Query psy15240
Match_columns 155
No_of_seqs 141 out of 1091
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:53:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08150 enoyl-CoA hydratase; 100.0 5.3E-39 1.1E-43 243.0 16.7 153 1-155 99-251 (255)
2 PRK05862 enoyl-CoA hydratase; 100.0 8.6E-39 1.9E-43 242.1 17.0 153 1-155 101-253 (257)
3 PRK08252 enoyl-CoA hydratase; 100.0 7.5E-39 1.6E-43 242.1 16.3 153 1-155 98-250 (254)
4 PLN02600 enoyl-CoA hydratase 100.0 1.2E-38 2.6E-43 240.5 16.9 153 1-155 95-247 (251)
5 PRK05980 enoyl-CoA hydratase; 100.0 8.5E-39 1.8E-43 242.5 15.9 153 1-155 107-259 (260)
6 PRK09076 enoyl-CoA hydratase; 100.0 1.1E-38 2.5E-43 241.6 16.5 153 1-155 102-254 (258)
7 PRK06142 enoyl-CoA hydratase; 100.0 8.8E-39 1.9E-43 243.8 16.0 154 1-155 116-269 (272)
8 TIGR02280 PaaB1 phenylacetate 100.0 1.2E-38 2.7E-43 241.1 16.6 153 1-155 100-252 (256)
9 PRK06563 enoyl-CoA hydratase; 100.0 1.5E-38 3.2E-43 240.6 16.2 153 1-155 99-251 (255)
10 PRK08140 enoyl-CoA hydratase; 100.0 2.3E-38 5.1E-43 240.3 17.0 153 1-155 106-258 (262)
11 PRK06494 enoyl-CoA hydratase; 100.0 1.9E-38 4.1E-43 240.5 16.3 153 1-155 101-255 (259)
12 PRK09245 enoyl-CoA hydratase; 100.0 2E-38 4.3E-43 241.2 16.2 153 1-155 110-262 (266)
13 PRK07658 enoyl-CoA hydratase; 100.0 2.7E-38 5.8E-43 239.4 16.5 153 1-155 101-253 (257)
14 PRK09674 enoyl-CoA hydratase-i 100.0 3.1E-38 6.6E-43 238.9 16.8 153 1-155 99-251 (255)
15 PLN02664 enoyl-CoA hydratase/d 100.0 2.2E-38 4.7E-43 242.0 16.1 154 1-155 118-271 (275)
16 PRK08138 enoyl-CoA hydratase; 100.0 3.8E-38 8.3E-43 239.0 16.6 153 1-155 105-257 (261)
17 PRK07657 enoyl-CoA hydratase; 100.0 3.5E-38 7.6E-43 239.1 16.4 153 1-155 104-256 (260)
18 PRK08258 enoyl-CoA hydratase; 100.0 4.5E-38 9.9E-43 240.5 16.8 153 1-155 120-273 (277)
19 PRK07799 enoyl-CoA hydratase; 100.0 3E-38 6.5E-43 239.9 15.6 153 1-155 107-259 (263)
20 PRK06127 enoyl-CoA hydratase; 100.0 5.3E-38 1.1E-42 239.2 16.7 153 1-155 113-265 (269)
21 PRK06143 enoyl-CoA hydratase; 100.0 5.6E-38 1.2E-42 237.5 16.7 150 1-153 107-256 (256)
22 KOG1680|consensus 100.0 1.5E-38 3.3E-43 235.9 13.1 153 1-155 134-286 (290)
23 PRK03580 carnitinyl-CoA dehydr 100.0 6.1E-38 1.3E-42 237.9 16.6 153 1-155 101-257 (261)
24 PRK05809 3-hydroxybutyryl-CoA 100.0 7.2E-38 1.6E-42 237.4 16.9 153 1-155 104-256 (260)
25 PLN03214 probable enoyl-CoA hy 100.0 7.8E-38 1.7E-42 239.1 17.2 153 1-155 114-267 (278)
26 PLN02888 enoyl-CoA hydratase 100.0 7.3E-38 1.6E-42 237.9 16.8 153 1-155 106-260 (265)
27 PRK08139 enoyl-CoA hydratase; 100.0 8.7E-38 1.9E-42 237.6 16.5 152 1-155 111-262 (266)
28 PRK05981 enoyl-CoA hydratase; 100.0 9.4E-38 2E-42 237.5 16.6 153 1-155 110-262 (266)
29 TIGR01929 menB naphthoate synt 100.0 6.5E-38 1.4E-42 237.5 15.4 152 1-155 104-255 (259)
30 PRK07511 enoyl-CoA hydratase; 100.0 1.3E-37 2.8E-42 236.0 16.7 153 1-155 105-257 (260)
31 PRK06688 enoyl-CoA hydratase; 100.0 1.6E-37 3.5E-42 235.3 16.4 153 1-155 103-255 (259)
32 PRK09120 p-hydroxycinnamoyl Co 100.0 2.6E-37 5.7E-42 236.0 17.2 151 1-153 111-264 (275)
33 PRK05995 enoyl-CoA hydratase; 100.0 2.2E-37 4.8E-42 235.0 16.6 152 1-155 106-258 (262)
34 PRK08259 enoyl-CoA hydratase; 100.0 2.2E-37 4.7E-42 234.1 16.4 151 1-154 100-250 (254)
35 PRK07260 enoyl-CoA hydratase; 100.0 2.3E-37 4.9E-42 234.1 16.5 151 1-153 105-255 (255)
36 PRK06210 enoyl-CoA hydratase; 100.0 1.7E-37 3.6E-42 236.8 15.3 153 1-155 115-268 (272)
37 PRK07396 dihydroxynaphthoic ac 100.0 3.2E-37 7E-42 235.3 16.7 152 1-155 114-265 (273)
38 PRK07468 enoyl-CoA hydratase; 100.0 3E-37 6.6E-42 234.2 16.3 152 1-155 107-258 (262)
39 PRK05674 gamma-carboxygeranoyl 100.0 2.6E-37 5.7E-42 234.9 15.8 152 1-155 108-260 (265)
40 PRK07659 enoyl-CoA hydratase; 100.0 2.6E-37 5.6E-42 234.4 15.4 152 1-155 105-256 (260)
41 TIGR03210 badI 2-ketocyclohexa 100.0 4.5E-37 9.7E-42 232.6 16.3 152 1-155 101-252 (256)
42 PRK11423 methylmalonyl-CoA dec 100.0 4.3E-37 9.2E-42 233.3 15.5 153 1-155 103-257 (261)
43 PF00378 ECH: Enoyl-CoA hydrat 100.0 9.1E-37 2E-41 229.5 16.4 149 1-151 97-245 (245)
44 PRK07327 enoyl-CoA hydratase; 100.0 1.2E-36 2.5E-41 231.7 16.6 149 1-155 113-264 (268)
45 PRK06023 enoyl-CoA hydratase; 100.0 1.5E-36 3.2E-41 229.2 17.0 148 1-151 104-251 (251)
46 PRK07938 enoyl-CoA hydratase; 100.0 8.1E-37 1.8E-41 230.3 15.4 149 1-154 101-249 (249)
47 PLN02921 naphthoate synthase 100.0 1.7E-36 3.7E-41 235.9 17.2 152 1-155 168-319 (327)
48 PRK05864 enoyl-CoA hydratase; 100.0 9.4E-37 2E-41 233.1 15.4 153 1-155 116-271 (276)
49 PRK06495 enoyl-CoA hydratase; 100.0 1.5E-36 3.3E-41 229.9 16.1 150 1-155 104-253 (257)
50 PRK06144 enoyl-CoA hydratase; 100.0 1.8E-36 4E-41 230.0 15.9 149 1-155 109-258 (262)
51 PRK08260 enoyl-CoA hydratase; 100.0 1.3E-36 2.9E-41 234.3 15.4 153 1-155 120-274 (296)
52 PRK07509 enoyl-CoA hydratase; 100.0 2.2E-36 4.8E-41 229.5 15.7 151 1-155 109-259 (262)
53 PRK08321 naphthoate synthase; 100.0 3.3E-36 7.1E-41 232.6 16.9 153 1-155 142-294 (302)
54 TIGR03189 dienoyl_CoA_hyt cycl 100.0 7.9E-36 1.7E-40 225.2 16.6 150 1-155 96-247 (251)
55 PRK07854 enoyl-CoA hydratase; 100.0 5.6E-36 1.2E-40 225.0 15.4 147 1-155 93-239 (243)
56 PRK07110 polyketide biosynthes 100.0 1.6E-35 3.5E-40 223.3 16.6 147 1-149 101-247 (249)
57 PRK05870 enoyl-CoA hydratase; 100.0 6.6E-36 1.4E-40 225.4 13.0 147 1-151 102-249 (249)
58 PRK06072 enoyl-CoA hydratase; 100.0 5.4E-35 1.2E-39 220.3 16.3 149 1-155 96-244 (248)
59 PRK12478 enoyl-CoA hydratase; 100.0 6.6E-35 1.4E-39 224.9 16.6 149 1-155 119-277 (298)
60 PRK07112 polyketide biosynthes 100.0 6.4E-35 1.4E-39 220.7 15.9 149 1-155 103-251 (255)
61 PRK07827 enoyl-CoA hydratase; 100.0 3.1E-35 6.7E-40 223.0 13.9 150 1-155 108-257 (260)
62 PRK06190 enoyl-CoA hydratase; 100.0 1.2E-34 2.5E-39 219.5 17.0 150 1-152 101-253 (258)
63 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.1E-34 2.4E-39 219.7 16.1 151 1-154 105-255 (257)
64 TIGR03222 benzo_boxC benzoyl-C 100.0 6.7E-35 1.4E-39 238.8 13.1 153 1-155 373-540 (546)
65 PRK05617 3-hydroxyisobutyryl-C 100.0 4.1E-35 8.8E-40 229.7 9.4 151 1-154 107-321 (342)
66 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.4E-34 5.1E-39 236.1 12.6 154 1-155 376-544 (550)
67 PLN02874 3-hydroxyisobutyryl-C 100.0 2E-33 4.3E-38 222.7 12.4 152 1-155 112-335 (379)
68 KOG0016|consensus 100.0 1.2E-32 2.6E-37 202.6 13.5 152 1-154 114-265 (266)
69 PRK08788 enoyl-CoA hydratase; 100.0 5.5E-32 1.2E-36 207.3 14.6 147 1-150 128-275 (287)
70 PRK06213 enoyl-CoA hydratase; 100.0 6.5E-32 1.4E-36 201.4 14.0 129 1-131 98-227 (229)
71 PRK11730 fadB multifunctional 100.0 9.4E-32 2E-36 227.5 16.3 151 1-153 109-298 (715)
72 PRK05869 enoyl-CoA hydratase; 100.0 1E-31 2.2E-36 199.4 12.8 115 1-117 106-220 (222)
73 PRK11154 fadJ multifunctional 100.0 2.7E-31 5.9E-36 224.6 16.4 150 1-152 108-294 (708)
74 PRK08290 enoyl-CoA hydratase; 100.0 5.1E-31 1.1E-35 202.5 15.8 136 1-140 125-262 (288)
75 TIGR02440 FadJ fatty oxidation 100.0 1.5E-30 3.2E-35 219.9 15.9 150 1-152 103-289 (699)
76 KOG1679|consensus 100.0 6.7E-32 1.5E-36 194.1 6.5 153 1-155 131-287 (291)
77 PLN02157 3-hydroxyisobutyryl-C 100.0 2.4E-30 5.2E-35 205.5 13.2 143 1-148 140-282 (401)
78 PRK08272 enoyl-CoA hydratase; 100.0 1E-29 2.3E-34 196.5 15.1 113 1-118 134-246 (302)
79 KOG1681|consensus 100.0 1.3E-30 2.8E-35 188.8 8.7 153 1-154 133-286 (292)
80 TIGR03200 dearomat_oah 6-oxocy 100.0 2.9E-29 6.3E-34 195.1 13.9 113 1-115 131-257 (360)
81 PLN02267 enoyl-CoA hydratase/i 100.0 1.3E-28 2.7E-33 184.7 13.4 118 1-118 101-221 (239)
82 TIGR02437 FadB fatty oxidation 100.0 8.4E-28 1.8E-32 203.3 15.4 151 1-153 109-298 (714)
83 TIGR02441 fa_ox_alpha_mit fatt 99.9 5.5E-27 1.2E-31 198.9 15.7 149 1-151 115-320 (737)
84 PLN02988 3-hydroxyisobutyryl-C 99.9 6.5E-27 1.4E-31 185.3 14.7 147 1-150 112-328 (381)
85 PLN02851 3-hydroxyisobutyryl-C 99.9 4.1E-25 8.8E-30 175.8 15.6 146 1-150 145-361 (407)
86 KOG1682|consensus 99.9 2.3E-25 5E-30 159.4 9.9 152 1-155 132-283 (287)
87 COG0447 MenB Dihydroxynaphthoi 99.9 4.8E-26 1E-30 164.1 5.0 152 1-155 123-274 (282)
88 TIGR03222 benzo_boxC benzoyl-C 99.9 9.4E-25 2E-29 179.2 9.3 101 1-103 126-231 (546)
89 PRK08184 benzoyl-CoA-dihydrodi 99.9 1.6E-24 3.5E-29 178.2 9.8 102 1-104 130-236 (550)
90 cd06558 crotonase-like Crotona 99.9 7.6E-24 1.6E-28 153.9 9.4 95 1-97 100-194 (195)
91 KOG1684|consensus 99.7 2.3E-17 5E-22 126.9 7.7 148 1-151 142-358 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.7 4.2E-17 9E-22 118.2 7.3 87 3-90 70-172 (187)
93 cd07014 S49_SppA Signal peptid 99.5 2.7E-14 5.9E-19 102.6 6.0 88 1-90 78-175 (177)
94 cd07016 S14_ClpP_1 Caseinolyti 99.3 4.1E-12 9E-17 89.8 6.8 79 1-80 65-160 (160)
95 TIGR00705 SppA_67K signal pept 98.9 8.7E-10 1.9E-14 92.3 4.6 101 1-107 385-531 (584)
96 cd00394 Clp_protease_like Case 98.9 6.8E-09 1.5E-13 73.3 6.5 79 1-80 64-161 (161)
97 cd07021 Clp_protease_NfeD_like 98.8 1.3E-08 2.9E-13 73.2 6.1 88 1-89 65-177 (178)
98 cd07022 S49_Sppa_36K_type Sign 98.7 8.2E-08 1.8E-12 71.0 6.8 85 1-89 80-211 (214)
99 cd07019 S49_SppA_1 Signal pept 98.6 8E-08 1.7E-12 70.9 5.9 86 1-89 77-208 (211)
100 TIGR00706 SppA_dom signal pept 98.5 4E-07 8.6E-12 67.0 7.9 90 1-93 68-204 (207)
101 cd07023 S49_Sppa_N_C Signal pe 98.5 2.1E-07 4.5E-12 68.5 5.8 86 1-89 73-205 (208)
102 cd07015 Clp_protease_NfeD Nodu 98.4 1.4E-06 3.1E-11 62.3 7.4 86 3-89 70-171 (172)
103 PRK00277 clpP ATP-dependent Cl 98.2 3E-06 6.4E-11 62.1 4.9 83 1-84 96-197 (200)
104 PRK12319 acetyl-CoA carboxylas 98.2 1.8E-05 3.9E-10 60.0 9.2 71 1-82 143-213 (256)
105 PRK12553 ATP-dependent Clp pro 98.1 5.3E-06 1.1E-10 61.1 5.4 86 1-87 100-206 (207)
106 cd07018 S49_SppA_67K_type Sign 98.1 9.2E-06 2E-10 60.4 6.6 86 2-91 86-220 (222)
107 PRK14512 ATP-dependent Clp pro 98.0 2.5E-05 5.3E-10 57.2 7.1 89 1-90 88-195 (197)
108 CHL00198 accA acetyl-CoA carbo 97.9 9.5E-05 2.1E-09 57.6 9.0 71 1-82 199-269 (322)
109 cd07013 S14_ClpP Caseinolytic 97.9 4.5E-05 9.8E-10 54.1 6.7 78 2-80 66-162 (162)
110 PLN03230 acetyl-coenzyme A car 97.8 0.00011 2.5E-09 58.8 8.6 70 2-82 267-336 (431)
111 PRK05724 acetyl-CoA carboxylas 97.8 0.00019 4.1E-09 56.0 9.0 70 2-82 197-266 (319)
112 TIGR00513 accA acetyl-CoA carb 97.8 0.00019 4.2E-09 55.9 8.4 70 2-82 197-266 (316)
113 PLN03229 acetyl-coenzyme A car 97.8 0.00018 3.9E-09 61.2 8.8 98 1-109 287-396 (762)
114 cd07017 S14_ClpP_2 Caseinolyti 97.7 3.7E-05 7.9E-10 55.0 3.8 78 2-80 75-171 (171)
115 CHL00028 clpP ATP-dependent Cl 97.6 0.00021 4.4E-09 52.4 6.4 81 2-83 96-196 (200)
116 PF01343 Peptidase_S49: Peptid 97.5 0.00011 2.4E-09 51.6 4.0 90 2-94 14-150 (154)
117 PF00574 CLP_protease: Clp pro 97.5 7.1E-05 1.5E-09 53.9 2.9 81 1-82 81-180 (182)
118 TIGR00493 clpP ATP-dependent C 97.5 0.00039 8.5E-09 50.6 6.5 80 2-82 92-190 (191)
119 PRK05654 acetyl-CoA carboxylas 97.4 0.001 2.2E-08 51.5 7.9 84 1-103 201-285 (292)
120 PRK14514 ATP-dependent Clp pro 97.4 0.00069 1.5E-08 50.4 6.6 80 2-82 120-218 (221)
121 PF13766 ECH_C: 2-enoyl-CoA Hy 97.3 0.0006 1.3E-08 45.8 5.3 61 90-150 32-92 (118)
122 TIGR03133 malonate_beta malona 97.3 0.0017 3.8E-08 49.7 8.0 73 1-85 143-219 (274)
123 TIGR00515 accD acetyl-CoA carb 97.2 0.0013 2.7E-08 50.8 6.8 81 1-100 200-281 (285)
124 PRK12551 ATP-dependent Clp pro 97.2 0.0015 3.3E-08 47.7 6.4 80 2-82 91-189 (196)
125 PRK07189 malonate decarboxylas 97.1 0.0049 1.1E-07 47.9 9.1 29 1-30 152-182 (301)
126 PRK11778 putative inner membra 97.1 0.0018 3.9E-08 50.9 6.2 89 2-93 162-295 (330)
127 PRK14513 ATP-dependent Clp pro 97.0 0.003 6.5E-08 46.4 6.8 80 2-82 93-191 (201)
128 CHL00174 accD acetyl-CoA carbo 97.0 0.0052 1.1E-07 47.5 8.1 79 1-98 214-293 (296)
129 COG0616 SppA Periplasmic serin 97.0 0.0022 4.7E-08 50.3 6.1 87 1-93 135-271 (317)
130 PRK10949 protease 4; Provision 97.0 0.0029 6.2E-08 53.8 7.1 90 2-94 404-539 (618)
131 KOG1683|consensus 96.8 0.001 2.2E-08 52.5 2.7 151 1-153 155-317 (380)
132 PF01972 SDH_sah: Serine dehyd 96.6 0.01 2.2E-07 45.4 7.1 42 1-43 125-166 (285)
133 PRK12552 ATP-dependent Clp pro 96.6 0.011 2.3E-07 44.1 6.7 78 2-82 115-213 (222)
134 TIGR01117 mmdA methylmalonyl-C 96.6 0.0043 9.4E-08 51.7 5.1 78 1-101 161-246 (512)
135 TIGR03134 malonate_gamma malon 96.3 0.0094 2E-07 44.9 5.0 74 2-86 115-191 (238)
136 PF01039 Carboxyl_trans: Carbo 96.2 0.0071 1.5E-07 50.2 4.6 76 1-99 138-221 (493)
137 COG0740 ClpP Protease subunit 95.8 0.038 8.3E-07 40.4 6.2 80 2-83 93-192 (200)
138 PLN02820 3-methylcrotonyl-CoA 95.5 0.05 1.1E-06 46.0 6.7 77 1-99 212-295 (569)
139 PLN02157 3-hydroxyisobutyryl-C 95.4 0.091 2E-06 42.6 7.8 59 93-151 296-357 (401)
140 COG1030 NfeD Membrane-bound se 95.0 0.074 1.6E-06 43.2 5.8 90 3-93 97-198 (436)
141 COG0825 AccA Acetyl-CoA carbox 94.7 0.13 2.7E-06 39.8 6.3 65 7-82 201-265 (317)
142 TIGR01117 mmdA methylmalonyl-C 94.7 0.19 4.2E-06 42.0 7.8 91 1-101 395-498 (512)
143 COG0777 AccD Acetyl-CoA carbox 94.4 0.11 2.4E-06 39.7 5.3 82 3-103 204-286 (294)
144 COG4799 Acetyl-CoA carboxylase 89.3 0.34 7.3E-06 40.5 2.8 79 1-101 170-255 (526)
145 TIGR00705 SppA_67K signal pept 87.9 3.3 7.1E-05 35.4 7.8 29 65-94 251-279 (584)
146 smart00250 PLEC Plectin repeat 87.1 0.53 1.1E-05 24.8 1.8 18 62-79 18-35 (38)
147 PLN02820 3-methylcrotonyl-CoA 86.2 5.5 0.00012 34.0 8.2 90 3-101 448-557 (569)
148 PF00681 Plectin: Plectin repe 84.5 0.37 7.9E-06 26.5 0.3 20 61-80 17-36 (45)
149 PRK10949 protease 4; Provision 84.4 6.6 0.00014 33.8 8.0 29 65-94 270-298 (618)
150 KOG0840|consensus 76.9 1.3 2.8E-05 33.7 1.1 20 63-82 237-256 (275)
151 PF01039 Carboxyl_trans: Carbo 73.5 10 0.00022 31.7 5.7 91 3-102 376-482 (493)
152 PF09425 CCT_2: Divergent CCT 65.9 4.6 0.0001 19.7 1.3 14 142-155 5-18 (27)
153 PF11524 SeleniumBinding: Sele 49.5 11 0.00024 23.1 1.3 37 61-97 10-46 (81)
154 PRK15362 pathogenicity island 42.3 1.8E+02 0.0038 24.3 7.4 92 55-153 342-433 (473)
155 COG4799 Acetyl-CoA carboxylase 34.7 80 0.0017 26.8 4.6 38 63-101 474-511 (526)
156 PF09371 Tex_N: Tex-like prote 34.4 1.8E+02 0.004 21.2 7.5 71 45-116 106-178 (193)
157 COG0412 Dienelactone hydrolase 31.3 25 0.00055 26.2 1.1 17 2-18 117-133 (236)
158 PRK05270 galactose-1-phosphate 29.1 1.6E+02 0.0035 24.8 5.4 93 34-151 397-492 (493)
159 PF08338 DUF1731: Domain of un 27.2 16 0.00035 20.2 -0.5 31 48-80 7-37 (48)
160 KOG0540|consensus 25.7 1.4E+02 0.0031 25.0 4.5 89 2-102 430-525 (536)
161 PRK02261 methylaspartate mutas 24.3 82 0.0018 21.4 2.5 28 69-98 106-133 (137)
162 KOG4391|consensus 23.9 17 0.00038 27.4 -0.9 82 2-87 154-240 (300)
163 cd01815 BMSC_UbP_N Ubiquitin-l 23.5 77 0.0017 19.4 2.0 17 24-40 2-18 (75)
164 COG4567 Response regulator con 23.3 1.7E+02 0.0037 20.9 3.9 38 59-97 85-124 (182)
165 KOG0033|consensus 22.9 1.5E+02 0.0032 23.2 3.8 93 53-153 198-297 (355)
166 KOG4569|consensus 22.2 49 0.0011 26.2 1.2 36 1-36 175-214 (336)
167 TIGR01239 galT_2 galactose-1-p 21.4 1.9E+02 0.0041 24.4 4.4 15 137-151 474-488 (489)
No 1
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-39 Score=242.98 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=146.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 177 (255)
T PRK08150 99 LHGAVVGGGLELASAAHIRVAD-ESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYL 177 (255)
T ss_pred ECCEEEcHHHHHHHhCCEEEEe-CCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.+++++|+..+|.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus 178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~ 251 (255)
T PRK08150 178 VP-AGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAK 251 (255)
T ss_pred eC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 99 799999999999999999999999999999988777788888888888888999999999999999998875
No 2
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-39 Score=242.13 Aligned_cols=153 Identities=20% Similarity=0.313 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 179 (257)
T PRK05862 101 VAGYALGGGCELAMMCDIIIAA-DTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRV 179 (257)
T ss_pred EccEEeHHHHHHHHHCCEEEEe-CCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEe
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++++.++++++++.+|.++..+|++++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus 180 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 180 VP-ADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred eC-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999998777889999999999999999999999999999998874
No 3
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-39 Score=242.07 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=147.1
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 98 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 176 (254)
T PRK08252 98 VEGYALAGGFELALACDLIVAA-RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRL 176 (254)
T ss_pred ECCEEehHHHHHHHhCCEEEEe-CCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++++.+.+++++++..||.+++.+|++++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus 177 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 177 TE-PGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred cC-cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999988777788889999999999999999999999999998774
No 4
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-38 Score=240.53 Aligned_cols=153 Identities=22% Similarity=0.291 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 95 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v 173 (251)
T PLN02600 95 VEGAALGGGLELALSCDLRICG-EEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYC 173 (251)
T ss_pred ecCeecchhHHHHHhCCEEEee-CCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++++++.+++++|+..||.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus 174 v~-~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 174 VP-AGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999988777889999999999999999999999999999999874
No 5
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.5e-39 Score=242.52 Aligned_cols=153 Identities=17% Similarity=0.273 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 107 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 185 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHLAIAS-ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185 (260)
T ss_pred EcCEEEhhhhHHhHhCCEEEec-CCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcc
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++++.+.++++++++.+|.++..+|+.++.....++.+.++.|...+...+.+++.++++.+|++||+|+
T Consensus 186 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 186 VP-HEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 99 799999999999999999999999999999988777889999999999999999999999999999999875
No 6
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-38 Score=241.55 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=147.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 102 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 180 (258)
T PRK09076 102 INGYAMGGGLECALACDIRIAE-EQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEV 180 (258)
T ss_pred ECCEEecHHHHHHHhCCEEEec-CCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.+++++++..+|.+++.+|++++.....++.+.++.|...+..++.+++.++++++|++||+|+
T Consensus 181 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 181 VE-KGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred cC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 99 799999999999999999999999999999988777788999999999999999999999999999998874
No 7
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.8e-39 Score=243.83 Aligned_cols=154 Identities=15% Similarity=0.223 Sum_probs=147.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus 116 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~v 194 (272)
T PRK06142 116 VQGWCIGGGVDLISACDMRYAS-ADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRV 194 (272)
T ss_pred ecCccccchHHHHHhCCEEEec-CCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+++.+++.+.+.+++++++..||.+++.+|+.++.....++++.++.+...+...+.+++.++++.+|++||+|+
T Consensus 195 v~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 195 YDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 994489999999999999999999999999999988777888999999999999999999999999999999875
No 8
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.2e-38 Score=241.13 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=147.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 100 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 178 (256)
T TIGR02280 100 VNGVAAGAGANLALACDIVLAA-ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQV 178 (256)
T ss_pred ECCeeehHHHHHHHhCCEEEec-CCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++.+++.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus 179 v~-~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 179 VD-DAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 99 799999999999999999999999999999988777888899999999999999999999999999999874
No 9
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-38 Score=240.57 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=147.1
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus 99 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 177 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAA-DNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEec-CCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.+++++++..||.+++.+|+.++.....++.+.++.|...+..++.+++.++++.+|++||+|+
T Consensus 178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 178 VP-PGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred eC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 99 799999999999999999999999999999988777888899999999999999999999999999998874
No 10
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-38 Score=240.33 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=147.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 184 (262)
