RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15240
(155 letters)
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 122 bits (309), Expect = 2e-35
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 3 GHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALT 61
G P GC A++C+YRI+ P+Y IGLNET++GIIAPFW DT+ +T+G R E AL
Sbjct: 106 GACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQ 165
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL 121
G +F AEAL+VG++D +V EE+ + A + +AQ+ IP AR+LTK M+R+ T S L
Sbjct: 166 LGLLFPPAEALQVGIVD-QVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL 224
Query: 122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
+ ++ D++N V I+ +QK L +YL+ LK++
Sbjct: 225 VTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 258
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 111 bits (279), Expect = 3e-31
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
GHA G +S +YRI V ++IGLNE ++G+ ++ L ++ +
Sbjct: 103 GHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVIN 162
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
+MF A+ G +D +V S EE A AQ I A K TKL +R+ + L
Sbjct: 163 AEMFDPEGAMAAGFLD-KVVSVEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLD 221
Query: 123 ENKEKDLKNVV 133
E+D ++++
Sbjct: 222 AAIEQDRQHML 232
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 80.7 bits (200), Expect = 1e-19
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
GHA G S ++R+ Y + NE +G+ P+ ++ + L P + A
Sbjct: 104 GHAIAMGAFLLCSGDHRVA-AHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL 162
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
K F AL G ID E++ E ++RAE ++A + A TKL R
Sbjct: 163 -AKTFFGETALAAGFID-EISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARA 214
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 67.9 bits (166), Expect = 2e-14
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G+ G A+ + I IG ++ + H LG ++ L T
Sbjct: 166 GYCVAGGTDIALHADQVIA-AADAKIGYPPMRVWGVPAAGL---WAHRLGDQRAKRLLFT 221
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
G T A+A + GL E + R E + + A +P + KL
Sbjct: 222 -GDCITGAQAAEWGLAV-EAPDPADLDARTERLVERIAAMPVNQLIMAKLACNT 273
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 63.0 bits (154), Expect = 7e-13
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQT-E 57
G G F + + I + L+E G+ + PF ++ +G ++
Sbjct: 109 GKVNAGGLGFVSATDIAI-ADQTASFSLSELLFGLYPACVLPF-----LIRRIGRQKAHY 162
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
+ L K + EA + GLID + L + + K +
Sbjct: 163 MTLM-TKPISVQEASEWGLIDAFDAESDVL---LRKHLLRLRRLNKKGIAHYKQFMSS 216
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 60.3 bits (147), Expect = 7e-12
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G GC A++C+ + P L T++G++ + +G R + +
Sbjct: 101 GAAVGFGCSLALACDLVVA-APASYFQLAFTRVGLMPDGGASAL---LPLLIGRARTSRM 156
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
A+T + ++A A + G+I +TS +E + L + P A TK L
Sbjct: 157 AMT-AEKISAATAFEWGMIS-HITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAA 211
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 59.9 bits (146), Expect = 9e-12
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A GAG A+ + R+ + ++G++ + + +G + EL
Sbjct: 100 GVAAGAGMSLALWGDLRLA-AVGASFTTAFVRIGLVPDSGLSFL---LPRLVGLAKAQEL 155
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L ++ EAL +GL+ V E+ + A + + A P A LTK +L E
Sbjct: 156 LLL-SPRLSAEEALALGLVH-RVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLE 210
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 59.5 bits (145), Expect = 1e-11
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G GAG +C++R P+ + K G++ +G Q + +
Sbjct: 107 GRNFGAGVDLFAACKWRYC-TPEAGFRMPGLKFGLVLGTRRF---RDIVGADQALSILGS 162
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
+ F + EA ++G + + ++ + + + A R +LR+
Sbjct: 163 -ARAFDADEARRIGFVR-DCAAQAQWPALIDAAAEAATALDPATRATLHRVLRD 214
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 59.1 bits (144), Expect = 2e-11
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G+A G G ++C+ RI + N KMGI +F + +G + L
Sbjct: 110 GYAYGGGFNMMLACDRRIA-LRRAKFLENFHKMGISPDLGASYF---LPRIIGYEQTMNL 165
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L GK+FTS EAL++GLI E +++E R + +L + A TK +L+
Sbjct: 166 LLE-GKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKG 221
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 58.8 bits (143), Expect = 2e-11
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ---- 55
G G G A+ C+ R + G+IA F W + PR
Sbjct: 139 GPCVGIGLTQALMCDVRFA-AAGAKFAAVFARRGLIAEFGISWIL--------PRLTSWA 189
Query: 56 --TELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
+L L+ G+ F + EA ++GL+ E VT E+ A+ AE + + + K
Sbjct: 190 VALDLLLS-GRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPS---SMAVIK 245
Query: 111 LMLREKTISNLME 123
+ +++E
Sbjct: 246 RQVYGDATRDVVE 258
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 59.2 bits (144), Expect = 3e-11
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR--Q 55
G A G G + A+ C YRI K +GL E +GI+ P PR
Sbjct: 115 GVALGGGLELALGCHYRIAN-AKARVGLPEVTLGIL-PGA---------RGTQLLPRVVG 163
Query: 56 TELAL---TSGKMFTSAEALKVGLIDEEVTSE--EEAITRAETFLAQ 97
+AL TSGK ++ EAL++G++D V S+ EEAI A+ + +
