BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15244
(1427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1120 (40%), Positives = 646/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 302
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 303 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 362
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 363 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 422
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 423 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 480
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 481 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 511
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 512 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 561
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 562 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 587
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 588 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 647
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 648 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 704
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 705 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 763
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 764 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 816
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 817 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 851
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 852 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 911
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 912 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 970
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 971 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1010
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 328/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 527 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 586
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 587 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 646
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 647 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 703
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 704 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 762
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 763 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 795
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 796 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 850
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 851 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 910
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 911 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 953
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 954 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 983
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 984 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1042
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1043 TIYYAMNG 1050
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 995 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1053
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1054 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1113
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1114 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1120 (40%), Positives = 646/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 325
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 326 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 385
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 386 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 445
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 446 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 503
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 504 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 534
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 535 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 584
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 585 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 610
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 611 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 670
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 671 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 727
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 728 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 786
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 787 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 839
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 840 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 874
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 875 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 934
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 935 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 993
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 994 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1033
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 328/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 550 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 609
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 610 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 669
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 670 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 726
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 727 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 785
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 786 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 818
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 819 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 873
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 874 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 933
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 934 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 976
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 977 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 1006
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 1007 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1065
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1066 TIYYAMNG 1073
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 1018 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1076
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1077 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1136
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1137 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1169
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1120 (40%), Positives = 646/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 325
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 326 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 385
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 386 IIAYRSSGGAGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 445
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 446 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 503
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 504 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 534
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 535 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 584
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 585 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 610
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 611 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 670
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 671 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 727
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 728 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 786
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 787 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 839
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 840 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 874
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 875 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 934
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 935 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 993
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 994 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1033
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 328/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 550 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 609
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 610 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 669
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 670 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 726
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 727 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 785
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 786 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 818
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 819 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 873
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 874 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 933
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 934 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 976
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 977 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 1006
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 1007 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1065
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1066 TIYYAMNG 1073
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 1018 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1076
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1077 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1136
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1137 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1169
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1120 (40%), Positives = 645/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 302
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 303 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 362
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 363 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 422
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 423 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 480
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 481 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 511
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 512 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 561
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGG
Sbjct: 562 SK----------------------------------TADVFKDGFSLEMWGGTTFDVAYN 587
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 588 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 647
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 648 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 704
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 705 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 763
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 764 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 816
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 817 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 851
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 852 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 911
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 912 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 970
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 971 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1010
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/608 (37%), Positives = 327/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGG
Sbjct: 527 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGTTFDVAY 586
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 587 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 646
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 647 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 703
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 704 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 762
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 763 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 795
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 796 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 850
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 851 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 910
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 911 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 953
