETEDAYKFAGQMGIQLFETSAKENVNVEE 160
Query: 302 VFKELLVQAKVK 313
+F +
Sbjct: 161 MFNCITELVLRA 172
Score = 48.7 bits (117), Expect = 6e-07
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
+ +D K++++G VGKSS++ RF NTFS Y TI DF + NG +
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGEKV 58
Query: 111 KLDILDTSG 119
KL I DT+G
Sbjct: 59 KLQIWDTAG 67
Score = 36.0 bits (84), Expect = 0.013
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVK 380
+ G E SAK+N N+ ++F +
Sbjct: 142 QMGIQLFETSAKENVNVEEMFNCITELVLRA 172
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 60.3 bits (147), Expect = 1e-10
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
+ A ++VY I +SF ++ +++H + + + GNK DL+D R
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEH-----GPENIVMAIAGNKCDLSDI-R----- 144
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+VP + + G VE SAK+ NI ++
Sbjct: 145 -------------------------EVPLKDAKEYAE---SIGAIVVETSAKNAINIEEL 176
Query: 303 FKELL 307
F+ +
Sbjct: 177 FQGIS 181
Score = 53.8 bits (130), Expect = 2e-08
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 45 VSASSENESGSS-----EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH 99
+ +S + SS KV ++G VGKSSI+ RF+ + F TI
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--- 57
Query: 100 HEDF-----SMNGVHLKLDILDTSG 119
F K I DT+G
Sbjct: 58 -ASFMTKTVPCGNELHKFLIWDTAG 81
Score = 34.9 bits (81), Expect = 0.034
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
G VE SAK+ NI ++F+ +
Sbjct: 157 SIGAIVVETSAKNAINIEELFQGIS 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 1e-10
Identities = 72/472 (15%), Positives = 136/472 (28%), Gaps = 136/472 (28%)
Query: 1 MSALKSGEIRKLRPSLHSQFFVSAENA---GSQFLQPSLNFNR---ILNLVSASSENESG 54
MS +K+ + +PS+ ++ ++ + +Q N +R L L A E
Sbjct: 95 MSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPA 150
Query: 55 SSEGHDTRHKVVVMGGPKVGKSS----------IIHRFLYNTF--SPKYKRTIE---EMH 99
V++ G GK+ + + + F + K + E EM
Sbjct: 151 K--------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM- 201
Query: 100 HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKT- 158
+ + ++D TS +K + LRR L +P Y+
Sbjct: 202 -----LQKLLYQIDPNWTSRSDHSSNIKL------RIHSIQAE--LRRLLKSKP--YENC 246
Query: 159 -----DVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
+VQ + ++C + L +++ + D ++ + DH
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--------KIL-LTTRFKQV----TDFLSAATTTHISLDH 293
Query: 214 I---FETKASTAVPIVVVGNK-SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD 269
++ + + + DL E LT P + S+ A I
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRL-------SIIAESIRDGLA 342
Query: 270 QVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
W+N + + T I + L PA R+ L
Sbjct: 343 T-------------WDN-WKHVNCDKLTTIIESSLN---------VLEPAEYRKMFDRL- 378
Query: 330 PVQHSPNPV-PYDT--TESVVQVDWE-----------NGFVEAS--AKDNTNITQVFKEL 373
V P ++ + W N + S K T +
Sbjct: 379 -------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 374 LVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYI 425
++ KVK AL R + + L ++Y +I
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YFYSHI 477
Score = 47.9 bits (113), Expect = 8e-06
Identities = 55/405 (13%), Positives = 113/405 (27%), Gaps = 111/405 (27%)
Query: 79 IHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138
+ + S K I+ + +++G L + E+ + VL K+
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF 93
Query: 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI 198
+ ++ Q M + ++ +L + N+ V+A
Sbjct: 94 LMSP--IKTEQRQPSMMTRMYIEQRDRL------YNDNQ-----------------VFAK 128
Query: 199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVG----NKSDLA-----DENRQVDLTGGPFQ 249
+ + + +R + E + + V ++ G K+ +A Q + F
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185
Query: 250 TYLS----GLPDSVCA------HQISGTPDQVPYDTTESVVQVDWENG-----FVEASAK 294
+L+ P++V +QI ++ +++ +
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 295 ------DNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQ 348
N + + + K+ L R + + + + TT +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-------LLTTRFKQV------TDFLSAATTTHISL 291
Query: 349 VDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNP---- 404
K LL K + P Q LP + NP
Sbjct: 292 DHHSMTLTPDEV----------KSLL--LKY-LDCRP-------QDLPREVLTTNPRRLS 331
Query: 405 ----SLKSKG--WVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEI 443
S++ W N W+H IE VL P E
Sbjct: 332 IIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLE-PAEY 371
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 59.5 bits (145), Expect = 1e-10
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A A I+VY I + SF + ++ AS + I + GNK+DLA++ R
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQ-----ASPNIVIALSGNKADLANK-R----- 127
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
V + +S +N F+E SAK + N+ ++
Sbjct: 128 -------------------------AVDFQEAQSYAD---DNSLLFMETSAKTSMNVNEI 159
Query: 303 FKELL 307
F +
Sbjct: 160 FMAIA 164
Score = 51.8 bits (125), Expect = 5e-08
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
K+V++G VGKSS++ RF+ F + TI F ++ +K +I DT+
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG----AAFLTQTVCLDDTTVKFEIWDTA 63
Query: 119 G 119
G
Sbjct: 64 G 64
Score = 34.8 bits (81), Expect = 0.032
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
+N F+E SAK + N+ ++F +
Sbjct: 140 DNSLLFMETSAKTSMNVNEIFMAIA 164
