RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15243
(150 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 153 bits (388), Expect = 9e-46
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
+MS+ +A +++I ++ + + WA+ P W + EG L +C+FDY++ + R +L M
Sbjct: 146 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 204
Query: 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
FI+ + P+ +I Y IV V +HEK + AK++N + LR Q ++AE+R+AK
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQA--GANAEMRLAKI 262
Query: 124 AITLCALFVASWTPYAVVALTGAFGDQ 150
+I + + F+ SW+PYAVVAL FG
Sbjct: 263 SIVIVSQFLLSWSPYAVVALLAQFGPL 289
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 128 bits (324), Expect = 5e-37
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI--RFYVL 61
R + A+M + + + A P + WSR++PEG SC DY TP E +V+
Sbjct: 148 RFGENHAIMGVAFTWVMALACAAPPLV-GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI 206
Query: 62 FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
+MF++ + IP+ +I Y Q+V V +E A AE +
Sbjct: 207 YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQ--------------KAEKEVT 252
Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
+ I + F+ W PYA VA
Sbjct: 253 RMVIIMVIAFLICWLPYAGVAFYIFTHQG 281
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 55.8 bits (135), Expect = 3e-10
Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 23/153 (15%)
Query: 4 RMSYSKALMILILI----YCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI--R 57
R+S + +++ +I P + S C ++ I +
Sbjct: 141 RLSATATKVVICVIWVLALLLAFPQGYY------STTETMPSRVVCMIEWPEHPNKIYEK 194
Query: 58 FYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAE 117
Y + + ++ Y +P+ +I Y+ + + + S + Q SA+
Sbjct: 195 VYHICVTVLIYFLPLLVIGYAYTVVGITL-----------WASEIPGDSSDRYHEQVSAK 243
Query: 118 VRIAKTAITLCALFVASWTPYAVVALTGAFGDQ 150
++ K I + F W P+ + L
Sbjct: 244 RKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 55.6 bits (134), Expect = 4e-10
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 22/148 (14%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIR-FYVLF 62
+ + + I L +P A+ E C + TP + + +
Sbjct: 239 SKAQAVNVAIWALASVVGVPVAIM------GSAQVEDEEIECLVEIPTPQDYWGPVFAIC 292
Query: 63 MFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAK 122
+F+ + +P+ +I YS ++ + L SG +E + RI +
Sbjct: 293 IFLFSFIVPVLVISVCYSLMIRRLRGV--------------RLLSGSREKDRN-LRRITR 337
Query: 123 TAITLCALFVASWTPYAVVALTGAFGDQ 150
+ + A+FV WTP V L G Q
Sbjct: 338 LVLVVVAVFVGCWTPVQVFVLAQGLGVQ 365
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 46.8 bits (111), Expect = 6e-07
Identities = 20/157 (12%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
++ +KA +I+++++ + P W R + + + + + Y +
Sbjct: 293 LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIAS 352
Query: 64 FIICYCIPMGMIINFYSQI-----------VGHVFSHEKALREQAKKMNVESLRSGQKEG 112
I+ + +P+ +++ YS++ Q ++ +
Sbjct: 353 SIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 412
Query: 113 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD 149
E + KT + F W P+ +V + D
Sbjct: 413 FCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD 449
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 40.1 bits (94), Expect = 1e-04
Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
M+ ++A +I+ ++ + P + W R L + R Y +
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIAS 181
Query: 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
II + IP+ ++I ++ + + +K+ + + + KT
Sbjct: 182 SIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREH--------KALKT 233
Query: 124 AITLCALFVASWTPYAVVALTGAFGD 149
+ +F W P+ +V + F
Sbjct: 234 LGIIMGVFTLCWLPFFLVNIVNVFNR 259
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 37.7 bits (87), Expect = 6e-04
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIR-FYVLF 62
R + + IL +P + CT + PT +
Sbjct: 131 RNAKIVNVCNWILSSAIGLPVMFM------ATTKYRQGSIDCTLTFSHPTWYWENLLKIC 184
Query: 63 MFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+FI + +P+ +I Y ++ + S +
Sbjct: 185 VFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGL 224
Score = 28.0 bits (62), Expect = 1.2
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 113 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD 149
+ RI + + + A+F+ WTP + + A
Sbjct: 374 KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALIT 410
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 31.9 bits (72), Expect = 0.049
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 77 NFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
Y + G+ F H++AL E + + A A
