RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15243
         (150 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 17  IYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTP--TESIRFYVLFMFIICYCIPMGM 74
               +      P L  WSR++PEG   SC  DY TP    +   +V++MF++ + IP+ +
Sbjct: 159 FTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIV 218

Query: 75  IINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVAS 134
           I   Y Q+V  V                   +  +      AE  + +  I +   F+  
Sbjct: 219 IFFCYGQLVFTVKEAAA--------------QQQESATTQKAEKEVTRMVIIMVIAFLIC 264

Query: 135 WTPYAVVALTGAFGD 149
           W PYA VA       
Sbjct: 265 WLPYAGVAFYIFTHQ 279


>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 23.8 bits (50), Expect = 6.9
 Identities = 6/49 (12%), Positives = 11/49 (22%)

Query: 12 MILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
               +       +     E+      +        + LTP     F V
Sbjct: 31 YFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQV 79


>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein
           13 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 197

 Score = 24.2 bits (52), Expect = 7.4
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 23/109 (21%)

Query: 15  ILIYCYVIPWAMFP----YLEKWSRFVPEGYL----TSCTFDYLTPTESIRFYVLF---- 62
           I  Y               L  W   +P+G       S   +       +R  V+     
Sbjct: 89  IYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYL 148

Query: 63  ----------MFIICYCIPMGMIINFYSQIVGHVFSHE-KALREQAKKM 100
                     +  IC     G    +YS+  GH+ + E   +R   + +
Sbjct: 149 IEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVARIRNSFQPL 197


>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 111

 Score = 23.7 bits (50), Expect = 8.0
 Identities = 7/46 (15%), Positives = 11/46 (23%)

Query: 15 ILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
          I  Y       +   +  W      G   +     LT      F +
Sbjct: 44 ITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,715
Number of extensions: 24293
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.1 bits)