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 59.9 bits (146), Expect = 1e-10
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LV+ + ++ + + DH A + +++VGNKSDL+ R+V
Sbjct: 97 GAVGALLVFDLTKHQTYAVVERWLKELYDH-----AEATIVVMLVGNKSDLSQA-REV-- 148
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
TE NG F+E SA D+TN+
Sbjct: 149 -------------------------------PTEEARMFAENNGLLFLETSALDSTNVEL 177
Query: 302 VFKELL 307
F+ +L
Sbjct: 178 AFETVL 183
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
SS SE ++ KVV++G VGK++++ RF N FS + TI +FS
Sbjct: 9 HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI----GVEFST 64
Query: 106 -----NGVHLKLDILDTSG 119
+K I DT+G
Sbjct: 65 RTVMLGTAAVKAQIWDTAG 83
Score = 35.3 bits (82), Expect = 0.031
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
NG F+E SA D+TN+ F+ +L
Sbjct: 159 NNGLLFLETSALDSTNVELAFETVL 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 59.9 bits (146), Expect = 1e-10
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 45/128 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I ++E + +RDH A + + I++VGNKSDL R V
Sbjct: 101 GAVGALLVYDIAKHLTYENVERWLKELRDH-----ADSNIVIMLVGNKSDLRHL-RAV-- 152
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T+ +NG F+E SA D+TN+
Sbjct: 153 -------------------------------PTDEARAFAEKNGLSFIETSALDSTNVEA 181
Query: 302 VFKELLVQ 309
F+ +L +
Sbjct: 182 AFQTILTE 189
Score = 51.4 bits (124), Expect = 9e-08
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 37 NFNRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE 96
+ + + + + +D KVV++G VGKS+++ RF N F+ + K TI
Sbjct: 4 SHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI- 62
Query: 97 EMHHEDFSM-----NGVHLKLDILDTSG 119
+F+ +G +K I DT+G
Sbjct: 63 ---GVEFATRSIQVDGKTIKAQIWDTAG 87
Score = 34.9 bits (81), Expect = 0.040
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQ 376
+NG F+E SA D+TN+ F+ +L +
Sbjct: 163 KNGLSFIETSALDSTNVEAAFQTILTE 189
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 59.5 bits (145), Expect = 2e-10
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 45/125 (36%)
Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A A I+V+ + + SFE + ++ + + + + GNKSDL D R
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKSDLLDA-R----- 133
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
+V + ++ Q ENG F+E SAK TN+ ++
Sbjct: 134 -------------------------KVTAEDAQTYAQ---ENGLFFMETSAKTATNVKEI 165
Query: 303 FKELL 307
F E+
Sbjct: 166 FYEIA 170
Score = 54.8 bits (133), Expect = 7e-09
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 54 GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGV 108
++ K+V++G GKSS++ RF+ + F + TI F ++N
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG----AAFFSQTLAVNDA 59
Query: 109 HLKLDILDTSG 119
+K +I DT+G
Sbjct: 60 TVKFEIWDTAG 70
Score = 34.8 bits (81), Expect = 0.036
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
ENG F+E SAK TN+ ++F E+
Sbjct: 146 ENGLFFMETSAKTATNVKEIFYEIA 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 59.6 bits (145), Expect = 2e-10
Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 45/158 (28%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I ++E + +RDH A + + I++VGNKSDL R V
Sbjct: 77 GAVGALLVYDIAKHLTYENVERWLKELRDH-----ADSNIVIMLVGNKSDLRHL-RAV-- 128
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T+ +N F+E SA D+TN+ +
Sbjct: 129 -------------------------------PTDEARAFAEKNNLSFIETSALDSTNVEE 157
Query: 302 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVP 339
FK +L + + R P VP
Sbjct: 158 AFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVP 195
Score = 46.5 bits (111), Expect = 5e-06
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKLDILDTS 118
KVV++G VGKS+++ RF N F+ + K TI +F+ +G +K I DT+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI----GVEFATRSIQVDGKTIKAQIWDTA 62
Query: 119 G 119
G
Sbjct: 63 G 63
Score = 35.7 bits (83), Expect = 0.019
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKS 408
+N F+E SA D+TN+ + FK +L + + + R P + + S+
Sbjct: 139 KNNLSFIETSALDSTNVEEAFKNILTEIYRIVS-QKQIADRAAHDESPGNNVVDISVPP 196
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 59.5 bits (145), Expect = 2e-10
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A ++VY I +++ + R+ + I+++GNK+DL + R V
Sbjct: 87 GAAGALMVYDITRRSTYNHLSSWLTDARNL-----TNPNTVIILIGNKADLEAQ-RDV-- 138
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T E Q ENG F+EASAK N+
Sbjct: 139 -------------------------------TYEEAKQFAEENGLLFLEASAKTGENVED 167
Query: 302 VFKELL 307
F E
Sbjct: 168 AFLEAA 173
Score = 48.3 bits (116), Expect = 9e-07
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
+ + + K +++G VGKS ++H+F F TI +F +G
Sbjct: 6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI----GVEFGTRIIEVSG 61
Query: 108 VHLKLDILDTSG 119
+KL I DT+G
Sbjct: 62 QKIKLQIWDTAG 73
Score = 34.9 bits (81), Expect = 0.031
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
ENG F+EASAK N+ F E
Sbjct: 149 ENGLLFLEASAKTGENVEDAFLEAA 173
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 60.0 bits (146), Expect = 2e-10
Identities = 21/137 (15%), Positives = 33/137 (24%), Gaps = 48/137 (35%)
Query: 189 ADAFILVYAIDDPNSF-------EEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
ILV+ + SF E ++ R + V+V NK+DL + QV
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPD-----RERPLRAVLVANKTDLPPQRHQV 151
Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK-DNTN 298
+ N F + SA +
Sbjct: 152 ---------------------------------RLDMAQDWATTNTLDFFDVSANPPGKD 178
Query: 299 ITQVFKELLVQAKVKYN 315
F + Y
Sbjct: 179 ADAPFLSIATTFYRNYE 195
Score = 46.1 bits (110), Expect = 7e-06
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRF--LYNTFSPKYKRTI 95
S + R KV V+G VGKS++I F + F Y T
Sbjct: 4 SMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 59.2 bits (144), Expect = 3e-10
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 45/138 (32%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A ILVY + ++F ++ + + + ++VGNK D ENR+V
Sbjct: 87 GAQGVILVYDVTRRDTFVKLDNWLNELETY----CTRNDIVNMLVGNKIDK--ENREV-- 138
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
++ ++ F+EASAK +
Sbjct: 139 -------------------------------DRNEGLKFARKHSMLFIEASAKTCDGVQC 167
Query: 302 VFKELLVQAKVKYNLSPA 319
F+EL+ + L +
Sbjct: 168 AFEELVEKIIQTPGLWES 185
Score = 51.5 bits (124), Expect = 1e-07
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 49 SENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM--- 105
S SG E T K++++G VGKSS++ RF +TF P+ TI DF +
Sbjct: 2 SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI----GVDFKVKTI 57
Query: 106 --NGVHLKLDILDTSG 119
+G KL I DT+G
Sbjct: 58 SVDGNKAKLAIWDTAG 73
Score = 36.1 bits (84), Expect = 0.016
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 352 ENG--FVEASAKDNTNITQVFKELLVQAKVKYNLSPA 386
++ F+EASAK + F+EL+ + L +
Sbjct: 149 KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES 185
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 58.8 bits (143), Expect = 3e-10
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A +LVY I ++ + R AS + +++ GNK DL E R+V
Sbjct: 97 GAAGALLVYDITSRETYNSLAAWLTDARTL-----ASPNIVVILCGNKKDLDPE-REV-- 148
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
T + EN F+E SA N+ +
Sbjct: 149 -------------------------------TFLEASRFAQENELMFLETSALTGENVEE 177
Query: 302 VFKELL 307
F +
Sbjct: 178 AFLKCA 183
Score = 49.6 bits (119), Expect = 4e-07
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 48 SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-- 105
SS S D K +V+G GKS ++H+F+ N F TI +F
Sbjct: 11 SSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI----GVEFGSRV 66
Query: 106 ---NGVHLKLDILDTSG 119
G +KL I DT+G
Sbjct: 67 VNVGGKTVKLQIWDTAG 83
Score = 34.9 bits (81), Expect = 0.042
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
EN F+E SA N+ + F +
Sbjct: 159 ENELMFLETSALTGENVEEAFLKCA 183
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 60.4 bits (146), Expect = 4e-10
Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 45/240 (18%)
Query: 81 RFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140
Y E + + + +D + ++ K + G G
Sbjct: 114 DVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCL-- 171
Query: 141 DKVCLRRALNQRPMA--------YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSAD 190
+ N P Y +V + K +L + T ++ +R LS D
Sbjct: 172 ---LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 228
Query: 191 AFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
F++ +++ P SF +R +R H PI++VG K DL D+ ++
Sbjct: 229 VFLICFSLVSPASFHHVRAKWYPEVRHH------CPNTPIILVGTKLDLRDDKDTIEKLK 282
Query: 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
T ++ A +I ++E SA + VF E
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAV-------------------KYLECSALTQRGLKTVFDE 323
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 58.9 bits (143), Expect = 5e-10
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLK 111
S + + K+V++G GK++ + R L F KY T+ E+H F N +K
Sbjct: 6 SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65
Query: 112 LDILDTSG 119
++ DT+G
Sbjct: 66 FNVWDTAG 73
Score = 53.9 bits (130), Expect = 3e-08
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 54/158 (34%)
Query: 189 ADAFILVYAIDDPNSFEEI----RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
A I+++ + +++ + R + +PIV+ GNK D+ D +
Sbjct: 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV------CENIPIVLCGNKVDIKDR-KVKA-- 138
Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF- 303
S+ H+ + + SAK N N + F
Sbjct: 139 ------------KSIVFHRKKNLQ-------------------YYDISAKSNYNFEKPFL 167
Query: 304 ---KELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPV 338
++L+ +++ PAL P V P
Sbjct: 168 WLARKLIGDPNLEFVAMPALAP------PEVVMDPALA 199
Score = 34.2 bits (79), Expect = 0.068
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSK 409
+ + SAK N N + F L + P L +L P + +P+L ++
Sbjct: 151 YYDISAKSNYNFEKPFLWLARKLIGD----PNLEFVAMPALAPPEVVMDPALAAQ 201
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 55.3 bits (134), Expect = 4e-09
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 47/129 (36%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
+ A + VY + + SF + + H+ + +P ++VGNK DL QV
Sbjct: 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHL----LANDIPRILVGNKCDLRSA-IQV-- 145
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK---DNTN 298
T+ + + E SAK DN +
Sbjct: 146 -------------------------------PTDLAQKFADTHSMPLFETSAKNPNDNDH 174
Query: 299 ITQVFKELL 307
+ +F L
Sbjct: 175 VEAIFMTLA 183
Score = 46.8 bits (112), Expect = 4e-06
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVH 109
K++V+G VGK+ + +RF F + + TI DF +G
Sbjct: 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI----GVDFRERAVDIDGER 68