T PRK08140 106 VNGVAAGAGANLALACDIVLAA-RSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRV 184 (262)
T ss_pred ECCeeehhHHHHHHhCCEEEec-CCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++++.+.+++++|+..||.++..+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus 185 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 185 VD-DAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 99 788999999999999999999999999999988777889999999999999999999999999999998764
No 11
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-38 Score=240.49 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=145.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus 101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~v 179 (259)
T PRK06494 101 VNGVAMGGGFELALACDLIVAA-ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEV 179 (259)
T ss_pred ECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKD--LKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++++.+.+++++++..||.++..+|+.++.....++++.++.| ...+..++.+++.++++.+|++||+|+
T Consensus 180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 180 VP-AGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred cC-HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 99 899999999999999999999999999999988777788888887 456788899999999999999998764
No 12
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-38 Score=241.18 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=146.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus 110 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 188 (266)
T PRK09245 110 VNGPAIGAGCDLACMCDIRIAS-ETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRV 188 (266)
T ss_pred ECCEeecHHHHHHHhCCEEEec-CCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++.+.+++++|++.||.+++.+|++++......+++.+..|...+..++.+++.++++.+|++||+|+
T Consensus 189 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 189 VP-ADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 99 899999999999999999999999999999988777788888888888999999999999999999998874
No 13
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-38 Score=239.42 Aligned_cols=153 Identities=25% Similarity=0.368 Sum_probs=147.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 179 (257)
T PRK07658 101 IHGAALGGGLELAMSCHIRFAT-ESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGV 179 (257)
T ss_pred EcCeeeeHHHHHHHhCCEEEec-CCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.++++++++.+|.++..+|++++.....++++.++.|...+..++.+++.++++.+|++|++|+
T Consensus 180 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 180 FP-EETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 99 899999999999999999999999999999988777889999999999999999999999999999998874
No 14
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=3.1e-38 Score=238.86 Aligned_cols=153 Identities=22% Similarity=0.339 Sum_probs=147.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v 177 (255)
T PRK09674 99 VNGYALGAGCELALLCDIVIAG-ENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEV 177 (255)
T ss_pred ECCEeehHHHHHHHhCCEEEec-CCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus 178 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 178 FP-PELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred cC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999988777889999999999999999999999999999998774
No 15
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.2e-38 Score=242.00 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=146.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus 118 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v 196 (275)
T PLN02664 118 IHGACIGGGVDIVTACDIRYCS-EDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRV 196 (275)
T ss_pred ECCccccchHHHHHhCCEEEec-CCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCcee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+++.+++.+.+.+++++|+..+|.+++.+|+.++.....++.+.++.|...+..++.+++.++++++|++||+|+
T Consensus 197 v~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 197 FGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred eCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 994488999999999999999999999999999988777888889999888999999999999999999999874
No 16
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-38 Score=239.05 Aligned_cols=153 Identities=24% Similarity=0.321 Sum_probs=146.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (261)
T PRK08138 105 VNGYALGGGCELAMHADIIVAG-ESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEV 183 (261)
T ss_pred EccEEEcHHHHHHHhCCEEEec-CCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+++.++++++++.||.++..+|+.++.....++++.+..|...+..++.+++.++++++|++||+|+
T Consensus 184 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 184 VE-DEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred cC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 99 789999999999999999999999999999988777788888999999999999999999999999998874
No 17
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-38 Score=239.14 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=147.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 104 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (260)
T PRK07657 104 INGIALGGGLELALACDFRIAA-ESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFV 182 (260)
T ss_pred EcCEeechHHHHHHhCCEEEee-CCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++.+.+++++++..+|.++..+|+.++......+++.++.|...+..++.+++.++++++|+++|+|+
T Consensus 183 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 183 VP-AHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999988777788899999999999999999999999999998874
No 18
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-38 Score=240.45 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=146.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccC-ChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-PFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++|||||++ ++++|++||.++|++| +++++++|++++|..++++++++|++++++||+++||||+
T Consensus 120 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 198 (277)
T PRK08258 120 VDGVCAGAGAILAMASDLRLGT-PSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNR 198 (277)
T ss_pred ECCeeehHHHHHHHhCCEEEec-CCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcE
Confidence 7999999999999999999999 9999999999999995 6788999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|++ .+++++.+.+++++++..||.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+++
T Consensus 199 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 273 (277)
T PRK08258 199 LVE-PEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPV 273 (277)
T ss_pred ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 999 899999999999999999999999999999988777889999999999999999999999999999999874
No 19
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-38 Score=239.86 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=147.1
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus 107 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (263)
T PRK07799 107 VEGPAIAGGTEILQGTDIRVAG-ESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV 185 (263)
T ss_pred ECCeEeccHHHHHHhCCEEEec-CCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus 186 v~-~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 186 VP-DGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred cC-cchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 99 889999999999999999999999999999988777788999999999999999999999999999998874
No 20
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-38 Score=239.19 Aligned_cols=153 Identities=19% Similarity=0.297 Sum_probs=147.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 113 v~G~a~GgG~~LalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 191 (269)
T PRK06127 113 IRGYCIGGGMGIALACDIRIAA-EDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRV 191 (269)
T ss_pred ECCEEecHHHHHHHhCCEEEee-CCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .+++++.+.+++++++..||.+++.+|+.++.....+++..++.|...+..++.+++.++++.+|++|++|+
T Consensus 192 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 192 TA-ADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999988777888889999999999999999999999999998874
No 21
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-38 Score=237.49 Aligned_cols=150 Identities=23% Similarity=0.309 Sum_probs=144.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|+ |+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 107 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 184 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAA-HDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRV 184 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEec-CCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCee
Confidence 7999999999999999999999 99999999999998 778888999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
+| ++++.+.+.+++++++..||.++..+|+.++.....++++.++.|...+...+.+++.++++.+|++||+
T Consensus 185 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 185 VP-LAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 99 8999999999999999999999999999999887778899999999999999999999999999999975
No 22
>KOG1680|consensus
Probab=100.00 E-value=1.5e-38 Score=235.89 Aligned_cols=153 Identities=21% Similarity=0.309 Sum_probs=149.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|++.||+||++ +++.|++++.++|++|.+|++.+|++.+|.++|++++++|++++++||.++||||+|
T Consensus 134 inG~AlgGG~ELalmCDirva~-~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~V 212 (290)
T KOG1680|consen 134 INGFALGGGLELALMCDIRVAG-EGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKV 212 (290)
T ss_pred eeceeeccchhhhhhcceEecc-CCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEe
Confidence 6899999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .++++.++.+|+++|++.||.+++..|+.++...+..+.+.+..|...+...+..++.+|++.+|.+||++|
T Consensus 213 vp-~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~ 286 (290)
T KOG1680|consen 213 VP-SGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPK 286 (290)
T ss_pred ec-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcc
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999998875
No 23
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=6.1e-38 Score=237.92 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=144.1
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 179 (261)
T PRK03580 101 VNGYAFGGGFELALAADFIVCA-DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRV 179 (261)
T ss_pred ECCeeehHHHHHHHHCCEEEec-CCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDL----KNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .+++.+.+.+++++|+..||.+++.+|+.++.....++++.++.|. ..+..++.+++.++++.+|++||+++
T Consensus 180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 180 VP-QAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred cC-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 99 8999999999999999999999999999999887777777777765 36777899999999999999998864
No 24
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=7.2e-38 Score=237.44 Aligned_cols=153 Identities=22% Similarity=0.414 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 104 v~G~a~GgG~~lal~cD~~va~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIAS-EKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKV 182 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEee-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcc
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++||+|+
T Consensus 183 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 183 VE-PEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred cC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 99 799999999999999999999999999999988777889999999999999999999999999999998874
No 25
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=7.8e-38 Score=239.11 Aligned_cols=153 Identities=30% Similarity=0.516 Sum_probs=145.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeeccccccccc-CChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII-APFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~-~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++ |+++++++|++++|+.++++++++|++|+++||+++||||+
T Consensus 114 V~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~ 192 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE 192 (278)
T ss_pred EcCcccchHHHHHHhCCEEEec-CCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence 7999999999999999999999 999999999999994 88888999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|++ .+++++.+.+++++|+..+|.+++.+|+.++.....++++.++.|...+...+.+++.++++.+|++|.++|
T Consensus 193 vv~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~ 267 (278)
T PLN03214 193 VVP-AAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSG 267 (278)
T ss_pred ecC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 999 799999999999999999999999999999998888899999999999999999999999999999986554
No 26
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=7.3e-38 Score=237.90 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=144.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 106 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 184 (265)
T PLN02888 106 INGFAITAGFEIALACDILVAS-RGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHV 184 (265)
T ss_pred ECCeeechHHHHHHhCCEEEec-CCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLI--TSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+.+.+++++++..+|.+++.+|+.++......+++.+..|...+..++ .+++.++++.+|++||++|
T Consensus 185 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 260 (265)
T PLN02888 185 VE-ESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSK 260 (265)
T ss_pred eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Confidence 99 78999999999999999999999999999998877778888888887777775 5899999999999998875
No 27
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.7e-38 Score=237.65 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=144.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++ +++|++++|..+|++++++|++++++||+++||||+|
T Consensus 111 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v 188 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAA-DTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRV 188 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEe-CCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEe
Confidence 7999999999999999999999 9999999999999998764 5689999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++++.+.+++++|+..||.++..+|++++.....++++.++.|...+..++.+++.++++++|++|++|+
T Consensus 189 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 189 VP-ADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999988777888999999999999999999999999999998874
No 28
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-38 Score=237.51 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=147.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+..+++++++|++++++||+++||||+|
T Consensus 110 v~G~a~GgG~~lalacD~~ia~-~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 188 (266)
T PRK05981 110 VNGPAAGVGMSFALMGDLILCA-RSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRV 188 (266)
T ss_pred ECCEeehHHHHHHHhCCEEEec-CCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++.+.+++++++..|+.++..+|++++.....++.+.++.|...+...+.+++.++++.+|++|++|+
T Consensus 189 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 189 VD-DAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred eC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 99 899999999999999999999999999999888777888999999999999999999999999999999874
No 29
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=6.5e-38 Score=237.54 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=140.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 104 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVCDLTIAA-ENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTV 182 (259)
T ss_pred EcCEEehHHHHHHHhCCEEEec-CCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++.+.+.+++++|+..||.+++.+|++++..... .......|...+...+.+++.++++.+|++||+|+
T Consensus 183 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 183 VP-LADLEKETVRWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999876542 34445556677888999999999999999999874
No 30
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-37 Score=236.00 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=147.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus 105 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (260)
T PRK07511 105 VEGAAAGAGFSLALACDLLVAA-RDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRL 183 (260)
T ss_pred ECCeeehHHHHHHHhCCEEEee-CCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+++.++++++++.+|.++..+|+.++.....++.+.++.|...+..++.+|+.++++++|+++++++
T Consensus 184 v~-~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 184 AE-PGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred eC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 99 788999999999999999999999999999988777889999999999999999999999999999999875
No 31
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=235.33 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus 103 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v 181 (259)
T PRK06688 103 VNGPAVGVGVSLALACDLVYAS-ESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRV 181 (259)
T ss_pred ECCeeecHHHHHHHhCCEEEec-CCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+.+.+++++++..|+.++..+|+.++.....++++.+..|...+..++.+++.++++++|++|++|+
T Consensus 182 ~~-~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 182 VP-AAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 99 899999999999999999999999999999998877899999999999999999999999999999998874
No 32
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2.6e-37 Score=235.99 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=141.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 111 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~v 189 (275)
T PRK09120 111 VNGWCFGGGFSPLVACDLAIAA-DEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNES 189 (275)
T ss_pred EcCEEechhHHHHHhCCEEEEe-CCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHhcCH-HHHHHHHHHHhhcc
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLK--NVVDLITSP-QVQKGLGLYLQSLK 153 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~--~~~~~~~~~-~~~~~~~~~~~~~~ 153 (155)
+| ++++++.+.+++++|+..||.+++.+|+.++.....++.+.++.|.. ....++.++ +.++++++|++||.
T Consensus 190 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 190 VP-LAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 99 89999999999999999999999999999999877778888777653 345568888 89999999999876
No 33
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=234.99 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=142.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++++ .++++++|..++++++++|++++++||+++||||+|
T Consensus 106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (262)
T PRK05995 106 VHGDAYAGGMGLVAACDIAVAA-DHAVFCLSEVRLGLIPATIS-PYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEV 183 (262)
T ss_pred ECCEEEhhHHHHHHhCCEEEee-CCCEEeCcccccccCccchH-HHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 7999999999999999999999 99999999999999987765 468999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .+++.+.+.+++++++..||.++..+|+.++.....++.+. ++.|...+..++.+++.++++.+|++||+|+
T Consensus 184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 184 VP-AEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 99 89999999999999999999999999999998766677777 7778888889999999999999999999874
No 34
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=234.06 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=142.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 100 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~v 178 (254)
T PRK08259 100 VSGYAVAGGLELALWCDLRVAE-EDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178 (254)
T ss_pred ECCEEEhHHHHHHHhCCEEEec-CCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
+| .+++++.+.+++++|++.||.+++.+|++++.....++++.++.|...+...+. ++.++++.+|++|+.+
T Consensus 179 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~~ 250 (254)
T PRK08259 179 VP-KGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAGR 250 (254)
T ss_pred eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhcc
Confidence 99 899999999999999999999999999999987777788888888887777777 9999999999998654
No 35
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-37 Score=234.12 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=146.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||++
T Consensus 105 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~v 183 (255)
T PRK07260 105 VDGAVAGAAANMAVAADFCIAS-TKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRV 183 (255)
T ss_pred ecCeeehhhHHHHHhCCEEEEe-CCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
++ .+++.+.+.++++++++.+|.+++.+|+.++.....++++.+..|...+..++.+++.++++.+|++|++
T Consensus 184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 184 AE-SEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred cC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 99 8999999999999999999999999999999987778899999999999999999999999999999875
No 36
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-37 Score=236.80 Aligned_cols=153 Identities=20% Similarity=0.325 Sum_probs=146.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 115 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v 193 (272)
T PRK06210 115 INGACAGIGLTHALMCDVRFAA-DGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRV 193 (272)
T ss_pred ECCeeehHHHHHHHhCCEEEEe-CCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+++.+++++++.. +|.++..+|+.++.....++++.++.|...+..++.+++.++++++|++||+|.