Sbjct: 164 VPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDK 210
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 58.0 bits (141), Expect = 4e-11
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ-TEL 58
G A G + + T + +G + + P + TE+
Sbjct: 130 GPAVGISVTLLGLFDAVYA-SDRATFHTPFSHLGQSPEGCSSYT---FPKIMSPAKATEM 185
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
+ GK T+ EA GL+ EV + T L +A +P A +++K ++R++
Sbjct: 186 LIF-GKKLTAGEACAQGLVT-EVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKRER 243
Query: 119 SNLME 123
L
Sbjct: 244 EKLHA 248
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 58.0 bits (141), Expect = 5e-11
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----WFVDTMVHTLGP-RQTE 57
G A GAG A++ ++R+ P T++G+ + + +G T
Sbjct: 122 GVAAGAGAVLALAADFRVA-DPSTRFAFLFTRVGLSGGDMGAAYL---LPRVVGLGHATR 177
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L + G + EA ++GLI E+T E A A T + A P A TK +L
Sbjct: 178 LLML-GDTVRAPEAERIGLIS-ELTEEGRADEAARTLARRLADGPALAHAQTKALLTA 233
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 57.5 bits (140), Expect = 6e-11
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII----APFWFVDTMVHTLGPRQT-E 57
G A G G A +C+ I +E K+G+I +P+ +V +G R
Sbjct: 108 GAAFGGGAGLAAACDIAIAS-TSARFCFSEVKLGLIPAVISPY-----VVRAIGERAAKM 161
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L ++ ++F + A + L+ ++ + + +Q + A K +K + +
Sbjct: 162 LFMS-AEVFDATRAYSLNLVQ-HCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQY 217
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 57.6 bits (140), Expect = 6e-11
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A GAG A+ + + I TK+G+ A +G +
Sbjct: 116 GPAVGAGLVVALLADISVA-SATAKIIDGHTKLGVAAGDHAAIC---WPLLVGMAKAKYY 171
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
LT + + EA ++GL+ ++E + A A A + TK L
Sbjct: 172 LLT-CETLSGEEAERIGLVS-TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNH 226
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 57.2 bits (139), Expect = 7e-11
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
GH+ G G + ++ + + N K G + LG E+
Sbjct: 99 GHSFGGGLLLGLYADFVVF-SQESVYATNFMKYGFTPVGATSLI---LREKLGSELAQEM 154
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
T G+ + E + G+ V S ++ + A+ + A P + K L
Sbjct: 155 IYT-GENYRGKELAERGIPF-PVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSA 209
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 57.6 bits (140), Expect = 7e-11
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 25/125 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ---- 55
GHA G G A+ + RI+ + + + + G+ W + PR
Sbjct: 107 GHAIGIGMTLALHADIRIL-AEEGRYAIPQVRFGVAPDALAHWTL--------PRLVGTA 157
Query: 56 --TELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
EL LT G F++ A++ GL + + + + A+ A A + LTK
Sbjct: 158 VAAELLLT-GASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPE---SAALTK 213
Query: 111 LMLRE 115
+L +
Sbjct: 214 RLLWD 218
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 57.2 bits (139), Expect = 1e-10
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G A GAG Q AM C+ R++ P +K G+ W + + +G R + L+
Sbjct: 116 GPAIGAGLQLAMQCDLRVV-APDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLS 174
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
+ T+ AL G+ + + + +A A +A+ A + A + K +L +
Sbjct: 175 -AEKLTAEIALHTGMAN-RIGTLADAQAWAAE-IARLAPL---AIQHAKRVLND 222
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 56.8 bits (138), Expect = 1e-10
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A GAG A++C++R++ K + +G++ ++ + +G + EL
Sbjct: 103 GAAAGAGMSLALACDFRLL-SEKASFAPAFIHVGLVPDAGHLYY---LPRLVGRAKALEL 158
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
A+ G+ T+ EA +GL +V + + F + + +P A L K +LRE
Sbjct: 159 AVL-GEKVTAEEAAALGLAT-KVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRE 213
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 56.9 bits (138), Expect = 1e-10
Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G A AG Q +C+ P L + G V + +G R E+ALT
Sbjct: 113 GIATAAGLQLMAACDLAYA-SPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALT 170
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
G + + AL GLI+ + E T A A + L
Sbjct: 171 -GATYDADWALAAGLIN-RILPEAALATHVADLAGALAARNQAPLRRGLETLNR 222
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 57.7 bits (140), Expect = 1e-10
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR--Q 55
G A G G + AM+C RI P +GL E ++G+I P + G PR
Sbjct: 111 GLALGGGLELAMACHARISA-PAAQLGLPELQLGVI-PGF---------GGTQRLPRLVG 159
Query: 56 TELAL---TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA 99
AL + K + E +GLID V E +T A +
Sbjct: 160 LTKALEMILTSKPVKAEEGHSLGLID-AVVPPAELVTTARRWALDIV 205
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 57.2 bits (139), Expect = 2e-10
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A G G + ++ ++R+M IGL E K+GI P + G PR
Sbjct: 112 GIALGGGLEMCLAADFRVMA-DSAKIGLPEVKLGIY-PGF---------GGTVRLPRLIG 160
Query: 57 -ELAL---TSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPG 103
+ A+ SGK + +ALKV +D VT++ A+ + ++
Sbjct: 161 VDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA 214
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 56.0 bits (136), Expect = 3e-10