Query: 110 LKLDILDTSG 119
+K+ + DT+G
Sbjct: 69 IKIQLWDTAG 78
Score = 29.9 bits (68), Expect = 1.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 352 ENG--FVEASAK---DNTNITQVFKELL 374
+ E SAK DN ++ +F L
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLA 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 78/509 (15%), Positives = 142/509 (27%), Gaps = 221/509 (43%)
Query: 14 PSLHSQF--FVSAE---NAGSQF---LQPSLN-FNR-IL-----NLVSASSENESGSSEG 58
L +F +VS+ + QF L L F L + ++A E+ ++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 59 HDTRHKVV--------VMGGP-------------KVGKSSIIHRF--------------- 82
+++ + P G + ++ F
Sbjct: 118 --KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 83 LYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS---GKGLKCGAVLWGPKKWG 139
LY T+ I+ L +++ T+ + +GL +W
Sbjct: 176 LYQTYHVLVGDLIKFS--------AETLS-ELIRTTLDAEKVFTQGLN-------ILEW- 218
Query: 140 LDKVCLRRALNQRP----MAYKTDVQLP-SKLTSLA---MTCST------NEFPAMRALS 185
L + P + + P + LA +T ++ +
Sbjct: 219 -----LENP-SNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 186 ISSADAFILVYAI-----DDPNSFEE-----IRL-----IRDHIFETKASTAVPIVVVGN 230
S LV A+ D SF I + +R + E +T++P ++
Sbjct: 272 GHSQG---LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPPSIL-- 324
Query: 231 KSDLADENRQVDLTGGPFQTY-LS--GLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287
D + EN + G P + LS L ++ T +P V++ NG
Sbjct: 325 -ED-SLENNE----GVP--SPMLSISNLTQEQVQDYVNKTNSHLP---AGKQVEISLVNG 373
Query: 288 ---FV----------------EASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQS- 327
V +A A + Q+++ ++ R+ + S
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLD----------QSRIPFS-----ERKLKFSN 418
Query: 328 --LP---PVQHSP--------------------------NPVPYDT-------------T 343
LP P HS PV YDT +
Sbjct: 419 RFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-YDTFDGSDLRVLSGSIS 476
Query: 344 ESVVQ------VDWENGFVEASAKDNTNI 366
E +V V WE + T+I
Sbjct: 477 ERIVDCIIRLPVKWE----TTTQFKATHI 501
Score = 38.1 bits (88), Expect = 0.008
Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 42/155 (27%)
Query: 9 IRKLRPSL--HSQFFVSAENAGSQFL---QP-SL-NFNRILNLVSASSENESGSSEGHDT 61
+ K L Q +S N + P SL N L A S + S
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSE 411
Query: 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSP---KY-----KRTIEEMHHEDFSMNGVHLKLD 113
R K +RFL SP +++ + S N +++
Sbjct: 412 R------------KLKFSNRFL-PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 114 ILDTSGEQSGKGLK----------CGAVLWGPKKW 138
+ DT G L+ ++ P KW
Sbjct: 459 VYDTF---DGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 36.6 bits (84), Expect = 0.031
Identities = 51/304 (16%), Positives = 87/304 (28%), Gaps = 117/304 (38%)
Query: 68 MGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM--HHED---FSMNGVHLKLDILDTS---- 118
MG LY T S + H +D FS+ LDI+ +
Sbjct: 1631 MG-----------MDLYKT-SKAAQDVWNRADNHFKDTYGFSI------LDIVINNPVNL 1672
Query: 119 ----GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTS------ 168
G + GK ++ + ++ + K ++ TS
Sbjct: 1673 TIHFGGEKGKRIR----------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 169 ---LAMTCSTNEF--PAMRALSISSADAFILVYAIDDPNSFEEIR----LIRDHIF---- 215
L+ T +F PA+ + A FE+++ + D F
Sbjct: 1723 KGLLSAT----QFTQPALTLME----------KAA-----FEDLKSKGLIPADATFAGHS 1763
Query: 216 --E-----TKA-----STAVPIVVV-GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH 262
E + A + V +V G +A D G ++ P V A
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGRVAA- 1819
Query: 263 QISGTPDQVPYDTTESVV-QVDWENG-FVEASAKDNTNITQV-----------FKELLVQ 309
S + + + + VV +V G VE N Q +L
Sbjct: 1820 --SFSQEAL-----QYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 310 AKVK 313
K++
Sbjct: 1872 IKLQ 1875
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 55.1 bits (133), Expect = 1e-08
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 45/126 (35%)
Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
A ++VY I +S+E +R++ A V + ++GNKSDLA R V
Sbjct: 85 GAVGALIVYDISKSSSYENCNHWLSELREN-----ADDNVAVGLIGNKSDLAHL-RAV-- 136
Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
TE EN F E SA ++ N+ +
Sbjct: 137 -------------------------------PTEESKTFAQENQLLFTETSALNSENVDK 165
Query: 302 VFKELL 307
F+EL+
Sbjct: 166 AFEELI 171
Score = 47.8 bits (114), Expect = 2e-06
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 53 SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
+D K+V++G VGKS+++ RF N F+ K TI +F+ G
Sbjct: 4 EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI----GVEFATRTLEIEG 59
Query: 108 VHLKLDILDTSG 119
+K I DT+G
Sbjct: 60 KRIKAQIWDTAG 71
Score = 30.8 bits (70), Expect = 0.95
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 352 ENG--FVEASAKDNTNITQVFKELL 374
EN F E SA ++ N+ + F+EL+
Sbjct: 147 ENQLLFTETSALNSENVDKAFEELI 171
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 52.5 bits (126), Expect = 3e-08
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDIL 115
T K+V++G VGKSSI+ RF+ N F+ + TI F ++N +K +I
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG----AAFLTQRVTINEHTVKFEIW 57
Query: 116 DTSG 119
DT+G
Sbjct: 58 DTAG 61
Score = 40.9 bits (96), Expect = 3e-04
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 34/128 (26%)
Query: 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
+A A ++VY + P SF + R + +AS + I +VGNK D E +