T Consensus 194 v~-~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 194 VP-PDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred cC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 99 899999999999999985 999999999999988777888899999999999999999999999999998763
No 37
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=3.2e-37 Score=235.30 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=141.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.+|++++|.+++++++++|++++++||+++||||+|
T Consensus 114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~v 192 (273)
T PRK07396 114 VAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTV 192 (273)
T ss_pred ECCEEehHHHHHHHhCCEEEee-CCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++++.+.+++++|+..+|.+++.+|+.++.... ..+...+.|...+...+.+++.++++.+|++||+|+
T Consensus 193 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 265 (273)
T PRK07396 193 VP-LADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD 265 (273)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence 99 89999999999999999999999999999987644 344445566777888899999999999999998764
No 38
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-37 Score=234.25 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=142.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++ +.+++|..++++|+++|++++++||+++||||+|
T Consensus 107 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v 184 (262)
T PRK07468 107 IQGQAFGGGVGLISVCDVAIAV-SGARFGLTETRLGLIPATISPY-VVARMGEANARRVFMSARLFDAEEAVRLGLLSRV 184 (262)
T ss_pred ECCEEEhHHHHHHHhCCEEEEe-CCCEEeCchhccCCCcccchhh-HHhhccHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 9999999999999999888876 4566999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .+++.+.+.++++++++.+|.++..+|++++......+++.++.|...+..++.+++.++++.+|++|++++
T Consensus 185 ~~-~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 185 VP-AERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 99 899999999999999999999999999999887655678888889999999999999999999999999874
No 39
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.6e-37 Score=234.88 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=140.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|++++ .++++++|.+++++++++|++|+++||+++||||+|
T Consensus 108 V~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gi~p~~~~-~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (265)
T PRK05674 108 VQGAAFGGALGLISCCDMAIGA-DDAQFCLSEVRIGLAPAVIS-PFVVKAIGERAARRYALTAERFDGRRARELGLLAES 185 (265)
T ss_pred EcCEEEechhhHhhhcCEEEEe-CCCEEeCcccccCCCcchhH-HHHHHHhCHHHHHHHHHhCcccCHHHHHHCCCccee
Confidence 7999999999999999999999 99999999999999987665 469999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEK-DLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++.+.+.+++++++..||.+++.+|+.++.....++++.+.. +...+...+.+++.++++.+|++|++|+
T Consensus 186 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 186 YP-AAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 99 89999999999999999999999999999999877777777654 4456777889999999999999998874
No 40
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-37 Score=234.41 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=145.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus 105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (260)
T PRK07659 105 IHGPAAGLGLSIALTADYVIAD-ISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEV 183 (260)
T ss_pred ecCceecHHHHHHHhCCEEEEc-CCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHH
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ +++.+.+.++++++++.|+.++..+|+.++.....++++.++.|...+...+.+++.++++.+|++||+|+
T Consensus 184 v~--~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 184 IG--GDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred hh--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 94 67899999999999999999999999999988777889999999999999999999999999999999875
No 41
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4.5e-37 Score=232.59 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=137.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~v 179 (256)
T TIGR03210 101 VQGYAIGGGNVLVTICDLTIAS-EKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV 179 (256)
T ss_pred ECCEEehhhHHHHHhCCEEEEe-CCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceee
Confidence 7999999999999999999999 999999999999999888888999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| .+++.+.+.+++++|++.||.+++.+|++++........ ....+...+..++.+++.++++.+|++||+|+
T Consensus 180 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~-~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 180 VP-HDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRG-IAGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999876432111 11123456677889999999999999999875
No 42
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.3e-37 Score=233.29 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=142.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.++++++|+.++++++++|++++++||+++||||+|
T Consensus 103 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~v 181 (261)
T PRK11423 103 VEGSVWGGAFELIMSCDLIIAA-STSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHV 181 (261)
T ss_pred EecEEechHHHHHHhCCEEEec-CCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcc
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNL-MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+| ++++++.+.+++++++..+|.+++.+|+.++.... ... ....+.|...+..++.+++.++++.+|++||+|+
T Consensus 182 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 182 VE-VEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 99 89999999999999999999999999999986543 233 4667777788889999999999999999998874
No 43
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=9.1e-37 Score=229.49 Aligned_cols=149 Identities=28% Similarity=0.432 Sum_probs=145.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++.+|++++|++.+++++++|++++++||+++||||+|
T Consensus 97 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (245)
T PF00378_consen 97 VNGHAVGGGFELALACDFRIAA-EDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEV 175 (245)
T ss_dssp ESSEEETHHHHHHHHSSEEEEE-TTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEE
T ss_pred ccccccccccccccccceEEee-cccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEE
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
++ ++++.+.+.+++++++..|+.+++.+|+.++.......++..+.+...+...+.++++++++++|++|
T Consensus 176 ~~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 176 VP-DEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp ES-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred cC-chhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 99 78899999999999999999999999999999988889999999999999999999999999999987
No 44
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-36 Score=231.70 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=135.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 113 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 191 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAA-KDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLA 191 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEec-CCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS---NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++++.+++++|++.||.+++.+|+.++..... .++..+. ....++.+++.++++.+|++||+|+
T Consensus 192 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~----~~~~~~~~~d~~eg~~af~ekr~p~ 264 (268)
T PRK07327 192 VD-DDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLA----LEFMGFSGPDVREGLASLREKRAPD 264 (268)
T ss_pred cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHHccChhHHHHHHHHHhcCCCC
Confidence 99 899999999999999999999999999999875322 2333333 2335788999999999999999874
No 45
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-36 Score=229.21 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=140.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus 104 v~G~a~GgG~~la~acD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (251)
T PRK06023 104 VDGLAIGIGTTIHLHCDLTFAS-PRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKI 182 (251)
T ss_pred eCCceecHHHHHHHhCCEEEEe-CCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
+| .+++.+++.+++++|+..||.+++.+|+.++... ..+...++.|...+..++.+++.++++++|++|
T Consensus 183 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 183 VD-EEAVEAETLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 99 8999999999999999999999999999998764 467788888888889999999999999999874
No 46
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-37 Score=230.33 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=141.1
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++ +++.+|++++|+.++++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~Lal~cD~ria~-~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v 176 (249)
T PRK07938 101 VHGFCLGGGIGLVGNADVIVAS-DDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEV 176 (249)
T ss_pred EcCEEeehHHHHHHhCCEEEEe-CCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEE
Confidence 7999999999999999999999 999999999999986 456789999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
+| ++++++.+.+++++|+..||.+++.+|+.++.....++++.++.|...+..++.+++.++++++|++||+|
T Consensus 177 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 177 VP-RDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 99 89999999999999999999999999999998776778888888888888999999999999999999876
No 47
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.7e-36 Score=235.87 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=139.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 168 VnG~a~GGG~~LalacD~riA~-~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~v 246 (327)
T PLN02921 168 VAGYAVGGGHILHMVCDLTIAA-DNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTV 246 (327)
T ss_pred ECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEE
Confidence 7999999999999999999999 999999999999999999889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++.+.+++++|+..+|.+++.+|++++..... .......+...+..++.+++.++++.+|++||+|+
T Consensus 247 v~-~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~ 319 (327)
T PLN02921 247 VP-LDELEGETVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPD 319 (327)
T ss_pred eC-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999887543 33333444567788889999999999999998874
No 48
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-37 Score=233.09 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=138.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccC-ChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-PFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++| +++++++|++++|..+|++++++|++++++||+++||||+
T Consensus 116 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~ 194 (276)
T PRK05864 116 VNGPAIGGGLCLALAADIRVAS-SSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSR 194 (276)
T ss_pred ECCEeehhHHHHHHhCCEEEee-CCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 7999999999999999999999 9999999999999997 6788889999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHhhccCC
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMENKEKDLKNV-VDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|++ ++++++++.+++++|+..||.++..+|+.++..... ++++.+..|.... ...+.+++.++++.+|++||+|+
T Consensus 195 vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 195 QVP-DEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred eeC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 999 899999999999999999999999999999876543 5666666665432 23578999999999999998774
No 49
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-36 Score=229.85 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=142.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|+. ++++++++++|+.++++++++|++++++||+++||||++
T Consensus 104 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~v 179 (257)
T PRK06495 104 VNGPALGAGLGLVASCDIIVAS-ENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEAC 179 (257)
T ss_pred ECCeeehhHHHHHHhCCEEEec-CCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCccee
Confidence 7999999999999999999999 999999999999997 446779999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+.+.+++++++..||.++..+|++++.....++++.++.|...+...+.+++.++++.+|++||+|+
T Consensus 180 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 180 LP-PEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999988777888999999999999999999999999999999874
No 50
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-36 Score=229.95 Aligned_cols=149 Identities=21% Similarity=0.315 Sum_probs=138.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeeccccc-ccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK-MGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~-~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++||+||++ ++++|++||++ +|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus 109 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 187 (262)
T PRK06144 109 IAGACVGGGAAIAAACDLRIAT-PSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNE 187 (262)
T ss_pred ECCeeeehHHHHHHhCCEEEec-CCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCe
Confidence 7999999999999999999999 99999999997 999999999999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|++ ++++.+.+.+++++++..||.++..+|+.++...... ++.+...+...+.+++.++++.+|++||+|+
T Consensus 188 vv~-~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~----l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 188 VVE-DAALDARADALAELLAAHAPLTLRATKEALRRLRREG----LPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcC----HHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 999 7999999999999999999999999999998765443 3444567778899999999999999998874
No 51
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-36 Score=234.29 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=139.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus 120 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~v 198 (296)
T PRK08260 120 VNGPAVGVGATMTLAMDIRLAS-TAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSV 198 (296)
T ss_pred ECCeeehHhHHHHHhCCEEEee-CCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTIS-NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++.+.+.+++++++.. +|.++..+|++++..... ........|...+..++.+++.++++.+|++||+|+
T Consensus 199 v~-~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 274 (296)
T PRK08260 199 HP-PDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAV 274 (296)
T ss_pred cC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCC
Confidence 99 899999999999999995 999999999999886431 112233456677888889999999999999998874
No 52
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-36 Score=229.49 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=143.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|...+++++++|++++++||+++||||++
T Consensus 109 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~v 187 (262)
T PRK07509 109 LEGVCFGGGLQIALGADIRIAA-PDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187 (262)
T ss_pred ECCeeecchHHHHHhCCEEEec-CCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhh
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ . +.+.+.+++++++..||.++..+|+.++.....++++.+..|...+...+.+++.++++.+|++||+|+
T Consensus 188 v~-~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 188 SD-D--PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred hc-h--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 97 3 678999999999999999999999999998777788888889999999999999999999999998874
No 53
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=3.3e-36 Score=232.56 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=140.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||+++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||++
T Consensus 142 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v 221 (302)
T PRK08321 142 VPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAV 221 (302)
T ss_pred EcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEe
Confidence 79999999999999999999993489999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+++++++.+++++|+..++.+++.+|++++.... ........|...+..++.+++.++++.+|++|++|+
T Consensus 222 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~ 294 (302)
T PRK08321 222 VP-HAELETEALEWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD 294 (302)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 99 89999999999999999999999999999987654 334445557778888999999999999999998864
No 54
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=7.9e-36 Score=225.16 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=134.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|+.|+ +++++|++++|..++++++++|++++++||+++||||+|
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v 173 (251)
T TIGR03189 96 VRGQCLGGGLEVAAAGNLMFAA-PDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAV 173 (251)
T ss_pred ecCeeeeHHHHHHHhCCEEEEc-CCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccee
Confidence 7999999999999999999999 99999999999999987 457799999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETF-LAQYATIPGAARKLTKLMLREKTISNLMENK-EKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~-a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ +++ +.+.++ +++++..||.+++.+|+.++.....++++.+ ..|...+..++.+++.++++++|++||+|+
T Consensus 174 ~~-~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 174 AE-DPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred cC-cHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 98 443 355565 6899999999999999999987666666655 356677888999999999999999999874
No 55
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-36 Score=225.05 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=137.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|++++++++++|++++++||+++||||+|
T Consensus 93 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v 171 (243)
T PRK07854 93 INGPAIGAGLQLAMACDLRVVA-PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRI 171 (243)
T ss_pred ecCcccccHHHHHHhCCEEEEc-CCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccc
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ .+ .+.+++++|++.||.++..+|+.++.. ..+++.++.|...+..++.+++.++++.+|++|++|+
T Consensus 172 ~~-~~----~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 172 GT-LA----DAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred cC-HH----HHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 76 32 789999999999999999999999875 4577888888888999999999999999999998764
No 56
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.6e-35 Score=223.32 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=142.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 101 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~v 179 (249)
T PRK07110 101 MQGHAIGGGLVLGLYADIVVLS-RESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPV 179 (249)
T ss_pred ecCceechHHHHHHhCCEEEEe-CCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEE
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL 149 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 149 (155)
++ ++++.+.+.++++++++.|+.+++.+|+.++.....++++.++.|...+...+.+++.++++.+..
T Consensus 180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 180 LP-RAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 99 899999999999999999999999999999999888899999999999999999999999998764
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-36 Score=225.42 Aligned_cols=147 Identities=22% Similarity=0.246 Sum_probs=140.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus 102 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v 180 (249)
T PRK05870 102 VNGAAVGAGLNLALAADVRIAG-PKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV 180 (249)
T ss_pred ECCEeEchhHHHHHhCCEEEEc-CCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHH
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
+ +++.+.+.+++++++..||.+++.+|+.++.... .++++.++.|...+...+.+++.++++.+|+++
T Consensus 181 v---~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 181 A---DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred H---hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 9 4688999999999999999999999999998876 678888999999999999999999999999874
No 58
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-35 Score=220.32 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=139.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|++++++++++++|. ++++++++|++++++||+++||||++
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 96 INGVTAGACIGIALSTDFKFAS-RDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred ECCeeehHHHHHHHhCCEEEEc-CCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 7999999999999999999999 999999999999999999999999999996 89999999999999999999999953
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
+ ++.+.+.++++++++.||.++..+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus 174 -~---~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 174 -E---DPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred -c---hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 3 4678899999999999999999999999988777888899999999999999999999999999999874
No 59
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-35 Score=224.88 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=137.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccc-cccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM-GIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~-Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++||+||++ ++++|++||+++ |+++ ++++ .+++|..+|++++++|++++++||+++||||+
T Consensus 119 V~G~a~GgG~~LalacD~ria~-~~A~f~~pe~~l~G~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~ 193 (298)
T PRK12478 119 VHGWCVGGASDYALCADIVIAS-DDAVIGTPYSRMWGAYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINE 193 (298)
T ss_pred EccEEehhHHHHHHHCCEEEEc-CCcEEeccccccccCCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 7999999999999999999999 999999999996 8874 2222 35699999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCHHHH--------HHHHHHHh
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNLMENKEKDLKNVVDLITSPQVQ--------KGLGLYLQ 150 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~~ 150 (155)
||+ ++++++++.+++++|+..||.+++.+|++++.... .++++.++.|...+..++.++|.+ +++.+|++
T Consensus 194 vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~e 272 (298)
T PRK12478 194 AVP-FERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVE 272 (298)
T ss_pred ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998766 358999999999999999999997 59999999
Q ss_pred hccCC
Q psy15240 151 SLKKK 155 (155)
Q Consensus 151 ~~~~k 155 (155)
||+|+
T Consensus 273 kR~p~ 277 (298)
T PRK12478 273 RRDGP 277 (298)
T ss_pred hcCCc
Confidence 99874
No 60
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.4e-35 Score=220.71 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=136.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++ ..+|++++|..++++++++|++++++||+++||||+|
T Consensus 103 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 180 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIAD-ETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAY 180 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEc-CCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCcee
Confidence 7999999999999999999999 9999999999999998764 5689999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ +++. .+.+++++++..+|.++..+|+.++.. ...+.+.++.|.......+.+++.++++.+|++||+|+
T Consensus 181 v~-~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 181 GA-NSDT--LLRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred cC-cHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 99 4442 578899999999999999999999875 44678888889888999999999999999999998864
No 61
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-35 Score=223.02 Aligned_cols=150 Identities=18% Similarity=0.326 Sum_probs=140.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++ ..++++++++|++++++||+++||||++
T Consensus 108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v 185 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDIVVAG-PESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAA 185 (260)
T ss_pred EcCeeecchhhHHHhCCEEEEc-CCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 7999999999999999999999 9999999999999999999999998764 5689999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
++ ++++.+.++++++++.|+.++..+|+.++.....++++.++.+...+..++.+++.++++.+|++|++|+
T Consensus 186 ~~---~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 186 AD---DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred hH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 75 4889999999999999999999999999998877888899999999999999999999999999998874
No 62
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-34 Score=219.50 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=141.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus 101 V~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v 179 (258)
T PRK06190 101 INGAAVTGGLELALACDILIAS-ERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEV 179 (258)
T ss_pred ECCEeecHHHHHHHhCCEEEEe-CCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhhc
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS---PQVQKGLGLYLQSL 152 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~ 152 (155)
++ ++++++.+.++++++++.||.+++.+|++++.....++++.++.|...+..++.+ ....+..++|+.+.
T Consensus 180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (258)
T PRK06190 180 VP-HDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARG 253 (258)
T ss_pred cC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Confidence 99 8999999999999999999999999999999887778999999999999999988 55677777777653
No 63
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.1e-34 Score=219.70 Aligned_cols=151 Identities=28% Similarity=0.430 Sum_probs=142.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+|||+ ++++|++||+++|++|+.|++++|++++|..++.+++++|++++++||.++||||++
T Consensus 105 v~G~a~GgG~eLal~~D~ria~-~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (257)
T COG1024 105 VNGYALGGGLELALACDIRIAA-EDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEV 183 (257)
T ss_pred EcceEeechhhhhhcCCeEEec-CCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCee
Confidence 7999999999999999999999 999999999999999977999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
+++.+++++.+.+++++++. +|.++..+|+.++......+++....+...+...+.+++.+|++.+|++ |++
T Consensus 184 v~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 184 VPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred eCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 99558999999999999999 9999999999999987766888888888888888899999999999999 765
No 64
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=6.7e-35 Score=238.75 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=146.1
Q ss_pred CCcccchHH-HHHHhhcceeee-------ecCceeeecccccccccCChhHHHHHHHhh-CHHHH--HHHHhcCCCCCHH
Q psy15240 1 MKGHAPGAG-CQFAMSCEYRIM-------VGPKYTIGLNETKMGIIAPFWFVDTMVHTL-GPRQT--ELALTSGKMFTSA 69 (155)
Q Consensus 1 v~G~a~GgG-~~la~~cD~~ia-------~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~ 69 (155)
=||+|+||| ++|+++||+||+ + ++++|++||+++|++|+++++++|++++ |.+++ ++++++|++++++
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~-~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~ 451 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNND-PEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAE 451 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCC-CCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHH
Confidence 079999999 999999999999 8 9999999999999999999999999998 99988 5599999999999
Q ss_pred HHHHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHH---HH
Q psy15240 70 EALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQK---GL 145 (155)
Q Consensus 70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---~~ 145 (155)
||+++||||+|++ ++++++.+.+++++|++.+|.+++.+|+.++.....+++.. +..|...+..++.++|.++ ++
T Consensus 452 eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~ 530 (546)
T TIGR03222 452 EAERLGLVTAAPD-DIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGAL 530 (546)
T ss_pred HHHHcCCcccccC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHH
Confidence 9999999999999 89999999999999999999999999999999988889999 9999999999999999999 99
Q ss_pred HHHHhhccCC
Q psy15240 146 GLYLQSLKKK 155 (155)
Q Consensus 146 ~~~~~~~~~k 155 (155)
++|++||+|+
T Consensus 531 ~af~ekr~p~ 540 (546)
T TIGR03222 531 KVYGSGKKAQ 540 (546)
T ss_pred HHHccCCCCC
Confidence 9999999874
No 65
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.1e-35 Score=229.74 Aligned_cols=151 Identities=20% Similarity=0.226 Sum_probs=142.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|+++.| ..+++++++|++++++||+++||||++
T Consensus 107 VnG~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~v 184 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSHRIVT-ERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHF 184 (342)
T ss_pred EcCEEEccHhHHhhhCCEEEEc-CCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCccee
Confidence 7999999999999999999999 99999999999999999999999999877 689999999999999999999999999
Q ss_pred cCChhHHHHH--------------------------------------------------------------HHHHHHHH
Q psy15240 81 VTSEEEAITR--------------------------------------------------------------AETFLAQY 98 (155)
Q Consensus 81 ~~~~~~~~~~--------------------------------------------------------------~~~~a~~l 98 (155)
++ ++++.+. +.+++++|
T Consensus 185 v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i 263 (342)
T PRK05617 185 VP-SADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTL 263 (342)
T ss_pred cC-HHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHH
Confidence 99 8888876 88999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hh-ccC
Q psy15240 99 ATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL-QS-LKK 154 (155)
Q Consensus 99 ~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 154 (155)
++.+|.+++.+|++++.....++++.++.|...+..++.++|.++++++|+ +| |+|
T Consensus 264 ~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 264 RSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 999999999999999988777899999999999999999999999999996 65 655
No 66
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.4e-34 Score=236.06 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=146.3
Q ss_pred CC-cccchHH-HHHHhhcceeeeec------CceeeecccccccccCChhHHHHHHHh-hCHHHHHHH--HhcCCCCCHH
Q psy15240 1 MK-GHAPGAG-CQFAMSCEYRIMVG------PKYTIGLNETKMGIIAPFWFVDTMVHT-LGPRQTELA--LTSGKMFTSA 69 (155)
Q Consensus 1 v~-G~a~GgG-~~la~~cD~~ia~~------~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~ 69 (155)
|| |+|+||| ++|+++||+||++. ++++|++||+++|++|+++++++|+++ +|.++|+++ +++|++++++
T Consensus 376 V~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~ 455 (550)
T PRK08184 376 IEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDAD 455 (550)
T ss_pred ECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHH
Confidence 55 9999999 99999999999992 789999999999999999999999998 699999997 5899999999
Q ss_pred HHHHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHH---HH
Q psy15240 70 EALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQK---GL 145 (155)
Q Consensus 70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---~~ 145 (155)
||+++||||+|+| ++++++++.++++++++.||.+++.+|+.++.....++++. +..|...+..++.++|.++ ++
T Consensus 456 eA~~~GLv~~vv~-~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~ 534 (550)
T PRK08184 456 AAEELGLVTAAPD-DIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGAL 534 (550)
T ss_pred HHHHcCCcccccC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHH
Confidence 9999999999999 89999999999999999999999999999999988899999 9999999999999999999 99
Q ss_pred HHHHhhccCC
Q psy15240 146 GLYLQSLKKK 155 (155)
Q Consensus 146 ~~~~~~~~~k 155 (155)
++|++||+|+
T Consensus 535 ~af~ekr~~~ 544 (550)
T PRK08184 535 KVYGTGQKAQ 544 (550)
T ss_pred HHhccCCCCC
Confidence 9999999874
No 67
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2e-33 Score=222.69 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=138.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|. .+++|+++|++++++||+++||||+|
T Consensus 112 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~v 189 (379)
T PLN02874 112 VHGLVMGGGAGLMVPMKFRVVT-EKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHF 189 (379)
T ss_pred ecCeEEecHHHHHHhCCeEEEe-CCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEE
Confidence 7999999999999999999999 999999999999999999999999999885 88999999999999999999999999
Q ss_pred cCChhHHHH---H----------------------------------------------------------------HHH
Q psy15240 81 VTSEEEAIT---R----------------------------------------------------------------AET 93 (155)
Q Consensus 81 ~~~~~~~~~---~----------------------------------------------------------------~~~ 93 (155)
|+ .+++.+ + +.+
T Consensus 190 v~-~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~ 268 (379)
T PLN02874 190 VP-SEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKE 268 (379)
T ss_pred eC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHH
Confidence 99 777765 3 237
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH-hh-ccCC
Q psy15240 94 FLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYL-QS-LKKK 155 (155)
Q Consensus 94 ~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~-~~-~~~k 155 (155)
+++.|++.+|.+++.+|++++.....++++.++.|.......+. ++|++|++++|+ +| |+|+
T Consensus 269 ~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~ 335 (379)
T PLN02874 269 TLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPK 335 (379)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCC
Confidence 88999999999999999999988777899999998888777777 899999999997 66 6664
No 68
>KOG0016|consensus
Probab=100.00 E-value=1.2e-32 Score=202.59 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=148.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||||+|.|..+...||+|||+ ++++|..|+.++|..|++++++++|+++|...|.++++.|++++|+||.+.|||++|
T Consensus 114 vNGPAIGlgasil~lcD~V~A~-Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVski 192 (266)
T KOG0016|consen 114 VNGPAIGLGASILPLCDYVWAS-DKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKI 192 (266)
T ss_pred ecCCccchhhHHhhhhheEEec-cceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhh
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
++ .+.+.+.+...++++++.+|.+++.+|+++|......+..+.+.|+......|.++|..+++.+|+.+..+
T Consensus 193 f~-~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~~k 265 (266)
T KOG0016|consen 193 FP-AETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKKRK 265 (266)
T ss_pred cC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccccc
Confidence 99 89999999999999999999999999999999988999999999999999999999999999999988654
No 69
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.5e-32 Score=207.29 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=127.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||.++||||++
T Consensus 128 V~G~a~GgG~~LalacD~ria~-~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~v 206 (287)
T PRK08788 128 VQGDALGGGFEAALSHHTIIAE-RGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL 206 (287)
T ss_pred ECCeeehHHHHHHHhCCEEEec-CCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS-PQVQKGLGLYLQ 150 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~ 150 (155)
+| .+++.+.+.+++++|+.. |.+...+|+..+.....++++.++.+...+..++.. ..-++.|+.|..