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
A GAG A++ + ++ G + ++G+ A +G +
Sbjct: 113 KVAVGAGLALALAADIAVV-GKGTRLLDGHLRLGVAAGDHAVLL---WPLLVGMAKAKYH 168
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L + T EA ++GL+ +E+ +A + A P A TK L
Sbjct: 169 LLL-NEPLTGEEAERLGLVA-LAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNH 223
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 56.0 bits (136), Expect = 3e-10
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQT-E 57
GH G +C+ + GP+ + L E ++G+ I+ ++ L R
Sbjct: 117 GHVRAGGFGLVGACDIAVA-GPRSSFALTEARIGVAPAIISLT-----LLPKLSARAAAR 170
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
LT G+ F + A ++GLI E+ + + +K +
Sbjct: 171 YYLT-GEKFDARRAEEIGLITMAA---EDLDAAIDQLVTDVGRGSPQGLAASKALTTA 224
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 55.4 bits (134), Expect = 4e-10
Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 13/151 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G C+ + K + +G+I + G E
Sbjct: 121 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS---LPLKFGTNTTYEC 177
Query: 59 ALTSGKMFTSAEALKVGLI-----DEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML 113
+ K F + G I +E E + + + K +L
Sbjct: 178 LMF-NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLL 236
Query: 114 REKTISNLMENKEKDLKNVVDLITSPQVQKG 144
+ I + ++ + + K
Sbjct: 237 KSNHIDAFNKANSVEVNESLKYWVDGEPLKR 267
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 54.5 bits (132), Expect = 9e-10
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----WFVDTMVHTLGP-RQTE 57
G A G G A++C+ R+ G+ A + + + G R ++
Sbjct: 132 GAAIGGGLCLALACDVRVA-SQDAYFRAAGINNGLTASELGLSYLLPRAI---GTSRASD 187
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
+ LT G+ + EA ++GL+ + E + + A +LTK +
Sbjct: 188 IMLT-GRDVDADEAERIGLVS-RKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGL 245
Query: 118 ISNLME 123
+ +E
Sbjct: 246 DAASLE 251
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 53.7 bits (130), Expect = 2e-09
Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 19/127 (14%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA--------PFWFVDTMVHTLGP- 53
G A G G +F + + +G E MGII +G
Sbjct: 115 GKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLR--------GRVGRN 166
Query: 54 RQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML 113
R E+ LT +F + A G I+ +E + A +P + K L
Sbjct: 167 RALEVVLT-ADLFDAETAASYGWIN-RALPADELDEYVDRVARNIAALPDGVIEAAKRSL 224
Query: 114 REKTISN 120
+
Sbjct: 225 PADDLKE 231
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 53.7 bits (129), Expect = 2e-09
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G A G G + C+ + + +G + + +G E+
Sbjct: 176 GWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFL 235
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
G+ +T+ + ++G ++ E + A A+
Sbjct: 236 -GRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 53.3 bits (129), Expect = 2e-09
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G G C+ K T G ++ G E+
Sbjct: 110 GPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIM---GGASANEM 165
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
L+ G+ T+ EA GL+ +V + + A+ + +K ++R
Sbjct: 166 LLS-GRKLTAQEACGKGLVS-QVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRC 220
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 53.8 bits (129), Expect = 3e-09
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 10/126 (7%)
Query: 3 GHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWF----VDTMVHTLGPRQTE 57
G G G + A++C+ +V ++ L E + + P V R
Sbjct: 138 GACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADI 197
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPGAARKLTKLMLR 114
+ A L+DE V + RA LA + P A+ + +
Sbjct: 198 FCTV-VEGVRGERAKAWRLVDEVVKPNQFDQAIQARALE-LAAQSDRPAHAQGVPLTRIE 255
Query: 115 EKTISN 120
+
Sbjct: 256 RTDRED 261
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 52.9 bits (128), Expect = 3e-09
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G G + + + +G+ +V G + EL
Sbjct: 108 GVAIGIGVTILLQADLVFA-DNTALFQIPFVSLGLSPEGGASQL---LVKQAGYHKAAEL 163
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
T K F + AL+ GL++E V E+A A+ +P A+ K TK +++
Sbjct: 164 LFT-AKKFNAETALQAGLVNEIV---EDAYATAQATAQHLTALPLASLKQTKALMKH 216
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 53.0 bits (128), Expect = 3e-09
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 12/117 (10%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G GC + + + ++G++A + E
Sbjct: 131 GPAVGLGCSLVALSDIVYI-AENAYLADPHVQVGLVAADGGPLT---WPLHISLLLAKEY 186
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
ALT G ++ A+++GL + ++ + A + +P A + TK +L
Sbjct: 187 ALT-GTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELPQQAVESTKRVLNI 239
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 52.5 bits (127), Expect = 5e-09
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G G G + M + T +G+ + + +G L
Sbjct: 108 GLGVGIGATILGYADLAFM-SSTARLKCPFTSLGVAPEAASSYL---LPQLVGRQNAAWL 163
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
++ + + EAL++GL+ + S EE + A A P ++ K + E
Sbjct: 164 LMS-SEWIDAEEALRMGLVW-RICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNR 221
