BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15243
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
+MS+ +A +++I ++ + + WA+ P W + EG L +C+FDY++ + R +L M
Sbjct: 146 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 204
Query: 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
FI+ + P+ +I Y IV V +HEK + AK++N + LR Q ++AE+R+AK
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQ--AGANAEMRLAKI 262
Query: 124 AITLCALFVASWTPYAVVALTGAFG 148
+I + + F+ SW+PYAVVAL FG
Sbjct: 263 SIVIVSQFLLSWSPYAVVALLAQFG 287
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
+MS+ +A +++I ++ + + WA+ P W + EG L +C+FDY++ + R +L M
Sbjct: 145 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 203
Query: 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
FI+ + P+ +I Y IV V +HEK + AK++N + LR Q ++AE+R+AK
Sbjct: 204 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQ--AGANAEMRLAKI 261
Query: 124 AITLCALFVASWTPYAVVALTGAFG 148
+I + + F+ SW+PYAVVAL FG
Sbjct: 262 SIVIVSQFLLSWSPYAVVALLAQFG 286
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I + F+ W PYA VA
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 170 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 226
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I + F+ W PYA VA
Sbjct: 227 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 273
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I + F+ W PYA VA
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I + F+ W PYA VA
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 170 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 226
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I + F+ W PYA VA
Sbjct: 227 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 273
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 28 PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
P L WSR++PEG SC DY TP E +V++MF++ + IP+ +I Y Q+
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
VF+ ++A +Q + + AE + + I F+ W PYA VA
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIYVIAFLICWLPYAGVAF 274
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 43 TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+C F+ + P + + V F F C +P+ +++ Y +I A R Q K+M
Sbjct: 164 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIFA-------AARRQLKQMES 213
Query: 103 ESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV 141
+ L + EV AK+A + LF W P ++
Sbjct: 214 QPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHII 252
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 43 TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+C F+ + P + + V F F C +P+ +++ Y +I A R Q K+M
Sbjct: 164 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIF-------LAARRQLKQMES 213
Query: 103 ESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV 141
+ L + EV AK+ + LF W P ++
Sbjct: 214 QPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHII 252
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 43 TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+C F+ + P + + V F F C +P+ +++ Y +I A R Q K+M
Sbjct: 164 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIF-------LAARRQLKQMES 213
Query: 103 ESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV 141
+ L + EV AK+ + LF W P ++
Sbjct: 214 QPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHII 252
>pdb|1EDV|A Chain A, Solution Structure Of 2nd Intradiskal Loop Of Bovine
Rhodopsin (Residues 172-205)
Length = 34
Score = 35.0 bits (79), Expect = 0.016, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 33 WSRFVPEGYLTSCTFDYLTPTE 54
WSR++PEG SC DY TP E
Sbjct: 4 WSRYIPEGMQCSCGIDYYTPHE 25
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 95 EQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD 149
+AK++ + + R+G + E + A+T + F+ +WTPY ++ L F D
Sbjct: 348 NRAKRV-ITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCD 401
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 95 EQAKKMNVESLRSGQKEG--QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147
+AK++ + + R+G + S E ++ +T + + F+ +W PY V+ L F
Sbjct: 360 NRAKRV-ITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTF 413
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/161 (15%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTPTESIRFYV 60
++ +KA +I+++++ + P W R + Y D+ T + Y
Sbjct: 145 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTN----QAYA 200
Query: 61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
+ I+ + +P+ +++ YS++ + + + + +V++L +++G++ +R
Sbjct: 201 IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRR 260
Query: 121 A-----------KTAITLCALFVASWTPYAVVALTGAFGDQ 150
+ KT + F W P+ +V + D
Sbjct: 261 SSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN 301
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/161 (15%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTPTESIRFYV 60
++ +KA +I+++++ + P W R + Y D+ T Y
Sbjct: 122 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQA----YA 177
Query: 61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
+ I+ + +P+ +++ YS++ + + + + +V++L +++G++ +R
Sbjct: 178 IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRR 237
Query: 121 A-----------KTAITLCALFVASWTPYAVVALTGAFGDQ 150
+ KT + F W P+ +V + D
Sbjct: 238 SSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN 278
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/161 (15%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTPTESIRFYV 60
++ +KA +I+++++ + P W R + Y D+ T + Y
Sbjct: 294 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN----QAYA 349
Query: 61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
+ I+ + +P+ +++ YS++ + + + + +V++L +++G++ +R
Sbjct: 350 IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRR 409
Query: 121 A-----------KTAITLCALFVASWTPYAVVALTGAFGDQ 150
+ KT + F W P+ +V + D
Sbjct: 410 SSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN 450
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/161 (15%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTPTESIRFYV 60
++ +KA +I+++++ + P W R + Y D+ T + Y
Sbjct: 146 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN----QAYA 201
Query: 61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
+ I+ + +P+ +++ YS++ + + + + +V++L +++G++ +R
Sbjct: 202 IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRR 261
Query: 121 A-----------KTAITLCALFVASWTPYAVVALTGAFGDQ 150
+ KT + F W P+ +V + D
Sbjct: 262 SSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN 302
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 95 EQAKKMNVESLRSGQKEG---QSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
+AK++ + + R+G + +SS V + KT I + ++F+A W P ++ L
Sbjct: 392 NRAKRV-ITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLL 442
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,144,784
Number of Sequences: 62578
Number of extensions: 145992
Number of successful extensions: 374
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 25
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)