T Consensus 207 v~-~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 207 VE-DGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred cC-chHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 99 799999999999999987 666677777766665556777777776666654433 334556666654
No 70
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=6.5e-32 Score=201.42 Aligned_cols=129 Identities=29% Similarity=0.447 Sum_probs=121.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++|||||++ ++ ++|++||+++|++|+.++..++++++|...+++++++|++++++||+++||||+
T Consensus 98 v~G~a~GgG~~lal~~D~rva~-~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~ 176 (229)
T PRK06213 98 CTGHAIAKGAFLLLSADYRIGV-HGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDE 176 (229)
T ss_pred EcCeeeHHHHHHHHhCCeeeEe-cCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCcee
Confidence 6999999999999999999999 88 999999999999988888888999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKN 131 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~ 131 (155)
|++ ++++.+.+.+++++++..++.++..+|+.++.....++.+.++.|...
T Consensus 177 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~ 227 (229)
T PRK06213 177 VVP-PEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAE 227 (229)
T ss_pred ccC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 999 899999999999999999999999999999998877888888777654
No 71
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.98 E-value=9.4e-32 Score=227.54 Aligned_cols=151 Identities=26% Similarity=0.337 Sum_probs=138.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus 109 v~G~a~GgG~~LAlacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~v 187 (715)
T PRK11730 109 INGYALGGGCECVLATDYRVAS-PDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAV 187 (715)
T ss_pred ECCEeehHHHHHHHhCCEEEEc-CCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcC------------ChH---------HHHHHHH------------------HHHHHHHHhH
Q psy15240 81 VTSEEEAITRAETFLAQYATI------------PGA---------ARKLTKL------------------MLREKTISNL 121 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~------------~~~---------a~~~~K~------------------~l~~~~~~~~ 121 (155)
++ .+++.+.+.+++++++.. +|. +++.+|+ .++.....++
T Consensus 188 v~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~~~~~ 266 (715)
T PRK11730 188 VA-PEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGR 266 (715)
T ss_pred cC-HHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHhcCCH
Confidence 99 899999999999999965 344 4466774 4566666678
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240 122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
++.++.|...+..++.+++.++++.+|++++.
T Consensus 267 ~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~ 298 (715)
T PRK11730 267 DEALELEAKGFVKLAKTNVARALVGIFLNDQY 298 (715)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.98 E-value=1e-31 Score=199.42 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=111.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.+|++++|..++++++++|++++++||+++||||++
T Consensus 106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v 184 (222)
T PRK05869 106 ITGYALGAGLTLALAADWRVSG-DNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEM 184 (222)
T ss_pred EcCEeecHHHHHHHhCCEEEec-CCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEe
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT 117 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 117 (155)
++ .+++.+++.+++++++..||.+++.+|+.++...
T Consensus 185 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 185 VA-PDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred eC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99 8999999999999999999999999999998764
No 73
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.97 E-value=2.7e-31 Score=224.64 Aligned_cols=150 Identities=18% Similarity=0.300 Sum_probs=139.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID 78 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~ 78 (155)
|||+|+|||++|+++|||||++ ++ ++|++||+++|++|+++++++|++++|..+|++|+++|++++++||+++||||
T Consensus 108 V~G~a~GgG~~LalacD~ria~-~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~ 186 (708)
T PRK11154 108 IHGACLGGGLELALACHYRVCT-DDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 186 (708)
T ss_pred ECCeeechHHHHHHhCCEEEEe-CCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCc
Confidence 7999999999999999999999 76 59999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHHHH-------------HhcCChH----------------------HHHHHHHHHHHHHHHhHHH
Q psy15240 79 EEVTSEEEAITRAETFLAQ-------------YATIPGA----------------------ARKLTKLMLREKTISNLME 123 (155)
Q Consensus 79 ~v~~~~~~~~~~~~~~a~~-------------l~~~~~~----------------------a~~~~K~~l~~~~~~~~~~ 123 (155)
++++ .+++.+.+.+++++ +++.+|. ++..+|++++.....++++
T Consensus 187 ~vv~-~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~ 265 (708)
T PRK11154 187 DVVP-HSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSS 265 (708)
T ss_pred EecC-hHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHH
Confidence 9999 89999999999988 4555553 7889999999988778999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240 124 NKEKDLKNVVDLITSPQVQKGLGLYLQSL 152 (155)
Q Consensus 124 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
.++.|...+..++.+++.++++.+|+..+
T Consensus 266 ~l~~E~~~~~~~~~s~~~~~~~~aF~~~~ 294 (708)
T PRK11154 266 GYEAEARAFGELAMTPESAALRSIFFATT 294 (708)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 74
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=5.1e-31 Score=202.45 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=125.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++ + .+..++++++|+.++++++++|++++++||+++||||+|
T Consensus 125 VnG~a~GgG~~lalacD~ria~-e~a~f~~pe~~lGl~-~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~v 201 (288)
T PRK08290 125 VQGACIAGGLMLAWVCDLIVAS-DDAFFSDPVVRMGIP-G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRV 201 (288)
T ss_pred ECCEeeHHHHHHHHhCCEEEee-CCCEecCcccccCcC-c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence 7999999999999999999999 999999999999994 4 446778999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHh-cCHH
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMENKEKDLKNVVDLI-TSPQ 140 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~-~~~~ 140 (155)
++ .+++++.+.+++++|+..|+.+++.+|+.++..... .+++.+..|.......+ .+|+
T Consensus 202 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 202 VP-RDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 99 899999999999999999999999999999988764 68888888888888888 6676
No 75
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.97 E-value=1.5e-30 Score=219.86 Aligned_cols=150 Identities=16% Similarity=0.297 Sum_probs=136.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID 78 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~ 78 (155)
|||+|+|||++|+++|||||++ ++ ++|++||+++|++|+++++++|++++|..++++++++|+++++++|+++||||
T Consensus 103 VnG~a~GgG~~LaLacD~ria~-~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~ 181 (699)
T TIGR02440 103 IHGACLGGGLELALACHSRVCS-DDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181 (699)
T ss_pred ECCEeecHHHHHHHhCCEEEEc-CCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCc
Confidence 7999999999999999999999 65 79999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHHH-------------HHhcCChHH----------------------HHHHHHHHHHHHHHhHHH
Q psy15240 79 EEVTSEEEAITRAETFLA-------------QYATIPGAA----------------------RKLTKLMLREKTISNLME 123 (155)
Q Consensus 79 ~v~~~~~~~~~~~~~~a~-------------~l~~~~~~a----------------------~~~~K~~l~~~~~~~~~~ 123 (155)
+|++ ++++++.+.++++ .++..+|.+ ...+|+.++.....++++
T Consensus 182 ~vv~-~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~ 260 (699)
T TIGR02440 182 DVVP-QSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQK 260 (699)
T ss_pred EecC-hhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHH
Confidence 9999 8999999999998 566666555 445566688877778999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240 124 NKEKDLKNVVDLITSPQVQKGLGLYLQSL 152 (155)
Q Consensus 124 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
.++.|.+.+..++.+++.++.+.+|+..+
T Consensus 261 ~l~~E~~~~~~~~~s~~~~~~~~~f~~~~ 289 (699)
T TIGR02440 261 GLDAEARAFGELVMTPESAALRSIFFATT 289 (699)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 76
>KOG1679|consensus
Probab=99.97 E-value=6.7e-32 Score=194.12 Aligned_cols=153 Identities=21% Similarity=0.312 Sum_probs=145.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|+|.|.|||++|+++||+|+|+ +++.|+++|.++++.|+.|++++||+.+|.+.++++++|++.+++.||...||||.+
T Consensus 131 idG~ALGGGLElALACDiRva~-s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhv 209 (291)
T KOG1679|consen 131 IDGAALGGGLELALACDIRVAA-SSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHV 209 (291)
T ss_pred hcchhcccchhhhhhccceehh-hhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHH
Confidence 6899999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEE----EAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~----~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|+ .. ...+++.++++++....|.++++.|..++...+.++...+..|..-....+.+.|..+++.+|.+||+|+
T Consensus 210 v~-qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~ 287 (291)
T KOG1679|consen 210 VE-QNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPE 287 (291)
T ss_pred Hh-cCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Confidence 98 54 7778899999999999999999999999999999999999988888888899999999999999999874
No 77
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.97 E-value=2.4e-30 Score=205.53 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=129.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++||||++
T Consensus 140 v~G~a~GGG~~Lal~cD~rvat-e~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~v 217 (401)
T PLN02157 140 LNGVTMGGGTGVSIPGTFRVAT-DRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHY 217 (401)
T ss_pred EeCeEeehhHHHHHhCCEEEEe-CCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEE
Confidence 6999999999999999999999 999999999999999999999999999996 79999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLY 148 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 148 (155)
|| .+++ +.+.+++.+++..+|.++..+|+.++... ......+..+......++.+++.++.+.+|
T Consensus 218 Vp-~~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~~d~~ei~~al 282 (401)
T PLN02157 218 IR-SEEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSHDTVEEIIDSL 282 (401)
T ss_pred eC-HhHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99 7888 57779999999999999999999997652 234455666677788889999999999998
No 78
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1e-29 Score=196.48 Aligned_cols=113 Identities=25% Similarity=0.361 Sum_probs=105.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|..|+. ..+++++|+++|++++++|++++++||+++||||++
T Consensus 134 V~G~a~GgG~~lalacD~~ias-~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~v 209 (302)
T PRK08272 134 VHGYCVAGGTDIALHCDQVIAA-DDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEA 209 (302)
T ss_pred EccEeehhhHHHHHhCCEEEEe-CCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCcee
Confidence 7999999999999999999999 999999999998655543 357889999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 118 (155)
+| .+++++.+.+++++|+..||.++..+|+.++..+.
T Consensus 210 v~-~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 210 VP-PEELDERTERLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99 89999999999999999999999999999998765
No 79
>KOG1681|consensus
Probab=99.97 E-value=1.3e-30 Score=188.83 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhC-HHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||+.|.-+||+|||+ +++.|+..|+.+|+..+.|...+||..+| .+.++++.+|++.|++.||++.|||++
T Consensus 133 vHg~CiGagvDLiTAcDIRycs-qDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSr 211 (292)
T KOG1681|consen 133 VHGACIGAGVDLITACDIRYCS-QDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSR 211 (292)
T ss_pred HHhhhccccccceeecceeeec-ccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchh
Confidence 6999999999999999999999 99999999999999999999999999999 699999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
|++|.++++..+...|..|+.++|.++..+|..|+...+.+.++.+.+-..+...++.+.|..+...+-+.|+|+
T Consensus 212 vf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~ 286 (292)
T KOG1681|consen 212 VFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKT 286 (292)
T ss_pred hcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887664
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.96 E-value=2.9e-29 Score=195.11 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus 131 VnG~AiGGGleLALaCDlrIAs-e~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~V 209 (360)
T TIGR03200 131 VNGMRIGGGQEIGMAADFTIAQ-DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDV 209 (360)
T ss_pred ECCEeeeHHHHHHHhCCEEEEc-CCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhee
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHH------------HHHHHHHHHHHhcCChH--HHHHHHHHHHH
Q psy15240 81 VTSEEEA------------ITRAETFLAQYATIPGA--ARKLTKLMLRE 115 (155)
Q Consensus 81 ~~~~~~~------------~~~~~~~a~~l~~~~~~--a~~~~K~~l~~ 115 (155)
+| .+++ ++.+.++.+.+...++. ++...|.+++.
T Consensus 210 Vp-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 210 VP-ALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred cC-chhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 99 6776 55555555555554444 55555555554
No 81
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.96 E-value=1.3e-28 Score=184.73 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=106.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHH-HHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|||+|+|||++|+++||+||+++++++|++||.++|+++|.+++.++++++|..++ ++++++|++++++||+++||||+
T Consensus 101 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~ 180 (239)
T PLN02267 101 VTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDS 180 (239)
T ss_pred ECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcce
Confidence 79999999999999999999983467999999999997555568899999999999 69999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHH
Q psy15240 80 EVTSEEEAITRAETFLAQYATI--PGAARKLTKLMLREKTI 118 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~--~~~a~~~~K~~l~~~~~ 118 (155)
++++.+++.+.+.++++++++. ++.++..+|+.++....
T Consensus 181 vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~ 221 (239)
T PLN02267 181 AHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVC 221 (239)
T ss_pred ecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHH
Confidence 9984578999999999999987 66789999999987754
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.95 E-value=8.4e-28 Score=203.33 Aligned_cols=151 Identities=25% Similarity=0.318 Sum_probs=128.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..+|++++++|+++++++|+++||||++
T Consensus 109 i~G~alGGGleLalacD~ria~-~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~v 187 (714)
T TIGR02437 109 INGIALGGGCECVLATDFRIAD-DTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAV 187 (714)
T ss_pred ECCeeecHHHHHHHhCCEEEEe-CCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEe
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCC--------h-----------HH--HHHH------------------HHHHHHHHHHhH
Q psy15240 81 VTSEEEAITRAETFLAQYATIP--------G-----------AA--RKLT------------------KLMLREKTISNL 121 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~--------~-----------~a--~~~~------------------K~~l~~~~~~~~ 121 (155)
++ .+++.+.+.++++++.... + .. .... -+.++.....++
T Consensus 188 v~-~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~ 266 (714)
T TIGR02437 188 VT-ADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGR 266 (714)
T ss_pred eC-hhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCH
Confidence 99 8999999999997744320 0 00 1111 112233333467
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240 122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
++.+..|.+.+.+++.+++.+..+..|+.++.
T Consensus 267 ~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 267 DKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 89999999999999999999999999987543
No 83
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.95 E-value=5.5e-27 Score=198.85 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=125.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID 78 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~ 78 (155)
|||+|+|||++|+++|||||++ ++ ++|++||+++|+.|++|++++||+++|..+|++++++|+++++++|+++||||
T Consensus 115 v~G~a~GgG~eLALacD~ria~-~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd 193 (737)
T TIGR02441 115 ISGSCLGGGLELALACHYRIAT-KDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVD 193 (737)
T ss_pred ECCEeecHHHHHHHhCCEEEEc-CCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCe
Confidence 7999999999999999999999 76 58999999999999999999999999999999999999999999999999999
Q ss_pred eecCCh-------------hHHHHHHHHHHHHHhcCC----------hH-------------------------------
Q psy15240 79 EEVTSE-------------EEAITRAETFLAQYATIP----------GA------------------------------- 104 (155)
Q Consensus 79 ~v~~~~-------------~~~~~~~~~~a~~l~~~~----------~~------------------------------- 104 (155)
+|++ + +++.+.+.+++..++..+ +.
T Consensus 194 ~vv~-~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (737)
T TIGR02441 194 QLVD-PLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLY 272 (737)
T ss_pred EecC-CcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhHHHHHHHHHHHHHHhccCCC
Confidence 9999 4 668888888887764311 00
Q ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 105 -ARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 105 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
+...+-+.+......++++.+..|.+.+.+++.+++.+.-+..|+..
T Consensus 273 ~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 273 PAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 01122223334434468899999999999999999999998888754
No 84
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.95 E-value=6.5e-27 Score=185.25 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=121.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+.|++++|++++|. .+++|+++|+++++++|+++||||++
T Consensus 112 v~G~a~GGG~~Lal~~D~rvat-e~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~v 189 (381)
T PLN02988 112 LNGIVMGGGAGVSVHGRFRIAT-ENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHF 189 (381)
T ss_pred ecCeEeehhhHHhhcCCeEEEc-CCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEe
Confidence 6999999999999999999999 999999999999999999999999999997 58899999999999999999999999
Q ss_pred cCChhHHHHHHHHHHH----------------------------------------------------------------
Q psy15240 81 VTSEEEAITRAETFLA---------------------------------------------------------------- 96 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~---------------------------------------------------------------- 96 (155)
|+ .+++.+.+.++++
T Consensus 190 v~-~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~ 268 (381)
T PLN02988 190 VP-STRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALEREATQEADGWISA 268 (381)
T ss_pred cC-HhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHH
Confidence 99 6766665544431
Q ss_pred ---HHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHh
Q psy15240 97 ---QYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYLQ 150 (155)
Q Consensus 97 ---~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~ 150 (155)
.|.+.+|.++..+.+++++....++.+++..|......++. ++|+.||+++-+-
T Consensus 269 ~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li 328 (381)
T PLN02988 269 TIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILV 328 (381)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhc
Confidence 12223355566666666666556777888888888888776 5889999988764
No 85
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.93 E-value=4.1e-25 Score=175.77 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=123.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|||++|+++||+||++ ++++|++||+++|++|+.|++++|+++.|.. ++++++||+++++++|.++||+|++
T Consensus 145 v~G~amGGG~gLal~~D~rVat-e~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~ 222 (407)
T PLN02851 145 MDGITMGCGAGISIPGMFRVVT-DKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHY 222 (407)
T ss_pred EcCEEeeHHHHHHHhCCEEEEe-CCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceee
Confidence 6999999999999999999999 9999999999999999999999999999985 8999999999999999999999999
Q ss_pred cCChhHHHHHHHH----------------------------------------------------------------HH-
Q psy15240 81 VTSEEEAITRAET----------------------------------------------------------------FL- 95 (155)
Q Consensus 81 ~~~~~~~~~~~~~----------------------------------------------------------------~a- 95 (155)
++ .+++. .+.+ |+
T Consensus 223 v~-~~~l~-~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~~~~~~~~wa~ 300 (407)
T PLN02851 223 CL-NARLP-LIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCK 300 (407)
T ss_pred cC-HhhHH-HHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhcccccchHHHH
Confidence 98 44331 1111 11
Q ss_pred ---HHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHh
Q psy15240 96 ---AQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLI---TSPQVQKGLGLYLQ 150 (155)
Q Consensus 96 ---~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~ 150 (155)
+.|.+.+|.++..+-++++.....++.++++.|......++ .++|+.||+++.+-
T Consensus 301 ~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI 361 (407)
T PLN02851 301 KALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV 361 (407)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence 12334456678888888888777789999999999888877 48999999999865
No 86
>KOG1682|consensus
Probab=99.93 E-value=2.3e-25 Score=159.42 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=142.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||.|..+||+|...||++||+ .++.|..|...+|++-...+ .-|.|.++...+.+|++||+|++++||+..|||+++
T Consensus 132 VNG~AaAAGcQLVaSCD~vVa~-k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskv 209 (287)
T KOG1682|consen 132 VNGYAAAAGCQLVASCDMVVAT-KNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPITGEEALISGLVSKV 209 (287)
T ss_pred ecchhhhccceEEEeeeEEEEe-cCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhc
Confidence 7999999999999999999999 99999999999999865554 358899999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|| .++++.+++++++.|-..+...+..-|+..+.....+-.+++.+..+.+...+.-.|.+|++.+|++||.+.