Query: 119 SNLME 123
+ +
Sbjct: 222 AQIAA 226
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 52.3 bits (126), Expect = 5e-09
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G G C+ K T G +G E+
Sbjct: 128 GPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQSPDGCSSIT---FPKMMGKASANEM 183
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
+ G+ T+ EA GL+ +V + + A+ + K ++R
Sbjct: 184 LIA-GRKLTAREACAKGLVS-QVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRC 238
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 52.1 bits (126), Expect = 5e-09
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--WFVDTMVHTLGP-RQTELA 59
G+A G G QFA+ + R+M + E K GI + T G E+
Sbjct: 103 GYAIGMGFQFALMFDQRLM-ASTANFVMPELKHGIGCSVGAAI---LGFTHGFSTMQEII 158
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
+ + + L++ +V + A T A+ P +A TK
Sbjct: 159 YQ-CQSLDAPRCVDYRLVN-QVVESSALLDAAITQAHVMASYPASAFINTK 207
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 51.7 bits (125), Expect = 8e-09
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--WFVDTMVHTLGPRQT-ELA 59
G A G A++C+ +M + +G E K+G +A + V +G + +L
Sbjct: 103 GPAVAGGAGLALACDLVVM-DEEARLGYTEVKIGFVAALVSVIL---VRAVGEKAAKDLL 158
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
LT G++ + EA +GL++ + +A+ A+ + A + +LTK +L
Sbjct: 159 LT-GRLVEAREAKALGLVN-RIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLA 212
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 51.8 bits (125), Expect = 8e-09
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A G G +++ + I +GI + + +G R EL
Sbjct: 109 GVAAGGGLGISLASDMAIC-ADSAKFVCAWHTIGIGNDTATSYS---LARIVGMRRAMEL 164
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
LT + EA GL+ V ++E A + A P + + K
Sbjct: 165 MLT-NRTLYPEEAKDWGLVS-RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHA 219
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 51.8 bits (125), Expect = 1e-08
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 23/119 (19%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A GAG +F ++C+ R +G E +G G R
Sbjct: 112 GRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGA----------GAIQHLTRLLG 161
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
E LT F + A + G ++ + E A+ + P A K
Sbjct: 162 RGRALEAVLT-SSDFDADLAERYGWVN-RAVPDAELDEFVAGIAARMSGFPRDALIAAK 218
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 50.6 bits (121), Expect = 3e-08
Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 27/125 (21%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG------PRQT 56
G A G G Q + + + L K GII G R
Sbjct: 293 GFAIGGGAQLLLVFDRVL-ASSDAYFSLPAAKEGIIP------------GAANLRLGRFA 339
Query: 57 ------ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
++ L G+ + E L+D EV +E E L + A +
Sbjct: 340 GPRVSRQVILE-GRRIWAKEPEARLLVD-EVVEPDELDAAIERSLTRLDGDAVLANRRML 397
Query: 111 LMLRE 115
+ E
Sbjct: 398 NLADE 402
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 49.9 bits (120), Expect = 3e-08
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII--APFWFVDTMVHTLGPRQT-ELA 59
G A AGCQ C+ + ++ +G+ P + +G + E+
Sbjct: 128 GIATAAGCQLVAMCDLAVA-TRDARFAVSGINVGLFCSTPGVAL---SRNVGRKAAFEML 183
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
+T G+ ++ +A +GL++ V + + E +++ P AA + K
Sbjct: 184 VT-GEFVSADDAKGLGLVN-RVVAPKALDDEIEAMVSKIVAKPRAAVAMGK 232
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 49.4 bits (119), Expect = 5e-08
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WFVDTMVHTLGP-R 54
GH G G + A++C+ R M IGL E +G++A + G R
Sbjct: 110 GHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLI-------GYSR 162
Query: 55 QTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
++ +T G+ T EAL++GL+ V + E R + + A A K
Sbjct: 163 ALDMNIT-GETITPQEALEIGLV-NRVFPQAETRERTREYARKLANSATYAVSNIK 216
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 49.1 bits (118), Expect = 6e-08
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT--ELAL 60
G G G +C+ R + E +G+ A + + +G R EL
Sbjct: 116 GGCIGGGVDLISACDIRYC-TQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTF 174
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML---REKT 117
T + + EAL GL+ ++ + A A ++ A + +K+ L R+ +
Sbjct: 175 T-ARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHS 233
Query: 118 IS 119
+
Sbjct: 234 VD 235
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 48.7 bits (117), Expect = 9e-08
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 24/124 (19%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
G A G + A+ C+ I ++G++ + G P++
Sbjct: 101 GAAVTGGLELALYCDILIA-SENAKFADTHARVGLMPTW----------GLSVRLPQKVG 149
Query: 56 ----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
++LT G ++ +AL+ GL+ EV + ++ +T A A A +
Sbjct: 150 VGLARRMSLT-GDYLSAQDALRAGLVT-EVVAHDDLLTAARRVAASIVGNNQKAVRALLD 207
Query: 112 MLRE 115
Sbjct: 208 SYHR 211
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
GHA G + A+ C+ R++ +G+ + G+ + +G + +L LT
Sbjct: 110 GHAVAGGIELALWCDLRVV-EEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILT 168
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
G+ + EAL +GL++ V + +A AET A+ A P + +
Sbjct: 169 -GRPVHANEALDIGLVN-RVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIA 220
