Query psy15243
Match_columns 150
No_of_seqs 132 out of 1066
Neff 10.3
Searched_HMMs 46136
Date Sat Aug 17 00:57:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 2E-20 4.3E-25 134.3 8.5 136 1-148 141-287 (423)
2 KOG4220|consensus 99.7 1.4E-17 3.1E-22 120.1 9.5 87 2-93 139-227 (503)
3 PHA03234 DNA packaging protein 99.7 3.6E-17 7.8E-22 118.9 11.5 113 9-146 146-261 (338)
4 PHA03235 DNA packaging protein 99.7 3.3E-17 7.1E-22 121.7 11.5 119 5-147 143-269 (409)
5 PF00001 7tm_1: 7 transmembran 99.7 4.3E-17 9.2E-22 112.9 11.1 133 5-149 96-229 (257)
6 PHA02834 chemokine receptor-li 99.7 3E-17 6.5E-22 118.8 8.1 118 5-147 136-254 (323)
7 PHA02638 CC chemokine receptor 99.7 8.1E-16 1.7E-20 114.7 11.5 119 5-147 207-338 (417)
8 PHA03087 G protein-coupled che 99.6 1.5E-14 3.3E-19 105.1 12.8 118 5-146 150-268 (335)
9 KOG2087|consensus 98.8 3E-09 6.4E-14 76.5 3.3 120 4-148 142-261 (363)
10 PF05296 TAS2R: Mammalian tast 98.4 1.7E-05 3.6E-10 57.3 13.8 73 59-140 180-252 (303)
11 PF10324 7TM_GPCR_Srw: Serpent 97.8 0.0005 1.1E-08 49.8 10.6 127 6-147 120-267 (318)
12 PF10323 7TM_GPCR_Srv: Serpent 97.7 0.00049 1.1E-08 49.3 9.7 115 5-138 115-229 (283)
13 PF03402 V1R: Vomeronasal orga 97.5 0.00044 9.5E-09 48.9 6.4 126 7-144 92-223 (265)
14 PF05462 Dicty_CAR: Slime mold 97.4 0.011 2.4E-07 42.8 12.2 26 124-149 204-229 (303)
15 PF10328 7TM_GPCR_Srx: Serpent 97.2 0.012 2.7E-07 41.8 11.1 124 5-142 106-230 (274)
16 PF02101 Ocular_alb: Ocular al 96.6 0.029 6.2E-07 41.6 8.6 24 120-143 242-265 (405)
17 PF10320 7TM_GPCR_Srsx: Serpen 95.4 0.23 4.9E-06 35.1 8.7 79 41-144 131-209 (257)
18 PF10322 7TM_GPCR_Sru: Serpent 95.1 0.28 6.1E-06 35.7 8.6 56 66-132 202-257 (307)
19 PF10327 7TM_GPCR_Sri: Serpent 95.1 0.3 6.6E-06 35.4 8.8 70 62-147 196-265 (303)
20 PF11710 Git3: G protein-coupl 93.4 0.76 1.6E-05 31.3 7.4 51 36-91 149-199 (201)
21 PF01534 Frizzled: Frizzled/Sm 91.5 4.4 9.6E-05 29.9 10.6 41 8-50 134-174 (328)
22 PF10321 7TM_GPCR_Srt: Serpent 91.4 2.2 4.9E-05 31.2 8.1 70 59-143 195-264 (313)
23 PF00002 7tm_2: 7 transmembran 89.0 0.12 2.6E-06 35.9 0.0 20 119-138 195-214 (242)
24 PF02076 STE3: Pheromone A rec 88.9 7 0.00015 28.2 12.7 21 124-144 200-220 (283)
25 KOG4193|consensus 88.7 2.4 5.1E-05 34.0 6.8 61 15-86 432-492 (610)
26 PF11970 Git3_C: G protein-cou 87.9 1.4 3.1E-05 25.1 3.9 29 115-143 5-34 (76)
27 PF04789 DUF621: Protein of un 87.1 9.3 0.0002 27.6 10.7 104 7-133 131-241 (305)
28 KOG2575|consensus 82.4 2 4.4E-05 32.5 3.5 25 117-141 254-278 (510)
29 PF02118 Srg: Srg family chemo 82.0 15 0.00033 25.8 10.7 50 66-135 175-224 (275)
30 PF10317 7TM_GPCR_Srd: Serpent 80.1 19 0.00042 25.9 12.5 34 114-147 219-252 (292)
31 PF10292 7TM_GPCR_Srab: Serpen 71.2 38 0.00083 24.8 12.2 30 114-143 225-254 (324)
32 COG1862 YajC Preprotein transl 68.3 13 0.00027 22.4 3.7 31 68-98 12-42 (97)
33 PF15086 UPF0542: Uncharacteri 68.1 19 0.00042 20.2 5.8 32 61-92 22-54 (74)
34 PF09889 DUF2116: Uncharacteri 54.2 21 0.00045 19.3 2.7 19 117-135 35-53 (59)
35 PF13853 7tm_4: Olfactory rece 53.8 0.22 4.9E-06 32.0 -6.0 32 58-89 56-87 (144)
36 PF10326 7TM_GPCR_Str: Serpent 53.3 13 0.00028 26.9 2.4 65 64-144 201-266 (307)
37 KOG1380|consensus 52.7 7.5 0.00016 28.8 1.1 23 11-34 219-241 (409)
38 COG1007 NuoN NADH:ubiquinone o 52.1 1.2E+02 0.0025 24.0 7.5 26 66-91 404-429 (475)
39 PRK06531 yajC preprotein trans 51.9 25 0.00055 21.7 3.1 24 70-93 7-30 (113)
40 PF03155 Alg6_Alg8: ALG6, ALG8 51.0 27 0.00058 27.3 3.8 27 115-141 218-244 (469)
41 PF05478 Prominin: Prominin; 49.6 1.6E+02 0.0034 24.9 8.2 31 118-148 457-487 (806)
42 TIGR00739 yajC preprotein tran 49.1 38 0.00082 19.6 3.5 28 70-97 7-35 (84)
43 PF06814 Lung_7-TM_R: Lung sev 47.3 1.1E+02 0.0023 22.2 6.6 25 66-90 188-213 (295)
44 PF05241 EBP: Emopamil binding 45.9 48 0.001 22.5 4.1 32 58-89 160-191 (194)
45 COG3924 Predicted membrane pro 45.2 38 0.00082 19.1 2.8 23 64-87 47-69 (80)
46 PRK05886 yajC preprotein trans 45.1 64 0.0014 19.8 4.1 25 69-93 7-32 (109)
47 KOG4564|consensus 44.8 20 0.00043 28.0 2.3 51 69-135 317-367 (473)
48 PF02699 YajC: Preprotein tran 44.2 31 0.00067 19.9 2.6 20 73-92 10-29 (82)
49 PF04505 Dispanin: Interferon- 44.2 62 0.0013 18.6 5.1 28 59-87 21-48 (82)
50 PF10318 7TM_GPCR_Srh: Serpent 39.8 1.4E+02 0.003 21.4 9.9 34 113-146 224-258 (302)
51 PF04238 DUF420: Protein of un 39.5 66 0.0014 20.5 3.7 27 115-141 32-58 (133)
52 COG4068 Uncharacterized protei 38.3 63 0.0014 17.4 2.9 21 115-135 37-57 (64)
53 PRK05585 yajC preprotein trans 38.0 90 0.002 19.0 4.0 22 75-96 28-49 (106)
54 PF14494 DUF4436: Domain of un 35.9 89 0.0019 22.4 4.3 18 13-30 200-217 (256)
55 TIGR02736 cbb3_Q_epsi cytochro 33.7 80 0.0017 16.8 2.9 24 68-91 5-28 (56)
56 PF11298 DUF3099: Protein of u 31.8 72 0.0016 18.0 2.7 26 113-138 13-38 (73)
57 PF06170 DUF983: Protein of un 31.5 99 0.0021 18.0 3.3 35 40-74 9-44 (86)
58 PHA01815 hypothetical protein 31.2 79 0.0017 16.0 3.7 20 63-82 10-29 (55)
59 PRK13743 conjugal transfer pro 29.4 54 0.0012 20.8 2.1 34 44-78 64-97 (141)
60 PRK04989 psbM photosystem II r 29.0 76 0.0017 15.1 2.7 22 61-82 8-29 (35)
61 PF07779 Cas1_AcylT: 10 TM Acy 28.9 2.3E+02 0.005 22.5 5.8 17 118-134 76-92 (488)
62 PF12609 DUF3774: Wound-induce 28.0 5.3 0.00012 22.9 -2.3 9 129-137 71-79 (79)
63 PF06796 NapE: Periplasmic nit 27.9 1.1E+02 0.0023 16.4 2.9 14 111-124 11-24 (56)
64 PF06161 DUF975: Protein of un 27.4 2.2E+02 0.0047 19.8 8.3 26 64-89 151-176 (243)
65 PF05510 Sarcoglycan_2: Sarcog 25.6 2E+02 0.0042 22.1 4.8 24 64-87 285-308 (386)
66 TIGR03038 PS_II_psbM photosyst 24.7 92 0.002 14.6 2.8 22 61-82 8-29 (33)
67 PF10445 DUF2456: Protein of u 23.3 1.5E+02 0.0033 17.7 3.1 23 117-139 26-48 (94)
68 KOG4686|consensus 23.1 3.4E+02 0.0073 20.5 7.6 24 119-142 264-287 (459)
69 PF03219 TLC: TLC ATP/ADP tran 22.6 3.5E+02 0.0075 21.5 5.8 18 117-134 278-295 (491)
70 CHL00080 psbM photosystem II p 22.5 1.1E+02 0.0023 14.5 2.6 22 61-82 8-29 (34)
71 PF06072 Herpes_US9: Alphaherp 21.9 1.5E+02 0.0033 16.0 3.5 23 115-137 26-49 (60)
72 PF12166 DUF3595: Protein of u 20.9 1.3E+02 0.0028 23.1 3.2 29 119-147 63-91 (422)
73 PF10601 zf-LITAF-like: LITAF- 20.9 1.6E+02 0.0034 16.3 2.8 9 132-140 43-51 (73)
74 PF15102 TMEM154: TMEM154 prot 20.6 12 0.00026 24.2 -1.9 17 66-82 59-75 (146)
75 KOG4016|consensus 20.6 3.1E+02 0.0067 19.2 6.1 36 12-48 27-62 (233)
76 PF10319 7TM_GPCR_Srj: Serpent 20.0 3.8E+02 0.0082 19.9 8.5 11 115-125 239-249 (310)
No 1