T Consensus 210 Vp-~~el~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 210 VP-AEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred CC-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 99 899999999999999999999999999999998888888899999999999999999999999999999863
No 87
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.92 E-value=4.8e-26 Score=164.10 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=133.8
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|+|+++|||-.|-+.||+-|++ +++.|+....++|-+-++.++..|.+++|..+|+++-+.++.++|+||+++|+||.|
T Consensus 123 V~G~AiGGGhvlhvvCDLTiAa-~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~V 201 (282)
T COG0447 123 VAGYAIGGGHVLHVVCDLTIAA-DNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTV 201 (282)
T ss_pred EeeEeccCccEEEEEeeeeeeh-hcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeee
Confidence 6899999999999999999999 999999999999998888889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240 81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 155 (155)
|| .++|+++..+|++++.+.+|.+++..|..++...+. +.-..+..-....-...+++.+|+..+|++||+|.
T Consensus 202 vp-~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DG-laG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd 274 (282)
T COG0447 202 VP-HADLEKETVQWAREMLAKSPTALRMLKAAFNADCDG-LAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD 274 (282)
T ss_pred cc-HHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCch-hhHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence 99 999999999999999999999999999999887652 22111111222223347899999999999999873
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.91 E-value=9.4e-25 Score=179.17 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=96.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCc--eeeeccccc-ccccCChhHHHHHH--HhhCHHHHHHHHhcCCCCCHHHHHHcC
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETK-MGIIAPFWFVDTMV--HTLGPRQTELALTSGKMFTSAEALKVG 75 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~-~Gl~~~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~eA~~~G 75 (155)
|||+|+|||++|+++||+||++ ++ ++|++||++ +|++|+++++.+++ +++|..+|++|+++|++++++||++||
T Consensus 126 VnG~a~GGG~~LALacD~rvAs-~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~G 204 (546)
T TIGR03222 126 VNGTCAGGGYELALACDEIMLV-DDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWR 204 (546)
T ss_pred ECCEeehHHHHHHHhCCEEEEe-cCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcC
Confidence 7999999999999999999999 75 799999997 99999999988887 799999999999999999999999999
Q ss_pred ccceecCChhHHHHHHHHHHHHHhcCCh
Q psy15240 76 LIDEEVTSEEEAITRAETFLAQYATIPG 103 (155)
Q Consensus 76 lv~~v~~~~~~~~~~~~~~a~~l~~~~~ 103 (155)
|||+|++ .+++++.+.+++++|+..||
T Consensus 205 LV~~vv~-~~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 205 LVDEVVK-PSQFDAAIAERAAELAAQSD 231 (546)
T ss_pred CceEEeC-hHHHHHHHHHHHHHHHhCCC
Confidence 9999999 89999999999999999876
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.91 E-value=1.6e-24 Score=178.17 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=96.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCc--eeeeccccc-ccccCChhHHHHHH--HhhCHHHHHHHHhcCCCCCHHHHHHcC
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETK-MGIIAPFWFVDTMV--HTLGPRQTELALTSGKMFTSAEALKVG 75 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~-~Gl~~~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~eA~~~G 75 (155)
|||+|+|||++|+++|||||++ ++ ++|++||++ +|++|+++++++++ +++|..++++++++|++++++||+++|
T Consensus 130 VnG~a~GGG~~LALacD~rIas-~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~G 208 (550)
T PRK08184 130 VNGTCAGGGYELALACDEIVLV-DDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWR 208 (550)
T ss_pred ECCEeehHHHHHHHhCCEEEEe-cCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcC
Confidence 7999999999999999999999 76 899999997 99999999999988 779999999999999999999999999
Q ss_pred ccceecCChhHHHHHHHHHHHHHhcCChH
Q psy15240 76 LIDEEVTSEEEAITRAETFLAQYATIPGA 104 (155)
Q Consensus 76 lv~~v~~~~~~~~~~~~~~a~~l~~~~~~ 104 (155)
|||++++ ++++.+.+.+++++|+..+|.
T Consensus 209 LVd~vv~-~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 209 LVDEVVK-PSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CccEeeC-HHHHHHHHHHHHHHHHhCCCC
Confidence 9999999 899999999999999998754
No 90
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.90 E-value=7.6e-24 Score=153.92 Aligned_cols=95 Identities=29% Similarity=0.516 Sum_probs=91.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|||+|+|+|++++++||+||++ ++++|++||.++|+.|+.+++.+|++++|.+.+.+++++|++++++||.++||||++
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~-~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~ 178 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAA-EDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEV 178 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEec-CCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 6999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q psy15240 81 VTSEEEAITRAETFLAQ 97 (155)
Q Consensus 81 ~~~~~~~~~~~~~~a~~ 97 (155)
++ .+++.+.+.+++++
T Consensus 179 ~~-~~~l~~~a~~~a~~ 194 (195)
T cd06558 179 VP-DEELLAAALELARR 194 (195)
T ss_pred cC-hhHHHHHHHHHHhh
Confidence 99 69999999888775
No 91
>KOG1684|consensus
Probab=99.71 E-value=2.3e-17 Score=126.95 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=127.9
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
+||..+|||++|...--||||+ ++..|.+||..+|++|+.|++++|++.-| ....++-+||+++++.|+...||.+..
T Consensus 142 mdGITMGgG~GLS~hg~fRVAT-erT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHy 219 (401)
T KOG1684|consen 142 MDGITMGGGVGLSVHGRFRVAT-ERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHY 219 (401)
T ss_pred eeceeecCCcceeecceeEEee-ccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhc
Confidence 5899999999999999999999 99999999999999999999999999988 677889999999999999999999988
Q ss_pred cCChhHHHHHHH--------------------------------------------------------------------
Q psy15240 81 VTSEEEAITRAE-------------------------------------------------------------------- 92 (155)
Q Consensus 81 ~~~~~~~~~~~~-------------------------------------------------------------------- 92 (155)
|+ .+.+..-=+
T Consensus 220 v~-S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewa 298 (401)
T KOG1684|consen 220 VP-SEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWA 298 (401)
T ss_pred cc-hhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHH
Confidence 77 332221111
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 93 -TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 93 -~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
+.++.|-.++|.++..+-++++.....++++++-.|.+...++..++|+.|++++-+-.
T Consensus 299 k~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LID 358 (401)
T KOG1684|consen 299 KETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLID 358 (401)
T ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeec
Confidence 11224556678899999999999999999999999999999999999999999997643
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.70 E-value=4.2e-17 Score=118.24 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=74.7
Q ss_pred cccchHHHHHHhhcceeeeecCceeeecccccccccCCh--------------hHHHHHHHhhCH--HHHHHHHhcCCCC
Q psy15240 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--------------WFVDTMVHTLGP--RQTELALTSGKMF 66 (155)
Q Consensus 3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~ 66 (155)
|+|+|||+.|+++||++|++ ++++|+.++...+..++. .....++++.|. ..+++++++|+.+
T Consensus 70 G~AasgG~~iala~D~iva~-p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~ 148 (187)
T cd07020 70 ARAASAGTYILLAAHIAAMA-PGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSL 148 (187)
T ss_pred CCchhHHHHHHHhCCceeEC-CCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCee
Confidence 99999999999999999999 999999999985544332 245578899987 6889999999999
Q ss_pred CHHHHHHcCccceecCChhHHHHH
Q psy15240 67 TSAEALKVGLIDEEVTSEEEAITR 90 (155)
Q Consensus 67 ~a~eA~~~Glv~~v~~~~~~~~~~ 90 (155)
+++||+++||||+|+++.+++.+.
T Consensus 149 ~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 149 TAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred cHHHHHHcCCcccccCCHHHHHHH
Confidence 999999999999999954466654
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.51 E-value=2.7e-14 Score=102.62 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHH--------HHHHhhC--HHHHHHHHhcCCCCCHHH
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVD--------TMVHTLG--PRQTELALTSGKMFTSAE 70 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~--------~l~~~~g--~~~a~~l~l~g~~~~a~e 70 (155)
|||.|.|+|+.|+++||++|++ ++++|+++.+..+..+...... .+++..| ....++++..|..+++++
T Consensus 78 v~G~a~g~g~~la~a~D~i~a~-~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~ 156 (177)
T cd07014 78 GGGNAASGGYWISTPANYIVAN-PSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQD 156 (177)
T ss_pred ECCchhHHHHHHHHhCCEEEEC-CCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHH
Confidence 6899999999999999999999 9999999988776443222222 4555556 778899999999999999
Q ss_pred HHHcCccceecCChhHHHHH
Q psy15240 71 ALKVGLIDEEVTSEEEAITR 90 (155)
Q Consensus 71 A~~~Glv~~v~~~~~~~~~~ 90 (155)
|++.||||+|.+ .+++.+.
T Consensus 157 A~~~GLVD~v~~-~~e~~~~ 175 (177)
T cd07014 157 AKANGLVDSLGS-FDDAVAK 175 (177)
T ss_pred HHHcCCcccCCC-HHHHHHH
Confidence 999999999999 7877653
No 94
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.33 E-value=4.1e-12 Score=89.82 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChh---------------HHHHHHHhhC--HHHHHHHHhcC
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLG--PRQTELALTSG 63 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g--~~~a~~l~l~g 63 (155)
|+|.|.++|+.|+++||+|+++ ++++|.++....+..+... ....+.+..| .....+++..+
T Consensus 65 v~g~a~s~g~~ia~a~d~~~~~-~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 143 (160)
T cd07016 65 IDGLAASAASVIAMAGDEVEMP-PNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAE 143 (160)
T ss_pred EcchHHhHHHHHHhcCCeEEEC-CCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 5799999999999999999999 9999999888776654332 2334778888 67778888877
Q ss_pred CCCCHHHHHHcCcccee
Q psy15240 64 KMFTSAEALKVGLIDEE 80 (155)
Q Consensus 64 ~~~~a~eA~~~Glv~~v 80 (155)
..++++||+++||||+|
T Consensus 144 ~~l~a~eA~~~GliD~v 160 (160)
T cd07016 144 TWLTAQEAVELGFADEI 160 (160)
T ss_pred eECcHHHHHHcCCCCcC
Confidence 88999999999999986
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.94 E-value=8.7e-10 Score=92.28 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=76.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceee------eccc------ccccccCChhHHHHHH--------------------
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTI------GLNE------TKMGIIAPFWFVDTMV-------------------- 48 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~------~~~e------~~~Gl~~~~~~~~~l~-------------------- 48 (155)
++|.|.+||.-++++||.+|++ +++.+ +.+. .++|+.+....+..+.
T Consensus 385 ~~g~aaSggY~iA~aaD~I~a~-p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l 463 (584)
T TIGR00705 385 MGAMAASGGYWIASAADYIVAS-PNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSV 463 (584)
T ss_pred ECCccccHHHHHHHhCCEEEEC-CCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999 99877 5552 5788887655443332
Q ss_pred --------HhhCHHH-----HHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC-ChHHHH
Q psy15240 49 --------HTLGPRQ-----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI-PGAARK 107 (155)
Q Consensus 49 --------~~~g~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~-~~~a~~ 107 (155)
..++..+ ..+.+..|+.+++++|+++||||++.. . +.+.+.+++++.. ++.++.
T Consensus 464 ~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~-~----~~Ai~~a~~la~~~~~~~v~ 531 (584)
T TIGR00705 464 EAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG-L----DEAVAKAAKLAHCREQWSVE 531 (584)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC-H----HHHHHHHHHHcCCCCCceEE
Confidence 2555555 677888999999999999999999965 3 4456667777776 444333
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.87 E-value=6.8e-09 Score=73.28 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCCh----------hH---HHHHHHh------hCHHHHHHHHh
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----------WF---VDTMVHT------LGPRQTELALT 61 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~----------~~---~~~l~~~------~g~~~a~~l~l 61 (155)
++|.|.++|+.|+++||.|++. +++.|++.....+..... .. ...+... +......+.+.
T Consensus 64 ~~g~~~s~g~~la~~~d~~~~~-~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~ 142 (161)
T cd00394 64 VGGQAASAGYYIATAANKIVMA-PGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIE 142 (161)
T ss_pred ECChhHHHHHHHHhCCCEEEEC-CCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 5799999999999999999999 999999998876654221 00 0111212 23344677778
Q ss_pred cCCCCCHHHHHHcCcccee
Q psy15240 62 SGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v 80 (155)
.+..++++||+++||||+|
T Consensus 143 ~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 143 KDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCcEEcHHHHHHcCCcCcC
Confidence 8999999999999999985
No 97
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.80 E-value=1.3e-08 Score=73.18 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=63.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCCh-------hH---HHHHHHhhC--HHHHHHHHhcC-----
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WF---VDTMVHTLG--PRQTELALTSG----- 63 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~-------~~---~~~l~~~~g--~~~a~~l~l~g----- 63 (155)
|+|.|.++|+.|+++||+++++ +++.|+.+..-.+...+. .. ...+.++-| ...+..|+-..
T Consensus 65 V~g~AaSaG~~ia~a~d~i~m~-p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~ 143 (178)
T cd07021 65 VNDRAASAGALIALAADEIYMA-PGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPG 143 (178)
T ss_pred ECCchHHHHHHHHHhCCeEEEC-CCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhccccc
Confidence 6899999999999999999999 999999986553321100 01 111333334 34556665543
Q ss_pred --------CCCCHHHHHHcCccceecCChhHHHH
Q psy15240 64 --------KMFTSAEALKVGLIDEEVTSEEEAIT 89 (155)
Q Consensus 64 --------~~~~a~eA~~~Glv~~v~~~~~~~~~ 89 (155)
-.+|++||++.|++|.+.+|.+++..
T Consensus 144 ~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 144 VGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred ccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence 26999999999999999998777754
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.65 E-value=8.2e-08 Score=71.01 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=56.7
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeeccccc------------ccccCCh------------------hHHHHHHH-
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGIIAPF------------------WFVDTMVH- 49 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~~~~------------------~~~~~l~~- 49 (155)
|+|.|.|+|+.|+++||++|++ +++.|+..-+. +|+-+.. .--..+..
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~-~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~ 158 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVT-PTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAE 158 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEc-CCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHH
Confidence 5899999999999999999999 99987544322 2221100 00001111
Q ss_pred ----------------hhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240 50 ----------------TLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT 89 (155)
Q Consensus 50 ----------------~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~ 89 (155)
.+.....++++ |+.+++++|++.||||+|.. .+++.+
T Consensus 159 l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~-~~~~~~ 211 (214)
T cd07022 159 VDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT-LDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC-HHHHHH
Confidence 11223334444 99999999999999999988 676654
No 99
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.62 E-value=8e-08 Score=70.91 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeeccc------------ccccccCC---h-h-------------HHHHHHHh-
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNE------------TKMGIIAP---F-W-------------FVDTMVHT- 50 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e------------~~~Gl~~~---~-~-------------~~~~l~~~- 50 (155)
|+|+|.|+|+.|+++||++|++ +++.|+..- .++|+.+. . + .-..+...
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~-~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~l 155 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVAN-PSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSI 155 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEc-CCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999 998886333 12232110 0 0 00111111
Q ss_pred ----------------hCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240 51 ----------------LGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT 89 (155)
Q Consensus 51 ----------------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~ 89 (155)
+.+. ..+-+..+..+++++|++.||||+|.. .++..+
T Consensus 156 d~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~-~~~~~~ 208 (211)
T cd07019 156 ENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGD-FDDAVA 208 (211)
T ss_pred HHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCC-HHHHHH
Confidence 1122 223355788999999999999999988 666544
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.55 E-value=4e-07 Score=67.03 Aligned_cols=90 Identities=26% Similarity=0.316 Sum_probs=60.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeeccccc------------ccccC------------------ChhHHHHH---
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGIIA------------------PFWFVDTM--- 47 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~~------------------~~~~~~~l--- 47 (155)
++|.|.++|+.|+++||.++++ +++.|+..-+. +|+-+ ....-..+
T Consensus 68 v~g~a~s~g~~la~aaD~i~a~-p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~ 146 (207)
T TIGR00706 68 MGGVAASGGYYIAMAADEIVAN-PGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNL 146 (207)
T ss_pred ECCccchHHHHHHhcCCEEEEC-CCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHH
Confidence 5799999999999999999999 99877653332 23321 00000111
Q ss_pred ------------H--HhhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240 48 ------------V--HTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET 93 (155)
Q Consensus 48 ------------~--~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~ 93 (155)
. |.+......+ ++.++.+++++|++.||||++.. .+++.+...+
T Consensus 147 l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~-~~~~~~~~~~ 204 (207)
T TIGR00706 147 VNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGT-EDDALKWLAE 204 (207)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCC-HHHHHHHHHH
Confidence 1 1122333333 46789999999999999999988 7777665544
No 101
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.53 E-value=2.1e-07 Score=68.52 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccc------------cccccCChh------------------HHHHHHHh
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNET------------KMGIIAPFW------------------FVDTMVHT 50 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~------------~~Gl~~~~~------------------~~~~l~~~ 50 (155)
++|.|.|+|+.|+++||++|++ +++.|+..-+ ++|+-+... ....+...
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~-~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~ 151 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVAN-PTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQAL 151 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEEC-CCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHH
Confidence 5899999999999999999999 9998753321 123222110 01111111
Q ss_pred hC-----------------HHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240 51 LG-----------------PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT 89 (155)
Q Consensus 51 ~g-----------------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~ 89 (155)
+. ... .+-+..|..+++++|++.||||++.. .++..+
T Consensus 152 l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~-~~~~~~ 205 (208)
T cd07023 152 VDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGG-LDDAIA 205 (208)
T ss_pred HHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCC-HHHHHH
Confidence 11 111 23356789999999999999999987 666543
No 102
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.41 E-value=1.4e-06 Score=62.29 Aligned_cols=86 Identities=26% Similarity=0.378 Sum_probs=65.6
Q ss_pred cccchHHHHHHhhcceeeeecCceeeecccccccccC-------Ch----hH---HHHHHHhhC--HHHHHHHHhcCCCC
Q psy15240 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-------PF----WF---VDTMVHTLG--PRQTELALTSGKMF 66 (155)
Q Consensus 3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-------~~----~~---~~~l~~~~g--~~~a~~l~l~g~~~ 66 (155)
|.|..+|.-|+++||.+++. +++.++....-.|..+ +. .. ..-+.+.-| ...+..++.....+
T Consensus 70 ~~AaSag~~I~~a~~~i~m~-p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~l 148 (172)
T cd07015 70 ASAASAGTYIALGSHLIAMA-PGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSL 148 (172)
T ss_pred CeehhHHHHHHHhcCceEEC-CCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCc
Confidence 78999999999999999999 9999999887544322 10 00 111333344 46677888888999
Q ss_pred CHHHHHHcCccceecCChhHHHH
Q psy15240 67 TSAEALKVGLIDEEVTSEEEAIT 89 (155)
Q Consensus 67 ~a~eA~~~Glv~~v~~~~~~~~~ 89 (155)
|++||+++|++|.|++|.+++++
T Consensus 149 ta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 149 TPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred CHHHHHHcCCceeeeCCHHHHhh
Confidence 99999999999999998777654
No 103
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.18 E-value=3e-06 Score=62.13 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH---------------HHHHHHhhCH--HHHHHHHh
Q psy15240 1 MKGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLGP--RQTELALT 61 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g~--~~a~~l~l 61 (155)
+.|.|.+.|..|+++++ .|++. ++++|.+....-|......- ...+..+.|. .....++-
T Consensus 96 ~~G~aaS~a~~I~~ag~~~~r~~~-p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 174 (200)
T PRK00277 96 CIGQAASMGAFLLAAGAKGKRFAL-PNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTD 174 (200)
T ss_pred EEeEeccHHHHHHhcCCCCCEEEc-CCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 46999999999988754 57887 77777776654222110000 1224444443 45566666
Q ss_pred cCCCCCHHHHHHcCccceecCCh
Q psy15240 62 SGKMFTSAEALKVGLIDEEVTSE 84 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v~~~~ 84 (155)
...-++++||+++||||+|+++.