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 48.0 bits (115), Expect = 2e-07
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIG-LNETKMGIIAPF---WFVDTMVHTLGP-RQTE 57
G + + + + T GI+ H LG R
Sbjct: 117 GPV-TNAPEIPVMSDIVLA-AESATFQDGPHFPSGIVPGDGAHVV---WPHVLGSNRGRY 171
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
LT G+ + AL G ++ EV SE+E + RA A P AR+ + +L
Sbjct: 172 FLLT-GQELDARTALDYGAVN-EVLSEQELLPRAWELARGIAEKPLLARRYARKVLTR 227
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 47.6 bits (114), Expect = 2e-07
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 24/119 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G+A GAG A++ ++R+ G G E G+I G R
Sbjct: 124 GYALGAGLTLALAADWRVS-GDNVKFGATEILAGLIPGG----------GGMGRLTRVVG 172
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
EL + G+ F + EAL +GLID ++ + ++ A + +Y P A K
Sbjct: 173 SSRAKELVFS-GRFFDAEEALALGLID-DMVAPDDVYDSAVAWARRYLECPPRALAAAK 229
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 47.6 bits (114), Expect = 2e-07
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 24/124 (19%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G AG + ++ + + E GI G PR
Sbjct: 114 GTCWTAGIELMLNADIAV-AARGTRFAHLEVLRGIPPLG----------GSTVRFPRAAG 162
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
LT G F + EAL++ L+ EV E + RA + + A A +
Sbjct: 163 WTDAMRYILT-GDEFDADEALRMRLLT-EVVEPGEELARALEYAERIARAAPLAVRAALQ 220
Query: 112 MLRE 115
+
Sbjct: 221 SAFQ 224
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 47.6 bits (114), Expect = 2e-07
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G G G ++C+ I + T GL+E GI M T+G RQ+ +T
Sbjct: 115 GWCFGGGFSPLVACDLAIC-ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMT 173
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATI 101
GK F +A ++GL++E V + I A L + +
Sbjct: 174 -GKTFGGQKAAEMGLVNESVPLAQLREVTIELARN-LLEKNPV 214
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 47.6 bits (114), Expect = 2e-07
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G+A G GC+ AM C+ I G E K+G++ + +G + +L LT
Sbjct: 124 GYALGGGCELAMMCDVLI-AADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILT 182
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
G+ +AEA + GL+ V ++ +T A + + +A ++ K
Sbjct: 183 -GRTMDAAEAERSGLVS-RVVPADDLLTEARATATTISQMSASAARMAK 229
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 47.1 bits (113), Expect = 3e-07
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G+A G GC+ AM C+ I G E +GI+ + +G + +L LT
Sbjct: 109 GYALGGGCELAMLCDLVI-AADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLT 167
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
G+ T+ EA +VGL+ + + + A + A + A + K
Sbjct: 168 -GRSLTAEEAERVGLVS-RIVPAADLLDEALAVAQRIARMSRPAGRAVK 214
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 47.2 bits (113), Expect = 4e-07
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT--LGPRQT-ELA 59
G G C+ I M I V+ HT LGPR+ E+
Sbjct: 126 GRCISGGLLLCWPCDLIIA-AEDALFSDPVVLMDIGG----VEYHGHTWELGPRKAKEIL 180
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
T G+ T+ E + G+++ V + E A +A+ A + K
Sbjct: 181 FT-GRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGE-IAKMPPF---ALRQAK 229
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 46.7 bits (112), Expect = 4e-07
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G A G G + A+SC+ + G E +G++ + +GP R E T
Sbjct: 104 GLALGGGFELALSCDLIVA-SSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWT 162
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
G ++ EA ++G+++ V S E + + A P A +L K
Sbjct: 163 -GARMSAKEAEQLGIVN-RVVSPELLMEETMRLAGRLAEQPPLALRLIK 209
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 46.8 bits (112), Expect = 4e-07
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
G+A G GC+ AM C+ G K G E +G I + +G E+ LT
Sbjct: 106 GYALGGGCELAMMCDIIY-AGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLT 164
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
G ++ +A + GL+ ++ E + A + A + K
Sbjct: 165 -GDRISAQDAKQAGLVS-KIFPVETLVEEAIQCAEKIANNSKIIVAMAK 211
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 46.7 bits (112), Expect = 4e-07
Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 24/124 (19%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G G + A++ + I T E GI G PR
Sbjct: 111 GKVLTLGIELALAADIVIA-DETATFAQLEVNRGIYPFG----------GATIRFPRTAG 159
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
LT F + EA ++G++ E+ E + A A + T
Sbjct: 160 WGNAMRWMLT-ADTFDAVEAHRIGIVQ-EIVPVGEHVDTAIAIAQTIARQAPLGVQATLR 217
Query: 112 MLRE 115
R
Sbjct: 218 NARL 221
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 46.7 bits (112), Expect = 5e-07
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 24/100 (24%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G G GC+ + R+ T GL E + G++ G RQ
Sbjct: 111 GACLGGGCEMLQQTDIRV-SDEHATFGLPEVQRGLVPGA----------GSMVRLKRQIP 159
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
E+ LT G+ T+ EA GL+ V A+ +A
Sbjct: 160 YTKAMEMILT-GEPLTAFEAYHFGLVG-HVVPAGTALDKA 197
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 46.5 bits (111), Expect = 5e-07
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
G A ++ ++ + + + GI+ LG R
