RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15240
(155 letters)
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 109 bits (274), Expect = 3e-30
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G+A G G + A++C+YRI GL E K+GII + +G L
Sbjct: 97 VNGYALGGGLELALACDYRIA-ADNAKFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEML 155
Query: 61 TSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
+G+ + EALK+GL+D+ V E EEAI A+ + A P A K +R
Sbjct: 156 LTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQ----RLADKPPLALAALKAAMRAAL 211
Query: 118 ISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151
L E + + L+ ++ V++G+ +L+
Sbjct: 212 EDALPEVRAQALRLYPAPFSTDDVKEGIQAFLEK 245
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 84.5 bits (210), Expect = 4e-21
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELA 59
+ G A G G + A++C+ RI GL E K+G++ + +GP + EL
Sbjct: 100 VNGAALGGGLELALACDIRIA-AEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97
LT G+ ++ EAL++GL+D EV +EE + A +
Sbjct: 159 LT-GRRISAEEALELGLVD-EVVPDEELLAAALELARR 194
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 83.8 bits (207), Expect = 3e-20
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP-FWFVDTMVHTLGPRQTELA 59
++G P GC ++ C+YR+ + T+GLNE +GI P FW M + + E
Sbjct: 114 IRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESL 172
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L G++ AEA ++GLID EV + A + + + +P AAR TK +LRE
Sbjct: 173 LLRGRLVRPAEAKQLGLID-EVVPAAALMEAAASAMERALKLPSAARAATKALLRE 227
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 77.8 bits (192), Expect = 4e-18
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELA 59
+ G+A G G + A++C+ RI GL E +G++ + LG + EL
Sbjct: 105 VNGYALGGGLELALACDIRIAA-EDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELL 163
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
LT G+ ++AEAL++GL+DE V EE + RA + A P A TK ++R +
Sbjct: 164 LT-GEPISAAEALELGLVDEVVPDAEELLERALELARRLA-APPLALAATKRLVRAALEA 221
Query: 120 NLMENKEKDLKNVVDLITSPQVQKGL 145
+L E E + L +S ++G+
Sbjct: 222 DLAEALEAEALAFARLFSSEDFREGV 247
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 61.1 bits (149), Expect = 4e-12
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
GHA G +S +YRI V + IGLNE +G+ P ++ L P + A+ +
Sbjct: 100 GHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVIN 159
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
+MF EA+ G +D EV E+ + RA+ + A + A TKL +R + +
Sbjct: 160 AEMFDPEEAVAAGFLD-EVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIR 218
Query: 123 ENKEKDL 129
E D
Sbjct: 219 AAIEGDA 225
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 58.3 bits (142), Expect = 1e-10
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR- 54
+ G+A G GC+ ++ +YR+ P IGL ETK+GI+ F G PR
Sbjct: 109 INGYALGGGCECVLATDYRVA-SPDARIGLPETKLGIMPGF----------GGTVRLPRL 157
Query: 55 -QTELAL---TSGKMFTSAEALKVGLIDEEVTSEE 85
+ AL +GK + +ALKVG +D V E+
Sbjct: 158 IGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 56.0 bits (135), Expect = 8e-10
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G A G GC+ ++ ++RI IGL ETK+GI+ F + +G +
Sbjct: 109 INGIALGGGCECVLATDFRIA-DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWI 167
Query: 61 TSGKMFTSAEALKVGLIDEEVTSE 84
SGK + +ALKVG +D VT++
Sbjct: 168 ASGKENRAEDALKVGAVDAVVTAD 191
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 51.2 bits (123), Expect = 2e-08
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
++G+ G G A++C+ RI G+ ++G+ + V +V +GP +
Sbjct: 113 IRGYCIGGGMGIALACDIRI-AAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF 171
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQY-ATIPGAARKLT----KLMLRE 115
+ + F +AEAL++GL+ +++ ET LA Y ATI G A LT K + E
Sbjct: 172 YTARRFDAAEALRIGLVHRVTAADD-----LETALADYAATIAGNA-PLTLRAAKRAIAE 225
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 50.1 bits (120), Expect = 4e-08
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PR-QTELAL 60
GHA AG A+S +Y +M + + ++E +G+ P +F+ + +G P + ++ L
Sbjct: 103 GHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLL 162
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
+ K+ T+ EA+++G++D S EE + A
Sbjct: 163 RAAKL-TAEEAVEMGIVDSAHDSAEETVEAA 192