>KOG4219|consensus
Probab=99.83 E-value=2e-20 Score=134.33 Aligned_cols=136 Identities=19% Similarity=0.268 Sum_probs=101.7
Q ss_pred CCCcccchhhhhhhHHHHHHHHHhhhhhccccccceeecC----CcceEEEeecCC--C-cch----hhhHHHHHHHHHH
Q psy15243 1 MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTP--T-ESI----RFYVLFMFIICYC 69 (150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~----~~~~C~~~~~~~--~-~~~----~~y~~~~~~~~~~ 69 (150)
+++|.+++.+++.++++|++|++++.|.++. .+..+... ....|...|++. + ... +.|.....++.++
T Consensus 141 l~~r~s~r~sk~iIllIW~lA~l~a~P~~l~-s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYf 219 (423)
T KOG4219|consen 141 LQPRPSRRSSKIIILLIWALALLLALPQLLY-SSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYF 219 (423)
T ss_pred cccCCCCcceeehhHHHHHHHHHHhccceee-eeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHH
Confidence 3567899999999999999999999998774 32222111 134687777654 2 111 2377777789999
Q ss_pred HhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243 70 IPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG 148 (150)
Q Consensus 70 ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~ 148 (150)
+|++++..+|..|.+.+|..+....++ .++..+.++++|+.||+.+||+.|.+||+||++..++....
T Consensus 220 lPliVl~~~Yt~iav~LW~~~~~gd~~-----------d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~ 287 (423)
T KOG4219|consen 220 LPLIVLGLAYTVIAVTLWGRRIPGDQQ-----------DRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATN 287 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccchh-----------chhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhH
Confidence 999999999999999999765321111 01334567889999999999999999999999999987654
No 2
>KOG4220|consensus
Probab=99.74 E-value=1.4e-17 Score=120.06 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCcccchhhhhhhHHHHHHHHHhhhhhccccccceeec--CCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHH
Q psy15243 2 DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPE--GYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFY 79 (150)
Q Consensus 2 ~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y 79 (150)
+.|+|+++|..++++.|++|+++..|.+.- |...+.. .....|..++.+.+ .......+..|.+|..+|.+.|
T Consensus 139 rakRTtkrA~~MI~~AW~iSfiLWaPaIl~-WqyivGkrTv~~~eC~iQFlsnp----~iTfGTAiAAFYlPVtiM~~LY 213 (503)
T KOG4220|consen 139 RAKRTTKRAGLMIGAAWVLSFVLWAPAILF-WQYIVGKRTVPDGECYIQFLSNP----AITFGTAIAAFYLPVTIMTILY 213 (503)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHh-hHhheeeeecCCCceEEEeecCc----eeehhHHHHHHHhhHHHHHHHH
Confidence 456999999999999999999999887764 6443322 23446999886544 2344556778999999999999
Q ss_pred HHHHHHHHhcchHH
Q psy15243 80 SQIVGHVFSHEKAL 93 (150)
Q Consensus 80 ~~I~~~l~~~~~~~ 93 (150)
++|++..++|.+..
T Consensus 214 ~rIyret~kR~k~~ 227 (503)
T KOG4220|consen 214 WRIYRETRKRQKEL 227 (503)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877654
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.74 E-value=3.6e-17 Score=118.94 Aligned_cols=113 Identities=10% Similarity=0.066 Sum_probs=77.0
Q ss_pred hhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHH---HHHHHHHHHhHHHHHHHHHHHHHH
Q psy15243 9 KALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL---FMFIICYCIPMGMIINFYSQIVGH 85 (150)
Q Consensus 9 ~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~---~~~~~~~~ipl~ii~~~y~~I~~~ 85 (150)
++...++..|+.+++.++|++.. ......+...+.|...++.++. ...+.. ....+.|++|+++|++||.+|.+.
T Consensus 146 ~~~~~i~~~Wi~s~l~~~P~l~~-~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~ 223 (338)
T PHA03234 146 HIGRNIGILFLASAMCAIPAALF-VKTEGKKGNYGKCNIHISSKKA-YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKA 223 (338)
T ss_pred hHHHHHHHHHHHHHHHHhhHhHe-eeeeecCCCCCcCcccCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566799999999998763 3222222223569877643321 122221 222345799999999999999999
Q ss_pred HHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy15243 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA 146 (150)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~ 146 (150)
++++. .++++|++|++++++++|++||+||+++.++..
T Consensus 224 L~~~~-----------------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~ 261 (338)
T PHA03234 224 LHALT-----------------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEI 261 (338)
T ss_pred HHhhh-----------------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 86420 134678999999999999999999999887654
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.74 E-value=3.3e-17 Score=121.73 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=85.6
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhccccccc-----eee-cCCcceEEEeecCCCcc--hhhhHHHHHHHHHHHhHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSR-----FVP-EGYLTSCTFDYLTPTES--IRFYVLFMFIICYCIPMGMII 76 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~-----~~~-~~~~~~C~~~~~~~~~~--~~~y~~~~~~~~~~ipl~ii~ 76 (150)
.+++++..+++++|+.++++++|+++. .+. ..+ ..+...|...+..+... ...|.+...++.|++|+++|+
T Consensus 143 ~~~~~a~~ii~~iWi~sll~s~P~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~ 221 (409)
T PHA03235 143 SAYRSTYKILGLTWFASLICSGPAPVY-TTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMT 221 (409)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHH-HhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999987542 211 111 12345697655433211 124556666778999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243 77 NFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147 (150)
Q Consensus 77 ~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~ 147 (150)
+||.+|++.++++.+ ++++|..+++++++++|++||+||+++.++..+
T Consensus 222 ~~Y~~I~~~l~~~~~-----------------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~ 269 (409)
T PHA03235 222 WFYTFFYRTLKRASY-----------------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSY 269 (409)
T ss_pred HHHHHHHHHHHhhhh-----------------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999986521 123467889999999999999999999887643
No 5
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.73 E-value=4.3e-17 Score=112.88 Aligned_cols=133 Identities=22% Similarity=0.456 Sum_probs=102.0
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCC-cceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGY-LTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~ 83 (150)
.+++++...++++|+.++++++|+.++ .+......+ ...|..++.... ...+.....++.+++|+.+++++|.+|.