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 954 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 983
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 984 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1042
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1043 TIYYAMNG 1050
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 995 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1053
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1054 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1113
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1114 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1120 (40%), Positives = 646/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 325
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 326 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 385
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + E+M R+L E ++
Sbjct: 386 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEEMVRSLREMRIR 445
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 446 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 503
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 504 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 534
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 535 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 584
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 585 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 610
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 611 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 670
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 671 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 727
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 728 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 786
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 787 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 839
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 840 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 874
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 875 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 934
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 935 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 993
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 994 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1033
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 328/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 550 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 609
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 610 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 669
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 670 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 726
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 727 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 785
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 786 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 818
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 819 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 873
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 874 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 933
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 934 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 976
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 977 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 1006
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 1007 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1065
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1066 TIYYAMNG 1073
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 1018 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1076
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1077 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1136
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1137 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1169
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1120 (40%), Positives = 645/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 302
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 303 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 362
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 363 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 422
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 423 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 480
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 481 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 511
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 512 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 561
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 562 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 587
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 588 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 647
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 648 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 704
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 705 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 763
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 764 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 816
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 817 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 851
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K PSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 852 GERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 911
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 912 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 970
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 971 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1010
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/608 (37%), Positives = 327/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 527 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 586
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 587 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 646
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 647 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 703
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 704 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 762
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 763 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 795
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 796 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 850
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K PSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 851 LGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 910
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 911 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 953
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 954 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 983
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 984 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1042
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1043 TIYYAMNG 1050
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 995 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1053
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1054 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1113
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1114 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1120 (40%), Positives = 645/1120 (57%), Gaps = 130/1120 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+L+ANR E+AIR+ A E+ I +V IYS +DK S HR K D+++LVG + P +Y
Sbjct: 27 IKKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV AR
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KAD+P+IPGT P+ + KEF +E FP+++KA V + +E+
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV++
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D+ F+FIEVNPR+QVEHT++
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE-FFFIEVNPRVQVEHTIT 325
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E +TGID+V++QI +A G L E+ + Q+K IT G AIQC + TEDP +F P TG
Sbjct: 326 EMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGT 385
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E ++
Sbjct: 386 IIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIR 445
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +NG
Sbjct: 446 GVKTNIPFLINVMKNKKFTSGD-YTTKFIEETPELFDIQP-SLDRGTKTLEYIGNVTING 503
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+ NV+ R +E + VS SKI + +G
Sbjct: 504 -----FPNVE--------KRPKPDYELASIPTVSS----SKIAS------------FSGT 534
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
++LL +G V+K VLLTDTTFRDAHQSLLATRVRT D+ +N
Sbjct: 535 KQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDM----------INIA 584
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
K A+ F + +SLEMWGGA
Sbjct: 585 SK----------------------------------TADVFKDGFSLEMWGGATFDVAYN 610
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+F
Sbjct: 611 FLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIF 670
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVES 832
D LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 671 DSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 727
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG DI
Sbjct: 728 GFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDI 786
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+D A SMSG+ SQP+ ++ L + D+ + S YW VR Y+
Sbjct: 787 IDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS------- 839
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
D+ S D+K+ ++E Y +E+PGGQY+NL + S GL
Sbjct: 840 ----------DFES---------------DIKSPNTEIYQHEMPGGQYSNLSQQAKSLGL 874
Query: 1013 D--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+S
Sbjct: 875 GERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPES 934
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYRE---------- 1119
V FF+G IG+P GF K LQ +L ++ R E+ +P+ RE
Sbjct: 935 VVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPVDFEKVRELLEEEQQGPV 993
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHAL 1159
E ++ +++PK +++++ R+++G + L T FF +
Sbjct: 994 TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGM 1033
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 328/608 (53%), Gaps = 88/608 (14%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V+K +LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 550 VKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAY 609
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR+
Sbjct: 610 NFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRI 669
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVE 831
FD LN V + +AVQ+ I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 670 FDSLNWVDQMKVANEAVQE---AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER 726
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG D
Sbjct: 727 EGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVD 785
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
I+D A SMSG+ SQP+ ++ L + + R +R
Sbjct: 786 IIDTAVASMSGLTSQPSANSLYYAL-----------------NGFPRHLR---------- 818
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
D+ + S YW VR Y+ FE +D+K+ ++E Y +E+PGGQY+NL + S G
Sbjct: 819 ----TDIEGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKSLG 873
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L F++VK YR NFL GDI+K TPSSKVV D+A++M Q L + V+ + K+ FP+
Sbjct: 874 LGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPE 933
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEF-DPIMACDYREDEPFKMNKL 1128
SV FF+G IG+P GF K LQ +L ++ R E+ +P+
Sbjct: 934 SVVSFFKGEIGQPVNGFNKDLQAVILKG-QEALTARPGEYLEPV---------------- 976
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPK 1188
F K R+ L + + P+ D ++ +++PK
Sbjct: 977 -------DFEKVRE----------------LLEEEQQGPVTEQDI-------ISYVLYPK 1006
Query: 1189 ATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1248
+++++ R+++G + L T F G GE E G + +ISE +++G R
Sbjct: 1007 VYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNR 1065
Query: 1249 TVFFLYNG 1256
T+++ NG
Sbjct: 1066 TIYYAMNG 1073
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQ-- 1334
+ L L F G GE E G + +ISE +++G RT+++ NGQ
Sbjct: 1018 YGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQAR 1076
Query: 1335 -LXXXXXXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
+ IGA MPG++ E N L++ MK
Sbjct: 1077 RIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1136
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET I A DGV+K++ V G +A DL++ ++
Sbjct: 1137 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1169
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/1131 (38%), Positives = 630/1131 (55%), Gaps = 133/1131 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG------M 110
+ KIL+ANRSE+AIRV RA NE+GIK+V I++E+DK + HR K D+++ VG+G +
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 111 PPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG 170