Sbjct: 75 NAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEGGE------- 126
Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKE 305
+V + E + + E G F E SAK N+ VF
Sbjct: 127 ---------------------RKVAREEGEKLAE---EKGLLFFETSAKTGENVNDVFLG 162
Query: 306 LLVQAKVK 313
+ + +K
Sbjct: 163 IGEKIPLK 170
Score = 29.8 bits (67), Expect = 1.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 355 FVEASAKDNTNITQVFKELLVQAKVK 380
F E SAK N+ VF + + +K
Sbjct: 145 FFETSAKTGENVNDVFLGIGEKIPLK 170
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 49.2 bits (118), Expect = 5e-07
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 43/141 (30%)
Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
F MRA D ILV A DD P + E I +H KA+ VPI+V NK D
Sbjct: 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NH---AKAA-NVPIIVAINKMDK 119
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQVDW--ENGFVEA 291
+ N PD+V + E ++V +W + F +
Sbjct: 120 PEAN-----------------------------PDRVMQELMEYNLVPEEWGGDTIFCKL 150
Query: 292 SAKDNTNITQVFKELLVQAKV 312
SAK + + + +L+ +++
Sbjct: 151 SAKTKEGLDHLLEMILLVSEM 171
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 342 TTESVVQVDW--ENGFVEASAKDNTNITQVFKELLVQAKV 379
++V +W + F + SAK + + + +L+ +++
Sbjct: 132 MEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 49.2 bits (117), Expect = 3e-06
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 52 ESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI---------EEMHHED 102
G + H KV ++G GK+S++ + + TF PK +T + +
Sbjct: 31 SKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90
Query: 103 FSMNGVHLKLDILDTSG 119
D G
Sbjct: 91 NDDELKECLFHFWDFGG 107
Score = 44.6 bits (105), Expect = 7e-05
Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 46/179 (25%)
Query: 186 ISSADAFILVYAIDDPNSFEE----IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
++ + ++L+ D + +R I + P++VV NK D + + +
Sbjct: 119 MTRSSVYMLLL---DSRTDSNKHYWLRHIEKY------GGKSPVIVVMNKIDE-NPSYNI 168
Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
+ + EN F S K+ +
Sbjct: 169 EQKKI--NERFPAI-----------------------------ENRFHRISCKNGDGVES 197
Query: 302 VFKELLVQA-KVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEAS 359
+ K L L + + + Y V ++ ++G +
Sbjct: 198 IAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPG 256
Score = 30.0 bits (67), Expect = 2.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 352 ENGFVEASAKDNTNITQVFKEL 373
EN F S K+ + + K L
Sbjct: 181 ENRFHRISCKNGDGVESIAKSL 202
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 47.3 bits (112), Expect = 3e-06
Identities = 26/202 (12%), Positives = 54/202 (26%), Gaps = 57/202 (28%)
Query: 45 VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHE 101
+ + ++ ++++MG + GKSSI + SP +E +++ +
Sbjct: 3 HHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKD 61
Query: 102 DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQ 161
D S + + I D G+ M ++
Sbjct: 62 DISNSS-FVNFQIWDFPGQMD----------------------FFDPTFDYEMIFR---- 94
Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221
A I V D RL K +
Sbjct: 95 --------------------------GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP 128
Query: 222 AVPIVVVGNKSDLADENRQVDL 243
+ V +K D ++ +++
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIET 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 46.2 bits (110), Expect = 6e-06
Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 186 ISSADAFILVYAIDDPNS-FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
++ ++ VY + + + ++ +I + +AS+ P+++VG D++DE ++
Sbjct: 77 MTQRALYLAVYDLSKGQAEVDAMKPWLFNI-KARASS-SPVILVGTHLDVSDEKQRKACM 134
Query: 245 GGPFQTYLS--GLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
+ L+ G P + +++ + ++
Sbjct: 135 SKITKELLNKRGFPAIRDY--------------------------HFVNATEESDALAKL 168
Query: 303 FKEL 306
K +
Sbjct: 169 RKTI 172
Score = 45.8 bits (109), Expect = 9e-06
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPK--YKRTI------EEMHHEDFSMNGVHLKLD 113
R K++++G GK++++ + + S T+ + D + L+
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDL--VLN 59
Query: 114 ILDTSG 119
+ D +G
Sbjct: 60 VWDFAG 65
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 43.3 bits (103), Expect = 2e-04
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 43/141 (30%)
Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
F +MRA + D +LV A DD P + E I H KA+ VP+VV NK D
Sbjct: 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QH---AKAA-QVPVVVAVNKIDK 115
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQVDW--ENGFVEA 291
+ + PD+V + ++ ++ +W E+ FV
Sbjct: 116 PEAD-----------------------------PDRVKNELSQYGILPEEWGGESQFVHV 146
Query: 292 SAKDNTNITQVFKELLVQAKV 312
SAK T I ++ +L+QA+V
Sbjct: 147 SAKAGTGIDELLDAILLQAEV 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.7 bits (94), Expect = 0.001
Identities = 36/287 (12%), Positives = 72/287 (25%), Gaps = 31/287 (10%)
Query: 59 HDTRHKVVVMGGPKVGKSSII-----HRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLD 113
+++V+G K GKS+ + L + +P + + +
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGK 125
Query: 114 ILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKL----TSL 169
Q+ K K + P V+ P L +
Sbjct: 126 SPQQLDFQNFK-------YKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEI 178
Query: 170 AMTCSTNEFPAMRALS---ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIV 226
