RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15240
(155 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 61.3 bits (148), Expect = 1e-12
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 2/145 (1%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G+A G GC+ AM C+ G K G E +G I + +G +
Sbjct: 104 VNGYALGGGCELAMMCDIIYA-GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMV 162
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
+G ++ +A + G + ++ E + A + A + K +
Sbjct: 163 LTGDRISAQDAKQAG-LVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMT 221
Query: 121 LMENKEKDLKNVVDLITSPQVQKGL 145
L E + + K + ++G+
Sbjct: 222 LTEGNKLEKKLFYSTFATDDRREGM 246
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 43.9 bits (102), Expect = 2e-06
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 5/148 (3%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G A G C+ + K + +G+I ++ G T L
Sbjct: 115 LNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL 174
Query: 61 TSGKMFTSAEALKVGLIDE-----EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
K F + G I + +E E + + + K +L+
Sbjct: 175 MFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKS 234
Query: 116 KTISNLMENKEKDLKNVVDLITSPQVQK 143
I + ++ + + K
Sbjct: 235 NHIDAFNKANSVEVNESLKYWVDGEPLK 262
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 41.7 bits (96), Expect = 9e-06
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 84 EEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQK 143
EE+ + A + +AQ+ IP AR+LTK M+R+ T S L+ ++ D++N V I+ +QK
Sbjct: 186 EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQK 245
Query: 144 GL 145
L
Sbjct: 246 SL 247
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 35.5 bits (80), Expect = 0.002
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 2/146 (1%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G G G +C+ R + E +G+ A + + +G R L
Sbjct: 114 IHGGCIGGGVDLISACDIRYCT-QDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNEL 172
Query: 61 TSGKMFTSAE-ALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
T A+ AL GL+ ++ + A A ++ A + +K+ L
Sbjct: 173 TFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDH 232
Query: 120 NLMENKEKDLKNVVDLITSPQVQKGL 145
++ E+ + + ++ + + K +
Sbjct: 233 SVDESLDYMATWNMSMLQTQDIIKSV 258
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 32.7 bits (73), Expect = 0.013
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 3/145 (2%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G A G A++C+ ++V + +V +G + + L
Sbjct: 101 VNGPAVAGGAGLALACD--LVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLL 158
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
+G++ + EA +GL++ + + A + +LTK +L
Sbjct: 159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKA-LAEEVAKNAPTSLRLTKELLLALPGMG 217
Query: 121 LMENKEKDLKNVVDLITSPQVQKGL 145
L + + + + +G+
Sbjct: 218 LEDGFRLAALANAWVRETGDLAEGI 242
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 29.4 bits (65), Expect = 0.15
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 15/96 (15%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G A G ++ IMV + + + I + + LG T +A
Sbjct: 168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDV--IKTVTGEEVTMEELGGAHTHMA- 224
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLA 96
K G + E++A L+
Sbjct: 225 ------------KSGTAHYAASGEQDAFDYVRELLS 248
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 28.9 bits (64), Expect = 0.19
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 15/96 (15%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
+ G G ++ +MV + + + + G ++ L
Sbjct: 165 IAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNV-----------IKAVTGEEISQEDL 213
Query: 61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLA 96
+ K G ++E+A++ T L+
Sbjct: 214 GGAMVHNQ----KSGNAHFLADNDEKAMSLVRTLLS 245
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 27.9 bits (60), Expect = 0.50
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 54 RQTELALTSGKMFTSAEALKVGL-IDEEVTSEEEAITRAETFLAQYA 99
+ + + G +F + ++ EV EA+ R + F ++A
Sbjct: 367 EEENVQVLPGTIFHAPGFTRLTTTRPVEVY--REAVERIKAFCQRHA 411
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 27.8 bits (62), Expect = 0.59
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT VH + P Q ++AL +G
Sbjct: 3 IDTHVHFINPDQVDVALANG 22
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of
urease, catalytic domain {Klebsiella aerogenes [TaxId:
28451]}
Length = 385
Score = 27.7 bits (62), Expect = 0.61
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT +H + P+Q E AL SG
Sbjct: 2 IDTHIHWICPQQAEEALVSG 21
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 27.3 bits (60), Expect = 0.62
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFW-----FVDTMVHTLG--- 52
+ GA + M M+ T+ +A +T+ L
Sbjct: 98 TVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 157
Query: 53 ---PRQTELALTSGKMFTSAEALKVGLIDEEVTS 83
+ ++ E L+ G IDE + +
Sbjct: 158 GQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 191
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 27.7 bits (62), Expect = 0.63
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 44 VDTMVHTLGPRQTELALTSG 63
+DT +H + P+Q A SG
Sbjct: 2 IDTHIHFISPQQIPTAFASG 21
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 26.8 bits (58), Expect = 1.00
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 15/93 (16%)
Query: 4 HAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSG 63
G ++ + I++ K + + ++ + G T L
Sbjct: 170 GPCAGGASYSPALTDFIIMTKKAHMFITGPQV-----------IKSVTGEDVTADELGGA 218
Query: 64 KMFTSAEALKVGLIDEEVTSEEEAITRAETFLA 96
+ + G I ++ A A+ L+
Sbjct: 219 EAHMA----ISGNIHFVAEDDDAAELIAKKLLS 247
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 26.5 bits (57), Expect = 1.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 53 PRQTELALTSGKMF---------TSAEALK--VGLIDEEVTSEEEAITRAE 92
+ E + GK++ T+ AL+ L+DE + +EEEA+ R E
Sbjct: 318 MQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIE 368
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 26.4 bits (58), Expect = 1.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 66 FTSAEALKVGLIDEEVTS 83
++ EA++ GL+D +T
Sbjct: 164 LSAPEAVEYGLVDSILTH 181
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 25.7 bits (56), Expect = 2.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 66 FTSAEALKVGLIDEEVT 82
FT+AEAL+ G +D +T
Sbjct: 161 FTAAEALEYGFVDHIIT 177
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 405
Score = 26.1 bits (56), Expect = 2.1
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 53 PRQTELALTSGKMF---------TSAEALK--VGLIDEEVTSEEEAITRAE 92
+ E + G+++ T A++ + +++E + S EEA+ R +
Sbjct: 346 MQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRID 396
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 25.1 bits (54), Expect = 3.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 66 FTSAEALKVGLIDEEVTS 83
+ EA + G+IDE + +
Sbjct: 165 MNALEAKQYGIIDEVIET 182
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 25.3 bits (55), Expect = 3.5
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 66 FTSAEALKVGLIDEEVTS 83
+ EA + G++D+ +
Sbjct: 174 MSPMEAQEFGILDKVLVH 191
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 24.9 bits (54), Expect = 3.7
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 61 TSGKMFTSAEALKVGLIDEE---VTSEEEAIT 89
+ + + E ++ G++D E +A T
Sbjct: 11 ENLEKISITEGIERGIVDSITGQRLLEAQACT 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,463
Number of extensions: 21586
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 24
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)