T Consensus 96 ~~~~~~~~~i~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~i~ 172 (257)
T PF00001_consen 96 RTRRRARIIIILIWIISFLISLPPLFF-SWVYFVSDGSQSFCFIDFSSSS--SQIYFIYFFIVFFILPLIIILICYIRIL 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEESTCCCEEEEESCSSSH--HHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccceeeeeeeccccc
Confidence 667899999999999999999999875 444433333 567988764443 3456667777889999999999999999
Q ss_pred HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy15243 84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD 149 (150)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~~ 149 (150)
+.++++.++...+ .++..+.+.++|+|+++++.+++++|++||+|+.+..++..+.+
T Consensus 173 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~ 229 (257)
T PF00001_consen 173 RKLRRQRKRIKSQ---------SSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSP 229 (257)
T ss_dssp HHHHHHHHCTCCH---------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccccccccc---------cccccccccccccccccccccccccccccCCceeHHHHHHHHcC
Confidence 9999876642111 00113345578899999999999999999999999999887664
No 6
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.71 E-value=3e-17 Score=118.80 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=82.1
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcch-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI-RFYVLFMFIICYCIPMGMIINFYSQIV 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-~~y~~~~~~~~~~ipl~ii~~~y~~I~ 83 (150)
.+.+++..+++.+|+.+++.++|++++ +... ...+...|......++... ..|.....+..|++|+++|+++|.+|.
T Consensus 136 ~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~ 213 (323)
T PHA02834 136 KSISLSVLLSVAAWVCSVILSMPAMVL-YYVD-NTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKIL 213 (323)
T ss_pred CccchHHHHHHHHHHHHHHHHhhHHHH-HHhc-cCCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999998875 4322 2223346864322221111 112333446789999999999999999
Q ss_pred HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243 84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147 (150)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~ 147 (150)
+.++++.+ ++++|++|++++++++|++||+||++..++..+
T Consensus 214 ~~l~~~~~-----------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~ 254 (323)
T PHA02834 214 YTLKNCKN-----------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSL 254 (323)
T ss_pred HHHHhccC-----------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHH
Confidence 99876421 123577899999999999999999999887654
No 7
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.67 E-value=8.1e-16 Score=114.68 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=84.3
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhcccccccee-------ec--CCcceEEEeecCCCcc----hhhhHHHHHHHHHHHh
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFV-------PE--GYLTSCTFDYLTPTES----IRFYVLFMFIICYCIP 71 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~-------~~--~~~~~C~~~~~~~~~~----~~~y~~~~~~~~~~ip 71 (150)
.+++++...++.+|+.++++++|+++. .+... .+ .....|...++.+... ...+.....++.+++|
T Consensus 207 ~~~~~~~i~~~~iW~~s~l~slP~~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lP 285 (417)
T PHA02638 207 RTFNIGIILCIISWILSLIITSPAYFI-FEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIP 285 (417)
T ss_pred ecHhhhHhhHhHHHHHHHHHHHHHHHH-hhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 455666778889999999999999874 33211 11 1134787655433211 1123334456779999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243 72 MGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147 (150)
Q Consensus 72 l~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~ 147 (150)
++++++||.+|++.+++.. .++++|++|++++++++|++||+||+++.++..+
T Consensus 286 l~vmi~cY~~I~~~L~~~~-----------------------~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~ 338 (417)
T PHA02638 286 IIIFAFCYIKIILKLKQLK-----------------------KSKKTKSIIIVSIIIICSLICWIPLNIVILFATM 338 (417)
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------ccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999986431 1234677899999999999999999999888765
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.62 E-value=1.5e-14 Score=105.06 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=87.2
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhH-HHHHHHHHHHhHHHHHHHHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV-LFMFIICYCIPMGMIINFYSQIV 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~-~~~~~~~~~ipl~ii~~~y~~I~ 83 (150)
.+.+++..+++++|+.+++.+.|++.. + ....+.+...|...+..+......+. ....++.+++|+++++++|.+|.
T Consensus 150 ~~~~~~~~~~~~iWl~~~~~~~p~~~~-~-~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~ 227 (335)
T PHA03087 150 NTVKYGYIVSLVIWIISIIETTPILFV-Y-TTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKIL 227 (335)
T ss_pred cchhhhHHHHHHHHHHHHHHhccHhhe-e-eeeccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999988774 3 33333445678877753332122222 23446679999999999999999
Q ss_pred HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy15243 84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA 146 (150)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~ 146 (150)
+.++++.+ .++++|+.|++.+++++|++||+|+++..++..
T Consensus 228 ~~l~~~~~----------------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~ 268 (335)
T PHA03087 228 ITLKGINK----------------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYS 268 (335)
T ss_pred HHHHhccc----------------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875421 134568899999999999999999998776654
No 9
>KOG2087|consensus
Probab=98.82 E-value=3e-09 Score=76.46 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=87.7
Q ss_pred cccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV 83 (150)
Q Consensus 4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~ 83 (150)
+...|.+..+++..|+.+++.++.|++| .+.|... ..|.+...++.. ...|.+..++....+.+++|+++|.+++
T Consensus 142 ~~~lr~~~~ill~~wl~~~l~A~~Pl~g-~s~Y~~~---~vClPL~~~~~~-s~g~y~~~~l~~N~lafiiia~~Y~~iy 216 (363)
T KOG2087|consen 142 KAKLRPLVLILLLGWLFAFLMALLPLFG-ISSYGAS---SVCLPLHIEEPL-STGYYLVALLGLNLLAFIIIAFSYGKIY 216 (363)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccccC-CCCCccc---ceeeecccCCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445558888899999999999999997 5554332 569887655553 3325555666778899999999999999
Q ss_pred HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243 84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG 148 (150)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~ 148 (150)
..+++..... ...+.+.+|-++.++++-++||.|-+...+...++
T Consensus 217 ~~l~~~~~~~--------------------~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~ 261 (363)
T KOG2087|consen 217 CSLRKGDLSA--------------------TLISTSVAKRMAFLVFTDCICWCPIAFFKFSALIG 261 (363)
T ss_pred eeeecCCCcc--------------------ccchhhhhhCeeEEEEccccccCchheeeeHHhcC
Confidence 9998653210 11114667778888999999999998887766554
No 10
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.45 E-value=1.7e-05 Score=57.32 Aligned_cols=73 Identities=15% Similarity=0.369 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243 59 YVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY 138 (150)
Q Consensus 59 y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~ 138 (150)
+......+..++|+.++..+...+...++||.+++++. .++.+..+.+++.|+.|++...++.|+++++-.
T Consensus 180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n---------~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~ 250 (303)
T PF05296_consen 180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKN---------ATGFRDPSTEAHIRAIKTMISFLILYIIYFLSL 250 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC---------CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444458899999999999999999999999887532 122244566788999999999888888877665
Q ss_pred HH
Q psy15243 139 AV 140 (150)
Q Consensus 139 ~i 140 (150)
.+
T Consensus 251 ~~ 252 (303)
T PF05296_consen 251 IL 252 (303)
T ss_pred HH
Confidence 44
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.79 E-value=0.0005 Score=49.82 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=80.5
Q ss_pred cchhhhhhhHHHHHHHHHhhhhhccccccceeec---CCcceEEEeecC---CC-------cc----h----hhhHHHHH
Q psy15243 6 SYSKALMILILIYCYVIPWAMFPYLEKWSRFVPE---GYLTSCTFDYLT---PT-------ES----I----RFYVLFMF 64 (150)
Q Consensus 6 ~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~---~~~~~C~~~~~~---~~-------~~----~----~~y~~~~~ 64 (150)
+++.+...+..+.+.+.+++++..+. ..-...+ .+...|.. ++. .+ .. + ..|..+.-
T Consensus 120 ~~k~~~~~i~~v~~~s~~~~~~~~~~-~~i~~~~~~~~p~~~C~~-~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~g 197 (318)
T PF10324_consen 120 KPKFAIIVILIVFIISFLFSIPYFFR-YKIVEVSDPWVPPPNCSG-FPENYTFPRYMLNISELFTENDCLFFRIYFFIDG 197 (318)
T ss_pred CCCeeeeehHHHHHHHHHHHHHhhce-EEEEeccccccCCCceee-ccccccccccchhhhhhhhhhHHHHHHHHHHhhh
Confidence 45666677777888888888877764 3222111 12345861 110 00 00 0 01112222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243 65 IICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALT 144 (150)
Q Consensus 65 ~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~ 144 (150)
++.-++|.++..+......+.+++.++++++.. +.+..++.+.++++..+.+.|+++=+|+.+..++
T Consensus 198 i~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~-------------~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~ 264 (318)
T PF10324_consen 198 IFFKIIPCILLPILTILLIIELRKAKKRRKKLS-------------SSKSKKSDRTTKLILFMTISFLISELPQGIIFLL 264 (318)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc-------------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999999998776543211 1113456678999999999999999999999998
Q ss_pred Hhc
Q psy15243 145 GAF 147 (150)
Q Consensus 145 ~~~ 147 (150)
+.+
T Consensus 265 ~~~ 267 (318)
T PF10324_consen 265 ESF 267 (318)
T ss_pred HHH
Confidence 764
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.75 E-value=0.00049 Score=49.29 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=68.6
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVG 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~ 84 (150)
.++.+...+.+.-|+.+.+.++|.+. .++...+..+. .....+++. ......... ....+-.+..+++|..++.