Sbjct: 126 GAALL-HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHIL---WPLALGLYRGRYF 181
Query: 59 ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
T + T+ +A ++ ++ EV + + + RA A P + T++ L +
Sbjct: 182 LFT-QEKLTAQQAYELNVV-HEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQ 236
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 46.4 bits (111), Expect = 6e-07
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 24/119 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
G G G + A + R+ L E GI G PR
Sbjct: 115 GAVIGGGLELACAAHIRV-AEASAYYALPEGSRGIFVGG----------GGSVRLPRLIG 163
Query: 56 ----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
++ LT G+++++AE + G + A +A + A
Sbjct: 164 VARMADMMLT-GRVYSAAEGVVHGFSQ-YLIENGSAYDKALELGNRVAQNAPLTNFAVL 220
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 46.7 bits (111), Expect = 6e-07
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WFVDTMVHTLGPRQ 55
G+A G G + A+SC I +GL E + +
Sbjct: 149 GNALGGGFEAALSCHTII-AEEGVMMGLPEVLFDLFPGMGAYSFMCQRI-------SAHL 200
Query: 56 -TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAAR 106
++ L G ++++ + L +GL+D V + + E + + P A
Sbjct: 201 AQKIMLE-GNLYSAEQLLGMGLVD-RVVPRGQGVAAVEQVIRESKRTPHAWA 250
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 46.3 bits (111), Expect = 7e-07
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A G G +FAMSC R +GL E +G+I F PR
Sbjct: 107 GAALGGGLEFAMSCHMRF-ATESAKLGLPELTLGLIPGF----------AGTQRLPRYVG 155
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
E+ LT T AEALK GL++ V +EE + Q A A +
Sbjct: 156 KAKACEMMLT-STPITGAEALKWGLVN-GVFAEETFLDDTLKVAKQIAGKSPATARAVL 212
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 45.9 bits (110), Expect = 7e-07
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 26/109 (23%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A G G + +++C++RI ++GL ET + II G PR
Sbjct: 111 GIALGGGTELSLACDFRIA-AESASLGLTETTLAIIPGA----------GGTQRLPRLIG 159
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
EL T G+ ++ EA + GL++ V +AI AE +
Sbjct: 160 VGRAKELIYT-GRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 46.0 bits (110), Expect = 9e-07
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A G + + R+ G++E K + G RQ
Sbjct: 124 GPAIAGGTEILQGTDIRVA-AESAKFGISEAKWSLYPMG----------GSAVRLVRQIP 172
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
+L LT G+ T+AEA ++GL+ V + +A+T+A
Sbjct: 173 YTVACDLLLT-GRHITAAEAKEMGLVG-HVVPDGQALTKA 210
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 45.6 bits (109), Expect = 1e-06
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDT--MVHTLGP-RQTELA 59
G G + MS + I T + +G+ V + G EL
Sbjct: 105 GSVWGGAFEMIMSSDLIIA-ASTSTFSMTPVNLGVPYN--LVGIHNLTRDAGFHIVKELI 161
Query: 60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
T T+ AL VG+++ V EE + A + K
Sbjct: 162 FT-ASPITAQRALAVGILN-HVVEVEELEDFTLQMAHHISEKAPLAIAVIK 210
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 45.3 bits (108), Expect = 2e-06
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII--APFWFVDTMV---HTLGPRQT- 56
G A AGCQ SC+ + K + +G+ P V + +
Sbjct: 135 GLATAAGCQLVASCDIAV-ASDKSSFATPGVNVGLFCSTP------GVALARAVPRKVAL 187
Query: 57 ELALTSGKMFTSAEALKVGLIDEEVTSE---EEAITRAET 93
E+ T G+ ++ EAL GL+ + V EE + A
Sbjct: 188 EMLFT-GEPISAQEALLHGLLSKVVPEAELQEETMRIARK 226
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 30/113 (26%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
G A G G + A++C+ R+ +GL ETK+ II G PR
Sbjct: 114 GLALGGGLELALACDIRVA-ASSAKMGLVETKLAIIPGG----------GGTQRLPRAIG 162
Query: 56 ----TELALTSGKMFTSAEALKVGLIDEEVTSEE-------EAITRAETFLAQ 97
EL + ++ EA VGLI + + +A+ A FL Q
Sbjct: 163 MSLAKELIFS-ARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 44.8 bits (107), Expect = 2e-06
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G A G + +SC+ + G G+ E K G++A + + + + + ELALT
Sbjct: 102 GFALAGGTELVLSCDLVV-AGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALT 160
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
G+ FT+ +A K G I+ + + +A+ A A+ A TK ++ E
Sbjct: 161 -GESFTAEDAAKYGFIN-RLVDDGQALDTALELAAKITANGPLAVAATKRIIIE 212
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 44.8 bits (107), Expect = 2e-06
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
G A G G + A++ + + + GL E K G+IA G Q
Sbjct: 110 GTALGGGTELALASDLVVA-DERAQFGLPEVKRGLIAAA----------GGVFRIAEQLP 158
Query: 57 -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
L LT G+ ++A A GLI+ EV + A
Sbjct: 159 RKVAMRLLLT-GEPLSAAAARDWGLIN-EVVEAGSVLDAA 196
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 44.8 bits (107), Expect = 2e-06
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G+A G + A++ + + G+ E K G++A + + + ELALT
Sbjct: 111 GYALAGGTELALATDLIV-AARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALT 169
Query: 62 SGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
G ++ A +G+++ + A+ A
Sbjct: 170 -GDNLSAERAHALGMVN-VLAEPGAALDAA 197
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 43.3 bits (103), Expect = 6e-06
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G+A G G + C+ I G K+G + + +G ++ E+
Sbjct: 116 GYAVGGGNVLNVVCDLTI-AADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 174
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