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 48.5 bits (116), Expect = 2e-07
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
G+A G GC+ AM + I+ G + G E K+G++ +V +G + +
Sbjct: 107 GYALGGGCELAMHADI-IVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALT 165
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAA 105
G M + EAL +GL+ EV +E+ + RA + A +P A
Sbjct: 166 GCMVPAPEALAIGLV-SEVVEDEQTLPRALELAREIARMPPLA 207
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 48.1 bits (115), Expect = 3e-07
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
G A G G + AMSC R +GL E +G+I F + +G + E+ LT
Sbjct: 103 GAALGGGLELAMSCHIRF-ATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLT 161
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT 100
S + T AEALK GL+ V EE + A+ + A
Sbjct: 162 S-EPITGAEALKWGLV-NGVFPEETLLDDAKKLAKKIAG 198
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 48.0 bits (115), Expect = 3e-07
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP----FWFVDTMVHTLG-PRQTE 57
G A GAGC A C+ RI + K+G+I P W + +G R E
Sbjct: 112 GPAIGAGCDLACMCDIRI-ASETARFAESFVKLGLI-PGDGGAWL---LPRIIGMARAAE 166
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE-- 115
+A T G +A AL+ GL+ V ++ + A + A P A +LTK +LRE
Sbjct: 167 MAFT-GDAIDAATALEWGLV-SRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQ 224
Query: 116 -KTISNLME 123
++ L+E
Sbjct: 225 HASLDTLLE 233
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 45.9 bits (109), Expect = 1e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
G A G GC+ +M+C+ RI K G E +GI F + +GP + + + +
Sbjct: 106 GFALGGGCELSMACDIRI-ASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYT 164
Query: 63 GKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQ 97
G M + EAL++GL+++ V E EEA A A
Sbjct: 165 GDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 45.6 bits (109), Expect = 2e-06
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G G A++C+ L K+G+ + ++ G R E+
Sbjct: 105 GPAVGVGVSLALACDLVY-ASESAKFSLPFAKLGLCPDAGGSALLPRLI---GRARAAEM 160
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
L G+ ++ EAL++GL++ V E A+ A+ A P +A + TK + T+
Sbjct: 161 LLL-GEPLSAEEALRIGLVN-RVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATL 218
Query: 119 SNL 121
+ L
Sbjct: 219 TEL 221
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 39.7 bits (93), Expect = 2e-04
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP----FWFVDTMVHTLGPRQTEL 58
G A GAG A++ + RI GPK K+G + P W + +GP+
Sbjct: 104 GAAVGAGLNLALAADVRI-AGPKALFDARFQKLG-LHPGGGATWM---LQRAVGPQVARA 158
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLR 114
AL G F + A++ GL ++ + A A A P TK +R
Sbjct: 159 ALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAPRELVLATKASMR 211
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 39.0 bits (91), Expect = 4e-04
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
G+A GAGC+ A+ C+ ++ G GL E +GI+ ++ ++G +++ LT
Sbjct: 101 GYALGAGCELALLCDI-VIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLT 159
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLR 114
G+ T+ +A + GL+ EV E + RA ++ A A + K LR
Sbjct: 160 -GESITAQQAQQAGLV-SEVFPPELTLERALQLASKIARHSPLALRAAKQALR 210
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 38.9 bits (91), Expect = 4e-04
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
G A G G + A++C+ I+ T L E ++G+ A + + +G ++ + +
Sbjct: 103 GVAMGGGFELALACDL-IVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILT 161
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAE 92
G+ T+ E L++G ++ EV E + AE
Sbjct: 162 GRRVTAREGLELGFVN-EVVPAGELLAAAE 190
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 38.4 bits (90), Expect = 5e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 29 GLNETKMGI----IAPFWFVDTMVHTLGPRQ-TELALTSGKMFTSAEALKVGLIDEEVTS 83
L+E ++G+ I+P+ ++ +G R LT + F +AEAL++GL+ E V +
Sbjct: 133 CLSEVRLGLIPATISPY-----VIRAMGERAARRYFLT-AERFDAAEALRLGLVHEVVPA 186
Query: 84 EE 85
E
Sbjct: 187 EA 188
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 37.5 bits (87), Expect = 0.001
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
G+A GAG A++ ++R+ G G E G+ + + GP + + + S
Sbjct: 108 GYALGAGLTLALAADWRVS-GDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFS 166