T Consensus 115 ~~~~~~~~i~~i~wi~p~li~~~~~~--~~~~~f~~~~~--~~~~~d~~~-~~~~~~~~~-~~~~~~cv~~iv~Y~~i~~ 188 (283)
T PF10323_consen 115 WQPAKIWIIILIQWIPPLLISLPFFF--DTDFYFDNEEN--MSLFVDPEF-IQRNFLIAF-IFVSVTCVICIVCYGIIFI 188 (283)
T ss_pred ccccchhheeeeeehhhhhheeeeec--cCceeeecccc--eeeecCHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 56666777778889999999988665 44444444333 222212221 112222222 3344555567899999999
Q ss_pred HHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243 85 HVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY 138 (150)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~ 138 (150)
.+|++.+.. +.+.+++.++|.|.+.+.++.++++++.-.=+
T Consensus 189 ~iRk~~k~~-------------s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~ 229 (283)
T PF10323_consen 189 FIRKRNKKK-------------SKSSSRSRRREIRLAIQVFILFCAFFVILVYY 229 (283)
T ss_pred HHHHhhhhh-------------hHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999775411 11134456788898888887777665544433
No 13
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.50 E-value=0.00044 Score=48.90 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=76.5
Q ss_pred chhhhhhhHHHHHHHHHhhhhhcc---ccccceeec---CCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHH
Q psy15243 7 YSKALMILILIYCYVIPWAMFPYL---EKWSRFVPE---GYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYS 80 (150)
Q Consensus 7 ~~~~~~~~~~~W~~~~~~~~p~~~---~~~~~~~~~---~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~ 80 (150)
++.....+...|+.-.+.+..... + .++.+.. .....|.....+... ...|..+. .+.=++.+.+|+..-.
T Consensus 92 pk~i~~~~~~~Wilnlli~~~~~~~~~~-~~n~t~~~~~~~~~yCs~~~~~~~~-~~~~~~~~-~~~D~~fvgLM~~aSg 168 (265)
T PF03402_consen 92 PKYIGPSCLFCWILNLLININVLVYIIA-TPNSTNNNFTYSLGYCSSVPISYIV-SSLFATLL-SFRDVLFVGLMIWASG 168 (265)
T ss_pred CCccccHHHHHHHHHHhhhcceeEEEEe-cCccccCceeecCCeEEEEecchhh-hhhhhhHH-HhhHHHHHHHHHhhhh
Confidence 334455566779887766543222 2 1121111 123468765432221 22233232 2333566778888888
Q ss_pred HHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243 81 QIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALT 144 (150)
Q Consensus 81 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~ 144 (150)
.+.-.+.||+++.+.- ++.....+...|.||++++.+.|..|+..+.--.++...
T Consensus 169 yMV~~L~RH~q~VqhI---------hs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~ 223 (265)
T PF03402_consen 169 YMVFLLYRHHQQVQHI---------HSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIY 223 (265)
T ss_pred hheeeeeecccccccC---------cCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHH
Confidence 8889999998876432 222244556789999999999999999999888776554
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.35 E-value=0.011 Score=42.85 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy15243 124 AITLCALFVASWTPYAVVALTGAFGD 149 (150)
Q Consensus 124 l~~iv~~f~icw~P~~i~~l~~~~~~ 149 (150)
+..=.++|++||.|-.+-.+.+.+++
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~ 229 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGK 229 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577889999999999888887653
No 15
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.20 E-value=0.012 Score=41.80 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=69.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhcccccccee-ecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243 5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFV-PEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~ 83 (150)
.+.+.+..+++..|+.++....++.+. .+-.. ++++ .-...+++++. -..+...........-.+++..++..++
T Consensus 106 fs~~~T~~~i~~~~~~~~~~~~~~~~~-~~C~~~y~~~--~~~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~~~lni~t~ 181 (274)
T PF10328_consen 106 FSFKNTIILIAFIWLLSIIISTILYFP-DGCYFYYDPE--TWSWSYPTDPP-CGNYSWYFDFYKNFILVIISNILNIITF 181 (274)
T ss_pred cCccceehhhhHHHHHHHHHHHHhhhc-CCCcceeccc--eeeeecCCCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999998776655442 22211 1211 11112212211 1122222222333444555677888888
Q ss_pred HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15243 84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVA 142 (150)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~ 142 (150)
.++++..++. ...+++.++++++|.+..+....--..|.+.+.=|....
T Consensus 182 ikl~~~~~~~----------~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~ 230 (274)
T PF10328_consen 182 IKLRKFRKKI----------SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIP 230 (274)
T ss_pred HHHHHhhhhc----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665543 011222445567788888888888888888876665543
No 16
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.56 E-value=0.029 Score=41.57 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q psy15243 120 IAKTAITLCALFVASWTPYAVVAL 143 (150)
Q Consensus 120 ~~~~l~~iv~~f~icw~P~~i~~l 143 (150)
+-+-.+.|.++|.+||+|..+=-+
T Consensus 242 IK~kFf~I~lVF~iCWlpNIINg~ 265 (405)
T PF02101_consen 242 IKIKFFKIMLVFYICWLPNIINGS 265 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhHH
Confidence 344567888999999999866444
No 17
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.37 E-value=0.23 Score=35.13 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=45.7
Q ss_pred CcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHH
Q psy15243 41 YLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120 (150)
Q Consensus 41 ~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 120 (150)
....|.+...-.+.....+.. ...++. .+.++.|......++++.+ ++.++++|+
T Consensus 131 ~~~~C~pp~a~~~~~~~~~~~----~~~~in-v~tvivY~i~~~~~~~k~~--------------------~~~~~~~kv 185 (257)
T PF10320_consen 131 TIVICNPPLAFHGTASQIWSY----SNIIIN-VITVIVYIITIIIFKRKSR--------------------SNSSRSKKV 185 (257)
T ss_pred ccccCCCccccCccHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHcc--------------------ccchhHHHH
Confidence 345787754433321222221 222332 2335666666666665422 134667899
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243 121 AKTAITLCALFVASWTPYAVVALT 144 (150)
Q Consensus 121 ~~~l~~iv~~f~icw~P~~i~~l~ 144 (150)
.|.+.+.++.|+.+|.=-.+...+
T Consensus 186 ~ksL~v~v~i~i~~w~~s~~~~~v 209 (257)
T PF10320_consen 186 FKSLKVTVIIFIFSWFLSQIINTV 209 (257)
T ss_pred HHHhhhheeeeeHHHHHHHHHHHH
Confidence 999999999999999765554443
No 18
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=95.12 E-value=0.28 Score=35.74 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHH
Q psy15243 66 ICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFV 132 (150)
Q Consensus 66 ~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~ 132 (150)
.....-++.+++.+...+.++|+.+.+. ...++++.+.++|+-.+.++.++++-++
T Consensus 202 ~~s~~~~~~iii~N~lm~~Klr~~k~~l-----------~~~~~s~~~~KAE~SLT~Tmi~mliP~i 257 (307)
T PF10322_consen 202 FFSIFWMISIIILNILMFFKLRKLKSSL-----------SSQRRSKQSRKAERSLTLTMISMLIPYI 257 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cchhhcccchhhheeHHHHHHHHHHHHH
Confidence 3344555666788888888888764211 0111244556778877777777766554
No 19
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=95.09 E-value=0.3 Score=35.44 Aligned_cols=70 Identities=9% Similarity=0.039 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243 62 FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV 141 (150)
Q Consensus 62 ~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~ 141 (150)
.........-..+..+++..+++.+++.++++ ++++.++.+++.+.+.+=.++-.+|-+|..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i----------------S~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~ 259 (303)
T PF10327_consen 196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI----------------SKQTYQKHKEAVRSLIAQFATSSICILPPFIF 259 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566667777888899999888766544 33455677788888887777778888998887
Q ss_pred HHHHhc
Q psy15243 142 ALTGAF 147 (150)
Q Consensus 142 ~l~~~~ 147 (150)
.+...+
T Consensus 260 ~~~~~~ 265 (303)
T PF10327_consen 260 VVVVIF 265 (303)
T ss_pred hhhhee
Confidence 765443
No 20
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=93.39 E-value=0.76 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=32.2
Q ss_pred eeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcch
Q psy15243 36 FVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEK 91 (150)
Q Consensus 36 ~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~ 91 (150)
..+.+....|.... + ...+-+...-+--++-.+.+++.|..|+..+|++.|
T Consensus 149 ~~Y~~~g~WCWi~~---~--~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 149 PGYGPAGAWCWIPS---R--YEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred CcccccCcEEEECC---C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33455567897652 1 112334444444556677779999999999998754
No 21
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=91.47 E-value=4.4 Score=29.92 Aligned_cols=41 Identities=5% Similarity=0.008 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeec
Q psy15243 8 SKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYL 50 (150)
Q Consensus 8 ~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 50 (150)
+++...=+..|.+..+..+..+. .++.+.|+..+.|.....