T Consensus 175 ~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 175 RDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred CCccccHHHHHHcCCccEEeecC
Confidence 77889999999999999999843
No 104
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.17 E-value=1.8e-05 Score=60.02 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|-|.|.|||.-....||++++. +++.++. +.|.++.+..+...--...+.+. ..+++.++.+.|+||+|
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~-~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~i 211 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWML-ENTMYAV------LSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKV 211 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEe-cCceEEE------cCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEe
Confidence 3488999988877899999999 8886654 23444433333322111222333 37799999999999999
Q ss_pred cC
Q psy15240 81 VT 82 (155)
Q Consensus 81 ~~ 82 (155)
++
T Consensus 212 i~ 213 (256)
T PRK12319 212 IP 213 (256)
T ss_pred cC
Confidence 98
No 105
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.13 E-value=5.3e-06 Score=61.13 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=62.2
Q ss_pred CCcccchHHHHHHhhcc--eeeeecCceeeecccccc-cccCChh----------------HHHHHHHhhC--HHHHHHH
Q psy15240 1 MKGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKM-GIIAPFW----------------FVDTMVHTLG--PRQTELA 59 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~-Gl~~~~~----------------~~~~l~~~~g--~~~a~~l 59 (155)
+.|.|.+.|.-|+++|| .|++. +++.|.+..... |..-+.. ....+.+.-| .....++
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~-p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFAL-PNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEEC-CCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35889999999999999 59999 999999988753 2110100 0123344444 3555667
Q ss_pred HhcCCCCCHHHHHHcCccceecCChhHH
Q psy15240 60 LTSGKMFTSAEALKVGLIDEEVTSEEEA 87 (155)
Q Consensus 60 ~l~g~~~~a~eA~~~Glv~~v~~~~~~~ 87 (155)
+-.+.-++++||+++||||+|++|.+++
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCchhhc
Confidence 7788899999999999999999966654
No 106
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.12 E-value=9.2e-06 Score=60.41 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=56.3
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccccc------------cccCC---------hh-----------HHHHHHH
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM------------GIIAP---------FW-----------FVDTMVH 49 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~------------Gl~~~---------~~-----------~~~~l~~ 49 (155)
+| |.+||..|+++||.+|++ +++.|+..-+.. |+-+. .+ .-..+..
T Consensus 86 ~~-~~sggy~lasaad~I~a~-p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~ 163 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLN-PSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQA 163 (222)
T ss_pred CC-CCchhhhhhhhCCEEEEC-CCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHH
Confidence 55 788999999999999999 999988853321 22110 00 0000111
Q ss_pred -----------------hhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHH
Q psy15240 50 -----------------TLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91 (155)
Q Consensus 50 -----------------~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~ 91 (155)
.+......+ +..|..+++++|++.||||++.. .+++.+..
T Consensus 164 ~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~-~~e~~~~l 220 (222)
T cd07018 164 LLDSLWDQYLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAY-RDELEARL 220 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCc-HHHHHHHH
Confidence 111222333 34599999999999999999998 78776543
No 107
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.02 E-value=2.5e-05 Score=57.16 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHh
Q psy15240 1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALT 61 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l 61 (155)
|.|.|...|.-|+++||- |++. ++++|-+....-++.....- ...+...-| ......++-
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~-p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~ 166 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSL-PNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD 166 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeEC-CCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence 358899999999999985 8999 99988777654333211110 111222223 234455555
Q ss_pred cCCCCCHHHHHHcCccceecCChhHHHHH
Q psy15240 62 SGKMFTSAEALKVGLIDEEVTSEEEAITR 90 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v~~~~~~~~~~ 90 (155)
...-+|++||+++||||+|+++.+++...
T Consensus 167 ~d~~lta~EA~~yGliD~I~~~~~~l~~~ 195 (197)
T PRK14512 167 RDFWLDSSSAVKYGLVFEVVETRLELEEF 195 (197)
T ss_pred cCcccCHHHHHHcCCccEeecCcHHhHhh
Confidence 66779999999999999999976776543
No 108
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.92 E-value=9.5e-05 Score=57.62 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=50.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|-|.|.|||.-....||++++. ++++++. +.|.++.+..+.. ..+|.++. ..-.+|+++.++.|+||+|
T Consensus 199 ViGeggsGGAlal~~aD~V~m~-e~a~~sV------isPEg~a~Il~~d---~~~a~~aA-~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMML-EYAVYTV------ATPEACAAILWKD---SKKSLDAA-EALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEe-CCeEEEe------cCHHHHHHHHhcc---hhhHHHHH-HHcCCCHHHHHhCCCCeEe
Confidence 3488888886555569999999 9987665 3455555444432 33444443 4568999999999999999
Q ss_pred cC
Q psy15240 81 VT 82 (155)
Q Consensus 81 ~~ 82 (155)
++
T Consensus 268 i~ 269 (322)
T CHL00198 268 IP 269 (322)
T ss_pred cc
Confidence 98
No 109
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.91 E-value=4.5e-05 Score=54.05 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=53.2
Q ss_pred CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChh---------------HHHHHHHhhC--HHHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLG--PRQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g--~~~a~~l~l~ 62 (155)
.|.|.++|.-|+++|| .|++. ++++|.+....-+...... ....+.+.-| .....+++-.
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~-p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 144 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFIL-PNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER 144 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEe-cCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 5889999999999999 69999 8998887654333221110 0112223333 3455566666
Q ss_pred CCCCCHHHHHHcCcccee
Q psy15240 63 GKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v 80 (155)
+.-++++||+++||||+|
T Consensus 145 ~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 145 DTWLSAREAVEYGFADTI 162 (162)
T ss_pred CccccHHHHHHcCCCCcC
Confidence 667799999999999985
No 110
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.85 E-value=0.00011 Score=58.84 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=47.5
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV 81 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 81 (155)
-|.+.+||.-...+||++++. ++++++. +.|+++.+..+....-...|.+ .-.+|++++++.|+||+|+
T Consensus 267 iGeGgSGGAlalg~aD~VlMl-e~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II 335 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMM-ENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV 335 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEe-cCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence 467766665555578999999 8886543 3345555544444333333333 3389999999999999999
Q ss_pred C
Q psy15240 82 T 82 (155)
Q Consensus 82 ~ 82 (155)
+
T Consensus 336 ~ 336 (431)
T PLN03230 336 P 336 (431)
T ss_pred c
Confidence 8
No 111
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.81 E-value=0.00019 Score=55.97 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV 81 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 81 (155)
-|.|.|||.-....||++++. +++.++ +.+|-+.+..+-+. ..++.+..- .-.+|+.++.+.|+||+|+
T Consensus 197 iGeg~sGGAla~~~aD~v~m~-~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II 265 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLML-EYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII 265 (319)
T ss_pred eCCccHHHHHHHhccCeeeee-cCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence 478888887555569999999 888654 33344444443332 233333333 5668999999999999999
Q ss_pred C
Q psy15240 82 T 82 (155)
Q Consensus 82 ~ 82 (155)
+
T Consensus 266 ~ 266 (319)
T PRK05724 266 P 266 (319)
T ss_pred c
Confidence 8
No 112
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.76 E-value=0.00019 Score=55.87 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=46.5
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV 81 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 81 (155)
-|.|.|||.-....||++++. ++++++. +.|.++.+..+... .++.+..- ...+++.++.+.|+||+|+
T Consensus 197 iGeggsGGAla~~~aD~v~m~-~~a~~sV------isPEg~a~Il~kd~---~~a~~aae-~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNML-EYSTYSV------ISPEGCAAILWKDA---SKAPKAAE-AMKITAPDLKELGLIDSII 265 (316)
T ss_pred ecccccHHHhhhccCCEEEEe-cCceEEe------cCHHHHHHHhccch---hhHHHHHH-HccCCHHHHHHCCCCeEec
Confidence 478877777555579999999 8886554 33444444333322 22222222 3677899999999999999
Q ss_pred C
Q psy15240 82 T 82 (155)
Q Consensus 82 ~ 82 (155)
+
T Consensus 266 ~ 266 (316)
T TIGR00513 266 P 266 (316)
T ss_pred c
Confidence 8
No 113
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.76 E-value=0.00018 Score=61.23 Aligned_cols=98 Identities=7% Similarity=0.002 Sum_probs=61.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
|-|.|.|||.-....||++++. ++++++. +.|.++.+..+... .+|.++ -..-.+|+++.+++|+||+|
T Consensus 287 ViGeggSGGAlA~g~aD~VlMl-e~A~~sV------isPEgaAsILwkd~---~~A~eA-Ae~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLML-ENAVFYV------ASPEACAAILWKSA---KAAPKA-AEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEe-cCCeEEe------cCHHHHHHHHhcCc---ccHHHH-HHHcCCCHHHHHhCCCCeee
Confidence 3588988888777789999999 8876543 33444444333322 233333 24568999999999999999
Q ss_pred cCCh--------h----HHHHHHHHHHHHHhcCChHHHHHH
Q psy15240 81 VTSE--------E----EAITRAETFLAQYATIPGAARKLT 109 (155)
Q Consensus 81 ~~~~--------~----~~~~~~~~~a~~l~~~~~~a~~~~ 109 (155)
++-+ + .+...+......|...++..+...
T Consensus 356 IpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~ 396 (762)
T PLN03229 356 IPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKH 396 (762)
T ss_pred ccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9832 1 222333444555556666554443
No 114
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.73 E-value=3.7e-05 Score=54.96 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=57.7
Q ss_pred CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~ 62 (155)
.|.|.++|.-+++++| .|++. +++.|.+.+...+...+.. ....+..+.|. .....++-.
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~-~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~ 153 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYAL-PNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR 153 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEc-cchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence 5889999999999999 79999 9999999987766542210 01122333333 355566667
Q ss_pred CCCCCHHHHHHcCcccee
Q psy15240 63 GKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v 80 (155)
+.-++++||+++||||+|
T Consensus 154 ~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 154 DRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CccccHHHHHHcCCCccC
Confidence 888999999999999986
No 115
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.62 E-value=0.00021 Score=52.43 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=57.3
Q ss_pred CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH----------------HHHHHHhhCH--HHHHHHHh
Q psy15240 2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF----------------VDTMVHTLGP--RQTELALT 61 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~----------------~~~l~~~~g~--~~a~~l~l 61 (155)
-|.|.+.|.-|++++| -|++. ++++|-+.....|..-+... ...+...-|. ....+++-
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~-p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAF-PHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEec-CCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 4788889999999999 59999 99999998876652211110 1223333332 34455556
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q psy15240 62 SGKMFTSAEALKVGLIDEEVTS 83 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v~~~ 83 (155)
...-++++||+++||||+|+++
T Consensus 175 r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeec
Confidence 6677999999999999999873
No 116
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.54 E-value=0.00011 Score=51.58 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=54.4
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeeccccc------------cccc---------CChh---------HHHHHHHhh
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGII---------APFW---------FVDTMVHTL 51 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~---------~~~~---------~~~~l~~~~ 51 (155)
+|.|..++.-|+++||-+|+. +.+.++..-+. +|+- ...+ .-..+...+
T Consensus 14 ~~~~~S~~Y~lAs~ad~I~~~-p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~~~r~~~~~~l 92 (154)
T PF01343_consen 14 EGYAASGAYYLASAADEIYAN-PSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSEEERENLQELL 92 (154)
T ss_dssp EEEEETHHHHHHTTSSEEEE--TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHH
T ss_pred CCcchhHHHHHHHcCCEEEec-CCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCHHHHHHHHHHH
Confidence 456677899999999999999 88877765433 2211 0000 000111111
Q ss_pred -----------------CHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240 52 -----------------GPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF 94 (155)
Q Consensus 52 -----------------g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~ 94 (155)
.... .+-+..|..+++++|++.||||++.. .+++.+.+.+.
T Consensus 93 ~~~~~~f~~~Va~~R~~~~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~-~~~~~~~l~~~ 150 (154)
T PF01343_consen 93 DELYDQFVNDVAEGRGLSPDD-VEEIADGGVFTAQQALELGLIDEIGT-FDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHTS-HHH-HHCHHCCHEEEHHHHHHTTSSSEETS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHH-HHHHHhhccccHHHHHHcCchhhcCC-HHHHHHHHHHH
Confidence 1111 22346889999999999999999988 88887766553
No 117
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.53 E-value=7.1e-05 Score=53.85 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHh
Q psy15240 1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALT 61 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l 61 (155)
+.|.|...|.-++++||. |++. +++.|.+.+...+......- ...+....| .....+++-
T Consensus 81 ~~G~aaSaa~~i~~ag~~~~R~~~-~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 159 (182)
T PF00574_consen 81 VLGLAASAATLIFLAGDKGKRYAS-PNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD 159 (182)
T ss_dssp EEEEEETHHHHHHHTSSTTTEEE--TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred EeCccccceehhhhcCCcCceeee-ecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 358899999999999999 8999 99999999987776531111 122222323 344455555
Q ss_pred cCCCCCHHHHHHcCccceecC
Q psy15240 62 SGKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v~~ 82 (155)
...-++++||+++||||+|+.
T Consensus 160 ~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 160 RDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp STEEEEHHHHHHHTSSSEEES
T ss_pred CCccccHHHHHHcCCCCEecc
Confidence 666689999999999999987
No 118
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.50 E-value=0.00039 Score=50.59 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=55.7
Q ss_pred CcccchHHHHHHhhcc--eeeeecCceeeeccccccccc---CChh------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGII---APFW------------FVDTMVHTLGP--RQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~---~~~~------------~~~~l~~~~g~--~~a~~l~l~ 62 (155)
-|.|...|.-|++++| .|++. ++++|.+.+..-|.. .+.. ....+.++-|. ....+++-.
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~-p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSL-PNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEec-CCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 4778888888888665 69999 999999987654322 1110 00123344443 455666777
Q ss_pred CCCCCHHHHHHcCccceecC
Q psy15240 63 GKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~ 82 (155)
+.-+|++||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 78899999999999999975
No 119
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.40 E-value=0.001 Score=51.55 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|-|+|+||+. .+++.+|++|+. +++.+++.-.+ .+...++. ++ --+.-+++-+.+.|+||.
T Consensus 201 v~gpt~GG~aas~a~~~D~iia~-p~A~ig~aGpr-----------vie~~~~e----~l--pe~~~~ae~~~~~G~vD~ 262 (292)
T PRK05654 201 LTDPTTGGVSASFAMLGDIIIAE-PKALIGFAGPR-----------VIEQTVRE----KL--PEGFQRAEFLLEHGAIDM 262 (292)
T ss_pred EeCCCchHHHHHHHHcCCEEEEe-cCcEEEecCHH-----------HHHhhhhh----hh--hhhhcCHHHHHhCCCCcE
Confidence 3589999975 468889999999 88766653331 11111221 11 112336777789999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCCh
Q psy15240 80 EVTSEEEAITRAETFLAQYATIPG 103 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~~~~ 103 (155)
|++ +.++.....++++.+...++
T Consensus 263 Vv~-~~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 263 IVH-RRELRDTLASLLALHTKQPA 285 (292)
T ss_pred EEC-HHHHHHHHHHHHHHHhcCCC
Confidence 999 99999999998887765543
No 120
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.38 E-value=0.00069 Score=50.37 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=56.5
Q ss_pred CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~ 62 (155)
-|.|.+.|.-|++++|. |++. +++++-+....-|...... ....+....|. ....+.+-.
T Consensus 120 ~G~AAS~AslIl~aG~~gkR~~~-pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 120 TGMAASMASVLLVAGTKGKRSAL-PHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEEehhHHHHHHhcCCCCceeeC-CCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 47888999999999996 8999 9999988887544321111 01112233342 344555566
Q ss_pred CCCCCHHHHHHcCccceecC
Q psy15240 63 GKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~ 82 (155)
..-+|++||+++||||+|++
T Consensus 199 d~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 199 DYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred CccCCHHHHHHcCCccEEee
Confidence 67799999999999999987
No 121
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.33 E-value=0.0006 Score=45.84 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy15240 90 RAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQ 150 (155)
Q Consensus 90 ~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 150 (155)
-+.+.++.|...+|.++..+-+++++....++.++++.|.....+++..+|+.||+++.+-
T Consensus 32 ~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 32 WAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp HHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 3556667888999999999999999998899999999999999999999999999999865
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.29 E-value=0.0017 Score=49.73 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCcc--cchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCH--HHHHHHHhcCCCCCHHHHHHcCc
Q psy15240 1 MKGH--APGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP--RQTELALTSGKMFTSAEALKVGL 76 (155)
Q Consensus 1 v~G~--a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~--~~a~~l~l~g~~~~a~eA~~~Gl 76 (155)
|-|+ |+||+..++.+||++|++ +++++++.-.. . .....|. -...+--+.-+.+.+......|+
T Consensus 143 v~Gp~gc~GG~a~~a~l~D~vim~-~~a~i~~aGP~-------V----Ie~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~ 210 (274)
T TIGR03133 143 IGGRVGCFGGMGIAAGLCSYLIMT-EEGRLGLSGPE-------V----IEQEAGVEEFDSRDRALVWRTTGGKHRFLSGD 210 (274)
T ss_pred EeCCCCcchHHHHHHhcCCEEEEe-CCcEEeccCHH-------H----HHHhcCCCccCHHHhcccccccchHhHhhccc
Confidence 3588 899999999999999999 77766553211 1 1112221 11122222223455566788999
Q ss_pred cceecCChh
Q psy15240 77 IDEEVTSEE 85 (155)
Q Consensus 77 v~~v~~~~~ 85 (155)
+|.+++|+.
T Consensus 211 ~D~~v~dd~ 219 (274)
T TIGR03133 211 ADVLVEDDV 219 (274)
T ss_pred ceEEeCCHH
Confidence 999999543
No 123
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.24 E-value=0.0013 Score=50.80 Aligned_cols=81 Identities=26% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|-|+|+||+. .+++.+|++|+. +++.+++.-.++ +...+|. -+ .-+.-+++-+.+.|+||.
T Consensus 200 v~gpt~GG~aas~a~~~D~iia~-p~A~ig~aGprV-----------ie~ti~e-----~l-pe~~q~ae~~~~~G~vD~ 261 (285)
T TIGR00515 200 LTDPTTGGVSASFAMLGDLNIAE-PKALIGFAGPRV-----------IEQTVRE-----KL-PEGFQTSEFLLEHGAIDM 261 (285)
T ss_pred EeCCcchHHHHHHHhCCCEEEEE-CCeEEEcCCHHH-----------HHHHhcC-----cc-chhcCCHHHHHhCCCCcE
Confidence 3589999975 477899999999 888766643321 2222221 11 112336666889999999
Q ss_pred ecCChhHHHHHHHHHHHHHhc
Q psy15240 80 EVTSEEEAITRAETFLAQYAT 100 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l~~ 100 (155)
|++ +.++.+....++..+..
T Consensus 262 iv~-~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 262 IVH-RPEMKKTLASLLAKLQN 281 (285)
T ss_pred EEC-cHHHHHHHHHHHHHHhh
Confidence 999 89999888888776544
No 124
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.18 E-value=0.0015 Score=47.71 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=55.7
Q ss_pred CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~ 62 (155)
-|.|.+.|.-|++++|- |++. +++++-+....-|...... ....+..+.|. ....+++-.
T Consensus 91 ~G~AaS~AslIl~aG~~~~R~~~-p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 91 VGLAASMGAFLLCAGAKGKRSSL-QHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEehhHHHHHHhCCCCCceecC-CCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 47888899999999985 8899 9999988887544321110 01123333343 344555556
Q ss_pred CCCCCHHHHHHcCccceecC
Q psy15240 63 GKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~ 82 (155)
..-+|++||+++||||+|++
T Consensus 170 d~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred CcCCCHHHHHHcCCCcEEec
Confidence 66799999999999999998
No 125
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.14 E-value=0.0049 Score=47.85 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCcc--cchHHHHHHhhcceeeeecCceeeec
Q psy15240 1 MKGH--APGAGCQFAMSCEYRIMVGPKYTIGL 30 (155)
Q Consensus 1 v~G~--a~GgG~~la~~cD~~ia~~~~a~~~~ 30 (155)
|-|+ |+||+.-.+.+||++|++ +++++++
T Consensus 152 v~G~~gc~GG~a~~a~l~D~iIm~-~~a~igl 182 (301)
T PRK07189 152 IGGRVGCFGGMGIAAALCSYLIVS-EEGRLGL 182 (301)
T ss_pred EcCCCCCcHHHHHHHhcCCEEEEE-CCcEEec
Confidence 3577 999999999999999999 8776555
No 126
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.06 E-value=0.0018 Score=50.89 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=57.2
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhH-------------------------------HHHHH--
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWF-------------------------------VDTMV-- 48 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~-------------------------------~~~l~-- 48 (155)
++.|.-||.-++++||.+|+. +.+.++...+....+ .... -..+.
T Consensus 162 ~~~AASggY~iAsaAD~I~A~-P~a~vGSIGVi~~~~-~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~ 239 (330)
T PRK11778 162 DKVAASGGYMMACVADKIIAA-PFAIVGSIGVVAQIP-NFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREE 239 (330)
T ss_pred CCchhhHHHHHHHhCCEEEEC-CCCeEEeeeeeeecc-CHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHH
Confidence 567778999999999999999 888776554432211 1100 00011
Q ss_pred ---------HhhCHH---HHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240 49 ---------HTLGPR---QTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET 93 (155)
Q Consensus 49 ---------~~~g~~---~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~ 93 (155)
..+-.. ...+-+.+|+.+++++|++.||||++.. .+++.....+
T Consensus 240 Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~-~dd~i~~~~~ 295 (330)
T PRK11778 240 LEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQT-SDDYLLELMK 295 (330)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCC-HHHHHHHHHh
Confidence 111111 1133456899999999999999999998 7777654443
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.03 E-value=0.003 Score=46.35 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=56.8
Q ss_pred CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240 2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS 62 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~ 62 (155)
.|.|.+.|.-|++++|- |++. +++++-+.....|...... ....+.++-|. ....+++-.