Query: 63 GKMFTSAEALKVGLIDEEVTSE---EEAITRAETFL 95
G+ F + EAL +GLIDE V + + A A FL
Sbjct: 167 GRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFL 202
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 37.3 bits (87), Expect = 0.001
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL 121
GK ++ EAL +GLIDE + T A+ ++++ P A TK + E S L
Sbjct: 165 EGKKLSATEALDLGLIDE--VIGGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQL 222
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 37.0 bits (86), Expect = 0.002
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELA 59
+ G A G G + A++C++RI ++GL ET + II + +G R EL
Sbjct: 104 INGIALGGGLELALACDFRIAA-ESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI 162
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA 99
T G+ ++ EA ++GL+ E V +A + A
Sbjct: 163 YT-GRRISAQEAKEIGLV-EFVVPAHLLEEKAIEIAEKIA 200
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 37.0 bits (86), Expect = 0.002
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQTEL 58
G A G G C+ I V GL ET++G+ I+P+ +V +G
Sbjct: 109 GQAFGGGVGLISVCDVAIAV-SGARFGLTETRLGLIPATISPY-----VVARMGEANARR 162
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEE-EAITRAETFLAQY-ATIPGAARKLTKLMLR-- 114
S ++F + EA+++GL+ V +E +A AE + Y + PGA L+
Sbjct: 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAE--VTPYLSCAPGAVAAAKALVRALG 220
Query: 115 --------EKTISNLMENKEKD 128
+ TI L + E +
Sbjct: 221 APIDEAVIDATIEALADTWETE 242
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 35.8 bits (83), Expect = 0.004
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT------LGPR 54
+ G G G + A +C+ RI G+ E ++GI P +++H +G
Sbjct: 107 IPGWCLGGGLELAAACDLRI-AAHDAQFGMPEVRVGI--P-----SVIHAALLPRLIGWA 158
Query: 55 QTELALTSGKMFTSAEALKVGLIDEEVTSEE--EAITRAETFLAQYATIPGAARKLTKLM 112
+T L +G+ +A+AL GL+D V E A+ R LA P A R+ K +
Sbjct: 159 RTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG--PQALRQ-QKRL 215
Query: 113 LRE 115
LRE
Sbjct: 216 LRE 218
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 34.9 bits (81), Expect = 0.010
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 35 MGIIAPFWFVDTMVHT--LGPRQT-ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
MGI V+ H LGPR+ EL T G T+ EA ++G+++ V +E
Sbjct: 158 MGIPG----VEYFAHPWELGPRKAKELLFT-GDRLTADEAHRLGMVN-RVVPRDELEAET 211
Query: 92 ETFLAQYATIPGAARKLTK 110
+ A +P +LTK
Sbjct: 212 LELARRIAAMPPFGLRLTK 230
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 34.4 bits (79), Expect = 0.014
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELA 59
++G A G G + A+SC+ RI G + GL ET + II + +G R EL
Sbjct: 95 VEGAALGGGLELALSCDLRI-CGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELI 153
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEE 85
T G+ + EA +GL++ V + E
Sbjct: 154 FT-GRRIGAREAASMGLVNYCVPAGE 178
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 34.2 bits (79), Expect = 0.014
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
G+A G GC+ AM C+ I+ G E K+G++ + +G + +L LT
Sbjct: 103 GYALGGGCELAMMCDI-IIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLT 161
Query: 62 SGKMFTSAEALKVGLIDEEVTSE---EEAITRAET 93
G+M +AEA + GL+ V ++ +EA+ A T
Sbjct: 162 -GRMMDAAEAERAGLVSRVVPADKLLDEALAAATT 195
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 33.4 bits (77), Expect = 0.030
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 27/124 (21%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYT------IGLNETKMG-------IIAPFWFVDTMVH 49
G GAG AM+ + R+ T +GL MG II
Sbjct: 122 GVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIG---------- 171
Query: 50 TLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLT 109
G R +EL L +G+ ++ E + G + + EE + A+ + A P A +T
Sbjct: 172 -QG-RASEL-LYTGRSMSAEEGERWGFFN-RLVEPEELLAEAQALARRLAAGPTFAHGMT 227
Query: 110 KLML 113
K ML
Sbjct: 228 KTML 231
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 33.1 bits (76), Expect = 0.035
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
+ GH G +C+ I+V GP+ T L E ++G+ AP T++ L PR
Sbjct: 108 IDGHVRAGGFGLVGACD--IVVAGPESTFALTEARIGV-APAIISLTLLPRLSPRAAARY 164
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITR 90
+G+ F +AEA ++GL+ + A+
Sbjct: 165 YLTGEKFGAAEAARIGLVTAAADDVDAAVAA 195
>gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49.