T Consensus 134 ~~s~yfH~~aW~iP~~~ti~vL~--~~~VdgD~ltGiC~Vg~~ 174 (328)
T PF01534_consen 134 KKSSYFHLVAWGIPAVLTIAVLA--LRKVDGDELTGICFVGNQ 174 (328)
T ss_pred hhcchhhhHHhhhhHHHHHHHHH--hcccccccccceeEEeCC
Confidence 34455557789888877766555 556666676778988743
No 22
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=91.38 E-value=2.2 Score=31.21 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243 59 YVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY 138 (150)
Q Consensus 59 y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~ 138 (150)
|........-++-.+...++|..+...+++..+.. .+++..+++++..-...++.+...+.+.=|
T Consensus 195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~---------------~s~~~~k~~~qI~iQs~iIC~f~~i~a~iy 259 (313)
T PF10321_consen 195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS---------------TSSQLSKAQRQIFIQSVIICFFHAIAAVIY 259 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55444445555556777889999888887664321 133445667777777777777777777666
Q ss_pred HHHHH
Q psy15243 139 AVVAL 143 (150)
Q Consensus 139 ~i~~l 143 (150)
..+..
T Consensus 260 v~m~f 264 (313)
T PF10321_consen 260 VYMQF 264 (313)
T ss_pred Heeee
Confidence 55443
No 23
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=88.97 E-value=0.12 Score=35.88 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy15243 119 RIAKTAITLCALFVASWTPY 138 (150)
Q Consensus 119 r~~~~l~~iv~~f~icw~P~ 138 (150)
+..+....+...+.++|...
T Consensus 195 ~~~~~~~~L~~llg~~w~~~ 214 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFG 214 (242)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHHHHHheee
Confidence 36677777777788888764
No 24
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=88.92 E-value=7 Score=28.25 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy15243 124 AITLCALFVASWTPYAVVALT 144 (150)
Q Consensus 124 l~~iv~~f~icw~P~~i~~l~ 144 (150)
+..+.++.+++.+|..+..++
T Consensus 200 L~~la~~~i~~~~P~~i~~~v 220 (283)
T PF02076_consen 200 LLALALVIILIYLPLSIYYLV 220 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666677788899999999988
No 25
>KOG4193|consensus
Probab=88.67 E-value=2.4 Score=34.04 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15243 15 ILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHV 86 (150)
Q Consensus 15 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l 86 (150)
+..|....+.....+......+........|..+-... ..+. |+-|+.+++.+++.++...
T Consensus 432 ~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~----~~~~-------F~GPv~~ii~~Ni~~Fv~t 492 (610)
T KOG4193|consen 432 LYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNG----FIWS-------FLGPVTLIILVNIVMFVVT 492 (610)
T ss_pred HHHhhhhHHHHhheeEEeccCccccccCCceEEecCCc----eEEE-------EehHHHHHHHHHHHHHHHH
Confidence 57787766554433321022221222333586652111 1111 6677777777775555444
No 26
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=87.92 E-value=1.4 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.372 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Q psy15243 115 SAEVRIAKTAITLCALFVASWT-PYAVVAL 143 (150)
Q Consensus 115 ~~~~r~~~~l~~iv~~f~icw~-P~~i~~l 143 (150)
++-+|.++.+++==++|+++|+ |+.+-..
T Consensus 5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~ 34 (76)
T PF11970_consen 5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRM 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778899999999999999 9765443
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=87.11 E-value=9.3 Score=27.59 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=54.1
Q ss_pred chhhhhhhHHHHHHHHHhhhhhccccccceeecCC----cceEEEe---ecCCCcchhhhHHHHHHHHHHHhHHHHHHHH
Q psy15243 7 YSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGY----LTSCTFD---YLTPTESIRFYVLFMFIICYCIPMGMIINFY 79 (150)
Q Consensus 7 ~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~----~~~C~~~---~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y 79 (150)
+.-..+.+..+|+.++..-...... -=.+.++.. .-.|... ...++. ...-++..++.+.+|..+ ...|
T Consensus 131 s~~iyiWL~~vWils~~v~~~l~~~-nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P--~~IqiiE~ilQ~~IPi~I-l~iY 206 (305)
T PF04789_consen 131 SPVIYIWLLLVWILSIGVVYSLMSN-NCRYRYNKWSKHYQLNCETCNSVVDISPP--RGIQIIEIILQFGIPIFI-LVIY 206 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC-CCeeecccccccEEEEcCCCCeeEeeCCC--CchhHHHHHHHHhHHHHH-HHHH
Confidence 3445667777888887654433221 112222211 1135332 111111 123356778899999887 5556
Q ss_pred HHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHH
Q psy15243 80 SQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVA 133 (150)
Q Consensus 80 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~i 133 (150)
+.+.-++-.-. +....+.|.+.+|.-..+.++|-+
T Consensus 207 iAIIiKI~~MK-------------------kssLnK~Ei~ILKQAifIFvlFQ~ 241 (305)
T PF04789_consen 207 IAIIIKIIKMK-------------------KSSLNKNEITILKQAIFIFVLFQA 241 (305)
T ss_pred HHHHHHHHHHh-------------------hccCCchhHHHHHHHHHHHHHHHH
Confidence 65554443110 222345688888887777666644
No 28
>KOG2575|consensus
Probab=82.44 E-value=2 Score=32.54 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243 117 EVRIAKTAITLCALFVASWTPYAVV 141 (150)
Q Consensus 117 ~~r~~~~l~~iv~~f~icw~P~~i~ 141 (150)
-.|..+.-.+++++|.++|.|+...