P+ +YL+I E+I +AK + DAIHPGYG LSE +F A AG+ FIGP + ++ LG
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANK 230
+KV AR+ A+ VP++P T D+ +V + + +PV+LKA++ + ++
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
+ + A+ EA+A+FGKD++ +EK ++R RH+E QILGD +G+VVHL+ERDCS+QRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN-FYFIEVNPRL 349
QKV++ APA +S + R + S+++A + Y AGTVE+L+D D FYFIEVNPR+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLT--ELGL-CQEKITPQGCAIQCHLRTEDPKRN 406
QVEHT++E +TGID+V++QI I G ++ + G+ QE I G A+QC + TEDP+ N
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 407 FQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRA 466
F P GR+ + + GIR+D Y G I+ YD LL K+ + +M RA
Sbjct: 374 FIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRA 433
Query: 467 LEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFI 526
L E ++ GV TNL FL + KF + T FID P+L ++ Q R K+L ++
Sbjct: 434 LREFRIRGVATNLTFLEAIIGHPKFRD-NSYTTRFIDTTPELFQQVKRQD-RATKLLTYL 491
Query: 527 GETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIK 586
+ VNG P E + V N +K
Sbjct: 492 ADVTVNG--------------HPEAKDRPKPLENAARPVVPYANGNG-----------VK 526
Query: 587 KPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGA 646
+G ++LL +G +F +R K VLLTDTT RD HQSLLATR+RTYD+ ++ A
Sbjct: 527 ----DGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARI---A 579
Query: 647 GEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA 706
G + ++ NL SLE WGGA
Sbjct: 580 GTYSHA-----------------------------------------LPNLLSLECWGGA 598
Query: 707 VSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG 766
++FL E PWERLA +RE PN+ QM+LRG + VGY+NY V F R A++ G
Sbjct: 599 TFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGG 658
Query: 767 IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLA 826
ID+FRVFD LN V N+ MDA+ + + + EA ICY GD+ N + KY L YY +LA
Sbjct: 659 IDLFRVFDCLNWVENMRVSMDAIAEE---NKLCEAAICYTGDILNSARPKYDLKYYTNLA 715
Query: 827 KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886
+L ++GA ++ + DMAGLLKP AAK+L + RE + IH HTHD +G AT LA V
Sbjct: 716 VELEKAGAHIIAVXDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAV 774
Query: 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
+AG D VD A D++SG SQP +G+IV L +++ G+D + S YW
Sbjct: 775 EAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYW--------- 825
Query: 947 AHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFR 1006
VR YA FE +DLK +SE YL+E+PGGQ+TNLK +
Sbjct: 826 ----------------------EAVRNQYAAFE-SDLKGPASEVYLHEMPGGQFTNLKEQ 862
Query: 1007 TMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADK 1064
S GL+ + V +AY AN + GDI+K TPSSKVV D+A+ M + L+ DV+ +
Sbjct: 863 ARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDRE 922
Query: 1065 IIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH-----ALERKAEFDP----IMAC 1115
+ FP+SV +G +G+P G+P+ LQ+K L K + +L ++A+ D I
Sbjct: 923 VSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKK 982
Query: 1116 DYREDEPFKM-NKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEF 1165
RE F+ + L++PK F D +GPV LPT +F+ L E
Sbjct: 983 LEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEEL 1033
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 5/155 (3%)
Query: 1274 SDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1333
SD + + + + G GEE + + G T + ++S + G TVFF NG
Sbjct: 1009 SDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNG 1067
Query: 1334 QLXXXX----XXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMS 1389
Q A +GAPMPG I DVL+ +
Sbjct: 1068 QPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127
Query: 1390 VMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVV 1424
MK ET IHA DG + E+ V+ G Q+ DL+ V
Sbjct: 1128 AMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAV 1162
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/1131 (38%), Positives = 629/1131 (55%), Gaps = 133/1131 (11%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG------M 110
+ KIL+ANRSE+AIRV RA NE+GIK+V I++E+DK + HR K D+++ VG+G +
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 111 PPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG 170
P+ +YL+I E+I +AK + DAIHPGYG LSE +F A AG+ FIGP + ++ LG
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANK 230
+KV AR+ A+ VP++P T D+ +V + + +PV+LKA++ + ++
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
+ + A+ EA+A+FGKD++ +EK ++R RH+E QILGD +G+VVHL+ERDCS+QRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN-FYFIEVNPRL 349
QKV++ APA +S + R + S+++A + Y AGTVE+L+D D FYFIEVNPR+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 350 QVEHTLSEEITGIDVVQSQIKIAQGKSL--TELGL-CQEKITPQGCAIQCHLRTEDPKRN 406
QVEHT++E +TGID+V++QI I G ++ + G+ QE I G A+QC + TEDP+ N
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 407 FQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRA 466
F P GR+ + + GIR+D Y G I+ YD LL K+ + +M RA
Sbjct: 374 FIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRA 433
Query: 467 LEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFI 526
L E ++ GV TNL FL + KF + T FID P+L ++ Q R K+L ++
Sbjct: 434 LREFRIRGVATNLTFLEAIIGHPKFRD-NSYTTRFIDTTPELFQQVKRQD-RATKLLTYL 491
Query: 527 GETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIK 586
+ VNG P E + V N +K
Sbjct: 492 ADVTVNG--------------HPEAKDRPKPLENAARPVVPYANGNG-----------VK 526
Query: 587 KPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGA 646
+G ++LL +G +F +R K VLLTDTT RD HQSLLATR+RTYD+ ++ A
Sbjct: 527 ----DGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARI---A 579
Query: 647 GEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA 706
G + ++ NL SLE WGGA
Sbjct: 580 GTYSHA-----------------------------------------LPNLLSLECWGGA 598
Query: 707 VSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG 766
++FL E PWERLA +RE PN+ QM+LRG + VGY+NY V F R A++ G
Sbjct: 599 TFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGG 658
Query: 767 IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLA 826
ID+FRVFD LN V N+ MDA+ + + + EA ICY GD+ N + KY L YY +LA
Sbjct: 659 IDLFRVFDCLNWVENMRVSMDAIAEE---NKLCEAAICYTGDILNSARPKYDLKYYTNLA 715
Query: 827 KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886
+L ++GA ++ + DMAGLLKP AAK+L + RE + IH HTHD +G AT LA V
Sbjct: 716 VELEKAGAHIIAVXDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAV 774
Query: 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
+AG D VD A D++SG SQP +G+IV L +++ G+D + S YW
Sbjct: 775 EAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYW--------- 825
Query: 947 AHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFR 1006
VR YA FE +DLK +SE YL+E+PGGQ+TNLK +
Sbjct: 826 ----------------------EAVRNQYAAFE-SDLKGPASEVYLHEMPGGQFTNLKEQ 862
Query: 1007 TMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADK 1064
S GL+ + V +AY AN + GDI+K PSSKVV D+A+ M + L+ DV+ +
Sbjct: 863 ARSLGLETRWHQVAQAYADANQMFGDIVKVAPSSKVVGDMALMMVSQDLTVADVVSPDRE 922
Query: 1065 IIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH-----ALERKAEFDP----IMAC 1115
+ FP+SV +G +G+P G+P+ LQ+K L K + +L ++A+ D I
Sbjct: 923 VSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKK 982
Query: 1116 DYREDEPFKM-NKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEF 1165
RE F+ + L++PK F D +GPV LPT +F+ L E
Sbjct: 983 LEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEEL 1033
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 5/155 (3%)
Query: 1274 SDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1333
SD + + + + G GEE + + G T + ++S + G TVFF NG
Sbjct: 1009 SDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNG 1067
Query: 1334 QLXXXX----XXXXXXXXXXXXXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMS 1389
Q A +GAPMPG I DVL+ +
Sbjct: 1068 QPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127
Query: 1390 VMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVV 1424
MK ET IHA DG + E+ V+ G Q+ DL+ V
Sbjct: 1128 AMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAV 1162
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/619 (44%), Positives = 364/619 (58%), Gaps = 92/619 (14%)
Query: 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG 704
G F +VR +LL DTTFRDAHQSLLATRVRT+DLKK++P+VA+ F+ L+S+E WG
Sbjct: 89 GPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWG 148
Query: 705 GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764
GA ++FL ECPW RL ELRELIPNIPFQM+LRG + VGY+NY V FC +A +
Sbjct: 149 GATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKE 208
Query: 765 AGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824
G+D+FRVFD LN +PN++ GM+A G +VEA I Y GD+ +P++ KYSL YY
Sbjct: 209 NGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTGDVADPSRTKYSLQYYMG 265
Query: 825 LAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884
LA++LV +G +LC+ DMAGLLKPTA +L+ S R+++P++ +H+HTHD +G GVA LA
Sbjct: 266 LAEELVRAGTHILCIXDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLA 325
Query: 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELY 944
C +AGAD+VDVAADSMSG+ SQP+MG +V+C T +D
Sbjct: 326 CAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTP----LDTE---------------- 365
Query: 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYEIPGGQYTNL 1003
+ + V DYS YW R LYA F+CT +K+ +S+ Y EIPGGQYTNL
Sbjct: 366 -----------VPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNL 414
Query: 1004 KFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMEN 1061
F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q LS +
Sbjct: 415 HFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQ 474
Query: 1062 ADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDE 1121
A+++ FP+SV EF QG IG P+ GFP+ + KVL L
Sbjct: 475 AEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLP---------------------- 512
Query: 1122 PFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVK- 1180
R E P LP + ALE++ D R E V
Sbjct: 513 -------------------RVEGRPGASLPP-LDLQALEKEL-------VD-RHGEEVTP 544
Query: 1181 ---MNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLS 1237
++ ++P F F FGP+D L TR+FL GP I EEF E + G T ++ L+
Sbjct: 545 EDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALA 604
Query: 1238 ISEHLNDHGERTVFFLYNG 1256
+S+ LN G+R VFF NG
Sbjct: 605 VSD-LNRAGQRQVFFELNG 622
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 274/680 (40%), Positives = 367/680 (53%), Gaps = 122/680 (17%)
Query: 500 NFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFE 559
+ +D+NP+L + Q R K+L ++G +VNGP TP+ V P DPV+
Sbjct: 19 SHMDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVP---- 73
Query: 560 TSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTD 619
I P A G+R +L G F VR +LL D
Sbjct: 74 -------------------------IGPPPA-GFRDILLREGPEGFARAVRNHPGLLLMD 107
Query: 620 TTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVR 679
TTFRDAHQSLLATRVRT+DLK
Sbjct: 108 TTFRDAHQSLLATRVRTHDLK--------------------------------------- 128
Query: 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMIL 739
K++P+VA+ F+ L+S+E WGGA ++FL ECPW RL ELRELIPNIPFQM+L
Sbjct: 129 -----KIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLL 183
Query: 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799
RG + VGY+NY V FC +A + G+D+FRVFD LN +PN++ GM+A G +V
Sbjct: 184 RGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VV 240
Query: 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFR 859
EA I Y GD+ +P++ KYSL YY LA++LV +G +LC+ DMAGLLKPTA +L+ S R
Sbjct: 241 EAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIXDMAGLLKPTACTMLVSSLR 300
Query: 860 EKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT 919
+++P++ +H+HTHD +G GVA LAC +AGAD+VDVAADSMSG+ SQP+MG +V+C T
Sbjct: 301 DRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGT 360
Query: 920 DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFE 979
+ + V DYS YW R LYA F+
Sbjct: 361 PLDTEVPMERVFDYSEYW-------------------------------EGARGLYAAFD 389
Query: 980 CT-DLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTP 1036
CT +K+ +S+ Y EIPGGQYTNL F+ S GL F++VK+AY AN +LGD+IK TP
Sbjct: 390 CTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTP 449
Query: 1037 SSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLD 1096
SSK+V DLA FM Q LS + A+++ FP+SV EF QG IG P+ GFP+ + KVL
Sbjct: 450 SSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLK 509
Query: 1097 SLKDHALERKAEFDPI-------MACDYREDEPFK---MNKLIFPKATKKFMKFRDEFGP 1146
L A P+ D +E ++ ++P F F FGP
Sbjct: 510 DLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGP 569
Query: 1147 VDKLPTRIFFHALERKAEFD 1166
+D L TR+F + EF+
Sbjct: 570 LDSLNTRLFLQGPKIAEEFE 589
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLX 1336
F L + R+FL GP I EEF E + G T ++ L++S+ LN G+R VFF NGQL
Sbjct: 567 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLR 625
Query: 1337 XXXXXXXXXXXXXX---XXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
G+IGAPMPG +I+ L V+S MK
Sbjct: 626 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 685
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET++ + +G V+++ V + +DL++ ++
Sbjct: 686 ETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing The
Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/619 (44%), Positives = 364/619 (58%), Gaps = 92/619 (14%)