+ N+ A LS +++ A + V P + E R + ++I + +
Sbjct: 179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI----KGRGLTVF 234
Query: 227 VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN 286
+ N D E+ Q + L A+ + E V ++
Sbjct: 235 FLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQ 294
Query: 287 GFVEASAKDN--------TNITQVFKELLVQAKVKYNLSPALRRRRR 325
L + + L R
Sbjct: 295 ALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARL 341
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 40.3 bits (95), Expect = 0.002
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 23/147 (15%)
Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
F +R + AD IL+ I++ P + E + ++R + P VV NK D
Sbjct: 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--------RTPFVVAANKIDR 134
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-------SVVQVDW--E 285
R + G PF S V ++ ++ E D+ +
Sbjct: 135 IHGWRVHE--GRPFMETFSKQDIQV-QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQ 191
Query: 286 NGFVEASAKDNTNITQVFKELLVQAKV 312
+ SA I ++ L+ A+
Sbjct: 192 VSIIPISAITGEGIPELLTMLMGLAQQ 218
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 39.2 bits (91), Expect = 0.002
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTS 118
K+++MG GKSS+ +++ +S R + ++ H G ++ L++ D
Sbjct: 3 GSKLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCG 60
Query: 119 G 119
G
Sbjct: 61 G 61
Score = 38.4 bits (89), Expect = 0.005
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE-TKASTAVPIVVVGNKSDL 234
N F + I V+ ++ ++I + + + K S I V+ +K DL
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 127
Query: 235 ADENRQVDL 243
+++ +L
Sbjct: 128 VQLDKREEL 136
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 182 RALS-ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
RA I AD + + ++ + + + F + +PI VV NK+D+ E
Sbjct: 76 RAWQEIEQADRVLFMVDGTTTDAVDPAEIWPE--FIARLPAKLPITVVRNKADITGETLG 133
Query: 241 VDLTGGPFQTYLS 253
+ G LS
Sbjct: 134 MSEVNGHALIRLS 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 36.8 bits (86), Expect = 0.022
Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 43/141 (30%)
Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
F AMRA D ILV A DD + E I H K + VPIV+ NK D
Sbjct: 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESI----QHA---KDA-HVPIVLAINKCDK 116
Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-DW--ENGFVEA 291
A+ + P++V + V D+ + V
Sbjct: 117 AEAD-----------------------------PEKVKKELLAYDVVCEDYGGDVQAVHV 147
Query: 292 SAKDNTNITQVFKELLVQAKV 312
SA N+ + + + A++
Sbjct: 148 SALTGENMMALAEATIALAEM 168
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN, alpha and beta proteins, hydrolase;
HET: FMC; 1.70A {Staphylococcus aureus}
Length = 230
Score = 35.4 bits (82), Expect = 0.032
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 29/107 (27%)
Query: 151 QRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLI 210
Q P+A+++ L + + I S D+FI S E+ + I
Sbjct: 115 QMPVAFQSS----KPLIEKVSQVVQQQQLTAKVGLIVSGDSFI--------GSVEQRQKI 162
Query: 211 RDHIFETKA----STA---------VPIVVVGNK--SDLADENRQVD 242
+ A +TA VP VVV + SDLA+ ++
Sbjct: 163 KKAFPNAMAVEMEATAIAQTCYQFNVPFVVV--RAVSDLANGEAEMS 207
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 34.7 bits (80), Expect = 0.040
Identities = 31/187 (16%), Positives = 51/187 (27%), Gaps = 49/187 (26%)
Query: 55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH-LKLD 113
+ + K+V G GK++ + +++Y+ K + + ED L LD
Sbjct: 7 NFANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD 65
Query: 114 ILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTC 173
I GE G + L+
Sbjct: 66 I----GEVKGFKTRF--HLYT-------------------------------------VP 82
Query: 174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEI----RLIRDHIFETKASTAVPIVVVG 229
+ A R L + D + V + + VPIV+
Sbjct: 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142
Query: 230 NKSDLAD 236
NK DL D
Sbjct: 143 NKRDLPD 149
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter
pylori} PDB: 3nm5_A* 3nm4_A*
Length = 230
Score = 34.3 bits (79), Expect = 0.082
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 30/107 (28%)
Query: 151 QRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLI 210
+ + +T L +LA + + A++ I+S D F+ +S E +
Sbjct: 116 ESAIFIETS----GSLNALAKKIANEQHIALKEGVIASGDQFV--------HSKERKEFL 163
Query: 211 RDHIFETKA----STA---------VPIVVVGNK--SDLADENRQVD 242
F+ A + VP V+ + SD ADE +
Sbjct: 164 VSE-FKASAVEMEGASVAFVCQKFGVPCCVL--RSISDNADEKAGMS 207
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT;
1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A*
1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A*
Length = 234
Score = 34.0 bits (78), Expect = 0.090
Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 25/105 (23%)
Query: 151 QRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLI 210
P +K D KL + A C I S DAFI N + I
Sbjct: 116 GCPAGFKAD----DKLIAAAEACIAELNLNAVRGLIVSGDAFI--------NGSVGLAKI 163
Query: 211 RDHIFETKA----STA---------VPIVVVGNKSDLADENRQVD 242
R + + A +TA VP VVV SD+AD+ +
Sbjct: 164 RHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLS 208
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.9 bits (77), Expect = 0.14
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSG 119
V++MG + GKSSI + +++ P +E E FS L +++ G
Sbjct: 2 VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTLI---DLAVMELPG 55