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999999998654
No 29
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=81.96 E-value=15 Score=25.84 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHh
Q psy15243 66 ICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASW 135 (150)
Q Consensus 66 ~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw 135 (150)
..+++-+++.++++..+.+++++..++ .++.|++..++..+..+++.+.=
T Consensus 175 ~~~i~~~ii~i~~~~~~~~~l~~~~~~--------------------~~~~er~L~~is~~~~~~~~~~~ 224 (275)
T PF02118_consen 175 IYFIIIIIITIITNIITYRRLRKLSKR--------------------IKSVERNLTIISFIISFVQLLIA 224 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666777777777654321 23456677766666555554433
No 30
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=80.13 E-value=19 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243 114 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147 (150)
Q Consensus 114 ~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~ 147 (150)
++..++..|.+.+=.+.=.++..|-....++..+
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~ 252 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQF 252 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445566666665555556666766555555443
No 31
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=71.18 E-value=38 Score=24.83 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15243 114 SSAEVRIAKTAITLCALFVASWTPYAVVAL 143 (150)
Q Consensus 114 ~~~~~r~~~~l~~iv~~f~icw~P~~i~~l 143 (150)
..++.|+.+++..++.+..+.-+-+....+
T Consensus 225 l~ENl~slr~L~p~~~~~~i~~~~~~~~~~ 254 (324)
T PF10292_consen 225 LEENLRSLRLLKPFIILSSIFIFFYIFASI 254 (324)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888877666666555555544444
No 32
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=68.29 E-value=13 Score=22.35 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy15243 68 YCIPMGMIINFYSQIVGHVFSHEKALREQAK 98 (150)
Q Consensus 68 ~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~ 98 (150)
++..+++++++|..+.|--+++.+++.+.-+
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3444555678888888877777666655433
No 33
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=68.14 E-value=19 Score=20.22 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHHHhcchH
Q psy15243 61 LFMFIICYCIPMGMI-INFYSQIVGHVFSHEKA 92 (150)
Q Consensus 61 ~~~~~~~~~ipl~ii-~~~y~~I~~~l~~~~~~ 92 (150)
.+..++..+.|+.++ .++-+...+.+.++.++
T Consensus 22 Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566787776 44556677777766553
No 34
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=54.16 E-value=21 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15243 117 EVRIAKTAITLCALFVASW 135 (150)
Q Consensus 117 ~~r~~~~l~~iv~~f~icw 135 (150)
.+|.-.+++.++++|++-|
T Consensus 35 ~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 35 MRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544
No 35
>PF13853 7tm_4: Olfactory receptor
Probab=53.81 E-value=0.22 Score=31.95 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy15243 58 FYVLFMFIICYCIPMGMIINFYSQIVGHVFSH 89 (150)
Q Consensus 58 ~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~ 89 (150)
.+.........+.|+.++++.|..|...+.|.
T Consensus 56 ~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki 87 (144)
T PF13853_consen 56 IVGFVVAIFILLGPLLLILFSYIRILRAVLKI 87 (144)
T ss_pred eeeecccceeEEEEeeccccceeEEEehhhcc
Confidence 34444445567899999999999999977654
No 36
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=53.25 E-value=13 Score=26.85 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHH-HHHHHHHHHhHHHHHHH
Q psy15243 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAI-TLCALFVASWTPYAVVA 142 (150)
Q Consensus 64 ~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~-~iv~~f~icw~P~~i~~ 142 (150)
......+.+.++++|-.++++++++..+.. +++.++-+++..+.+. =.++-.+....|..+..
T Consensus 201 ~~~im~~s~~iii~cg~~~~~~i~~~~~~~----------------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~ 264 (307)
T PF10326_consen 201 MCIIMSISFFIIIYCGIKIYKKIKKLSSIM----------------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVF 264 (307)
T ss_pred cchhHHhHHHHHHHHHhhhHHHHhcccccc----------------ChhhHHHHHHHHHHHHHHhhhhheeeecchhhee
Confidence 344567888889999999999995432210 2223344555555553 33444556677776554
Q ss_pred HH
Q psy15243 143 LT 144 (150)
Q Consensus 143 l~ 144 (150)
..
T Consensus 265 ~~ 266 (307)
T PF10326_consen 265 IL 266 (307)
T ss_pred ee
Confidence 43
No 37
>KOG1380|consensus
Probab=52.69 E-value=7.5 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHhhhhhcccccc
Q psy15243 11 LMILILIYCYVIPWAMFPYLEKWS 34 (150)
Q Consensus 11 ~~~~~~~W~~~~~~~~p~~~~~~~ 34 (150)
++.++-.|+.+++-++||++| |.
T Consensus 219 rihiinTWvGavVGAIPPLMG-wA 241 (409)
T KOG1380|consen 219 RIHIINTWVGAVVGAIPPLMG-WA 241 (409)
T ss_pred hhhhhhhHHHHHhccCCccch-hh
Confidence 345677899999999999999 83
No 38
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]
Probab=52.13 E-value=1.2e+02 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcch
Q psy15243 66 ICYCIPMGMIINFYSQIVGHVFSHEK 91 (150)
Q Consensus 66 ~~~~ipl~ii~~~y~~I~~~l~~~~~ 91 (150)
+..++--.+-.+.|.|+.+.+.-+..
T Consensus 404 ii~vl~S~isa~YYlRvv~~m~~~~~ 429 (475)
T COG1007 404 VIAVLNSAISAYYYLRVVKAMYFEEP 429 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33455666778999999999987654
No 39
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=51.89 E-value=25 Score=21.70 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHHHHHhcchHH
Q psy15243 70 IPMGMIINFYSQIVGHVFSHEKAL 93 (150)
Q Consensus 70 ipl~ii~~~y~~I~~~l~~~~~~~ 93 (150)
+|+++++..|..++|--+++.++.
T Consensus 7 l~~vv~~~i~yf~iRPQkKr~Ke~ 30 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQAQER 30 (113)
T ss_pred HHHHHHHHHHHheechHHHHHHHH
Confidence 344444433333444434443333
No 40
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=50.97 E-value=27 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243 115 SAEVRIAKTAITLCALFVASWTPYAVV 141 (150)
Q Consensus 115 ~~~~r~~~~l~~iv~~f~icw~P~~i~ 141 (150)
..-.|..+.-.+++.+|.++|.|+...
T Consensus 218 ~~~~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 218 FSIKRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999654
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.60 E-value=1.6e+02 Score=24.94 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243 118 VRIAKTAITLCALFVASWTPYAVVALTGAFG 148 (150)
Q Consensus 118 ~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~ 148 (150)
.-..-.++.+.+.|+++|+-..+..+....+
T Consensus 457 tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G 487 (806)
T PF05478_consen 457 TGGNFLMAGVGLSFLFSWFLMLLVLFYFLVG 487 (806)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577788889999998877776665544
No 42
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=49.11 E-value=38 Score=19.63 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=16.2
Q ss_pred HhHHH-HHHHHHHHHHHHHhcchHHHHHH
Q psy15243 70 IPMGM-IINFYSQIVGHVFSHEKALREQA 97 (150)
Q Consensus 70 ipl~i-i~~~y~~I~~~l~~~~~~~~~~~ 97 (150)
+|+++ +++.|..+.+--+++.++.++..
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~~m~ 35 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHKKLI 35 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHHHHH
Confidence 34333 55677777776666665554443
No 43
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=47.33 E-value=1.1e+02 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHhHH-HHHHHHHHHHHHHHhcc
Q psy15243 66 ICYCIPMG-MIINFYSQIVGHVFSHE 90 (150)
Q Consensus 66 ~~~~ipl~-ii~~~y~~I~~~l~~~~ 90 (150)
+.+++|+. ...+.+..|++.+.+..
T Consensus 188 ~~~~~~l~~~~~~~~~wi~~sL~~t~ 213 (295)
T PF06814_consen 188 IFFLLPLCILDLFFIVWIFRSLSKTI 213 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566763 34677788888887643
No 44
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.90 E-value=48 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy15243 58 FYVLFMFIICYCIPMGMIINFYSQIVGHVFSH 89 (150)
Q Consensus 58 ~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~ 89 (150)
.|.++.+.+-.++|+.++.-++..|.+..+..
T Consensus 160 ~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~ 191 (194)
T PF05241_consen 160 FYFVFPNGIWIVVPLLLLYQSWKEIARAFRAA 191 (194)
T ss_pred eehhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778889999999999999988777654
No 45
>COG3924 Predicted membrane protein [Function unknown]
Probab=45.24 E-value=38 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy15243 64 FIICYCIPMGMIINFYSQIVGHVF 87 (150)
Q Consensus 64 ~~~~~~ipl~ii~~~y~~I~~~l~ 87 (150)
-..++.+|++.++.|+..| +.+.
T Consensus 47 E~aCi~lPllFi~l~~~mv-kfif 69 (80)
T COG3924 47 EMACILLPLLFIVLCWAMV-KFIF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhh
Confidence 4567889999999998765 4443
No 46
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=45.11 E-value=64 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=12.8
Q ss_pred HHhHHH-HHHHHHHHHHHHHhcchHH
Q psy15243 69 CIPMGM-IINFYSQIVGHVFSHEKAL 93 (150)
Q Consensus 69 ~ipl~i-i~~~y~~I~~~l~~~~~~~ 93 (150)
++|+++ +++.|..+.|--+++.++.
