RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15241
         (117 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 65.8 bits (159), Expect = 1e-14
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 16  SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPY 75
            AE  + +  I +   F+  W PYA VA        S   P    IPA   K  A  +P 
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 76  VYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           +Y + + ++R  +   + C      + E  T  ++TE + 
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQ 344


>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex
          {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 30

 Score = 21.6 bits (46), Expect = 8.8
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 26 ITLCALFVASWTPY 39
          +T+  LFV ++  Y
Sbjct: 16 VTIAGLFVTAYLQY 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,479
Number of extensions: 14870
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)