Query: 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG 704
G F +VR +LL DTTFRDAHQSLLATRVRT+DLKK++P+VA+ F+ L+S+E WG
Sbjct: 89 GPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWG 148
Query: 705 GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764
GA ++FL ECPW RL ELRELIPNIPFQM+LRG + VGY+NY V FC +A +
Sbjct: 149 GATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKE 208
Query: 765 AGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824
G+D+FRVFD LN +PN++ GM+A G +VEA I Y GD+ +P++ KYSL YY
Sbjct: 209 NGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTGDVADPSRTKYSLQYYMG 265
Query: 825 LAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884
LA++LV +G +LC+KDMAGLLKPTA +L+ S R+++P++ +H+HTHD +G GVA LA
Sbjct: 266 LAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLA 325
Query: 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELY 944
C +AGAD+VDVAADSMSG+ SQP+MG +V+C T +D
Sbjct: 326 CAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTP----LDTE---------------- 365
Query: 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYEIPGGQYTNL 1003
+ + V DYS YW R LYA F+CT +K+ +S+ Y EIPGGQYTNL
Sbjct: 366 -----------VPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNL 414
Query: 1004 KFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMEN 1061
F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q LS +
Sbjct: 415 HFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQ 474
Query: 1062 ADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDE 1121
A+++ FP+SV EF QG IG P+ GFP+ + KVL L
Sbjct: 475 AEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLP---------------------- 512
Query: 1122 PFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVK- 1180
R E P LP + ALE++ D R E V
Sbjct: 513 -------------------RVEGRPGASLPP-LDLQALEKEL-------VD-RHGEEVTP 544
Query: 1181 ---MNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLS 1237
++ ++P F F FGP+D L TR+FL GP I EEF E + G T ++ L+
Sbjct: 545 EDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALA 604
Query: 1238 ISEHLNDHGERTVFFLYNG 1256
+S+ LN G+R V F NG
Sbjct: 605 VSD-LNRAGQRQVAFELNG 622
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/680 (40%), Positives = 368/680 (54%), Gaps = 122/680 (17%)
Query: 500 NFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFE 559
+ +D+NP+L + Q R K+L ++G +VNGP TP+ V P DPV+
Sbjct: 19 SHMDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVP---- 73
Query: 560 TSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTD 619
I P A G+R +L G F VR +LL D
Sbjct: 74 -------------------------IGPPPA-GFRDILLREGPEGFARAVRNHPGLLLMD 107
Query: 620 TTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVR 679
TTFRDAHQSLLATRVRT+DLK
Sbjct: 108 TTFRDAHQSLLATRVRTHDLK--------------------------------------- 128
Query: 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMIL 739
K++P+VA+ F+ L+S+E WGGA ++FL ECPW RL ELRELIPNIPFQM+L
Sbjct: 129 -----KIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLL 183
Query: 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799
RG + VGY+NY V FC +A + G+D+FRVFD LN +PN++ GM+A G +V
Sbjct: 184 RGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VV 240
Query: 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFR 859
EA I Y GD+ +P++ KYSL YY LA++LV +G +LC+KDMAGLLKPTA +L+ S R
Sbjct: 241 EAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLR 300
Query: 860 EKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT 919
+++P++ +H+HTHD +G GVA LAC +AGAD+VDVAADSMSG+ SQP+MG +V+C T
Sbjct: 301 DRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGT 360
Query: 920 DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFE 979
+ + V DYS YW R LYA F+
Sbjct: 361 PLDTEVPMERVFDYSEYW-------------------------------EGARGLYAAFD 389
Query: 980 CT-DLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTP 1036
CT +K+ +S+ Y EIPGGQYTNL F+ S GL F++VK+AY AN +LGD+IK TP
Sbjct: 390 CTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTP 449
Query: 1037 SSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLD 1096
SSK+V DLA FM Q LS + A+++ FP+SV EF QG IG P+ GFP+ + KVL
Sbjct: 450 SSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLK 509
Query: 1097 SLKDHALERKAEFDPI-------MACDYREDEPFK---MNKLIFPKATKKFMKFRDEFGP 1146
L A P+ D +E ++ ++P F F FGP
Sbjct: 510 DLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGP 569
Query: 1147 VDKLPTRIFFHALERKAEFD 1166
+D L TR+F + EF+
Sbjct: 570 LDSLNTRLFLQGPKIAEEFE 589
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 1277 FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLX 1336
F L + R+FL GP I EEF E + G T ++ L++S+ LN G+R V F NGQL
Sbjct: 567 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVAFELNGQLR 625
Query: 1337 XXXXXXXXXXXXXX---XXXXXTAGEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKT 1393
G+IGAPMPG +I+ L V+S MK
Sbjct: 626 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 685
Query: 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
ET++ + +G V+++ V + +DL++ ++
Sbjct: 686 ETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/456 (51%), Positives = 314/456 (68%), Gaps = 5/456 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ K+L+ANR E+AIRV RAC E+GI++V IYS++D S HR K D+A+LVG+G P+ AY
Sbjct: 6 IRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAY 65
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+I II IAK ++VDAIHPGYGFLSE FAK G+ FIGP N L GDKV AR
Sbjct: 66 LDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKAR 125
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
AA+ A +P+IPG+ PV ++ V F + +P+I+KAA V +K ++E
Sbjct: 126 HAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEA 185
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA+SEA A+FG D++ VEK I+ P+HIEVQILGD G++VHLYERDCS+QRR+QKV++
Sbjct: 186 FERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVE 245
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+AP+ +S +R I E +V+L +S+GY NAGTVEFL+ D+ FYFIEVNPR+QVEHT++
Sbjct: 246 VAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGDE-FYFIEVNPRIQVEHTIT 304
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGLC-QEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
E ITGID+VQSQI IA G SL E+G+ QE I G AIQ + TEDP NF P TG+
Sbjct: 305 EMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGK 364
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + G+R+D+ + G I+P YDSLL K+ T++ + KM R L E ++
Sbjct: 365 IMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIR 424
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLL 509
G+ TN+PFL NV KFLSGE +T+FID P+L
Sbjct: 425 GIKTNIPFLENVVQHPKFLSGE-YDTSFIDTTPELF 459
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/452 (41%), Positives = 298/452 (65%), Gaps = 7/452 (1%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
K+L+ANR E+A+R+ RAC E+GI +V IY+E + + H D+A+++G P+ YLN
Sbjct: 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIG--TDPLDTYLN 61
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA 178
II +A DAIHPGYGFL+E +FAK AG+ FIGP V++ +GDK +++
Sbjct: 62 KQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEV 121
Query: 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFK 238
KA VP++PG+ + +++ K E+ +PV+LKA N++ + +N++
Sbjct: 122 MKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYE 181
Query: 239 RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIA 298
+A EA +FG+ D+L+EK+I+ P+HIE Q+LGDK+G+V+HL ERDCS+QRR QK+++IA
Sbjct: 182 QASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIA 241
Query: 299 PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEE 358
P+ ++ R+ + AK +GY NAGT+EF+ D++ N YFIE+N R+QVEH +SE
Sbjct: 242 PSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEM 301
Query: 359 ITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFT 418
+TGID+V+ QIKIA G+ LT + QE + G AI+C + EDPK+NF PST ++ +
Sbjct: 302 VTGIDIVKWQIKIAAGEPLT---IKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYY 358
Query: 419 DPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTN 478
P GIRV+ + G +++P YDS++AK+I T+ + E+MR ALE +++GV T
Sbjct: 359 VPGGFGIRVEHAAAR-GFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTT 417
Query: 479 LPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
+P L+N+ +K F +G+ T +++++P++ E
Sbjct: 418 IPLLINIMKEKDFKAGK-FTTKYLEEHPEVFE 448
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/450 (40%), Positives = 285/450 (63%), Gaps = 7/450 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
M+K+LIANR E+A+R+ RAC ++GI++V IYSE DK + H D+A+ VG + +Y
Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSK-DSY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP I+ IA + D +HPGYGFL+E DFA+ L+FIGP+ ++ +G K +A+
Sbjct: 60 LNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
+KA+VP++PG+ + DV + K+ ++ +PVI+KA ++ +E
Sbjct: 120 AEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETG 179
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ + EA +FG + +EK+I+ RHIE+QI+GD YG+V+HL ERDC++QRR QK+++
Sbjct: 180 FRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVE 239
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN-FYFIEVNPRLQVEHTL 355
AP+ + R + +VR AK++ Y NAGT+EF+ D +DN FYF+E+N R+QVEH +
Sbjct: 240 EAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E +TGID+V+ Q+++A G L QE I G AI+ + E+P +NF PS G+++
Sbjct: 300 TEMVTGIDLVKLQLQVAMGDVLP---YKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIE 356
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
+ P G+R++S+C Y I P YDS++AK+I+H T + RAL E V G+
Sbjct: 357 QYLAPGGYGVRIESAC-YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGI 415
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDN 505
T +PF + + ++ F SG+ TNF++ N
Sbjct: 416 DTTIPFHIKLLNNDIFRSGK-FNTNFLEQN 444
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 343 bits (880), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/439 (40%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+EK+LIANR E+A+R+ RAC E+GIK+V ++S D+ H + D++ +G P +Y
Sbjct: 2 LEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPA-PATQSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L IP II A+ AIHPGYGFL+E DFA+ + +G F+GP V++ +GDKV A+
Sbjct: 61 LQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAK 120
Query: 177 DAALKADVPIIPGTTEPV-TDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
DA +A VP +PG+ P+ D + EV +PVI+KAA V ++ + +
Sbjct: 121 DAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIK 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ K ++EA A+FG + +EK++ PRH+EVQ+L D G+ +HL +RDCS+QRR+QKVI
Sbjct: 181 SAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVI 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA + R + V+ +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 241 EEAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLYE-NGRFYFIEMNTRVQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
SE +TG+D+V+ ++IA G+ L+ + QE + +G A++C + EDPK F PS G++
Sbjct: 300 SEMVTGVDIVKEMLRIASGEKLS---IRQEDVVIRGHALECRINAEDPK-TFMPSPGKVK 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+RVDS Y G + P+YDSL+ K+I + A + +MR AL+E V G+
Sbjct: 356 HFHAPGGNGVRVDSHL-YSGYSVPPNYDSLVGKVITYGADRDEALARMRNALDELIVDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN ++ D F G
Sbjct: 415 KTNTELHKDLVRDAAFCKG 433
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 342 bits (876), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 194/494 (39%), Positives = 292/494 (59%), Gaps = 14/494 (2%)
Query: 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAA 115
+++++L+ANR E+A RV R+ +GI SV ++S+ D+ + H + D A +G G P +
Sbjct: 7 SIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLG-GAKPADS 65
Query: 116 YLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLA 175
YL II A + AIHPGYGFLSE DFA+A AGL F+GP + +G K A
Sbjct: 66 YLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAA 125
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
+ +A VP++PG D++ + + +PV+LKAA V + + E
Sbjct: 126 KALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAE 185
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
AQ EA A+FG MLVEKY+ +PRH+E+Q+ D++G ++L ERDCS+QRR+QKV+
Sbjct: 186 ALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVV 245
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA + +R A+ E +VR A+++GY AGTVEFLLD+ F+F+E+N RLQVEH +
Sbjct: 246 EEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVEHPV 305
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+V QI++A+G++L L QE++ G AI+ L EDP+ +F P++GRL
Sbjct: 306 TEAITGLDLVAWQIRVARGEALP---LTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLM 362
Query: 416 VFTDPAS-IGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
++ + A+ G RVDS G ++SP YD +LAK+I T + + +++ L ET V G
Sbjct: 363 LYREAAAGPGRRVDSGV-REGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGG 421
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFI----DD---NPQLLERNSYQTCRDMKILRFIG 527
+ TNL FL + F + E L+T FI DD PQ L + +Q + + G
Sbjct: 422 LRTNLAFLRRILGHPAFAAAE-LDTGFIARHQDDLLPAPQALPEHFWQAAAEAWLQSEPG 480
Query: 528 ETLVNGPMTPLYVN 541
+ P +P N
Sbjct: 481 HRRDDDPHSPWSRN 494
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 1358 GEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVA 1417
G + APM G+I+ L+V+ MK E I A GVVK ++ G V
Sbjct: 583 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVE 642