Length = 149
Score = 32.2 bits (74), Expect = 0.051
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET 93
+ G+++T +A++ GL+D E+ + ++AI R
Sbjct: 112 IAEGRVWTGQQAVEAGLVD-ELGTLDDAIARLAE 144
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 32.7 bits (75), Expect = 0.059
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 27 TIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEE- 85
GL+E GI M T+G R + +G+ FT +A ++GL++E V +
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQL 195
Query: 86 EAITRA 91
A TR
Sbjct: 196 RARTRE 201
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 32.3 bits (74), Expect = 0.081
Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 27/137 (19%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI-IAPFWFVDTM------------ 47
+ G G G A +C+ RI + G IA T+
Sbjct: 109 IAGACVGGGAAIAAACDLRI--------ATPSARFGFPIA-----RTLGNCLSMSNLARL 155
Query: 48 VHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARK 107
V LG + + L + ++ + EAL GL+ EV + RA+ A +
Sbjct: 156 VALLGAARVKDMLFTARLLEAEEALAAGLV-NEVVEDAALDARADALAELLAAHAPLTLR 214
Query: 108 LTKLMLREKTISNLMEN 124
TK LR L +
Sbjct: 215 ATKEALRRLRREGLPDG 231
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 31.5 bits (71), Expect = 0.13
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
++G G G + A + + P +G E +G+ AP + +G E L
Sbjct: 96 VRGQCLGGGLEVAAAGNL-MFAAPDAKLGQPEIVLGVFAPAASC-LLPERMGRVAAEDLL 153
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITR 90
SG+ AE ++GL + E A
Sbjct: 154 YSGRSIDGAEGARIGLANAVAEDPENAALA 183
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 31.2 bits (71), Expect = 0.15
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 3 GHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQTEL 58
G G G A+ C+ R G K+T + G+IA W + +V G
Sbjct: 117 GACAGIGLTHALMCDVRFAADGAKFTTAF--ARRGLIAEHGISWILPRLV---GHANALD 171
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEE 85
L S + F + EAL++GL++ V +E
Sbjct: 172 LLLSARTFYAEEALRLGLVNRVVPPDE 198
>gnl|CDD|206455 pfam14287, DUF4368, Domain of unknown function (DUF4368). This
domain family is found in bacteria, and is approximately
70 amino acids in length. The family is found in
association with pfam00239 and pfam07508. There is a
single completely conserved residue G that may be
functionally important.
Length = 71
Score = 29.5 bits (67), Expect = 0.17
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 79 EEVTSEEEAITRAETFLA---QYATIPGAARKLTKLMLRE 115
+E++ E+ A+ FLA +Y I +LT ML E
Sbjct: 1 QELSEYEQQTVDADRFLALVRKYTDIE----ELTPTMLNE 36
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 30.8 bits (70), Expect = 0.19
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
G+A G G + A++ ++ I+ + L E K+GI+ V + L P + +
Sbjct: 103 GYAFGGGFELALAADF-IVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMT 161
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
G+ + EAL+ G+++ V + E + RA Q A K + RE
Sbjct: 162 GRRMDAEEALRWGIVN-RVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRE 213
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 30.7 bits (70), Expect = 0.22
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 7 GAGCQFAMSCEYRIMVGPKYTIGLNETKMGII---APFWFVDTMVHTLGPRQTELALT-S 62
GA AM + R+ G + GI+ A WF+ +V G QT L S
Sbjct: 128 GATMTLAM--DIRLA-STAARFGFVFGRRGIVPEAASSWFLPRLV---GL-QTALEWVYS 180
Query: 63 GKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTKLML 113
G++F + EAL GL+ +E A A + + A LT+ M+
Sbjct: 181 GRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA---LTRQMM 231
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 30.6 bits (70), Expect = 0.26
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 42 WFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITR 90
FV + G + T G +F EA+ GL D V + ++A+
Sbjct: 165 MFVAAVARNRGLSAAAVRATEGGVFRGQEAVAAGLAD-AVGTLDDALAA 212
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 30.3 bits (69), Expect = 0.31
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
L +G F + EAL++GL+ +EV E + RA
Sbjct: 157 LLTGDEFDAQEALRLGLV-QEVVPPGEQLERA 187
>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine
protease, has catalytic Ser-Lys dyad. Signal peptide
peptidase A (SppA; Peptidase S49; Protease IV): SppA is
found in all three domains of life and is involved in
the cleavage of signal peptides after their removal from
the precursor proteins by signal peptidases. This
subfamily contains members with either a single domain
(sometimes referred to as 36K type), such as sohB
peptidase, protein C and archaeal signal peptide
peptidase, or an amino-terminal domain in addition to
the carboxyl-terminal protease domain that is conserved
in all the S49 family members (sometimes referred to as
67K type), similar to E. coli and Arabidopsis thaliana
SppA peptidases. Site-directed mutagenesis and sequence
analysis have shown these SppAs to be serine proteases.
