RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15241
         (117 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 14  QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL--LTPGLTMIPACTCKAVAC 71
            SS E + AK  + +  +FV  W PY +V L  +    S+  L P   +I        +C
Sbjct: 186 SSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSC 245

Query: 72  LDPYVY 77
           L+P +Y
Sbjct: 246 LNPIIY 251


>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
          Length = 488

 Score = 27.0 bits (61), Expect = 2.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 49  GDQSLLTPGLTMI 61
           GD SLL PGL  +
Sbjct: 200 GDISLLEPGLDWL 212


>gnl|CDD|236311 PRK08609, PRK08609, hypothetical protein; Provisional.
          Length = 570

 Score = 26.5 bits (59), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 70  ACLDPYVYAISHPRYRL 86
           AC +PYV  I+HP  RL
Sbjct: 454 ACRNPYVRLIAHPTGRL 470


>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
           subunit.  This family of thioredoxin reductase homologs
           is found adjacent to alkylhydroperoxide reductase C
           subunit predominantly in cases where there is only one C
           subunit in the genome and that genome is lacking the F
           subunit partner (also a thioredcxin reductase homolog)
           that is usually found (TIGR03140).
          Length = 555

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 68  AVACLDPYVYAISHPRYRLELSKRIPCLGIKE---KEPEKETASAQTEATTP 116
           AVA  D  + A S  RY  EL ++   LGI E   +E  KE + A    TTP
Sbjct: 293 AVA--DGAIAATSAERYVKELKEK---LGIAEEYEEEEAKEASEASAAETTP 339


>gnl|CDD|201566 pfam01036, Bac_rhodopsin, Bacteriorhodopsin-like protein.  The
           bacterial opsins are retinal-binding proteins that
           provide light- dependent ion transport and sensory
           functions to a family of halophilic bacteria. They are
           integral membrane proteins believed to contain seven
           transmembrane (TM) domains, the last of which contains
           the attachment point for retinal (a conserved lysine).
           This family also includes distantly related proteins
           that do not contain the retinal binding lysine and so
           cannot function as opsins.
          Length = 208

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 11/34 (32%), Positives = 11/34 (32%)

Query: 16  SAEVRIAKTAITLCALFVASWTPYAVVALTGAFG 49
           S          TL  L V  W  Y V  L G  G
Sbjct: 152 SLPSERRSLFNTLRNLVVVLWILYPVAWLLGEGG 185


>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional.
          Length = 443

 Score = 26.1 bits (57), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 24  TAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLT 59
           TAI L A+F  +  P +   L G    Q+L+   LT
Sbjct: 341 TAIQLLAIFSQADKPVSEFKLQGELMQQTLINVPLT 376


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0819    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,499,428
Number of extensions: 449320
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 12
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)