Query: 1418 QNDLVVVLD 1426
+ +V LD
Sbjct: 643 EGTPLVELD 651
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/474 (37%), Positives = 278/474 (58%), Gaps = 29/474 (6%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA--AY 116
KILIANR E+A RV + +MGI +V IYS+ DK + H D+A +G PP A +Y
Sbjct: 4 KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIG---PPPANQSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
+ I +++ + A+HPGYGFLSE FA+A+ G+ F+GP ++ +GDK+ ++
Sbjct: 61 IVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSK 120
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A +A+V +PG + D D+ + +++ +PV++KA+ N E
Sbjct: 121 KIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREG 180
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ +++EA SFG D + +EK++ +PRHIE+Q+L D +G+ ++L ER+CS+QRR QKV++
Sbjct: 181 FQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVE 240
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
AP+ + + R A+ E +V LAK++GY++AGTVEF++D NFYF+E+N RLQVEH ++
Sbjct: 241 EAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVT 300
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ITG+D+V+ I++A G+ L+ + Q + G AI+ L EDP R F PS GRL
Sbjct: 301 ELITGVDLVEQMIRVAAGEPLS---ITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTR 357
Query: 417 FTDPASI--------------------GIRVDSSCPYPGLQISPDYDSLLAKIIVHTATY 456
+ PA +R D+ Y G +IS YD ++AK+ T
Sbjct: 358 YRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGV-YEGGEISMYYDPMIAKLCTWAPTR 416
Query: 457 KSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
++ E MR AL+ +V G+ NLPFL V D KF+SG+ ++ P+ E
Sbjct: 417 AAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFE 470
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 5 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 64 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 123
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 124 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 183
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 184 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 243
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 244 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 302
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 358
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 359 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 417
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 418 KTNVDLQIRIMNDENFQHG 436
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 23 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 81
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 82 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 141
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 142 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 201
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 202 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 261
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 262 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 320
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 321 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 376
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 377 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 435
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 436 KTNVDLQIRIMNDENFQHG 454
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 181 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 356 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 415 KTNVDLQIRIMNDENFQHG 433
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 181 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 356 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 415 KTNVDLQIRIMNDENFQHG 433
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 335 bits (858), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 22 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 80
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 81 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 140
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 141 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 200
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 201 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 260
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 261 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 319
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 320 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 375
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 376 RFHAPGGAGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 434
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 435 KTNVDLQIRIMNDENFQHG 453
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 333 bits (855), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 267/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 5 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 64 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 123
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 124 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 183
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 184 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 243
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFI++N R+QVEH +
Sbjct: 244 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIKMNTRIQVEHPV 302
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 358
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 359 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 417
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 418 KTNVDLQIRIMNDENFQHG 436
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 333 bits (854), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 266/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC +GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 22 LDKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 80
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 81 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 140
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 141 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 200
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 201 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 260
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 261 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 319
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 320 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 375
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 376 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 434
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 435 KTNVDLQIRIMNDENFQHG 453
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 333 bits (853), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 266/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 181 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QV H +
Sbjct: 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVAHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 356 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 415 KTNVDLQIRIMNDENFQHG 433
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 332 bits (852), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 266/439 (60%), Gaps = 8/439 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+ + RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 5 LDKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 63
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 64 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 123
Query: 177 DAALKADVPIIPGTTEPVTD-VDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A KA VP +PG+ P+ D +DK + + +PVI+KA+ V + +
Sbjct: 124 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 183
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 184 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 243
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 244 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGE-FYFIEMNTRIQVEHPV 302
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L+ + QE++ +G A++C + EDP F PS G++
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 358
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 359 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 417
Query: 476 TTNLPFLLNVFDDKKFLSG 494
TN+ + + +D+ F G
Sbjct: 418 KTNVDLQIRIMNDENFQHG 436
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 305 bits (781), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/446 (39%), Positives = 263/446 (58%), Gaps = 8/446 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++ ILIANR E+A+R R E G K++ +YSE DK + + D + +GK +Y
Sbjct: 6 IKSILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSS-ESY 64
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ DAI PGYGFLSE ++F + ++FIGP+ DK A+
Sbjct: 65 LNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAK 124
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
+A VP+IPG+ + + K+ E+ +PVILKAA V N+ +E+
Sbjct: 125 QVXQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKA 184
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ A+SEA +FG EKYI PRHIEVQ++GD +G+V+H+ ERDCS QRR+QK+I+
Sbjct: 185 YWSAESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQKLIE 244
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+PA + R + ET+++ AK++GY AGT EFL+DK+ +FYFIE N RLQVEH +S
Sbjct: 245 ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEXNTRLQVEHCVS 304
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ++GID+++ IK+A+G +L QE I G +I+C + ED K F PS G++
Sbjct: 305 EXVSGIDIIEQXIKVAEGYALP----SQESIKLNGHSIECRITAEDSK-TFLPSPGKITK 359
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ PA +R +S C Y + YDS + K++V + K + AL+E +SG+
Sbjct: 360 YIPPAGRNVRXESHC-YQDYSVPAYYDSXIGKLVVWAEDRNKAIAKXKVALDELLISGIK 418
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFI 502
T F L+ ++ F++ +TN++
Sbjct: 419 TTKDFHLSXXENPDFINNN-YDTNYL 443
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 300 bits (768), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/436 (38%), Positives = 253/436 (58%), Gaps = 9/436 (2%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
E +LIANR E+A+R+ + MGIKSV +YS+ DK+S H T D + + G Y
Sbjct: 31 FETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVAL-HGRTAAETY 89
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+I +II AK AI PGYGFLSE DF+ + F+GP+ + ++ LG K AR
Sbjct: 90 LDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAR 149
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
+ A +A VP++PG+ + D + KE ++E+PV++K+ V ++D IE
Sbjct: 150 EIAERAKVPLVPGSGL-IKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERV 208
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ Q + + FG + +E++++ RH+E+Q++GD +G + + ERDCS+QRR QKVI+
Sbjct: 209 FETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIE 268
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQVEHTL 355
PA ++ + R + S RL L Y AGTVEF+ D+ D FYF+EVN RLQVEH +
Sbjct: 269 ETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPI 328
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E +TG+D+V+ ++IA S KI G +I+ L E+P ++F+PS G+L
Sbjct: 329 TEMVTGLDLVEWMLRIAANDSPD---FDNTKIEVSGASIEARLYAENPVKDFRPSPGQLT 385
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
+ P+ RVD+ G +S +YD LAKIIVH + K+ +AL ET V G
Sbjct: 386 SVSFPSW--ARVDTWVK-KGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGC 442
Query: 476 TTNLPFLLNVFDDKKF 491
TN+ +L ++ K F
Sbjct: 443 ITNIDYLRSIASSKMF 458
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1382 NDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
D +I++ MKTE ++ A+ G V +I + G V DLV V+
Sbjct: 1192 GDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/505 (28%), Positives = 244/505 (48%), Gaps = 70/505 (13%)
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTC 711
+ +K + +TD RDAHQSL ATR+R D+ + A + + + +SLE WGGA +C
Sbjct: 3 QAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPI----AQQLDQIGYWSLECWGGATFDSC 58
Query: 712 LKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771
++FL E PW+RL L++ +PN P QM+LRG +L+GY +Y+ V F A + G+D+FR
Sbjct: 59 IRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFR 118
Query: 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831
VFD +N V N+ + + AV+++ + + T+CY T+P ++L + D+A+QL E
Sbjct: 119 VFDAMNDVRNMQQALQAVKKMGAHA---QGTLCYT---TSP---VHNLQTWVDVAQQLAE 169
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891
G + LKDMAG+L P AA+ L+ + + K ++ +H+H H AG T L ++AG D
Sbjct: 170 LGVDSIALKDMAGILTPYAAEELVSTLK-KQVDVELHLHCHSTAGLADMTLLKAIEAGVD 228
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
VD A SMSG PA ++V+ L+ T G+D+ + ++Y+R VR+ Y +
Sbjct: 229 RVDTAISSMSGTYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFEGM- 287
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMS-- 1009
+K + + + ++PGG TN++ +
Sbjct: 288 -------------------------------MKGSDARILVAQVPGGMLTNMESQLKQQN 316
Query: 1010 ----FGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKI 1065
L E++ R FL TP+S++V A+ Y+ + + +
Sbjct: 317 ALDKLDLVLEEIPRVREELGFL----PLVTPTSQIVGTQAVINVVLGERYKTITKETSGV 372
