BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15241
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 78.6 bits (192), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
+N + LR Q ++AE+R+AK +I + + F+ SW+PYAVVAL FG +TP
Sbjct: 241 LNAKELRKAQ--AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQ 298
Query: 61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIP 93
+P KA A +P +Y++SHP++R +S+ P
Sbjct: 299 LPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
+N + LR Q ++AE+R+AK +I + + F+ SW+PYAVVAL FG +TP
Sbjct: 240 LNAKELRKAQ--AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQ 297
Query: 61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIP 93
+P KA A +P +Y++SHP++R +S+ P
Sbjct: 298 LPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 330
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 10 QKEGQSS--AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCK 67
Q+E ++ AE + + I + F+ W PYA VA S P IPA K
Sbjct: 238 QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAK 297
Query: 68 AVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
A +P +Y + + ++R + + C + E T ++TE +
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETS 344
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 10 QKEGQSS--AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCK 67
Q+E ++ AE + + I + F+ W PYA VA S P IPA K
Sbjct: 237 QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAK 296
Query: 68 AVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
A +P +Y + + ++R + + C + E T ++TE +
Sbjct: 297 TSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETS 343
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 10 QKEGQSS--AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCK 67
Q+E ++ AE + + I + F+ W PYA VA S P IPA K
Sbjct: 238 QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAK 297
Query: 68 AVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
A +P +Y + + ++R + + C + E T ++TE +
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETS 344
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 10 QKEGQSS--AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCK 67
Q+E ++ AE + + I F+ W PYA VA S P IPA K
Sbjct: 238 QQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAK 297
Query: 68 AVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
A +P +Y + + ++R + + C + E T ++TE +
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETS 344
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 3 VESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIP 62
+ + R+G + E + A+T + F+ +WTPY ++ L F D S + +
Sbjct: 354 ITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCD-SCIPKTYWNLG 412
Query: 63 ACTCKAVACLDPYVYAISHPRYRLELSKRIPC 94
C + ++P YA+ + +R + C
Sbjct: 413 YWLCYINSTVNPVCYALCNKTFRTTFKTLLLC 444
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPY 75
S E ++ +T + + F+ +W PY V+ L F + T I C + ++P
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWT-IGYWLCYINSTINPA 439
Query: 76 VYAISHPRYRLELSKRIPC 94
YA+ + ++ + C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 3 VESLRSGQKEGQSSA---EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLT 59
+ + R+G + S EV AK+ + LF W P ++ F P
Sbjct: 372 ITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL 431
Query: 60 MIPACTCKAV-ACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEK 104
M A + ++P++YA +R K I ++++EP K
Sbjct: 432 MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 477
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 18 EVRIAKTAITLCALFVASWTPYAVVALTGAF----GDQSLLTPGLTMIPACTCKAVACLD 73
EV AK+A + LF W P ++ F L L ++ A T V +
Sbjct: 228 EVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVV---N 284
Query: 74 PYVYAISHPRYRLELSKRIPCLGIKEKEPEK 104
P++YA +R K I ++++EP K
Sbjct: 285 PFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 315
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 18 EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAV-ACLDPYV 76
EV AK+ + LF W P ++ F P M A + ++P++
Sbjct: 228 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFI 287
Query: 77 YAISHPRYRLELSKRIPCLGIKEKEPEKETAS 108
YA +R K I ++++EP K A+
Sbjct: 288 YAYRIREFRQTFRKIIRSHVLRQQEPFKAAAA 319
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 6 LRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACT 65
L SG +E + RI + + + A+FV WTP V L G Q + ++ CT
Sbjct: 321 LLSGSREKDRNLR-RITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCT 379
Query: 66 CKAV--ACLDPYVYA 78
+CL+P +YA
Sbjct: 380 ALGYVNSCLNPILYA 394
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 18 EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAV-ACLDPYV 76
EV AK+ + LF W P ++ F P M A + ++P++
Sbjct: 349 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFI 408
Query: 77 YAISHPRYRLELSKRIPCLGIKEKEPEK 104
YA +R K I ++++EP K
Sbjct: 409 YAYRIREFRQTFRKIIRSHVLRQQEPFK 436
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 3 VESLRSGQKEG---QSSAEVRIAKTAITLCALFVASWTPYAVVAL 44
+ + R+G + +SS V + KT I + ++F+A W P ++ L
Sbjct: 398 ITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLL 442
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 18 EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAV-ACLDPYV 76
EV AK+ + LF W P ++ F P M A + ++P++
Sbjct: 228 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFI 287
Query: 77 YAISHPRYRLELSKRIPCLGIKEKEPEK 104
YA +R K I ++++EP K
Sbjct: 288 YAYRIREFRQTFRKIIRSHVLRQQEPFK 315
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 38 PYAVVALTGAFGDQSLLTPGLTMIPACTCKA 68
PY + + G + T L+ IP C CKA
Sbjct: 19 PYKHIKVNRPIGRVQIFTADLSEIPRCNCKA 49
>pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
Faecalis And S. Pyogenes
Length = 188
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 85 RLELSKRIPCLGIKEKEPEKETASAQTEATTP 116
+L++SKRI + + +PE ET S T P
Sbjct: 65 QLDISKRIIAVHVPSNDPENETPSLSTVMYNP 96
>pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
Faecalis And S. Pyogenes
Length = 188
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 85 RLELSKRIPCLGIKEKEPEKETASAQTEATTP 116
+L++SKRI + + +PE ET S T P
Sbjct: 65 QLDISKRIIAVHVPSNDPENETPSLSTVMYNP 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,060,489
Number of Sequences: 62578
Number of extensions: 101201
Number of successful extensions: 232
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 22
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)