The predicted active site serine for members in this
family occurs in a transmembrane domain. Mutagenesis
studies also suggest that the catalytic center comprises
a Ser-Lys dyad and not the usual Ser-His-Asp catalytic
triad found in the majority of serine proteases.
Interestingly, the single membrane spanning E. coli SppA
carries out catalysis using a Ser-Lys dyad with the
serine located in the conserved carboxy-terminal
protease domain and the lysine in the non-conserved
amino-terminal domain.
Length = 208
Score = 30.1 bits (69), Expect = 0.31
Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAE 92
G+++T +AL++GL+D E+ ++AI +A
Sbjct: 180 GRVWTGRQALELGLVD-ELGGLDDAIAKAA 208
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 30.4 bits (69), Expect = 0.33
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI 37
G A GAG Q AM+C+ R+ V P+ K GI
Sbjct: 95 GPAIGAGLQLAMACDLRV-VAPEAYFQFPVAKYGI 128
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 30.2 bits (69), Expect = 0.35
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFW-FVDTMVHTLGPRQT----- 56
G G G Q A+ + RI +TK+ I+ W V M T+ R
Sbjct: 111 GVCFGGGLQIALGADIRIAA--------PDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDV 162
Query: 57 --ELALTSGKMFTSAEALKVGLI 77
EL T ++F++ EAL++GL+
Sbjct: 163 ARELTYT-ARVFSAEEALELGLV 184
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 30.2 bits (68), Expect = 0.45
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 7 GAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKM 65
G G + A++C R+ K +GL E ++G++ + +G + +GK
Sbjct: 109 GGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 168
Query: 66 FTSAEALKVGLIDEEV 81
+ +ALK+GL+D+ V
Sbjct: 169 LRAKQALKLGLVDDVV 184
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 30.2 bits (68), Expect = 0.46
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTI-GLNETKMGIIAPFWFVDTMVHTLG-PRQTELAL 60
G G G + A++C YRI + T+ GL E +G++ + G P ++ L
Sbjct: 117 GSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMML 176
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQY--ATIPGAARKLTKLMLREKTI 118
T GK + A K+G++D+ V + AE +Y A+ L L
Sbjct: 177 T-GKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRD 235
Query: 119 SNLME 123
L+
Sbjct: 236 KGLVH 240
>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class)
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 317
Score = 29.3 bits (66), Expect = 0.74
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 42 WFVDTMVHTLGPRQTEL-ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT 100
FVD + G + L +G+++T +AL++GL+DE ++ AE +
Sbjct: 220 EFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDVP 279
Query: 101 IP 102
+
Sbjct: 280 VV 281
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 29.1 bits (65), Expect = 0.81
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELA 59
+ G G G +C+ R + + E + I A + + +G ELA
Sbjct: 118 IHGACIGGGVDIVTACDIRYCSEDAF-FSVKEVDLAITADLGTLQRLPSIVGYGNAMELA 176
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEE 86
LT G+ F+ +EA ++GL+ S+E+
Sbjct: 177 LT-GRRFSGSEAKELGLVSRVFGSKED 202
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 29.2 bits (66), Expect = 0.87
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 57 ELALTSGKMFTSAEALKVGLIDE 79
ELALT G+ +AEA K+GL++
Sbjct: 172 ELALT-GRDIDAAEAEKIGLVNR 193
>gnl|CDD|220243 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. This is the N
terminal domain of subunit 6 translation initiation
factor eIF3.