Query: 1066 I------FPKSVTEFFQGSI---GEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACD 1116
+ P V Q + E P L + +L+D L++ E +A +
Sbjct: 373 LKGEYGKTPAPVNTELQARVLAGAEAITCRPADLIAAEMPTLQDRVLQQAKEQHITLAEN 432
Query: 1117 YREDEPFKMNKLIFPKATKKFMKFR 1141
+D + +F + KF+ R
Sbjct: 433 AIDD---VLTIALFDQVGWKFLANR 454
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 237/504 (47%), Gaps = 67/504 (13%)
Query: 56 TMEKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQD-KFSAHRTKVDQAFL 105
+EK+LIAN A++ R+ NE I+ V + + +D K +A K+ ++
Sbjct: 40 VIEKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 99
Query: 106 VGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
G P Y N+ I+ IAK V A+ G+G SE + ++ G+ F+GP
Sbjct: 100 PVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQA 159
Query: 166 LKTLGDKVLARDAALKADVPIIPGTTEP--------------------------VTDVDK 199
+ LGDK+ + A A +P +P + V DVD
Sbjct: 160 MWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDD 219
Query: 200 VKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYI 259
+ +EV +PV++KA+ V N D F++ Q+E S + V +
Sbjct: 220 GLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS----PIFVMRLA 275
Query: 260 DRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLA 319
+ RH+EVQIL D+YG+ + L+ RDCS+QRR+QK+I+ APA + +V + + + +V+LA
Sbjct: 276 KQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLA 335
Query: 320 KSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTE 379
K +GY +AGTVE+L +D +FYF+E+NPRLQVEH +E + +++ +Q++IA G L
Sbjct: 336 KMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYR 395
Query: 380 L-------GLCQEKIT------------PQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDP 420
+ G+ + P+G I + +E+P F+PS+G +
Sbjct: 396 IKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFR 455
Query: 421 ASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTNL 479
++ + S G + DS + + M AL+E + G T +
Sbjct: 456 SNKNVWGYFSVAAAG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTV 514
Query: 480 PFLLNVFDDKKFLSGEALETNFID 503
+L+ K L E+ + N ID
Sbjct: 515 EYLI------KLLETESFQMNRID 532
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 240/505 (47%), Gaps = 63/505 (12%)
Query: 56 TMEKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQD-KFSAHRTKVDQAFL 105
+EK+LIAN A++ R+ NE I+ V + + +D K +A K+ ++
Sbjct: 39 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 98
Query: 106 VGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 99 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 158
Query: 166 LKTLGDKVLARDAALKADVPIIPGTTEPVT---------------------------DVD 198
+ LGDK+ + A VP +P + +T DVD
Sbjct: 159 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 218
Query: 199 KVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKY 258
+ E + + FP+++KA+ + + F++ QSE S + + K
Sbjct: 219 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKL 274
Query: 259 IDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRL 318
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RL
Sbjct: 275 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 334
Query: 319 AKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378
AK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 335 AKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 394
Query: 379 EL-------GLCQEKITP------------QGCAIQCHLRTEDPKRNFQPSTGRLDVFTD 419
L G +TP +G I + +E+P F+PS+G +
Sbjct: 395 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNF 454
Query: 420 PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTN 478
+S + S G + DS + + M AL+E + G T
Sbjct: 455 RSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTT 513
Query: 479 LPFLLNVFDDKKFLSGEALETNFID 503
+ +L+N+ + + F + + ++T ++D
Sbjct: 514 VEYLINLLETESFQNND-IDTGWLD 537
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 240/505 (47%), Gaps = 63/505 (12%)
Query: 56 TMEKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQD-KFSAHRTKVDQAFL 105
+EK+LIAN A++ R+ NE I+ V + + +D K +A K+ ++
Sbjct: 55 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 114
Query: 106 VGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 115 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 174
Query: 166 LKTLGDKVLARDAALKADVPIIPGTTEPVT---------------------------DVD 198
+ LGDK+ + A VP +P + +T DVD
Sbjct: 175 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 234
Query: 199 KVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKY 258
+ E + + FP+++KA+ + + F++ QSE S + + K
Sbjct: 235 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKL 290
Query: 259 IDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRL 318
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RL
Sbjct: 291 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 350
Query: 319 AKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378
AK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 351 AKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 410
Query: 379 EL-------GLCQEKITP------------QGCAIQCHLRTEDPKRNFQPSTGRLDVFTD 419
L G +TP +G I + +E+P F+PS+G +
Sbjct: 411 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNF 470
Query: 420 PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTN 478
+S + S G + DS + + M AL+E + G T
Sbjct: 471 RSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTT 529
Query: 479 LPFLLNVFDDKKFLSGEALETNFID 503
+ +L+N+ + + F + + ++T ++D
Sbjct: 530 VEYLINLLETESFQNND-IDTGWLD 553
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 240/505 (47%), Gaps = 63/505 (12%)
Query: 56 TMEKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQD-KFSAHRTKVDQAFL 105
+EK+LIAN A++ R+ NE I+ V + + +D K +A K+ ++
Sbjct: 55 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 114
Query: 106 VGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 115 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 174
Query: 166 LKTLGDKVLARDAALKADVPIIPGTTEPVT---------------------------DVD 198
+ LGDK+ + A VP +P + +T DVD
Sbjct: 175 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 234
Query: 199 KVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKY 258
+ E + + FP+++KA+ + + F++ QSE S + + K
Sbjct: 235 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKL 290
Query: 259 IDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRL 318
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RL
Sbjct: 291 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 350
Query: 319 AKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378
AK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 351 AKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 410
Query: 379 EL-------GLCQEKITP------------QGCAIQCHLRTEDPKRNFQPSTGRLDVFTD 419
L G +TP +G I + +E+P F+PS+G +
Sbjct: 411 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNF 470
Query: 420 PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTN 478
+S + S G + DS + + M AL+E + G T
Sbjct: 471 RSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTT 529
Query: 479 LPFLLNVFDDKKFLSGEALETNFID 503
+ +L+N+ + + F + + ++T ++D
Sbjct: 530 VEYLINLLETESFQNND-IDTGWLD 553
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 240/505 (47%), Gaps = 63/505 (12%)
Query: 56 TMEKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQD-KFSAHRTKVDQAFL 105
+EK+LIAN A++ R+ NE I+ V + + +D K +A K+ ++
Sbjct: 49 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 108
Query: 106 VGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 109 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 168
Query: 166 LKTLGDKVLARDAALKADVPIIPGTTEPVT---------------------------DVD 198
+ LGDK+ + A VP +P + +T DVD
Sbjct: 169 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 228
Query: 199 KVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKY 258
+ E + + FP+++KA+ + + F++ QSE S + + K
Sbjct: 229 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKL 284
Query: 259 IDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRL 318
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RL
Sbjct: 285 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 344
Query: 319 AKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378
AK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 345 AKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 404
Query: 379 EL-------GLCQEKITP------------QGCAIQCHLRTEDPKRNFQPSTGRLDVFTD 419
L G +TP +G I + +E+P F+PS+G +
Sbjct: 405 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNF 464
Query: 420 PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTN 478
+S + S G + DS + + M AL+E + G T
Sbjct: 465 RSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTT 523
Query: 479 LPFLLNVFDDKKFLSGEALETNFID 503
+ +L+N+ + + F + + ++T ++D
Sbjct: 524 VEYLINLLETESFQNND-IDTGWLD 547
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/402 (30%), Positives = 194/402 (48%), Gaps = 55/402 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL+ATR+ D+ V +S+E WGGA +C+
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDM--VGACADIDAAGYWSVECWGGATYDSCI 76
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FRV
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 136
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD +N N+ M AV++ + TICY +P +++ Y LA QL++
Sbjct: 137 FDAMNDPRNMAHAMAAVKK---AGKHAQGTICYT---ISP---VHTVEGYVKLAGQLLDM 187
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGAD 891
GA + LKDMA LLKP A +I + ++ Y I++H H G + + ++AG D
Sbjct: 188 GADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 247
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
+VD A SMS ++ LE T +D Y R
Sbjct: 248 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLD---------YDR------------- 285
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
LH + D +++ +R Y FE L + + +IPGG +N++ + + G
Sbjct: 286 ------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGMLSNMESQLRAQG 334
Query: 1012 LD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047
+ +V R + A F TPSS++V A+F
Sbjct: 335 AEDKMDEVMAEVPRVRKAAGF----PPLVTPSSQIVGTQAVF 372
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 230/512 (44%), Gaps = 70/512 (13%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVG----------IYSEQDKFSAHRTKVDQAFLV 106
+ KILIAN A++ R+ + ++ G E + +A ++ ++
Sbjct: 46 ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIE 105
Query: 107 GKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLE--FIGPAPN 164
G Y N+ I+ IA+ +VDA+ G+G SE + + + + FIGP N
Sbjct: 106 VPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGN 165
Query: 165 VLKTLGDKVLARDAALKADVPIIPGTTEPV-------------TDVDKVKEFC------- 204
+++LGDK+ + A A VP IP + V D D ++ C
Sbjct: 166 AMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDG 225
Query: 205 ----DEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYID 260
+ FPV++KA+ V EE+F +A + + K
Sbjct: 226 LQKAKRIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMKLAG 281
Query: 261 RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAK 320
R RH+EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VRL K
Sbjct: 282 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGK 341
Query: 321 SLGYSNAGTVEFLLDKDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG----- 374
+GY +AGTVE+L DD FYF+E+NPRLQVEH +E ++G+++ +Q++IA G
Sbjct: 342 LVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHR 401
Query: 375 ------------KSLTELGL---------CQEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
S +E+ Q + P+G C + +EDP F+PS G
Sbjct: 402 ISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGT 461
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
L +S + S G I DS I ++S + M AL+E +
Sbjct: 462 LHELNFRSSSNVWGYFSVGNNG-NIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR 520
Query: 474 G-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
G T + +L+ + + + F + T ++DD
Sbjct: 521 GDFRTTVEYLIKLLETEDF-EDNTITTGWLDD 551
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 230/512 (44%), Gaps = 70/512 (13%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVG----------IYSEQDKFSAHRTKVDQAFLV 106
+ KILIAN A++ R+ + ++ G E + +A ++ ++
Sbjct: 47 ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIE 106
Query: 107 GKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLE--FIGPAPN 164
G Y N+ I+ IA+ +VDA+ G+G SE + + + + FIGP N
Sbjct: 107 VPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGN 166
Query: 165 VLKTLGDKVLARDAALKADVPIIPGTTEPV-------------TDVDKVKEFC------- 204
+++LGDK+ + A A VP IP + V D D ++ C
Sbjct: 167 AMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDG 226
Query: 205 ----DEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYID 260
+ FPV++KA+ V EE+F +A + + K
Sbjct: 227 LQKAKRIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMKLAG 282
Query: 261 RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAK 320
R RH+EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VRL K
Sbjct: 283 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGK 342
Query: 321 SLGYSNAGTVEFLLDKDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG----- 374
+GY +AGTVE+L DD FYF+E+NPRLQVEH +E ++G+++ +Q++IA G
Sbjct: 343 LVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHR 402
Query: 375 ------------KSLTELGL---------CQEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
S +E+ Q + P+G C + +EDP F+PS G
Sbjct: 403 ISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGT 462