T Consensus 93 ~G~AaS~As~il~aG~kgkR~~~-pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~r 171 (201)
T PRK14513 93 VGIAMSMGSVLLMAGDKGKRMAL-PNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMER 171 (201)
T ss_pred EeeehhhHHHHHhcCCCCcEEec-CCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcc
Confidence 57888899999999996 8999 9999998887655421000 11122333342 344555556
Q ss_pred CCCCCHHHHHHcCccceecC
Q psy15240 63 GKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~ 82 (155)
..-+||+||+++||||+|++
T Consensus 172 d~~msa~EA~eyGliD~I~~ 191 (201)
T PRK14513 172 DYFMSPEEAKAYGLIDSVIE 191 (201)
T ss_pred CcccCHHHHHHcCCCcEEec
Confidence 66799999999999999988
No 128
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.00 E-value=0.0052 Score=47.52 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCcccchHHHH-HHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240 1 MKGHAPGAGCQ-FAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 1 v~G~a~GgG~~-la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 79 (155)
|.|+|.||+.. +++.||++|+. +++.+++.-.+ .. ...+|. - +.-+.-+++-.++.|+||.
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae-~~A~IgfAGPr-------VI----e~t~ge-----~-lpe~fq~ae~l~~~G~vD~ 275 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAE-PNAYIAFAGKR-------VI----EQTLNK-----T-VPEGSQAAEYLFDKGLFDL 275 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEe-CCeEEEeeCHH-------HH----HHhcCC-----c-CCcccccHHHHHhCcCceE
Confidence 35899999975 57789999997 88765543321 11 111111 0 1122345777889999999
Q ss_pred ecCChhHHHHHHHHHHHHH
Q psy15240 80 EVTSEEEAITRAETFLAQY 98 (155)
Q Consensus 80 v~~~~~~~~~~~~~~a~~l 98 (155)
||+ ..++.+....++.-+
T Consensus 276 iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 276 IVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred EEc-HHHHHHHHHHHHHhh
Confidence 999 999988777766543
No 129
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.99 E-value=0.0022 Score=50.29 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=61.6
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhC----------------------------
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG---------------------------- 52 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g---------------------------- 52 (155)
|++.|.-||.-++++||.+|++ +++..+---+..+.+ ....+-.++|
T Consensus 135 v~~~AASGGY~IA~aAd~I~a~-p~si~GSIGVi~~~~----~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~ 209 (317)
T COG0616 135 VGGYAASGGYYIALAADKIVAD-PSSITGSIGVISGAP----NFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREI 209 (317)
T ss_pred ECCeecchhhhhhccCCEEEec-CCceeeeceeEEecC----CHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHH
Confidence 5788999999999999999999 999887666555532 1222333333
Q ss_pred ----------------------HHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240 53 ----------------------PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET 93 (155)
Q Consensus 53 ----------------------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~ 93 (155)
......-+.+|+.+++++|++.||||++.. .++......+
T Consensus 210 ~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~-~~~av~~~~~ 271 (317)
T COG0616 210 LQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG-LDDAVKDAAE 271 (317)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC-HHHHHHHHHH
Confidence 111133556889999999999999999998 5554444333
No 130
>PRK10949 protease 4; Provisional
Probab=96.97 E-value=0.0029 Score=53.83 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=56.7
Q ss_pred CcccchHHHHHHhhcceeeeecCceeeecccc------------cccccCChhH-----------------HHHHH----
Q psy15240 2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNET------------KMGIIAPFWF-----------------VDTMV---- 48 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~------------~~Gl~~~~~~-----------------~~~l~---- 48 (155)
.+.|.-||.-++++||.+|+. +.+..+.--+ ++|+.+.... ...+.
T Consensus 404 ~~~aASggY~iA~aad~I~a~-p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld 482 (618)
T PRK10949 404 GGMAASGGYWISTPANYIVAS-PSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIE 482 (618)
T ss_pred CCCCccHHHHHHHhcCEEEEC-CCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHH
Confidence 467778999999999999999 8665444221 2333221000 00011
Q ss_pred -------------HhhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240 49 -------------HTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF 94 (155)
Q Consensus 49 -------------~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~ 94 (155)
|.+...... -+..|+.+++++|++.||||++-. .++..+.+.++
T Consensus 483 ~~y~~F~~~Va~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~-~~~ai~~a~~~ 539 (618)
T PRK10949 483 NGYKRFITLVADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGD-FDDAVAKAAEL 539 (618)
T ss_pred HHHHHHHHHHHhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCC-HHHHHHHHHHH
Confidence 112222333 345899999999999999999988 67766555553
No 131
>KOG1683|consensus
Probab=96.78 E-value=0.001 Score=52.55 Aligned_cols=151 Identities=34% Similarity=0.476 Sum_probs=96.3
Q ss_pred CCcccchHH--HHHHhhcceeeeec-CceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcc
Q psy15240 1 MKGHAPGAG--CQFAMSCEYRIMVG-PKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLI 77 (155)
Q Consensus 1 v~G~a~GgG--~~la~~cD~~ia~~-~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv 77 (155)
+||++-.|+ +-++-+|+||+.-. +.-..+..+...++..+..-.-.+...+|.+.+-..+--+.-|+..||.+-|++
T Consensus 155 in~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~ 234 (380)
T KOG1683|consen 155 INGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLG 234 (380)
T ss_pred HhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccc
Confidence 356666667 67899999999762 232337888888844444555566777777777677778899999999999999
Q ss_pred ceecCC-hhHHHHHHHHHHHHHhcCChHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy15240 78 DEEVTS-EEEAITRAETFLAQYATIPGAARKLTK--------LMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLY 148 (155)
Q Consensus 78 ~~v~~~-~~~~~~~~~~~a~~l~~~~~~a~~~~K--------~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 148 (155)
+++.+. .+++.+......+.-....+.+-..+| +.+++-..... ......+.+.....+|-.+|++..+
T Consensus 235 ~~~~~r~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~--~r~~~~ed~v~~~~~p~VnEal~~l 312 (380)
T KOG1683|consen 235 DEIGPRIEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPN--PRVADDEDFVEFLLSPFVNEALRCL 312 (380)
T ss_pred hhccchhHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCC--cccCCHHHHHHHHhhHHHHHHHHHH
Confidence 999994 466666665555444333333222222 22222220000 0111234566667788899999999
Q ss_pred Hhhcc
Q psy15240 149 LQSLK 153 (155)
Q Consensus 149 ~~~~~ 153 (155)
.++-+
T Consensus 313 ~EGi~ 317 (380)
T KOG1683|consen 313 LEGLK 317 (380)
T ss_pred HHHHh
Confidence 88643
No 132
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=96.64 E-value=0.01 Score=45.39 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=37.5
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhH
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWF 43 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~ 43 (155)
|+..|.-+|.-+|++||-+|+. +++.+|--+..+|-.|....
T Consensus 125 VP~~A~SAGTlIALaADeIvM~-p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMG-PGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred ECcccccHHHHHHHhCCeEEEC-CCCccCCCCccccCCChHHH
Confidence 5678999999999999999999 99999999999998875443
No 133
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.56 E-value=0.011 Score=44.07 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=53.2
Q ss_pred CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhHH-----------------HHHHHhhCH--HHHHHHH
Q psy15240 2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWFV-----------------DTMVHTLGP--RQTELAL 60 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~~-----------------~~l~~~~g~--~~a~~l~ 60 (155)
-|.|.+.+.-|++++|- |++. +++++-+....-|.. +... ..+...-|. ....+.+
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~al-pns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASL-PHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecC-CCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 47888889999999996 8999 999999888765543 1111 111222221 2223333
Q ss_pred hcCCCCCHHHHHHcCccceecC
Q psy15240 61 TSGKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 61 l~g~~~~a~eA~~~Glv~~v~~ 82 (155)
-.-.-+|++||+++||||+|++
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEec
Confidence 3444599999999999999987
No 134
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.56 E-value=0.0043 Score=51.68 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCcccchHHHHHHhhcceeeeecCce-eeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------H
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKY-TIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------L 72 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a-~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~ 72 (155)
|.|+|+||+.-....||++|++ +++ ++.+ . |++.... .+|+.++.++. .
T Consensus 161 v~G~~~GG~a~~~al~D~vim~-~~~a~i~~-------a-------------GP~vv~~--~~Ge~v~~e~lGGa~~h~~ 217 (512)
T TIGR01117 161 IMGPCAGGAVYSPALTDFIYMV-DNTSQMFI-------T-------------GPQVIKT--VTGEEVTAEQLGGAMAHNS 217 (512)
T ss_pred EecCCCcHHHHHHHhcCceEEe-ccceEEEe-------c-------------ChHHHHh--hcCcccchhhcchHHHhcc
Confidence 4699999998877899999999 653 3333 2 1111111 24555555544 3
Q ss_pred HcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240 73 KVGLIDEEVTSEEEAITRAETFLAQYATI 101 (155)
Q Consensus 73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~~~ 101 (155)
.-|++|.+++|+++..+.+++++.-+-..
T Consensus 218 ~sGv~d~~~~de~ea~~~~r~~ls~lp~~ 246 (512)
T TIGR01117 218 VSGVAHFIAEDDDDCIMLIRRLLSFLPSN 246 (512)
T ss_pred ccceeEEecCChHHHHHHHHHHHHhCCcC
Confidence 58999999998899998888888876543
No 135
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.26 E-value=0.0094 Score=44.86 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=46.3
Q ss_pred CcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcC--CCCCHHHHHHcCccc
Q psy15240 2 KGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSG--KMFTSAEALKVGLID 78 (155)
Q Consensus 2 ~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g--~~~~a~eA~~~Glv~ 78 (155)
-|.++|||+ .+.+.+|.+++- +++ .++..++.+.+..+.+-. ..+.++.-.- -..++..+.++|+||
T Consensus 115 ~g~a~ggg~lamg~~ad~v~Al-p~A-------~i~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd 184 (238)
T TIGR03134 115 YGKAISGAFLAHGLQADRIIAL-PGA-------MVHVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVH 184 (238)
T ss_pred eCCccHHHHHHHccCcCeEEEc-CCc-------EEEecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCcc
Confidence 477888775 355457888877 666 555555555554444333 3334443221 246777899999999
Q ss_pred eecCChhH
Q psy15240 79 EEVTSEEE 86 (155)
Q Consensus 79 ~v~~~~~~ 86 (155)
+|++ +.+
T Consensus 185 ~vi~-~~~ 191 (238)
T TIGR03134 185 ALLD-VAD 191 (238)
T ss_pred EEeC-CCC
Confidence 9999 544
No 136
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.23 E-value=0.0071 Score=50.22 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=53.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------H
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------L 72 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~ 72 (155)
|.|+|+|||.-++..||++|++ ++ +.+ ++..|.. . + ..+|+.++.++. .
T Consensus 138 v~G~~~Gg~A~~~~~~d~~i~~-~~~a~i-------~l~GP~v-------------v-~-~~~Ge~~~~~~lgG~~~h~~ 194 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALSDFVIMV-KGTARI-------FLAGPRV-------------V-E-SATGEEVDSEELGGADVHAA 194 (493)
T ss_dssp EESEEEGGGGHHHHHSSEEEEE-TTTCEE-------ESSTHHH-------------H-H-HHHSSCTSHHHHHBHHHHHH
T ss_pred EccccccchhhcccccCccccC-ccceEE-------Eeccccc-------------c-c-cccCccccchhhhhhhhhcc
Confidence 4699999999999999999999 65 644 3331111 1 1 234688887653 4
Q ss_pred HcCccceecCChhHHHHHHHHHHHHHh
Q psy15240 73 KVGLIDEEVTSEEEAITRAETFLAQYA 99 (155)
Q Consensus 73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~ 99 (155)
..|++|.+++|+++..+.+.+++.-+-
T Consensus 195 ~sG~~d~v~~de~~a~~~ir~~ls~lp 221 (493)
T PF01039_consen 195 KSGVVDYVVDDEEDALAQIRRLLSYLP 221 (493)
T ss_dssp TSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred cCCCceEEEechHHHHHHHHHhhcccc
Confidence 789999999976676777777666554
No 137
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.81 E-value=0.038 Score=40.40 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred CcccchHHHHHHhhccee--eeecCceeeecccccccccCChhH----------------HHHHHHhhCH--HHHHHHHh
Q psy15240 2 KGHAPGAGCQFAMSCEYR--IMVGPKYTIGLNETKMGIIAPFWF----------------VDTMVHTLGP--RQTELALT 61 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~--ia~~~~a~~~~~e~~~Gl~~~~~~----------------~~~l~~~~g~--~~a~~l~l 61 (155)
-|.|...|..|++++|.. ++. +++++-+....-|+. +... ...+...-|. .+-...+-
T Consensus 93 ~G~AaSmgs~l~~aG~~g~r~~l-PnsrimIHqP~gg~~-G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~d 170 (200)
T COG0740 93 MGQAASMGSVLLMAGDKGKRFAL-PNARIMIHQPSGGAQ-GQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTD 170 (200)
T ss_pred ecHHHhHHHHHHhcCCCCCceeC-CCceEEEecCCccCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence 355666677899999985 998 898888777763332 1111 0011111121 11122222
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q psy15240 62 SGKMFTSAEALKVGLIDEEVTS 83 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~v~~~ 83 (155)
...-++++||+++||||+|.+.
T Consensus 171 rd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 171 RDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred ccccCCHHHHHHcCCcceeccc
Confidence 3445899999999999999883
No 138
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.50 E-value=0.05 Score=45.99 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=51.4
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-----H--H
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-----L--K 73 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-----~--~ 73 (155)
|-|+|.|||.-+...||++|++++++.+.+ . |+.... . .+|+.++.++. + .
T Consensus 212 v~G~~~gGgAy~~a~~D~vim~~~~a~i~~-------a-------------GP~vV~-~-~~Ge~v~~eeLGGa~~h~~~ 269 (569)
T PLN02820 212 VLGSCTAGGAYVPAMADESVIVKGNGTIFL-------A-------------GPPLVK-A-ATGEEVSAEDLGGADVHCKV 269 (569)
T ss_pred EeCCCChHHHHHHHhCCceEEecCCcEEEe-------c-------------CHHHHH-h-hcCcccCHHHhCCHHHhccc
Confidence 468999999999999999999944554443 2 111111 1 24555665544 3 4
Q ss_pred cCccceecCChhHHHHHHHHHHHHHh
Q psy15240 74 VGLIDEEVTSEEEAITRAETFLAQYA 99 (155)
Q Consensus 74 ~Glv~~v~~~~~~~~~~~~~~a~~l~ 99 (155)
-|.+|-+++|+.+..+.+++++.-|-
T Consensus 270 sGv~d~~~~de~~a~~~~R~lls~Lp 295 (569)
T PLN02820 270 SGVSDHFAQDELHALAIGRNIVKNLH 295 (569)
T ss_pred ccccccccCchHHHHHHHHHHHHhcC
Confidence 79999999977777677777666663
No 139
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.43 E-value=0.091 Score=42.60 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhh
Q psy15240 93 TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYLQS 151 (155)
Q Consensus 93 ~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~ 151 (155)
+.++.|.+.+|.++..+-+++++....++++++..|.....+++. ++|+.||+++-+-.
T Consensus 296 ~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD 357 (401)
T PLN02157 296 TTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLID 357 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Confidence 334567788999999999999998888999999999999998885 69999999998653
No 140
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.074 Score=43.23 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=65.7
Q ss_pred cccchHHHHHHhhcceeeeecCceeeecccccccc---cCChh-HHHH------HHHhhC--HHHHHHHHhcCCCCCHHH
Q psy15240 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI---IAPFW-FVDT------MVHTLG--PRQTELALTSGKMFTSAE 70 (155)
Q Consensus 3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl---~~~~~-~~~~------l~~~~g--~~~a~~l~l~g~~~~a~e 70 (155)
++|.-+|.-++++||+.++. +.+.++-...-.+- ..+.. .... +.+.-| ...|.+++.....++++|
T Consensus 97 a~AaSAGtyI~m~~hiaaMA-PgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~e 175 (436)
T COG1030 97 ARAASAGTYILMATHIAAMA-PGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEE 175 (436)
T ss_pred cchhchhhHHHHhcChhhhC-CCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhH
Confidence 57888999999999999999 99988877755443 11111 1112 222333 357788999999999999
Q ss_pred HHHcCccceecCChhHHHHHHHH
Q psy15240 71 ALKVGLIDEEVTSEEEAITRAET 93 (155)
Q Consensus 71 A~~~Glv~~v~~~~~~~~~~~~~ 93 (155)
|.+.|++|-+..|..++.....-
T Consensus 176 A~~~~vid~iA~~~~ell~~~~g 198 (436)
T COG1030 176 ALRQGVIDLIARDLNELLKKLDG 198 (436)
T ss_pred HHhcCccccccCCHHHHHHHccC
Confidence 99999999998876776655443
No 141
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.74 E-value=0.13 Score=39.76 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=48.0
Q ss_pred hHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceecC
Q psy15240 7 GAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 7 GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 82 (155)
+||.--...+|.+++- ++++++. ++|.++.+.+|.. ..++.+.. ..-.+++++.+++|+||.|++
T Consensus 201 SGGALAi~vad~V~ml-e~s~ySV------isPEG~AsILWkD---~~ka~eAA-e~mkita~dLk~lgiID~II~ 265 (317)
T COG0825 201 SGGALAIGVADRVLML-ENSTYSV------ISPEGCASILWKD---ASKAKEAA-EAMKITAHDLKELGIIDGIIP 265 (317)
T ss_pred chhhHHhhHHHHHHHH-Hhceeee------cChhhhhhhhhcC---hhhhHHHH-HHcCCCHHHHHhCCCcceecc
Confidence 3444444567999999 9998876 6777777766553 34444444 456899999999999999998
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=94.68 E-value=0.19 Score=42.04 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=56.1
Q ss_pred CCcccchHHHHHHhh-----cceeeeecCceeeecccccccccCChhHHHHHH-HhhC----HHHH-HHHH--hcCCCCC
Q psy15240 1 MKGHAPGAGCQFAMS-----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMV-HTLG----PRQT-ELAL--TSGKMFT 67 (155)
Q Consensus 1 v~G~a~GgG~~la~~-----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~-~~~g----~~~a-~~l~--l~g~~~~ 67 (155)
|-|.++|||. ++++ +|++|+- +++++ |+.++-+....+. +.+. ...+ .+.+ +.-+..+
T Consensus 395 i~g~~~Gga~-~am~~~~~~~d~~~a~-p~a~~-------~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (512)
T TIGR01117 395 ITRKAYGGAY-LAMCSKHLGADQVYAW-PTAEI-------AVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFAN 465 (512)
T ss_pred EcCCCchHHH-HHhccccCCCCEEEEc-CCCeE-------eecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcC
Confidence 3478888764 4443 8998888 77654 4444444433332 2211 1111 1111 1223557
Q ss_pred HHHHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240 68 SAEALKVGLIDEEVTSEEEAITRAETFLAQYATI 101 (155)
Q Consensus 68 a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~ 101 (155)
+..+.+.|+||.|++ +.+........++.+...
T Consensus 466 ~~~~a~~g~vD~VI~-P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 466 PYKAAARGYVDDVIE-PKQTRPKIVNALAMLESK 498 (512)
T ss_pred HHHHHhcCCCCeeEC-hHHHHHHHHHHHHHHhcC
Confidence 889999999999999 999998888877765443
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.38 E-value=0.11 Score=39.67 Aligned_cols=82 Identities=27% Similarity=0.332 Sum_probs=56.5
Q ss_pred cccchHH-HHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240 3 GHAPGAG-CQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV 81 (155)
Q Consensus 3 G~a~GgG-~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 81 (155)
.|..||- ..+++..|+.|+. +.+.++|.-.+ ..-++....++. | .-+++-.++.|+||.||
T Consensus 204 ~PTtGGVsASfA~lGDi~iAE-P~AlIGFAGpR-------VIEQTire~LPe---------g-fQ~aEfLlehG~iD~iv 265 (294)
T COG0777 204 DPTTGGVSASFAMLGDIIIAE-PGALIGFAGPR-------VIEQTIREKLPE---------G-FQTAEFLLEHGMIDMIV 265 (294)
T ss_pred CCCccchhHhHHhccCeeecC-cccccccCcch-------hhhhhhcccCCc---------c-hhhHHHHHHcCCceeee
Confidence 4566665 4699999999999 88766554433 222222222222 1 34567788999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCh
Q psy15240 82 TSEEEAITRAETFLAQYATIPG 103 (155)
Q Consensus 82 ~~~~~~~~~~~~~a~~l~~~~~ 103 (155)
+ ..++......+...+...++
T Consensus 266 ~-R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 266 H-RDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred c-HHHHHHHHHHHHHHhCCCCC
Confidence 9 89999888888887776544
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=89.25 E-value=0.34 Score=40.50 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=54.3
Q ss_pred CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHH-------HHH
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAE-------ALK 73 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~e-------A~~ 73 (155)
|-|+|.|||.=+-..||++|+. ++. ..+.+. |+... +. -+|+.++++| +..