Length = 133
Score = 28.4 bits (64), Expect = 0.92
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 85 EEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLK 130
E + + L + + +TKL+ + I NL +K+ +L+
Sbjct: 65 AELAAKRQEVLKELQELQEEVAPITKLLEDPEVIKNLRSDKKANLE 110
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 28.8 bits (64), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEE-EAITRAETFLAQYATIPGAARKLTKLMLRE 115
+LT G+ T +A + LI+E V E EA R + A IP + + KL++ +
Sbjct: 174 SLT-GRPLTGVQAAEAELINEAVPFERLEA--RVAEVATELARIPLSQLQAQKLIVNQ 228
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 28.9 bits (65), Expect = 1.1
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 120 NLMENKEKD-------LKNVVDLITSPQVQKGLGLYLQSLK 153
N M+N + D I +P V++ L LQ+ K
Sbjct: 466 NFMQNINDSQLLPKINITKAKDEILNPVVKRAL---LQARK 503
>gnl|CDD|216105 pfam00761, Polyoma_coat2, Polyomavirus coat protein.
Length = 322
Score = 28.7 bits (64), Expect = 1.2
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 59 ALTSGKMFTSAEALKVGLIDEE-VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
A+ +G+ F + EA L E V S EA+ +A + A L +T
Sbjct: 27 AILAGEAFAAIEAQIASLATVEGVLSTSEALAAIGLTPEAFAVLQAAPTALAGFAALFQT 86
Query: 118 IS 119
++
Sbjct: 87 VT 88
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT +H + P+Q E AL SG
Sbjct: 132 IDTHIHFICPQQIEEALASG 151
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 28.7 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 27/89 (30%)
Query: 7 GAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLG-------PR---- 54
G G + A++C YR+ PK +GL E ++G++ G PR
Sbjct: 114 GGGLELALACHYRVCTDDPKTVLGLPEVQLGLLP------------GSGGTQRLPRLIGV 161
Query: 55 QT--ELALTSGKMFTSAEALKVGLIDEEV 81
T ++ LT GK + +ALK+GL+D+ V
Sbjct: 162 STALDMILT-GKQLRAKQALKLGLVDDVV 189
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 28.2 bits (64), Expect = 2.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT +H + P+Q E AL SG
Sbjct: 132 IDTHIHFICPQQIEEALASG 151
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 27.8 bits (62), Expect = 2.3
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
G A G GC+ + I + E ++G+ F + G R EL LT
Sbjct: 109 GLAFGGGCEITEAVHLAI-ASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLT 167
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE 85
G F++ AL++GL++ V EE
Sbjct: 168 -GDAFSAERALEIGLVNAVVPHEE 190
>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
related but duplicated, double-length protein SppA
(protease IV) of E. coli was shown experimentally to
degrade signal peptides as are released by protein
processing and secretion. This protein shows stronger
homology to the C-terminal region of SppA than to the
N-terminal domain or to the related putative protease
SuhB. The member of this family from Bacillus subtilis
was shown to have properties consistent with a role in
degrading signal peptides after cleavage from precursor
proteins, although it was not demonstrated conclusively
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 208
Score = 27.3 bits (61), Expect = 2.8
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET 93
G++FT +ALK+ L+D ++ +E++AI +
Sbjct: 173 FADGRVFTGRQALKLRLVD-KLGTEDDAIKWLKK 205
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 27.6 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 57 ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAAR 106
++LT G +A+AL+ GL+ EV +E + RA A A AA
Sbjct: 157 RMSLT-GDFLDAADALRAGLVT-EVVPHDELLPRARRLAASIAGNNPAAV 204
>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl
transferase. Shigella flexneri RfbF protein is a
putative dTDP-rhamnosyl transferase. dTDP rhamnosyl
transferases of Shigella flexneri add rhamnose sugars
to N-acetyl-glucosamine in the O-antigen tetrasaccharide
repeat. Lipopolysaccharide O antigens are important
virulence determinants for many bacteria. The variations
of sugar composition, the sequence of the sugars and the
linkages in the O antigen provide structural diversity
of the O antigen.