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
L +S + S G I DS I ++S + M AL+E +
Sbjct: 463 LHELNFRSSSNVWGYFSVGNNG-NIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR 521
Query: 474 G-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
G T + +L+ + + + F + T ++DD
Sbjct: 522 GDFRTTVEYLIKLLETEDF-EDNTITTGWLDD 552
>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t
Length = 539
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 192/402 (47%), Gaps = 55/402 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL+ATR+ D+ V +S+E WGG +C+
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDM--VGACADIDAAGYWSVECWGGTTYDSCI 76
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FRV
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 136
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD +N N+ M AV++ + TICY +P +++ Y LA QL++
Sbjct: 137 FDAMNDPRNMAHAMAAVKK---AGKHAQGTICYT---ISP---VHTVEGYVKLAGQLLDM 187
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGAD 891
GA + L DMA LLKP A +I + ++ Y I++H H G + + ++AG D
Sbjct: 188 GADSIALXDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 247
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
+VD A SMS ++ LE T +D Y R
Sbjct: 248 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLD---------YDR------------- 285
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
LH + D +++ +R Y FE L + + +IPGG +N++ + + G
Sbjct: 286 ------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGMLSNMESQLRAQG 334
Query: 1012 LD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047
+ +V R + A F TPSS++V A+F
Sbjct: 335 AEDKMDEVMAEVPRVRKAAGF----PPLVTPSSQIVGTQAVF 372
>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
Met186ile
Length = 539
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 193/402 (48%), Gaps = 55/402 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL+ATR+ D+ V +S+E WGGA +C+
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDM--VGACADIDAAGYWSVECWGGATYDSCI 76
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FRV
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 136
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD +N N+ M AV++ + TICY +P +++ Y LA QL++
Sbjct: 137 FDAMNDPRNMAHAMAAVKK---AGKHAQGTICYT---ISP---VHTVEGYVKLAGQLLDM 187
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGAD 891
GA + L D+A LLKP A +I + ++ Y I++H H G + + ++AG D
Sbjct: 188 GADSIALXDIAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 247
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
+VD A SMS ++ LE T +D Y R
Sbjct: 248 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLD---------YDR------------- 285
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
LH + D +++ +R Y FE L + + +IPGG +N++ + + G
Sbjct: 286 ------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGMLSNMESQLRAQG 334
Query: 1012 LD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047
+ +V R + A F TPSS++V A+F
Sbjct: 335 AEDKMDEVMAEVPRVRKAAGF----PPLVTPSSQIVGTQAVF 372
>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To 2- Ketobutyric Acid
Length = 473
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 194/403 (48%), Gaps = 56/403 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL+ATR+ D+ V +S+E WGGA +C+
Sbjct: 6 VSEPREVGITELVLRDAHQSLMATRMAMEDM--VGACADIDAAGYWSVECWGGATYDSCI 63
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FRV
Sbjct: 64 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 123
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD +N N+ M AV++ + TICY +P +++ Y LA QL++
Sbjct: 124 FDAMNDPRNMAHAMAAVKK---AGKHAQGTICYT---ISP---VHTVEGYVKLAGQLLDM 174
Query: 833 GAQVLCL-KDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890
GA + L KDMA LLKP A +I + ++ Y I++H H G + + ++AG
Sbjct: 175 GADSIALXKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGV 234
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
D+VD A SMS ++ LE T +D Y R
Sbjct: 235 DVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLD---------YDR------------ 273
Query: 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF 1010
LH + D +++ +R Y FE L + + +IPGG +N++ + +
Sbjct: 274 -------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGMLSNMESQLRAQ 321
Query: 1011 GLD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047
G + +V R + A F TPSS++V A+F
Sbjct: 322 GAEDKMDEVMAEVPRVRKAAGF----PPLVTPSSQIVGTQAVF 360
>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Pyruvic Acid
Length = 472
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 194/403 (48%), Gaps = 56/403 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL+ATR+ D+ V +S+E WGGA +C+
Sbjct: 5 VSEPREVGITELVLRDAHQSLMATRMAMEDM--VGACADIDAAGYWSVECWGGATYDSCI 62
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FRV
Sbjct: 63 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 122
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD +N N+ M AV++ + TICY +P +++ Y LA QL++
Sbjct: 123 FDAMNDPRNMAHAMAAVKK---AGKHAQGTICYT---ISP---VHTVEGYVKLAGQLLDM 173
Query: 833 GAQVLCL-KDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890
GA + L KDMA LLKP A +I + ++ Y I++H H G + + ++AG
Sbjct: 174 GADSIALXKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGV 233
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
D+VD A SMS ++ LE T +D Y R
Sbjct: 234 DVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLD---------YDR------------ 272
Query: 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF 1010
LH + D +++ +R Y FE L + + +IPGG +N++ + +
Sbjct: 273 -------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGMLSNMESQLRAQ 320
Query: 1011 GLD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047
G + +V R + A F TPSS++V A+F
Sbjct: 321 GAEDKMDEVMAEVPRVRKAAGF----PPLVTPSSQIVGTQAVF 359
>pdb|1RQB|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Length = 539
Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 185/418 (44%), Gaps = 55/418 (13%)
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
V + + + +T+ RDAHQSL ATR D V +S+E WGGA +C+
Sbjct: 19 VSEPREVGITELVLRDAHQSLXATRXAXED--XVGACADIDAAGYWSVECWGGATYDSCI 76
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL E PWERL R+L PN Q +LRG +L+GY +Y+ V F +++ G D+FRV
Sbjct: 77 RFLNEDPWERLRTFRKLXPNSRLQXLLRGQNLLGYRHYNDEVVDRFVDKSAENGXDVFRV 136
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD N N AV++ + + TICY +P +++ Y LA QL++
Sbjct: 137 FDAXNDPRNXAHAXAAVKKAGKHA---QGTICYT---ISP---VHTVEGYVKLAGQLLDX 187
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGAD 891
GA + L D A LLKP A +I + ++ Y I++H H G + ++AG D
Sbjct: 188 GADSIALXDXAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLXKAIEAGVD 247
Query: 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
+VD A S S ++ LE T +D Y R
Sbjct: 248 VVDTAISSXSLGPGHNPTESVAEXLEGTGYTTNLD---------YDR------------- 285
Query: 952 WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
LH + D +++ +R Y FE L + + +IPGG +N + + + G
Sbjct: 286 ------LHKIRD---HFKAIRPKYKKFESKTL--VDTSIFKSQIPGGXLSNXESQLRAQG 334
Query: 1012 LD------FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENAD 1063
+ +V R + A F TPSS++V A+F R E AD
Sbjct: 335 AEDKXDEVXAEVPRVRKAAGF----PPLVTPSSQIVGTQAVFNVXXGEYKRXTGEFAD 388
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVAN 229
GDK+ ++ A KA+V IPG V D ++ E+ +PV++KA+ +
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+ + F+ + EA +SFG D +L+EK+ID PRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 38/286 (13%)
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
++ EI+ I K V + G L A+A+ AG+ IG +P+ + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 178 AA--LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A LK P VT ++ E E+ +P++++A++ V + E
Sbjct: 681 AVERLKLKQP----ANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EA 732
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK----YGDV--------VHLYER 283
+ +R A++ +L++ ++D ++V + D G + VH +
Sbjct: 733 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDS 792
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
CS+ PA +S ++D + + +LA L V+F + K++ Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 344 EVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITP 389
EVNPR + TG+ + + ++ GKSL E G+ +E I P
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 206 EVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+V FP I++ +F N++ EE R L ++L+++ + +
Sbjct: 161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARG----LDLSPTKELLIDESLIGWKEY 216
Query: 266 EVQILGDKYGD--VVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG 323
E++++ DK + +V E +M I +APAQ ++ + S+ + + +G
Sbjct: 217 EMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG 276
Query: 324 YSNAGT-VEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
G+ V+F ++ K+ IE+NPR+ L+ + TG + + K+A G +L EL
Sbjct: 277 VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL 335
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 38/286 (13%)
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
++ EI+ I K V + G L A+A+ AG+ IG +P+ + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 178 AA--LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A LK P VT ++ E E+ +P++++ ++ V + E
Sbjct: 681 AVERLKLKQP----ANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYD----EA 732
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK----YGDV--------VHLYER 283
+ +R A++ +L++ ++D ++V + D G + VH +
Sbjct: 733 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDS 792
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
CS+ PA +S ++D + + +LA L V+F + K++ Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 344 EVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITP 389
EVNPR + TG+ + + ++ GKSL E G+ +E I P
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 206 EVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+V FP I++ +F N++ EE R L ++L+++ + +
Sbjct: 161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARG----LDLSPTKELLIDESLIGWKEY 216
Query: 266 EVQILGDKYGD--VVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG 323
E++++ DK + +V E +M I +APAQ ++ + S+ + + +G
Sbjct: 217 EMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG 276
Query: 324 YSNAGT-VEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
G+ V+F ++ K+ IE+NPR+ L+ + TG + + K+A G +L EL
Sbjct: 277 VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL 335
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 38/286 (13%)
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
++ EI+ I K V + G L A+A+ AG+ IG +P+ + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 178 AA--LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEE 235
A LK P VT ++ E E+ +P++++ ++ V + E
Sbjct: 681 AVERLKLKQP----ANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYD----EA 732
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK----YGDV--------VHLYER 283
+ +R A++ +L++ ++D ++V + D G + VH +
Sbjct: 733 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDS 792
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
CS+ PA +S ++D + + +LA L V+F + K++ Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 344 EVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITP 389
EVNPR + TG+ + + ++ GKSL E G+ +E I P
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 206 EVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+V FP I++ +F N++ EE R L ++L+++ + +
Sbjct: 161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARG----LDLSPTKELLIDESLIGWKEY 216
Query: 266 EVQILGDKYGD--VVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG 323
E++++ DK + +V E +M I +APAQ ++ + S+ + + +G
Sbjct: 217 EMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG 276
Query: 324 YSNAGT-VEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
G+ V+F ++ K+ IE+NPR+ L+ + TG + + K+A G +L EL
Sbjct: 277 VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL 335
>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|B Chain B, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|C Chain C, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|D Chain D, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181
Length = 307
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 6/145 (4%)
Query: 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT 871
P +K + L++ L E G L L D G P + ++ + ++P I +H
Sbjct: 149 PYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHF 208
Query: 872 HDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP------AMGTIVSCLENTDKRCGI 925
HD GT +A + ++ G + D +A + G P A IV LE D + +
Sbjct: 209 HDTRGTALANXVTALQXGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYXLEQXDIKTNV 268
Query: 926 DLHDVCDYSSYWRKVRELYAPAHNL 950
L + + + + P+ NL
Sbjct: 269 KLEKLLSAAKWIEEKXGKPLPSRNL 293
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 206 EVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQS---EALASF--GKDDMLVEKYID 260
++ +P+++K V ++ +EE ++ ++ L F GK ++ E++ID
Sbjct: 143 KLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID 202
Query: 261 RPRH-IE-VQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRL 318
P IE + I G+ + V+ + + S +++ + IAPAQ + R AI +
Sbjct: 203 GPEFAIETLSIQGNVH--VLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGA 259
Query: 319 AKSLG-YSNAGTVEFLLDKDDNFYFIEVNPRL---QVEHTLSEEITGIDVVQ 366