Score = 28.5 bits (63), Expect = 7.4
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 187 SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
S A + V D L + K + ++ I V+ +K D E+ +VD
Sbjct: 71 KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA 127
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.26
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 16/43 (37%)
Query: 8 EIRKLRPSLHSQFFVSAENAGSQFLQPSLNFNRILNLVSASSE 50
++KL+ SL + + + ++A P+L A+ E
Sbjct: 21 ALKKLQASL--KLY-ADDSA------PALAIK-------ATME 47
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 32.6 bits (75), Expect = 0.37
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 189 ADAFILVYAID----DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN--RQVD 242
+ L+ ID + E ++ + + E S PI+V NK D + + +++D
Sbjct: 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS-GKPILVTLNKIDKINGDLYKKLD 314
Query: 243 LTGGPFQTYLSGLPDSVC 260
L + S + D +
Sbjct: 315 LVEKLSKELYSPIFDVIP 332
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.46
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 182 RALS-ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
R+ ++ AD + + + +E+ IR+ A A + V NK D A
Sbjct: 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELK---AAHPAAKFLTVANKLDRAAN 358
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 0.89
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 65 VVVMGGPKVGKSSIIHRF----LYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSG 119
++ +G +GKS+++ + + ++ + + D + V LKL I+ T G
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 31.3 bits (72), Expect = 1.00
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 182 RALS-ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
R+ ++AD +L + + I + + P+++V NK DL ++
Sbjct: 296 RSRQAANTADLVLLTIDAATGWT-TGDQEIYEQV------KHRPLILVMNKIDLVEKQLI 348
Query: 241 VDL 243
L
Sbjct: 349 TSL 351
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.2 bits (71), Expect = 1.0
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 185 SISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
AD ILV D + E D + +P VVV NK D+ E +
Sbjct: 110 VFYRADCGILV--TDSAPTPYE-----DDVVNLFKEMEIPFVVVVNKIDVLGEKAE 158
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.1 bits (70), Expect = 1.1
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 174 STNEFPAMRALSISSADAFILVY-AIDDPNSF-EEI-RLIRDHIFETKASTAVPIVVVGN 230
++F +M S + + D SF + R D+ PI++VGN
Sbjct: 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADN----------PILLVGN 106
Query: 231 KSDLADEN 238
K+DL +
Sbjct: 107 KADLLPRS 114
Score = 29.9 bits (67), Expect = 2.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 62 RHKVVVMGGPKVGKSSIIHRFL 83
V V+G VGKS+ I+R +
Sbjct: 162 GGDVYVVGCTNVGKSTFINRII 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.5 bits (69), Expect = 1.2
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 184 LSISSADAFILVYAID---DPNSFEEIRLIRDHIF---ETKASTAVPIVVVGNKSDLAD 236
L + L++ +D DP I E+ + I++ NKS+L
Sbjct: 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 37 NFNRILNLVS--ASSENESGSSEGHDTRH-KVVVMGGPKVGKSSII 79
N+I+ + + ++G R + +++G P VGKS++I
Sbjct: 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLI 137
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.8 bits (69), Expect = 1.5
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 43 NLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSII 79
N+ +S E + V V G GKSS I
Sbjct: 50 NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI 86
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 30.3 bits (69), Expect = 1.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 64 KVVVMGGPKVGKSSII 79
+V+++G P GKS+II
Sbjct: 101 RVLIVGVPNTGKSTII 116
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 30.5 bits (69), Expect = 1.7
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 190 DAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
D ++V + + E + ++ +PI+VV KSD A
Sbjct: 98 DLALIVVDAKEGPKTQTGEHMLILD--------HFNIPIIVVITKSDNAGT 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.0 bits (67), Expect = 1.7
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 50 ENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFL-YNTF--SPKYKRTIEEMHHEDFSMN 106
+ G E +++ ++V++G GKS+ + L F K ++ S
Sbjct: 17 QGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK 76
Query: 107 GVHLKLDILDTSG 119
L ++DT G
Sbjct: 77 ETELV--VVDTPG 87
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.7 bits (67), Expect = 2.0
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 185 SISSADAFILVY-AIDDPNSFEEIRLIRDHIF---ETKASTAVPIVVVGNKSDLAD 236
I + + DP I E+ + I++ NKS+L
Sbjct: 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.2 bits (69), Expect = 2.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 182 RAL-SISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
R L I AD + V P EE R I + I +VV NK D+ ++
Sbjct: 316 RTLQEIEKADIVLFVLDASSPLD-EEDRKILERI------KNKRYLVVINKVDVVEK 365
Score = 27.9 bits (63), Expect = 9.7
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 24/68 (35%)
Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKR------------TIEEMHHEDFSMNGVHLK 111
++V++G P VGKS+ L N R I E + G+ +
Sbjct: 245 RMVIVGKPNVGKST-----LLNRLL-NEDRAIVTDIPGTTRDVISEE----IVIRGILFR 294
Query: 112 LDILDTSG 119
I+DT+G
Sbjct: 295 --IVDTAG 300