Length = 237
Score = 27.2 bits (61), Expect = 2.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 21 MVGPKYT-IGLNETKMGIIAPFWFVDTMVHTL-GPRQTELALTSGKMFTSAEAL-KVGLI 77
VGP+ E G+ + + G ++ + +TSG S EAL KVG
Sbjct: 111 AVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSG-SLISLEALEKVGGF 169
Query: 78 DEE 80
DE+
Sbjct: 170 DED 172
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 27.3 bits (61), Expect = 3.2
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP-FWFVDT--M-VHTLGPRQTEL 58
G+ G A+ C+ I ++ K+G W V M + LGP++ +
Sbjct: 136 GYCVAGGTDIALHCDQVIAA--------DDAKIGYPPTRVWGVPATGMWAYRLGPQRAKR 187
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEE-EAITRAETFLAQYATIPGAARKLTKLML 113
L +G T A+A + GL E V EE + R E + + A +P + KL +
Sbjct: 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDE--RTERLVERIAAVPVNQLAMVKLAV 241
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 27.2 bits (60), Expect = 3.2
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
++G+A G G C+ I K G K+G + P + + +G ++
Sbjct: 101 VQGYAIGGGNVLVTICDLTI-ASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIW 159
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEE 85
+ +T+ EAL +GL++ V ++
Sbjct: 160 YLCRRYTAQEALAMGLVNAVVPHDQ 184
>gnl|CDD|236446 PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.
Length = 879
Score = 27.4 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 62 SGKMFTSAEALK--VGLIDEEVTSEEEAITR 90
+GK T+ A+K V +++E + ++EEA+ R
Sbjct: 342 NGKR-TAKAAVKIAVDMVEEGLITKEEAVLR 371
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 27.1 bits (61), Expect = 3.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITR 90
AL ++ EAL+ GL+D + +E R
Sbjct: 189 ALIDLGGDSAEEALEAGLVD-GLAYRDELEAR 219
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 27.3 bits (61), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT VH + P+Q E AL SG
Sbjct: 132 IDTHVHFICPQQIEEALASG 151
>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk,
3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic
clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the
first step of isopentenyl pyrophosphate (IPP)
biosynthesis via the mevalonate pathway. This pathway
is found mainly in eukaryotes, but also in archaea and
some bacteria. This model is specific for eukaryotes.
Length = 457
Score = 27.0 bits (60), Expect = 4.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 25 KYTIGLNETKMG 36
KYTIGL +TKMG
Sbjct: 34 KYTIGLGQTKMG 45
>gnl|CDD|234917 PRK01198, PRK01198, V-type ATP synthase subunit C; Provisional.
Length = 352
Score = 27.1 bits (61), Expect = 4.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 85 EEAITR--AETFLAQYATIPGAARKLTKLMLREKTISNLM 122
E+A+ R A+T+ PG ++L + LR+ I N+
Sbjct: 70 EKALNRNLAKTYELLLEISPGRLKELVDVYLRKWDIHNIK 109
>gnl|CDD|132931 cd07020, Clp_protease_NfeD_1, Nodulation formation efficiency D
(NfeD) is a membrane-bound ClpP-class protease.
Nodulation formation efficiency D (NfeD; stomatin operon
partner protein, STOPP; DUF107) is a member of
membrane-anchored ClpP-class proteases. Currently, more
than 300 NfeD homologs have been identified - all of
which are bacterial or archaeal in origin. Majority of
these genomes have been shown to possess operons
containing a homologous NfeD/stomatin gene pair, causing
NfeD to be previously named STOPP (stomatin operon
partner protein). NfeD homologs can be divided into two
groups: long and short forms. Long-form homologs have a
putative ClpP-class serine protease domain while the
short form homologs do not. Downstream from the
ClpP-class domain is the so-called NfeD or DUF107
domain. N-terminal region of the NfeD homolog PH1510
(1510-N or PH1510-N) from Pyrococcus horikoshii has been
shown to possess serine protease activity and has a
Ser-Lys catalytic dyad, preferentially cleaving
hydrophobic substrates. Difference in oligomeric form
and catalytic residues between 1510-N (forming a dimer)
and ClpP (forming a tetradecamer) shows a possible
functional difference: 1510-N is likely to have a
regulatory function while ClpP is involved in protein
quality control.
Length = 187
Score = 26.7 bits (60), Expect = 4.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 57 ELALTSGKMFTSAEALKVGLID 78
E A+ T+ EALK+G+ID
Sbjct: 139 EKAVRESLSLTAEEALKLGVID 160
>gnl|CDD|222366 pfam13764, E3_UbLigase_R4, E3 ubiquitin-protein ligase UBR4. This
is a family of E## ubiquitin ligase enzymes.