Sbjct: 121 VLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAA--AAAAAAAA 165
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 31.0 bits (70), Expect = 0.11
Identities = 10/115 (8%), Positives = 26/115 (22%), Gaps = 27/115 (23%)
Query: 34 SRFVPEGYLTSCTFDYLTPTESIR-FYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKA 92
+ C Y P + + ++ +P +I++ Y I+ +
Sbjct: 185 ANVSEADDRYICDRFY--PNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN 242
Query: 93 LREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF 147
+ E + + I Y + +
Sbjct: 243 IFEMLRI------------------DEGLRLKIYKD------TEGYYTIGIGHLL 273
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 31.2 bits (70), Expect = 0.12
Identities = 8/61 (13%), Positives = 18/61 (29%)
Query: 89 HEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG 148
+ + + + + E + KT + F W P+ +V +
Sbjct: 375 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 434
Query: 149 D 149
D
Sbjct: 435 D 435
Score = 30.8 bits (69), Expect = 0.17
Identities = 13/112 (11%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
++ +KA +I+++++ + P W R + + + + + Y +
Sbjct: 151 LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIAS 210
Query: 64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSS 115
I+ + +P+ +++ YS++ + + Q + + G +
Sbjct: 211 SIVSFYVPLVIMVFVYSRVF-------QEAKRQLNIFEMLRIDEGLRLKIYK 255
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 30.5 bits (68), Expect = 0.17
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 43 TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+C F+ + P + + V F F C +P+ +++ Y +I A R Q +
Sbjct: 179 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIF-------LAARRQLNIFEM 228
Query: 103 ESLRSGQKEGQSS 115
+ G +
Sbjct: 229 LRIDEGLRLKIYK 241
Score = 29.7 bits (66), Expect = 0.36
Identities = 10/61 (16%), Positives = 19/61 (31%)
Query: 87 FSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA 146
+ ++ R + + EV AK+ + LF W P ++
Sbjct: 360 WYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTF 419
Query: 147 F 147
F
Sbjct: 420 F 420
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 30.0 bits (67), Expect = 0.21
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 78 FYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTA 124
FY G+++ ++ L E + ++S + Q E R AK
Sbjct: 123 FYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQ--QEARRAKNT 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.22
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 71 PMGMIINF-----------YSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVR 119
P+ + I+F YS ++ K E+ K E S + +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE---KGL 1725
Query: 120 IAKTAITLCALFVASWTPYAVVAL 143
++ T T AL + A
Sbjct: 1726 LSATQFTQPALTLME---KAAFED 1746
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 29.3 bits (65), Expect = 0.35
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 77 NFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
+ Y ++ G++F +++ L E K E ++ +K E + AK+
Sbjct: 122 DMYLKVKGNMFKNKRVLMESIHKSKAE--KAREKTLSDQFEAKRAKS 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.39
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 50 LTPTESIRFYVLFMFIICYCIP--MGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRS 107
LTP E + ++ +P + I+ A + K +N + L +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 108 GQK---EGQSSAEVRIAKTAITLCALFVAS-WTPYAVVAL 143
+ AE R ++F S P +++L
Sbjct: 358 IIESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSL 394
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 29.2 bits (65), Expect = 0.42
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 78 FYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
Y ++ G+VF +++ L E K+ + R +K AE R +KT
Sbjct: 123 LYLKVKGNVFKNKRILMEHIHKLKADKAR--KKLLADQAEARRSKT 166
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 28.6 bits (64), Expect = 0.71
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 9/36 (25%)
Query: 95 EQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCAL 130
+ + LR E+ + ++A L AL
Sbjct: 278 ALCIALGSDGLR---------GELTLLRSARALAAL 304
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 28.9 bits (64), Expect = 0.73
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 10 ALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYC 69
+ IL + + + + W+ F+ + + + ++ + II +
Sbjct: 126 SATILG---AWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDV-TWFKVMTAIINFY 181
Query: 70 IPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
+P +++ FY++I V H + EG + + T