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.9 bits (67), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 64 KVVVMGGPKVGKSSIIHRFL 83
V V+G VGKS+ I+R +
Sbjct: 162 DVYVVGCTNVGKSTFINRMI 181
Score = 29.2 bits (65), Expect = 3.8
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
+ + S A +V D S+ + + + +++VGNK+DL ++
Sbjct: 63 LNGIGKSDALVVKIVDIFDFNGSW--LPGLHRFVGNN------KVLLVGNKADLIPKS 112
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.8 bits (67), Expect = 2.5
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 192 FILVYAIDDPNSFEEIRLIRDHI---FETKASTAVPIVVVGNKSDLADENRQVDL 243
+I + EE + + + F+ P +VV NK D+ADE L
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVHGEFKDL-----PFLVVINKIDVADEENIKRL 301
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure,
ATP binding, CHOL biosynthesis, structural genomics,
PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5
d.58.26.2
Length = 416
Score = 29.9 bits (66), Expect = 2.7
Identities = 26/100 (26%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD--- 200
CLR R D LP+ S N FP L+ S+A LV AI
Sbjct: 98 CLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQ 157
Query: 201 -PNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
P S EI R+ R S V +
Sbjct: 158 LPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHD 197
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.8 bits (68), Expect = 2.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 52 ESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFL 83
++ ++ + ++G P VGKSS+++ L
Sbjct: 165 NIPETKYNEEVIQFCLIGRPNVGKSSLVNAML 196
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 29.4 bits (67), Expect = 3.5
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 40 RILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFL 83
I+ + + E D KV ++G P VGKS++ + L
Sbjct: 159 TIIKKLEEKGLDLESKPEITDAI-KVAIVGRPNVGKSTLFNAIL 201
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 28.8 bits (65), Expect = 3.8
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
++ + I+V +D D R + + +++ NK D+ +
Sbjct: 82 TNTEFVIVV--VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 28.8 bits (65), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 194 LVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+V+ +D D E + D + + VPI+++GNK D +
Sbjct: 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 4.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 64 KVVVMGGPKVGKSSIIH------RFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117
++VMG VGKSS ++ + F + R + S G L I+DT
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS----RSRAGFTLN--IIDT 94
Query: 118 SG 119
G
Sbjct: 95 PG 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.4 bits (64), Expect = 4.5
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ I V +D D +E + + ++V NK D+ +
Sbjct: 95 QNTQGLIFV--VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ A I V +D D + + + + ++V NK D
Sbjct: 84 ADTAAVIFV--VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.3 bits (64), Expect = 5.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ D I V ID D FEE + E + + VP+++ NK DL
Sbjct: 82 ENTDILIYV--IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.4 bits (64), Expect = 5.2
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
++ + I+V +D D R + + +++ NK D+ +
Sbjct: 87 TNTEFVIVV--VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.9 bits (63), Expect = 6.1
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
S+ DA I V +D D + + + E + +VV NK D+
Sbjct: 73 SNTDAVIYV--VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 28.6 bits (64), Expect = 6.1
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 550 ENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPV 588
EN + I+F +W I S + EI P +
Sbjct: 220 ENLRRQRQISFFNSWGISTAAS----LAEIRSEFPASTM 254
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 27.9 bits (63), Expect = 6.9
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
+ I V +D D E R + ++V NK DL +
Sbjct: 66 QNTQGLIFV--VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
S DA I V +D D + + + + +++ NK DL D
Sbjct: 88 SDTDAVIYV--VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.6 bits (62), Expect = 7.7
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 187 SSADAFILVYAID--DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
S D I V +D D ++ + + + +++ NK DL
Sbjct: 84 ESTDGLIWV--VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 8.0
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 64 KVVVMGGPKVGKSSIIH------RFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117
V+V+G VGKSS ++ + F + R + +M G + I+DT
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM----VSRTMGGFTIN--IIDT 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.4 bits (63), Expect = 8.4
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKR----TIEEMHHEDFSMNGVHLKLDI 114
+V G GK+ +FLYN + T EE +D N D+
Sbjct: 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-TPQDIIKNARSFGWDL 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,029,191
Number of extensions: 540518
Number of successful extensions: 1706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 397
Length of query: 592
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 493
Effective length of database: 3,937,614
Effective search space: 1941243702
Effective search space used: 1941243702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)