+ + + EAL +GL++ V E+ E + + +
Sbjct: 175 -CRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 43.4 bits (103), Expect = 7e-06
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G++ G G M C+ I G K+G W M +G ++ E+
Sbjct: 132 GYSIGGGHVLHMMCDLTIA-ADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFL 190
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLA 96
+ + + +AL +GL++ V + E + L
Sbjct: 191 -CRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQ 227
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 43.3 bits (103), Expect = 8e-06
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 27/126 (21%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG------PRQT 56
G GAG + + + I + T +G++A G R
Sbjct: 119 GICCGAGMDWVTTTDIVIA-SEQATFFDPHVSIGLVA------------GRELVRVSRVL 165
Query: 57 ------ELALT-SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLT 109
+AL + ++ A ++GLI E+ + + RA + A + T
Sbjct: 166 PRSIALRMALMGKHERMSAQRAYELGLIS-EIVEHDRLLERAHEIADIVNSNAPLAVRGT 224
Query: 110 KLMLRE 115
+L + +
Sbjct: 225 RLAILK 230
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 41.0 bits (97), Expect = 5e-05
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
G+A G G + C+ I G K+G + + +G ++ E+
Sbjct: 118 GYAIGGGHVLHLVCDLTI-AADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYL 176
Query: 62 SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLA 96
+ +++ EA ++G+++ V + E I A+ L+
Sbjct: 177 -CRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILS 213
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 36.5 bits (84), Expect = 0.001
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 24/157 (15%)
Query: 1 MKGHAPGAGCQFAMSCEYRIM-----------VGPKYTIGLNETKMGIIAPFW--FVDTM 47
A AG A+ M + G I ++ ++ ++
Sbjct: 77 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSL 136
Query: 48 VHTLG--PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAA 105
G E +T T EALK G+I+ E + ++ IP
Sbjct: 137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKSNGMK---TKIPVNG 193
Query: 106 RKLTKLMLREKTISNLMENKEKDLK-NVVDLITSPQV 141
R +T L + L K ++ IT +
Sbjct: 194 RYVT-LNFTNVEVRYL----APSFKDKLISYITDLEH 225
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.006
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 84 EEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLME 123
E++A+ + + L YA +A L I ME
Sbjct: 18 EKQALKKLQASLKLYA--DDSAPAL--------AIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.008
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 43/107 (40%)
Query: 37 IIAPFWFVDTMVHT--LGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF 94
+ +PF H+ L P A L I++++ + +
Sbjct: 423 VASPF-------HSHLLVP---------------ASDL----INKDLVKNNVSFNAKDIQ 456
Query: 95 LAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQV 141
+ Y T G S+L + +VD I V
Sbjct: 457 IPVYDTFDG---------------SDLRVLSGSISERIVDCIIRLPV 488
Score = 33.1 bits (75), Expect = 0.033
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 51/143 (35%)
Query: 15 SCEYRIMVGPKYTIGLNETKMGIIAPFWFV-----DTMVHTLGPRQTELALTSGKMFTSA 69
S E+ ++V P +F+ + L A
Sbjct: 15 SLEHVLLV-P--------------TASFFIASQLQEQFNKILPEPTEGFAA--------- 50
Query: 70 EALKVGLIDEEVTSEEEAITRAETFLAQYA--TIPGAARKLTKLMLR--EKTI------- 118
D+E T+ E + + +++ + G ++ L L E
Sbjct: 51 --------DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 119 ---SNLMENKEKDLKNVVDLITS 138
+ L++ + L +LI +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKN 125
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.5 bits (75), Expect = 0.037
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 67 TSAEALKVGLIDEEVTSEEEAITRAE-TFLA----QYATIPGAARKLTKLMLREKTI 118
+ AL+ G++DE + A+ LA + + L L L+E I
Sbjct: 43 SRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDF---IKILADLDLKEDVI 96
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane,
transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Length = 593
Score = 30.7 bits (69), Expect = 0.21
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
G ++T +A GL+D + ++A+ +A A+ A + L + +M
Sbjct: 484 GHVWTGQDAKANGLVD-SLGDFDDAVAKA----AELAKVKQW--HLEYYVDEPTFFDKVM 536
Query: 123 ENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154
+N ++ ++ + L ++K
Sbjct: 537 DNMSGSVRAMLPDAFQAMLPAPLASVASTVKS 568
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 30.5 bits (69), Expect = 0.23
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 8/139 (5%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI---IAPFWFVDTMVHTLGPRQTE 57
G G G +++ V I + E +G+ + +F++ M +G
Sbjct: 149 GDGIVMGGGLGLMAGASHKV-VTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG---LF 204
Query: 58 LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
L LT +A+A VGL D + +++ + ++ P + M+ E +
Sbjct: 205 LGLT-AYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELS 263
Query: 118 ISNLMENKEKDLKNVVDLI 136
+ + L ++I
Sbjct: 264 NQVDIPKGDSVLAESQEMI 282
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 29.9 bits (68), Expect = 0.30
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLA 96
G+++ +A K+ L+D E+ ++ IT +
Sbjct: 193 GRVYDGRQAKKLNLVD-ELGFYDDTITAMKKDHK 225
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.69