Sbjct: 182 LPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 235
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 85 HVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALT 144
+ + + + + + E + AK + A F+ W PY + +
Sbjct: 336 KSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMV 395
Query: 145 GAF 147
AF
Sbjct: 396 IAF 398
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 28.5 bits (63), Expect = 0.85
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 43 TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
+C F+ + P + + V F F C +P+ +++ Y +I A R Q +
Sbjct: 189 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIF-------LAARRQLADLED 238
Query: 103 ESLRSGQKEGQSSAEVRIAKT 123
A+
Sbjct: 239 NWETLNDNLKVIEKADNAAQV 259
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 90 EKALREQAKKMNVE--SLRSGQKEGQSSAEVRIAKTAITLCALFVAS 134
E+ RE+AKK E +S Q E ++ RIA A F
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVE-KNKINNRIADKA------FYQQ 148
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex;
1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A
3lg7_A*
Length = 127
Score = 27.7 bits (61), Expect = 1.1
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 80 SQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAI-TLCALFVASWTPY 138
+++ + +R + K + +S+ + +SSA++RI KT TL FV + Y
Sbjct: 53 EELMSDIKKTANKVRSKLKSIE-QSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEY 111
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription
regulation, TETR, DNA-binding transcription; 2.90A
{Pseudomonas aeruginosa}
Length = 210
Score = 26.7 bits (59), Expect = 2.8
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALF 131
+ + L +Q ++ + +R + G+ A + + +I L +L+
Sbjct: 122 LLRRRELLEKQGQRFGLRQIRRAVERGELPARLDVELASIYLQSLW 167
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 26.6 bits (58), Expect = 3.3
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 57 RFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQ 109
+V++ ++ + +P G+ + Y++I L+++ +K E LR +
Sbjct: 195 PDFVIYSSVVSFYLPFGVTVLVYARIY-------VVLKQRRRKNIFEMLRIDE 240
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 26.8 bits (58), Expect = 3.7
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 87 FSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA 146
+ ++ R + + +SS V + KT I + ++F+A W P ++ L
Sbjct: 386 WYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDV 445
Query: 147 F 147
Sbjct: 446 G 446
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 26.2 bits (57), Expect = 4.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 78 FYSQIVGHVFSHEKALREQAKKM 100
FY G+++ ++ L E
Sbjct: 123 FYLGSKGNLYKNKTVLIEAIHVS 145
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 26.2 bits (57), Expect = 4.6
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 57 RFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSS 115
I + +P+ ++ Y I +A + + + + G +
Sbjct: 184 AAVTFGTAIAAFYLPVIIMTVLYWHIS-------RASKSRINIFEMLRIDEGLRLKIYK 235
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P*
1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P*
1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P*
1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 25.6 bits (56), Expect = 5.6
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 77 NFYSQIVGHVFSHEKALREQAKKMNVES 104
+ Y + G F L + ++
Sbjct: 122 DLYDKAGGGEFDSVADLERYIDANHGDA 149
>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino
kinase, neurodegenerative disorders, transferase; 1.41A
{Gallus gallus} SCOP: a.83.1.1 d.128.1.2 PDB: 3b6r_A*
3drb_A* 3dre_A 1g0w_A 1i0e_A 1u6r_A* 1vrp_A* 2crk_A
Length = 380
Score = 26.0 bits (56), Expect = 5.8
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 27 FPYLEKWSRFVP--EGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVG 84
P L K +F + T ++ ++ V
Sbjct: 298 LPNLGKHEKFGEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVK 357
Query: 85 HVFSHEKALREQAKKMNVESLRSGQK 110
+ EK L K +++ L QK
Sbjct: 358 LLIEMEKRLE---KGQSIDDLMPAQK 380
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 25.7 bits (57), Expect = 7.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 24 WAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFI 65
+ + Y + P+ +L S +D + E + FY F F
Sbjct: 158 FIIDGYEKFVDNPTPKTFLESIVYDVIL--EGLNFYSGFAFF 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.439
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,328,688
Number of extensions: 125072
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 38
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)