T Consensus 7 ll~lv~i~~i~yF~~iRPQkKr~K~~ 32 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRKAMQAT 32 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 345543 4566766655444444433
No 47
>KOG4564|consensus
Probab=44.77 E-value=20 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHh
Q psy15243 69 CIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASW 135 (150)
Q Consensus 69 ~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw 135 (150)
++++++-.+..++|.+.+-+..+. . +.......+|++|-..+++=+|.+.+
T Consensus 317 ~~ai~vNf~flinIvrILv~KLr~---------------~-~~~~~~~y~K~vKaTLvLIPLfGI~~ 367 (473)
T KOG4564|consen 317 LLAILVNFIFLINIVRILVTKLRA---------------S-NASETDQYRKLVKATLVLIPLFGIHY 367 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---------------c-cccchHHHHHHHHHHHHHHHHcCCee
Confidence 344555556667777776532211 1 11122236777887777777775543
No 48
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=44.22 E-value=31 Score=19.85 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhcchH
Q psy15243 73 GMIINFYSQIVGHVFSHEKA 92 (150)
Q Consensus 73 ~ii~~~y~~I~~~l~~~~~~ 92 (150)
+++++.|....+--+++.++
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~ 29 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKE 29 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHHH
Confidence 55566677766655555443
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=44.22 E-value=62 Score=18.59 Aligned_cols=28 Identities=29% Similarity=0.728 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15243 59 YVLFMFIICYCIPMGMIINFYSQIVGHVF 87 (150)
Q Consensus 59 y~~~~~~~~~~ipl~ii~~~y~~I~~~l~ 87 (150)
+.++.. ++...|+.++.+.|..=.+..+
T Consensus 21 ~sI~s~-l~Cc~PlGi~Ai~~s~kv~~~~ 48 (82)
T PF04505_consen 21 LSIFST-LCCCWPLGIVAIVYSSKVRSRY 48 (82)
T ss_pred HHHHHH-HHHHhhHHHHHheechhhHHHH
Confidence 344433 3445688888888776444443
No 50
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=39.75 E-value=1.4e+02 Score=21.39 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHh
Q psy15243 113 QSSAEVRIAKTAIT-LCALFVASWTPYAVVALTGA 146 (150)
Q Consensus 113 ~~~~~~r~~~~l~~-iv~~f~icw~P~~i~~l~~~ 146 (150)
..+.++|..+.+.+ +.+-+++.-.|.........
T Consensus 224 T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~ 258 (302)
T PF10318_consen 224 TRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISII 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 34556666665543 33334445568776665443
No 51
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=39.49 E-value=66 Score=20.47 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243 115 SAEVRIAKTAITLCALFVASWTPYAVV 141 (150)
Q Consensus 115 ~~~~r~~~~l~~iv~~f~icw~P~~i~ 141 (150)
+..++.....+.....|++|+.=++..
T Consensus 32 ~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~ 58 (133)
T PF04238_consen 32 KLHRKLMLTAFVLSALFLVSYLYYHFL 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566677777777777766544
No 52
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=38.32 E-value=63 Score=17.40 Aligned_cols=21 Identities=10% Similarity=-0.039 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q psy15243 115 SAEVRIAKTAITLCALFVASW 135 (150)
Q Consensus 115 ~~~~r~~~~l~~iv~~f~icw 135 (150)
++++|.+.++...+++.++-|
T Consensus 37 r~R~r~~~~~~~li~aLi~v~ 57 (64)
T COG4068 37 RKRQRNFMILMFLILALILVM 57 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666555554444444
No 53
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=37.99 E-value=90 Score=18.99 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhcchHHHHH
Q psy15243 75 IINFYSQIVGHVFSHEKALREQ 96 (150)
Q Consensus 75 i~~~y~~I~~~l~~~~~~~~~~ 96 (150)
.++.|..+.+--+++.++..+.
T Consensus 28 ~~i~yf~~~RpqkK~~k~~~~~ 49 (106)
T PRK05585 28 FAIFYFLIIRPQQKRQKEHKKM 49 (106)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3456777766666665555443
No 54
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=35.94 E-value=89 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhhhhhcc
Q psy15243 13 ILILIYCYVIPWAMFPYL 30 (150)
Q Consensus 13 ~~~~~W~~~~~~~~p~~~ 30 (150)
.-...|..+.++++|++=
T Consensus 200 ~~~l~w~aA~LFAlp~lR 217 (256)
T PF14494_consen 200 PPMLTWMAAMLFALPPLR 217 (256)
T ss_pred cchHHHHHHHHHhhhhHh
Confidence 335677777777777664
No 55
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=33.73 E-value=80 Score=16.80 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcch
Q psy15243 68 YCIPMGMIINFYSQIVGHVFSHEK 91 (150)
Q Consensus 68 ~~ipl~ii~~~y~~I~~~l~~~~~ 91 (150)
|++.+++.++.|.-|+.--+++.+
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344455667788888776665543
No 56
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.83 E-value=72 Score=18.02 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=14.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243 113 QSSAEVRIAKTAITLCALFVASWTPY 138 (150)
Q Consensus 113 ~~~~~~r~~~~l~~iv~~f~icw~P~ 138 (150)
..++++|-..++++=+.+|++.+.=+
T Consensus 13 ~~~R~r~Y~i~M~~Ri~~fvlA~~~~ 38 (73)
T PF11298_consen 13 QRRRRRRYLIMMGIRIPCFVLAAVVY 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555565555443
No 57
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=31.52 E-value=99 Score=18.04 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCcceEEEeecCCC-cchhhhHHHHHHHHHHHhHHH
Q psy15243 40 GYLTSCTFDYLTPT-ESIRFYVLFMFIICYCIPMGM 74 (150)
Q Consensus 40 ~~~~~C~~~~~~~~-~~~~~y~~~~~~~~~~ipl~i 74 (150)
+....|..++...+ .+...|..+......++|+.+
T Consensus 9 ~~C~~CG~d~~~~~adDgPA~fvi~ivg~ivv~~~l 44 (86)
T PF06170_consen 9 PRCPHCGLDYSHARADDGPAYFVILIVGHIVVPLAL 44 (86)
T ss_pred CcccccCCccccCCcCccchhHHHHHHHHHHHHHHH
Confidence 34456888876543 334556555554444444444
No 58
>PHA01815 hypothetical protein
Probab=31.21 E-value=79 Score=15.97 Aligned_cols=20 Identities=10% Similarity=0.527 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy15243 63 MFIICYCIPMGMIINFYSQI 82 (150)
Q Consensus 63 ~~~~~~~ipl~ii~~~y~~I 82 (150)
.+.+.|++.++++...|+++
T Consensus 10 vfllaflitliilmt~~irv 29 (55)
T PHA01815 10 VFLLAFLITLIILMTLHIRV 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666554
No 59
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=29.39 E-value=54 Score=20.76 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=21.8
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHH
Q psy15243 44 SCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINF 78 (150)
Q Consensus 44 ~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~ 78 (150)
.|..+|..++.. ..+-....++.+.+|..+.++.
T Consensus 64 ~CIDsWkAdpeL-nn~rymWNilMYaIPy~L~Ala 97 (141)
T PRK13743 64 ACIDSWKADPEL-NNFRYMWNILMYVIPYTLWALA 97 (141)
T ss_pred HHHHhhhcChhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 488888776642 2244455667788887776544
No 60
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=28.99 E-value=76 Score=15.10 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy15243 61 LFMFIICYCIPMGMIINFYSQI 82 (150)
Q Consensus 61 ~~~~~~~~~ipl~ii~~~y~~I 82 (150)
.+...+..++|.+.+++.|+..
T Consensus 8 fiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 8 FVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 3444566778988888888753
No 61
>PF07779 Cas1_AcylT: 10 TM Acyl Transferase domain found in Cas1p; InterPro: IPR012419 The members of this family are sequences that are similar to a region of Cas1p protein (Q8X227 from SWISSPROT). This is an O-acetyltransferase that in Cryptococcus neoformans var. neoformans was shown to be required for O-acetylation of its capsular polysaccharide []. The capsule is this organism's most obvious virulence factor [].