+LG + E LDKD Y IEV R+ V H + +E TGI+ +Q
Sbjct: 260 VSALGIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQ 311
>pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Malonate
pdb|3BLF|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate
pdb|3BLI|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate And Acetyl-Coa
Length = 337
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 27/283 (9%)
Query: 644 MGAGEFVNSVRKLKHIL-LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEM 702
MG + V+ + K++ L + D T RD Q+ T + ++ F+ + N + +E+
Sbjct: 4 MGRSQKVSQMTKVETRLEILDVTLRDGEQTR-GVSFSTSEKLNIAKFLLQKLN-VDRVEI 61
Query: 703 WGGAVSHTCLKFLKEC-PWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV------ 755
VS L+ +++ W +L E I + F + GN V + S A+V
Sbjct: 62 ASARVSKGELETVQKIMEWAATEQLTERIEILGF---VDGNKTVDWIKDSGAKVLNLLTK 118
Query: 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815
G+ L Q G F ++ V + G I Y D +N +
Sbjct: 119 GSLHHLEKQLGKTPKEFFTDVSFVIEYA--------IKSGLKIN----VYLEDWSNGFRN 166
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875
S +Y + L + L + + + L D G+L P + S +KYP+I H H+
Sbjct: 167 --SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDY 224
Query: 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN 918
VA +L ++AG + + + + + +V+ + +
Sbjct: 225 DLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHD 267
>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|B Chain B, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|C Chain C, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|D Chain D, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|E Chain E, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|F Chain F, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|3MP3|A Chain A, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|B Chain B, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|C Chain C, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|D Chain D, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|E Chain E, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|F Chain F, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
Length = 298
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 809 LTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIH 868
L P + K S ++ K+ G + L D G+ P K ++ + ++ P +
Sbjct: 145 LGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALA 204
Query: 869 VHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC--SQPAMGT-----IVSCLENTDK 921
VH HD G +A TL ++ G +VD + + G C +Q A G +V LE
Sbjct: 205 VHCHDTYGQALANTLMALQMGVSVVDSSVAGLGG-CPYAQGASGNLATEDLVYMLEGLGI 263
Query: 922 RCGIDLHDVCDYSSY 936
G++L + + ++
Sbjct: 264 HTGVNLQKLLEAGNF 278
>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|B Chain B, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|C Chain C, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|D Chain D, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|E Chain E, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|F Chain F, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP5|A Chain A, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|B Chain B, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|C Chain C, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|D Chain D, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|E Chain E, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|F Chain F, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
Length = 298
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 809 LTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIH 868
L P + K S ++ K+ G + L D G+ P K ++ + ++ P +
Sbjct: 145 LGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALA 204
Query: 869 VHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC--SQPAMGT-----IVSCLENTDK 921
VH HD G +A TL ++ G +VD + + G C +Q A G +V LE
Sbjct: 205 VHCHDTYGQALANTLMALQMGVSVVDSSVAGLGG-CPYAQGASGNLATEDLVYMLEGLGI 263
Query: 922 RCGIDLHDVCDYSSY 936
G++L + + ++
Sbjct: 264 HTGVNLQKLLEAGNF 278
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 1360 IGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
+ APMPG ++ L+V+ MK E I + DGVVK I V+ G V
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAV 64
>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
pdb|3RMJ|B Chain B, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
Length = 370
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTH 872
+ +++ ++ ++E+GA + + D G P + K PN ++ H H
Sbjct: 153 RSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCH 212
Query: 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917
+ G VA +LA +K GA V+ + + ++ IV L+
Sbjct: 213 NDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALK 257
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 1362 APMPGNIIEXXXXXXXXXXXNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDL 1421
APM G I + D L+VM MK E I + DG VK++F G Q ++
Sbjct: 19 APMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTP 78
Query: 1422 VV 1423
+V
Sbjct: 79 LV 80
>pdb|3EWB|X Chain X, Crystal Structure Of N-Terminal Domain Of Putative 2-
Isopropylmalate Synthase From Listeria Monocytogenes
Length = 293
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFR---EKYPNILIHVHTHDMAGTGVATTLACV 886
+++GA V+ + D G PT L R +++ +I+ H HD G A LA +
Sbjct: 160 IDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGXATANALAAI 219
Query: 887 KAGA 890
+ GA
Sbjct: 220 ENGA 223
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 109 GMPPVAAYLNIPE-----IICIAKNNNVDAIHPG------YGFLSEREDFAKAVIGAGLE 157
GM A +NI E ++ AK N V G G + E E AGL
Sbjct: 36 GMAASAQLVNIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEK-------AGLH 88
Query: 158 FIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
GP+ G K A+D K D+P E T D+ K + E P+++KA
Sbjct: 89 VFGPSKAAAIIEGSKQFAKDLMKKYDIPT--AEYETFTSFDEAKAYVQEKGAPIVIKA 144
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc 1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc 1.3s)
Length = 77
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1358 GEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
GEI AP+ G + + ++V+ MK ET I+A DG V+++ V+
Sbjct: 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 154 AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213
AGL GP+ G K A+D K D+P E T D+ K + E P+++
Sbjct: 85 AGLHVFGPSKAAAIIEGSKQFAKDLXKKYDIPT--AEYETFTSFDEAKAYVQEKGAPIVI 142
Query: 214 KA 215
KA
Sbjct: 143 KA 144
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1358 GEIGAPMPGNIIEXXXXXXXXXXXNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
GEI AP+ G + + ++V+ MK ET I+A DG V+++ V+
Sbjct: 16 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 69
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214
GL+ GP K G K A+ K +P E TD +K KE+ ++V P+++K
Sbjct: 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPT--ARYEVFTDFEKAKEYVEKVGAPIVVK 143
Query: 215 A 215
A
Sbjct: 144 A 144
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348
APA D + V +A + +VR+A +LGY VEF + +D +F E+ PR
Sbjct: 255 APAAD-TARVEEA-QQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPR 303
>pdb|3CD1|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
pdb|3CD9|A Chain A, Development Of A Family Of Redox-Sensitive Green
Fluorescent Protein Indicators For Use In Relatively
Oxidizing Subcellular Environments
Length = 248
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 447 AKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNP 506
I+ H Y +CE + + Q +G+ N N+ D L+ + I D P
Sbjct: 143 GNILGHKLEYNYNCESNVYIMADKQKNGIKANFKTRHNIEDGSVQLADHYQQNTPIGDGP 202
Query: 507 QLLERNSY-QTC----------RD-MKILRFIGETLVNGPMTPLY 539
LL N Y TC RD M +L F+ + M LY
Sbjct: 203 VLLPDNHYLSTCSALSKDPNEKRDHMVLLEFVTAAGITHGMDELY 247
>pdb|3DXI|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
pdb|3DXI|B Chain B, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
Length = 320
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
++ A + C D G + P K L+ R KY ++ + H HD G+ ++ + G
Sbjct: 153 IDKIADLFCXVDSFGGITPKEVKNLLKEVR-KYTHVPVGFHGHDNLQLGLINSITAIDDG 211
Query: 890 ADIVD 894
D +D
Sbjct: 212 IDFID 216
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 209 FPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQ 268
PVI+K + V ++A+++ + LA +++L+EK++ P V
Sbjct: 139 LPVIVKPSREGSSVGMSKVVAENALQDALR------LAFQHDEEVLIEKWLSGP-EFTVA 191
Query: 269 ILGDKYGDVVHLYER----DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
ILG++ + + D + + PA + S + ++ +LG
Sbjct: 192 ILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGC 250
Query: 325 SNAGTVEFLLDKDDNFYFIEVN 346
G ++ +LD D FY +E N
Sbjct: 251 KGWGRIDVMLDSDGQFYLLEAN 272
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 209 FPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQ 268
PVI+K + V ++A+++ + LA +++L+EK++ P V
Sbjct: 139 LPVIVKPSREGSSVGMSKVVAENALQDALR------LAFQHDEEVLIEKWLSGP-EFTVA 191
Query: 269 ILGDKYGDVVHLYER----DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
ILG++ + + D + + PA + S + ++ +LG
Sbjct: 192 ILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGC 250
Query: 325 SNAGTVEFLLDKDDNFYFIEVN 346
G ++ +LD D FY +E N
Sbjct: 251 KGWGRIDVMLDSDGQFYLLEAN 272
>pdb|4EGJ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|C Chain C, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|D Chain D, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
Length = 334
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 322 LGYSNAGTVEFLLDKDDNFYFIEVN 346
LG ++ G +F+LD D N YF+EVN
Sbjct: 274 LGCTDWGRADFMLDADGNPYFLEVN 298
>pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JW7|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JW7|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ile-L-Tyr
pdb|3JZU|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3JZU|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Leu-L-Tyr
pdb|3K1G|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3K1G|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Ser-L-Tyr
pdb|3KUM|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
pdb|3KUM|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide L-Arg-L-Tyr
Length = 354
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 958 LHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDV 1017
+H+V D S + + C DL ++ LY++ GG Y N ++ G+D +V
Sbjct: 84 IHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGG-YDNQVITDITLGIDEPNV 142
Query: 1018 KRAYRTANFLLG-DIIKCTPSSKVVADLA 1045
LG D +K + + AD+A
Sbjct: 143 MAQKAVEKVKLGFDTLKIKVGTGIEADIA 171
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 823 EDLAKQ--LVES-GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTG 878
E LA+Q L+ES GA + + D G + + + +F+ P + +H H G
Sbjct: 149 EKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLG 208
Query: 879 VATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCD 932
VA ++ V+ G D VD + M + ++ E G DL+ + D
Sbjct: 209 VANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDLYTLMD 262
>pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
pdb|4EG0|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
Length = 317
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 696 NLYSLEMWGGAVSHTCL---KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSP 752
+ Y + G V + L KF + W++ +P PF+ ++RG+ +
Sbjct: 88 DFYGIRYTGSGVLGSALGLDKFRTKLVWQQTG-----VPTPPFETVMRGDDYAARATDIV 142
Query: 753 AEVGA--FCRLASQ-AGIDIFRV--FDPLNSVPNLVKGMDAV----QQVTGGSTIVEATI 803
A++G F + AS+ + + + +V D L + + D + + + GG E T
Sbjct: 143 AKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGGG---EYTA 199
Query: 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837
C AGDL P K + D + V + Q L
Sbjct: 200 CIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYL 233
>pdb|3GFV|A Chain A, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
pdb|3GFV|B Chain B, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
Length = 303
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 1029 GDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPK 1088
G + P VV D T +KL D++ K + PK +++F K
Sbjct: 27 GTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKF-------------K 73
Query: 1089 KLQEKVLDSLKDHALERKAEFDP-IMACDYREDEPFKMNKLIFP 1131
+ + SLK+ ++ AE DP ++ R+ E +K I P
Sbjct: 74 DDKYADVGSLKEPDFDKVAELDPDLIIISARQSESYKEFSKIAP 117
>pdb|3HN2|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|B Chain B, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|C Chain C, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|D Chain D, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
Length = 312
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFR 859
DL K ++ + YE+L + LVE G Q+L L++ GL A L G+ R
Sbjct: 71 DLVLVGLKTFANSRYEELIRPLVEEGTQILTLQN--GLGNEEALATLFGAER 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,365,522
Number of Sequences: 62578
Number of extensions: 1689727
Number of successful extensions: 4551
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4145
Number of HSP's gapped (non-prelim): 177
length of query: 1427
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1316
effective length of database: 8,027,179
effective search space: 10563767564
effective search space used: 10563767564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)