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 79 EEVTSEEEAITR-AETFLAQYATIPGAARKLTKLMLREKTISNL-------MENKEKDLK 130
+ +T E E+I + E + + AA K+ + REK +L E EK+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 131 N 131
N
Sbjct: 137 N 137
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 28.1 bits (62), Expect = 1.5
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 44 VDTMVHTLGPRQTELALTSGKMFTSA 69
+DT +H + P+Q A SG T+
Sbjct: 133 IDTHIHFISPQQIPTAFASG--VTTM 156
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 27.6 bits (61), Expect = 1.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+D VH + P+ A++SG
Sbjct: 404 IDCHVHYICPQLVYEAISSG 423
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 26.6 bits (59), Expect = 3.3
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 69 AEALKVGLIDEEVTSEEEAITRA-----ETFLAQYATIPGAARKLTKLMLREKTISNLME 123
A+ + + DEE+ E E + + + +L +L+ K + L++
Sbjct: 102 AQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQ 161
Query: 124 N 124
Sbjct: 162 E 162
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 26.6 bits (58), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT VH + P Q ++AL +G
Sbjct: 134 IDTHVHFINPDQVDVALANG 153
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 26.6 bits (58), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 43 FVDTMVHTLGPRQTELALTSG 63
+DT +H + P+Q E AL SG
Sbjct: 130 GIDTHIHWICPQQAEEALVSG 150
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 26.0 bits (58), Expect = 5.7
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 44 VDTMVHTLG-PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET-----FLAQ 97
V+ + G ++ L + + + L + EE+ E + T +A
Sbjct: 56 VNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVE-LQDPVTRTQLRAMAA 114
Query: 98 YATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS-PQVQKGLGLYLQSLKK 154
P +L L+ ++ E +++L+ P + ++ L
Sbjct: 115 KTVCPPHKVELEALLEKQA----YKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPS 168
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases,
HSC70, actin) superfamily, acetate kinase, isobutyrate
kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP:
c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Length = 381
Score = 26.0 bits (58), Expect = 6.8
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 72 LKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKN 131
K+ + ++E + + + + L ++ I +L REK +E L +
Sbjct: 14 TKLSIFEDERMVKMQNFSHSPDELGRFQKIL------DQLEFREKIARQFVEETGYSLSS 67
Query: 132 V 132
Sbjct: 68 F 68
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase;
1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1
d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A
2r82_A 2fm4_A
Length = 873
Score = 25.8 bits (57), Expect = 7.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 58 LALTSGKMFTSAEALK--VGLIDEEVTSEEEAITRAE 92
L +GK T+ AL+ L+DE + +EEEA+ R E
Sbjct: 333 LQTRNGKR-TAPAALQIACDLVDEGMITEEEAVVRIE 368
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 25.6 bits (57), Expect = 7.0
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 113 LREKTISNLMENKEKDLKNVVDL---ITSPQVQKGLGLYL------QSLKK 154
+RE ++ L + + NVV L T + + L L Q L
Sbjct: 59 IRE--VAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTT 107
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 25.9 bits (57), Expect = 7.3
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 49 HTLGPRQTELALTSGKMF---------TSAEALK--VGLIDEEVTSEEEAITRAE 92
H + E + G+++ T A++ + +++E + S EEA+ R +
Sbjct: 343 HYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRID 397
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 25.8 bits (57), Expect = 7.4
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 94 FLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS-PQVQKGLGLYLQSL 152
L Y + R+L +L ++ ++ ++DL+ + P Q L L L+ L
Sbjct: 228 ALVDYTSDSAEKRRLQEL-CSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHL 286
Query: 153 KK 154
K
Sbjct: 287 PK 288
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 25.5 bits (56), Expect = 7.4
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 112 MLREKTISNLMENKEKDLKNVVDLITSPQ----VQKGLGLYLQSLKKK 155
ML+ L++N ++ KN+ +LIT + + L + +++K
Sbjct: 242 MLQTVGNGYLLKNATQEAKNLHNLITDSEYSKGITNTLKKLIGFMRRK 289
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 25.2 bits (56), Expect = 9.0
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 67 TSAEALKVGLIDEEVTSEEEAITRAE-TFLAQY-ATIPGAARKLTKLMLREKTI 118
T +A++ L+D E + + A+ FL I KL L I
Sbjct: 35 TCEKAVERQLVD-EAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH-LSPTAI 86
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken
structural genomics/proteomics INI RSGI, structural
genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1
d.142.1.5 PDB: 1vbh_A*
Length = 876
Score = 25.5 bits (56), Expect = 9.2
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 49 HTLGPRQTELALTSGKMF---------TSAEALK--VGLIDEEVTSEEEAITRAE 92
H + E + +++ T A+K V +++E + AI E
Sbjct: 318 HYKEMQDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVE 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,240,298
Number of extensions: 126916
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 116
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)