Length = 794
Score = 26.9 bits (60), Expect = 5.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 79 EEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKN 131
E+V+SEE T AE L A G A+K+ +R++T E + +
Sbjct: 381 EQVSSEEHIGTLAENLLETLAEKEGVAKKID--EVRDET---RAEKRRLAMAM 428
>gnl|CDD|219238 pfam06953, ArsD, Arsenical resistance operon trans-acting repressor
ArsD. This family consists of several bacterial
arsenical resistance operon trans-acting repressor ArsD
proteins. ArsD is a trans-acting repressor of the
arsRDABC operon that confers resistance to arsenicals
and antimonials in Escherichia coli. It possesses
two-pairs of vicinal cysteine residues, Cys(12)-Cys(13)
and Cys(112)-Cys(113), that potentially form separate
binding sites for the metalloids that trigger
dissociation of ArsD from the operon. However, as a
homodimer it has four vicinal cysteine pairs.
Length = 120
Score = 26.0 bits (58), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 69 AEALKVGLIDEEVTSEEEAITRAETFLAQYATIP 102
AE L + L+D E+ TR E LA++A I
Sbjct: 70 AEGLPLTLVDGEIVKTGRYPTREE--LARWAGIT 101
>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN);
Provisional.
Length = 122
Score = 25.8 bits (56), Expect = 7.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 93 TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVD 134
TFL A IP A + K +L+E + ENKEK+ K +D
Sbjct: 41 TFLTSTAAIPEAGSESRKALLQE-YLKKSEENKEKNDKERLD 81
>gnl|CDD|219485 pfam07606, DUF1569, Protein of unknown function (DUF1569). A
family of hypothetical proteins identified in
Rhodopirellula baltica.
Length = 152
Score = 26.2 bits (58), Expect = 7.1
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 40 PFWFVDTMVHTLGPRQTELALTSGKMFTSAEALK-------VGLIDEEVTSE-EEAITRA 91
PFW T+G L GKM + L D E E+ITR
Sbjct: 54 PFWKPALFARTVGKLAFLPFLLKGKMSHPLDEPIPGSFVPPADLDDAEALERLIESITRF 113
Query: 92 ETFLAQYATIPGAARKLTKLMLRE 115
+ + + A P A +LTK
Sbjct: 114 KAYDGELAPHP-AFGELTKEEYEL 136
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A
synthase N terminal.
Length = 171
Score = 26.0 bits (57), Expect = 7.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 25 KYTIGLNETKMGI 37
KYTIGL +TKMG
Sbjct: 31 KYTIGLGQTKMGF 43
>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
Length = 346
Score = 26.4 bits (58), Expect = 7.7
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 49 HTLGPRQTELALTSGKMF--------TSAEALKVGL------IDEEVTSEEEAITRAETF 94
H L P Q LA + F T+ E LK + + EEV +E EA+ + T+
Sbjct: 284 HGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQVYTY 343
Query: 95 LA 96
A
Sbjct: 344 PA 345
>gnl|CDD|132932 cd07021, Clp_protease_NfeD_like, Nodulation formation efficiency D
(NfeD) is a membrane-bound ClpP-class protease.
Nodulation formation efficiency D (NfeD; stomatin operon
partner protein, STOPP; DUF107) is a member of
membrane-anchored ClpP-class proteases. Currently, more
than 300 NfeD homologs have been identified - all of
which are bacterial or archaeal in origin. Majority of
these genomes have been shown to possess operons
containing a homologous NfeD/stomatin gene pair, causing
NfeD to be previously named STOPP (stomatin operon
partner protein). NfeD homologs can be divided into two
groups: long and short forms. Long-form homologs have a
putative ClpP-class serine protease domain while the
short form homologs do not. Downstream from the
ClpP-class domain is the so-called NfeD or DUF107
domain. N-terminal region of the NfeD homolog PH1510
(1510-N or PH1510-N) from Pyrococcus horikoshii has been
shown to possess serine protease activity and has a
Ser-Lys catalytic dyad, preferentially cleaving
hydrophobic substrates. Difference in oligomeric form
and catalytic residues between 1510-N (forming a dimer)
and ClpP (forming a tetradecamer) shows a possible
functional difference: 1510-N is likely to have a
regulatory function while ClpP is involved in protein
quality control.
Length = 178
Score = 25.6 bits (57), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 66 FTSAEALKVGLIDEEVTSEEEAITR 90
T+ EALKVG + S +E + +
Sbjct: 154 LTADEALKVGYAEGIAGSLDELLVK 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,591,789
Number of extensions: 679825
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 99
Length of query: 155
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 66
Effective length of database: 6,990,096
Effective search space: 461346336
Effective search space used: 461346336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)