Probab=28.91 E-value=2.3e+02 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15243 118 VRIAKTAITLCALFVAS 134 (150)
Q Consensus 118 ~r~~~~l~~iv~~f~ic 134 (150)
.++.-.++++++-|.+|
T Consensus 76 l~~~~~~g~il~y~y~c 92 (488)
T PF07779_consen 76 LRALAEFGLILLYFYLC 92 (488)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35555555555555444
No 62
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=28.01 E-value=5.3 Score=22.94 Aligned_cols=9 Identities=22% Similarity=1.173 Sum_probs=6.9
Q ss_pred HHHHHHhHH
Q psy15243 129 ALFVASWTP 137 (150)
Q Consensus 129 ~~f~icw~P 137 (150)
++|+-||.|
T Consensus 71 VMyLSCWGP 79 (79)
T PF12609_consen 71 VMYLSCWGP 79 (79)
T ss_pred eEEEeccCc
Confidence 457889988
No 63
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=27.88 E-value=1.1e+02 Score=16.40 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=7.1
Q ss_pred cCcchHHHHHHHHH
Q psy15243 111 EGQSSAEVRIAKTA 124 (150)
Q Consensus 111 ~~~~~~~~r~~~~l 124 (150)
+.++++|.|+.-.+
T Consensus 11 ~~~k~~E~~~flfl 24 (56)
T PF06796_consen 11 KSTKRSELKAFLFL 24 (56)
T ss_pred cchhHHHHHHHHHH
Confidence 34455666654433
No 64
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=27.42 E-value=2.2e+02 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy15243 64 FIICYCIPMGMIINFYSQIVGHVFSH 89 (150)
Q Consensus 64 ~~~~~~ipl~ii~~~y~~I~~~l~~~ 89 (150)
..+..++|.++....|..+...+..+
T Consensus 151 ~~l~~~i~~i~~~~~y~~~~yil~d~ 176 (243)
T PF06161_consen 151 LLLLLIIPGIIVSYSYSMVPYILADN 176 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556777777778888887777654
No 65
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=25.60 E-value=2e+02 Score=22.12 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy15243 64 FIICYCIPMGMIINFYSQIVGHVF 87 (150)
Q Consensus 64 ~~~~~~ipl~ii~~~y~~I~~~l~ 87 (150)
+++.+++|+++.++.-......+-
T Consensus 285 ~~vtl~iPl~i~llL~llLs~Imc 308 (386)
T PF05510_consen 285 FLVTLAIPLIIALLLLLLLSYIMC 308 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 346677888776665555444443
No 66
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=24.69 E-value=92 Score=14.61 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy15243 61 LFMFIICYCIPMGMIINFYSQI 82 (150)
Q Consensus 61 ~~~~~~~~~ipl~ii~~~y~~I 82 (150)
.+...+..++|.+.+++.|+..
T Consensus 8 fiAt~Lfi~iPt~FLiilYvqT 29 (33)
T TIGR03038 8 FIATLLFILVPTVFLLILYIQT 29 (33)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 3444566778988888888653
No 67
>PF10445 DUF2456: Protein of unknown function (DUF2456); InterPro: IPR018852 This entry represents a family of uncharacterised proteins.
Probab=23.30 E-value=1.5e+02 Score=17.68 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q psy15243 117 EVRIAKTAITLCALFVASWTPYA 139 (150)
Q Consensus 117 ~~r~~~~l~~iv~~f~icw~P~~ 139 (150)
-.++.|-+..-+..|++.|-|-.
T Consensus 26 v~~~~rgli~av~~f~~~WP~ti 48 (94)
T PF10445_consen 26 VQQAIRGLILAVLIFLLLWPITI 48 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 45788899999999999998863
No 68
>KOG4686|consensus
Probab=23.05 E-value=3.4e+02 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.581 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q psy15243 119 RIAKTAITLCALFVASWTPYAVVA 142 (150)
Q Consensus 119 r~~~~l~~iv~~f~icw~P~~i~~ 142 (150)
-...++.++.+.|.+-|.|+..+.
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg 287 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLG 287 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999999999997654
No 69
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=22.58 E-value=3.5e+02 Score=21.52 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15243 117 EVRIAKTAITLCALFVAS 134 (150)
Q Consensus 117 ~~r~~~~l~~iv~~f~ic 134 (150)
+.|-.+-+.++++.|-++
T Consensus 278 kS~yL~~Ia~lvi~Ygi~ 295 (491)
T PF03219_consen 278 KSKYLLCIALLVIAYGIS 295 (491)
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 556677777888877665
No 70
>CHL00080 psbM photosystem II protein M
Probab=22.49 E-value=1.1e+02 Score=14.49 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy15243 61 LFMFIICYCIPMGMIINFYSQI 82 (150)
Q Consensus 61 ~~~~~~~~~ipl~ii~~~y~~I 82 (150)
.+...+...+|.+.+++.|++.
T Consensus 8 fiAt~LFi~iPt~FLlilyvkT 29 (34)
T CHL00080 8 FIATALFILVPTAFLLIIYVKT 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 3444566778888888888653
No 71
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.88 E-value=1.5e+02 Score=16.03 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHH-HHHhHH
Q psy15243 115 SAEVRIAKTAITLCALF-VASWTP 137 (150)
Q Consensus 115 ~~~~r~~~~l~~iv~~f-~icw~P 137 (150)
++++|-..+...++..+ ++|-+-
T Consensus 26 r~RrRrc~~~v~~v~~~~~~c~~S 49 (60)
T PF06072_consen 26 RRRRRRCRLAVAIVFAVVALCVLS 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444444444 556544
No 72
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=20.88 E-value=1.3e+02 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243 119 RIAKTAITLCALFVASWTPYAVVALTGAF 147 (150)
Q Consensus 119 r~~~~l~~iv~~f~icw~P~~i~~l~~~~ 147 (150)
|...=...+++..++-|+|..++......
T Consensus 63 K~~~G~~~~~~li~iiw~PLllfS~~n~~ 91 (422)
T PF12166_consen 63 KYLMGGLLLLLLIIIIWFPLLLFSSGNPV 91 (422)
T ss_pred EeeehHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 33333556677778889999988876654
No 73
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=20.85 E-value=1.6e+02 Score=16.26 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=6.0
Q ss_pred HHHhHHHHH
Q psy15243 132 VASWTPYAV 140 (150)
Q Consensus 132 ~icw~P~~i 140 (150)
.+||+|+..
T Consensus 43 ~~~~iP~~~ 51 (73)
T PF10601_consen 43 PCCCIPFCC 51 (73)
T ss_pred HHhhHhhcc
Confidence 357888754
No 74
>PF15102 TMEM154: TMEM154 protein family
Probab=20.58 E-value=12 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=7.3
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy15243 66 ICYCIPMGMIINFYSQI 82 (150)
Q Consensus 66 ~~~~ipl~ii~~~y~~I 82 (150)
+..++|++++++.-+.+
T Consensus 59 LmIlIP~VLLvlLLl~v 75 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSV 75 (146)
T ss_pred EEEeHHHHHHHHHHHHH
Confidence 33445544443333333
No 75
>KOG4016|consensus
Probab=20.56 E-value=3.1e+02 Score=19.18 Aligned_cols=36 Identities=6% Similarity=0.080 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhhhhhccccccceeecCCcceEEEe
Q psy15243 12 MILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFD 48 (150)
Q Consensus 12 ~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 48 (150)
++=+..|+++++......-+.|.+ ..+..+..|...
T Consensus 27 i~R~~~~lFsliVf~si~~eGy~n-~~~~~~~~Ciyn 62 (233)
T KOG4016|consen 27 ILRVVSWLFSLIVFGSIVNEGYLN-SASSGEEFCIYN 62 (233)
T ss_pred HHHHHHHHHHHhheeeeccccccC-cccCCceEEEEC
Confidence 444678999987654333220222 134456689775
No 76
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=20.04 E-value=3.8e+02 Score=19.95 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q psy15243 115 SAEVRIAKTAI 125 (150)
Q Consensus 115 ~~~~r~~~~l~ 125 (150)
+-+++..|.+.
T Consensus 239 ~lq~qL~~AL~ 249 (310)
T PF10319_consen 239 RLQRQLFKALI 249 (310)
T ss_pred HHHHHHHHHHH
Confidence 34444544443
Done!