T Consensus 170 v~G~c~gGgaY~pal~D~~imv-~~~------~~mflt-------------GP~~i-k~-vtGe~V~~e~LGGa~vh~~~ 227 (526)
T COG4799 170 VMGPCAGGGAYSPALTDFVIMV-RDQ------SYMFLT-------------GPPVI-KA-VTGEEVSAEELGGAQVHARK 227 (526)
T ss_pred EEecCcccccccccccceEEEE-cCC------ccEEee-------------CHHHH-Hh-hcCcEeehhhccchhhhccc
Confidence 4699999999999999999999 663 222232 11111 11 2566666663 344
Q ss_pred cCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240 74 VGLIDEEVTSEEEAITRAETFLAQYATI 101 (155)
Q Consensus 74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~~ 101 (155)
.|.+|-+.+|+++..+.+++++.-|-..
T Consensus 228 sGva~~~a~dd~~Ai~~vr~~lsylp~~ 255 (526)
T COG4799 228 SGVADLLAEDDEDAIELVRRLLSYLPSN 255 (526)
T ss_pred ccceeeeecCHHHHHHHHHHHHHhcCcc
Confidence 4999999998888888888877766543
No 145
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=87.89 E-value=3.3 Score=35.40 Aligned_cols=29 Identities=17% Similarity=-0.038 Sum_probs=23.4
Q ss_pred CCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240 65 MFTSAEALKVGLIDEEVTSEEEAITRAETF 94 (155)
Q Consensus 65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~ 94 (155)
..++++|++.||||++.. .+++.+...+.
T Consensus 251 g~~a~~A~~~gLVD~l~~-~de~~~~l~~~ 279 (584)
T TIGR00705 251 GDGARYALAEKLVTAVCS-YAEAGKALKFL 279 (584)
T ss_pred CchHHHHHHCCCcccCCC-HHHHHHHHHHH
Confidence 347999999999999998 88877665543
No 146
>smart00250 PLEC Plectin repeat.
Probab=87.12 E-value=0.53 Score=24.79 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=17.0
Q ss_pred cCCCCCHHHHHHcCccce
Q psy15240 62 SGKMFTSAEALKVGLIDE 79 (155)
Q Consensus 62 ~g~~~~a~eA~~~Glv~~ 79 (155)
+++++|..||.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=86.23 E-value=5.5 Score=33.99 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=53.7
Q ss_pred cccchHHHHHHh----hcceeeeecCceeeecccccccccCChhHHHHHHHh-h------------CHHHH-HHHH--hc
Q psy15240 3 GHAPGAGCQFAM----SCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-L------------GPRQT-ELAL--TS 62 (155)
Q Consensus 3 G~a~GgG~~la~----~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~------------g~~~a-~~l~--l~ 62 (155)
|.|+|+|.--.+ ..|++++- |..++|..++-+....+.+. + -...+ ++.+ +.
T Consensus 448 g~a~G~g~~aM~g~~~~~d~~~aw--------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 448 GGSFGAGNYGMCGRAYSPNFLFMW--------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred CCcchHHHHHhcCcCCCCCEEEEC--------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 678887754332 34555555 55567766666665555431 2 11101 1111 12
Q ss_pred CCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI 101 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~ 101 (155)
-+..++-.+.+.|+||+|++ +.+........+..+...
T Consensus 520 ~~~~~p~~aa~~~~vD~VId-P~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 520 EREANPYYSTARLWDDGVID-PADTRRVLGLCLSAALNR 557 (569)
T ss_pred HHhCCHHHHHHcCCcCcccC-HHHHHHHHHHHHHHhhcC
Confidence 23557778999999999999 998887777776655444
No 148
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=84.46 E-value=0.37 Score=26.47 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred hcCCCCCHHHHHHcCcccee
Q psy15240 61 TSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 61 l~g~~~~a~eA~~~Glv~~v 80 (155)
-+|+++|.++|.+.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 47899999999999999853
No 149
>PRK10949 protease 4; Provisional
Probab=84.40 E-value=6.6 Score=33.84 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240 65 MFTSAEALKVGLIDEEVTSEEEAITRAETF 94 (155)
Q Consensus 65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~ 94 (155)
..++++|++.||||++.. .+++.+...+.
T Consensus 270 ~~~a~~Al~~GLVD~l~~-~de~~~~l~~~ 298 (618)
T PRK10949 270 GDTAKYALDNKLVDALAS-SAEIEKALTKA 298 (618)
T ss_pred CccHHHHHHCCCCCcCCC-HHHHHHHHHHH
Confidence 468999999999999988 88877665554
No 150
>KOG0840|consensus
Probab=76.93 E-value=1.3 Score=33.72 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHcCccceecC
Q psy15240 63 GKMFTSAEALKVGLIDEEVT 82 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~ 82 (155)
-+.++++||+++||||.|.+
T Consensus 237 d~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 237 DRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred cccCCHHHHHHhcchhhhhc
Confidence 34589999999999999987
No 151
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=73.45 E-value=10 Score=31.75 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=52.0
Q ss_pred cccchHHHHHHhhc----ceeeeecCceeeecccccccccCChhHHHHHHHh-hCHH--------H-HHHHH--hcCCCC
Q psy15240 3 GHAPGAGCQFAMSC----EYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-LGPR--------Q-TELAL--TSGKMF 66 (155)
Q Consensus 3 G~a~GgG~~la~~c----D~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g~~--------~-a~~l~--l~g~~~ 66 (155)
|.++|||.--.... |++++- ++ ..+|+.++.+....+.+. +-.. . ..+.+ +.-+.-
T Consensus 376 ~~~~Gga~~am~~~~~~~~~~~Aw-p~-------a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (493)
T PF01039_consen 376 RKAYGGAYYAMCGRGYGPDFVFAW-PT-------AEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELS 447 (493)
T ss_dssp EEEEHHHHHHTTGGGGTTSEEEEE-TT--------EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHS
T ss_pred CCccCcchhhhcccccchhhhhhh-hc-------ceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcC
Confidence 56788776433333 555555 55 456655544544433322 1100 0 11122 122336
Q ss_pred CHHHHHHcCccceecCChhHHHHHHHHHHHHHhcCC
Q psy15240 67 TSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIP 102 (155)
Q Consensus 67 ~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~ 102 (155)
++..+...|++|.|++ +.+..........-+.+.+
T Consensus 448 ~~~~~a~~~~~D~ii~-p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 448 SPYRAASRGYVDDIID-PAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp SHHHHHHTTSSSEESS-GGGHHHHHHHHHHHHTTSH
T ss_pred CHHHHHhcCCCCCccC-HHHHHHHHHHHHHHHHhCc
Confidence 8899999999999999 9999888777766555443
No 152
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=65.86 E-value=4.6 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHHHHHHhhccCC
Q psy15240 142 QKGLGLYLQSLKKK 155 (155)
Q Consensus 142 ~~~~~~~~~~~~~k 155 (155)
+..+..|++||+.|
T Consensus 5 K~SLqRFLeKRK~R 18 (27)
T PF09425_consen 5 KASLQRFLEKRKDR 18 (27)
T ss_dssp -HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHh
Confidence 56788999988754
No 153
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=49.45 E-value=11 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=26.3
Q ss_pred hcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHH
Q psy15240 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97 (155)
Q Consensus 61 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~ 97 (155)
-|...+++-|..-+|+|+++++|-|++.+..++.++.
T Consensus 10 TT~~eIPGiely~~gIvS~~~envd~li~~lee~vk~ 46 (81)
T PF11524_consen 10 TTTNEIPGIELYYLGIVSEASENVDELIKKLEEKVKA 46 (81)
T ss_dssp ESSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHHH
T ss_pred EEcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHHh
Confidence 3566788888999999999999888888777776554
No 154
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=42.27 E-value=1.8e+02 Score=24.28 Aligned_cols=92 Identities=16% Similarity=0.022 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15240 55 QTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVD 134 (155)
Q Consensus 55 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~ 134 (155)
.+...+-.|..|++++--+. |+. +-+.+-+..+++.....+...++.+-...+......+.............
T Consensus 342 a~kkAiKkG~~itaeeitkq-----Vvk--~V~kevika~ik~~~~s~l~~~r~~~~g~~~i~~G~i~~ekA~LQK~Ie~ 414 (473)
T PRK15362 342 ALKKAVQEGVKFLLKEFTKQ-----VVK--EVFKKVIKALIRACSFKGLQAIRCTTEGANQINTGMINTEKAKLQKKIEQ 414 (473)
T ss_pred HHHHHHHhhhHhHHHHHHHH-----HHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHHH
Confidence 34556667777777775443 222 33334445555566566666666666665555544344333333444555
Q ss_pred HhcCHHHHHHHHHHHhhcc
Q psy15240 135 LITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (155)
++...++.+.+..|.++.|
T Consensus 415 LIl~q~f~qF~~e~~ek~K 433 (473)
T PRK15362 415 LILQQRFLDFIMEQYEKQK 433 (473)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 6667778888888887754
No 155
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=34.72 E-value=80 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI 101 (155)
Q Consensus 63 g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~ 101 (155)
-+..++--+.+.|++|.|++ +.+........+..+...
T Consensus 474 ~~~~~p~~aa~r~~iD~vI~-p~~tR~~L~~~l~~~~~k 511 (526)
T COG4799 474 EQFSNPYYAAERGYIDAVID-PADTRAVLGRALSALANK 511 (526)
T ss_pred HhccchHHHHHhCCCCcccC-HHHHHHHHHHHHHHHhcC
Confidence 34456777889999999999 887777666665555554
No 156
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=34.40 E-value=1.8e+02 Score=21.16 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee--cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15240 45 DTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE--VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREK 116 (155)
Q Consensus 45 ~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v--~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 116 (155)
...++-.|.....+.++.+... ..+....-+|+.- ++|.++..+-+..++....+..+......++.+...
T Consensus 106 A~~Are~GLeplA~~il~~~~~-~~~~~a~~~v~~~~gv~s~e~al~Ga~dIiAE~is~d~~~r~~lr~~~~~~ 178 (193)
T PF09371_consen 106 ATIAREAGLEPLADKILEQPES-DPEVEAKKFVNEEKGVPSVEEALAGAQDIIAERISEDPELREKLRKLLWKN 178 (193)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTS--HHHHHHTT-BGGGTB-SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCcc-chHHHHHHHhCcccCCCCHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 3455667876666667776665 3345555678776 776899999999998888888888888877777654
No 157
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.28 E-value=25 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=15.6
Q ss_pred CcccchHHHHHHhhcce
Q psy15240 2 KGHAPGAGCQFAMSCEY 18 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~ 18 (155)
-|.|+||++.+.+++..
T Consensus 117 ~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 117 VGFCMGGGLALLAATRA 133 (236)
T ss_pred EEEcccHHHHHHhhccc
Confidence 48999999999999987
No 158
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=29.06 E-value=1.6e+02 Score=24.75 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred cccccCChhHHHHHHHhhCHHHH--HHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC-ChHHHHHHH
Q psy15240 34 KMGIIAPFWFVDTMVHTLGPRQT--ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI-PGAARKLTK 110 (155)
Q Consensus 34 ~~Gl~~~~~~~~~l~~~~g~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K 110 (155)
++||. ...|...||-++-.... .+.+ .++ .++..+.-.+|+.++... +..+-....
T Consensus 397 NIGLI-EVMGLAILP~RLk~EL~~v~~~L-~~~-------------------~~~~~~~H~~Wa~~l~~~~~~~~~env~ 455 (493)
T PRK05270 397 NIGLI-EVMGLAILPGRLKEELEEVEKYL-LGE-------------------ANEVAAKHQEWAEQLKAKYGITTKENVE 455 (493)
T ss_pred cccHH-hhhhhhcCcHHHHHHHHHHHHHH-hcC-------------------CccchHHHHHHHHHHHHhcCcccHHHHH
Confidence 67777 66666666655543222 2222 222 134455666777777665 322223333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240 111 LMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151 (155)
Q Consensus 111 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
..+++....-+...++ ...-.-.+++.++++.+|++.
T Consensus 456 ~iv~~evG~vF~~VLe----dAGVFK~~~eG~~aF~rFi~~ 492 (493)
T PRK05270 456 AIVQEEVGSVFARVLE----DAGVFKRTEEGQAAFDRFIES 492 (493)
T ss_pred HHHHHHHHHHHHHHhh----ccCccccCHhHHHHHHHHHhh
Confidence 4444433332322222 222222678899999999864
No 159
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=27.23 E-value=16 Score=20.24 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=15.4
Q ss_pred HHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240 48 VHTLGPRQTELALTSGKMFTSAEALKVGLIDEE 80 (155)
Q Consensus 48 ~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v 80 (155)
.-.+| ..+ ++++.|+++.++...+.|+-=+-
T Consensus 7 kl~lG-e~a-~lll~~q~v~P~kL~~~GF~F~~ 37 (48)
T PF08338_consen 7 KLLLG-EMA-ELLLASQRVSPKKLLEAGFQFRY 37 (48)
T ss_dssp --------G-GGGG-EEEE--HHHHHTT---S-
T ss_pred HHHHH-HHH-HHHhCCCeecChHHHHCCCcccC
Confidence 34456 444 89999999999999999997543
No 160
>KOG0540|consensus
Probab=25.74 E-value=1.4e+02 Score=24.99 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=50.3
Q ss_pred CcccchHH---HHHHhhcceeeeecCceeeecccccc--cccCChhHHHH-HHHhhCH-HHHHHHHhcCCCCCHHHHHHc
Q psy15240 2 KGHAPGAG---CQFAMSCEYRIMVGPKYTIGLNETKM--GIIAPFWFVDT-MVHTLGP-RQTELALTSGKMFTSAEALKV 74 (155)
Q Consensus 2 ~G~a~GgG---~~la~~cD~~ia~~~~a~~~~~e~~~--Gl~~~~~~~~~-l~~~~g~-~~a~~l~l~g~~~~a~eA~~~ 74 (155)
-|.++||- +.-.+.-|+.|+- +++++++.-.+- ++. ... +.+-+.. ..+.+.+ |.|+. +...
T Consensus 430 t~~syGG~y~m~sr~~~gd~~yaw-P~A~IavmG~~~a~~Vi-----~q~~~e~a~~~~~~~~E~f--~npy~---a~~R 498 (536)
T KOG0540|consen 430 TGGSYGGNYAMCSRGYSGDINYAW-PNARIAVMGGKQAANVI-----FQITLEKAVALKAPYIEKF--GNPYY---AAAR 498 (536)
T ss_pred ecCccCCcccccccccCCceeEEc-ccceeeeccccchhhhh-----hhhhhhhhhhhcchHHHHh--cCccH---HHHh
Confidence 46677754 3466777888888 887776654321 111 111 1111211 2223333 55554 4678
Q ss_pred CccceecCChhHHHHHHHHHHHHHhcCC
Q psy15240 75 GLIDEEVTSEEEAITRAETFLAQYATIP 102 (155)
Q Consensus 75 Glv~~v~~~~~~~~~~~~~~a~~l~~~~ 102 (155)
|++|.|++ +.+.....-...+..+..|
T Consensus 499 g~~D~II~-p~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 499 GWDDGIID-PSDTRKVLGLDLQAAANKP 525 (536)
T ss_pred hccccccC-hhHhhHHHHHHHHHHhcCC
Confidence 99999999 8887766666555555544
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.25 E-value=82 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=19.5
Q ss_pred HHHHHcCccceecCChhHHHHHHHHHHHHH
Q psy15240 69 AEALKVGLIDEEVTSEEEAITRAETFLAQY 98 (155)
Q Consensus 69 ~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l 98 (155)
+++.++| +++|++ +..-.+.+..++++.
T Consensus 106 ~~l~~~G-~~~vf~-~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 106 KKFKEMG-FDRVFP-PGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHcC-CCEEEC-cCCCHHHHHHHHHHH
Confidence 5899999 799999 555555555555544
No 162
>KOG4391|consensus
Probab=23.85 E-value=17 Score=27.44 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=48.4
Q ss_pred CcccchHHHHHHhhccee-----eeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCc
Q psy15240 2 KGHAPGAGCQFAMSCEYR-----IMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGL 76 (155)
Q Consensus 2 ~G~a~GgG~~la~~cD~~-----ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Gl 76 (155)
-|..+||.+.+.+++|.+ +.. |+.+.+.|+..+-++.|.++ ..++..+-..+-...-..| .-...-..=-|+
T Consensus 154 fGrSlGGAvai~lask~~~ri~~~iv-ENTF~SIp~~~i~~v~p~~~-k~i~~lc~kn~~~S~~ki~-~~~~P~LFiSGl 230 (300)
T KOG4391|consen 154 FGRSLGGAVAIHLASKNSDRISAIIV-ENTFLSIPHMAIPLVFPFPM-KYIPLLCYKNKWLSYRKIG-QCRMPFLFISGL 230 (300)
T ss_pred EecccCCeeEEEeeccchhheeeeee-echhccchhhhhheeccchh-hHHHHHHHHhhhcchhhhc-cccCceEEeecC
Confidence 377889999998888874 355 89999999988877655443 2344433221111111111 111122334588
Q ss_pred cceecCChhHH
Q psy15240 77 IDEEVTSEEEA 87 (155)
Q Consensus 77 v~~v~~~~~~~ 87 (155)
-|++|| +-.+
T Consensus 231 kDelVP-P~~M 240 (300)
T KOG4391|consen 231 KDELVP-PVMM 240 (300)
T ss_pred ccccCC-cHHH
Confidence 999999 6543
No 163
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=23.48 E-value=77 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.7
Q ss_pred CceeeecccccccccCC
Q psy15240 24 PKYTIGLNETKMGIIAP 40 (155)
Q Consensus 24 ~~a~~~~~e~~~Gl~~~ 40 (155)
+.+.|-+||+.+|=+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (75)
T cd01815 2 PKSLFPFPEVELGDVSP 18 (75)
T ss_pred CcccccCCCCCCCCcCC
Confidence 67889999999995533
No 164
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=23.32 E-value=1.7e+02 Score=20.91 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHhcC--CCCCHHHHHHcCccceecCChhHHHHHHHHHHHH
Q psy15240 59 ALTSG--KMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97 (155)
Q Consensus 59 l~l~g--~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~ 97 (155)
+++|| ..-||-+|..+|-++-+.. +.+.++....+.+.
T Consensus 85 vvLTGy~sIATAV~AvKlGA~~YLaK-PAdaDdi~aAl~~~ 124 (182)
T COG4567 85 VVLTGYASIATAVEAVKLGACDYLAK-PADADDILAALLRR 124 (182)
T ss_pred EEEecchHHHHHHHHHHhhhhhhcCC-CCChHHHHHHHhhc
Confidence 44555 5678999999999999888 87777666666554
No 165
>KOG0033|consensus
Probab=22.88 E-value=1.5e+02 Score=23.20 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCC-CCCHHHHH------HcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHH
Q psy15240 53 PRQTELALTSGK-MFTSAEAL------KVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENK 125 (155)
Q Consensus 53 ~~~a~~l~l~g~-~~~a~eA~------~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~ 125 (155)
-.....+++.|. ||..++-. .-|=++---+-.+..-+.+..+.+++....|.-....++.|+..|...
T Consensus 198 cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~----- 272 (355)
T KOG0033|consen 198 CGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICN----- 272 (355)
T ss_pred hhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcc-----
Confidence 344566777774 45553222 223333222113556678888999998888877777788887776532
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240 126 EKDLKNVVDLITSPQVQKGLGLYLQSLK 153 (155)
Q Consensus 126 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
.+.....+.-+|+.+-++.|-++||
T Consensus 273 ---r~~~As~~H~~dtvd~lrkfNarRK 297 (355)
T KOG0033|consen 273 ---RERVASAIHRQDTVDCLKKFNARRK 297 (355)
T ss_pred ---hHHHHHHhhhHHHHHHHHHhhHHHH
Confidence 2233344445677777888877665
No 166
>KOG4569|consensus
Probab=22.22 E-value=49 Score=26.21 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCcccchHHHHHHhhcceeeeec----Cceeeeccccccc
Q psy15240 1 MKGHAPGAGCQFAMSCEYRIMVG----PKYTIGLNETKMG 36 (155)
Q Consensus 1 v~G~a~GgG~~la~~cD~~ia~~----~~a~~~~~e~~~G 36 (155)
|.||..||.+....+.|++.-.- .-..+++.+.++|
T Consensus 175 vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PRvG 214 (336)
T KOG4569|consen 175 VTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPRVG 214 (336)
T ss_pred EecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCcc
Confidence 46999999999999999986440 2245556666665
No 167
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.36 E-value=1.9e+02 Score=24.37 Aligned_cols=15 Identities=7% Similarity=0.328 Sum_probs=12.2
Q ss_pred cCHHHHHHHHHHHhh
Q psy15240 137 TSPQVQKGLGLYLQS 151 (155)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (155)
.+++.++++.+|++.
T Consensus 474 ~~~~G~~af~rFi~~ 488 (489)
T TIGR01239 474 QTAEGKQGFRKFIDF 488 (489)
T ss_pred cCHhHHHHHHHHHHh
Confidence 678899999999863
Done!