Query psy15244
Match_columns 1427
No_of_seqs 1212 out of 7450
Neff 6.8
Searched_HMMs 46136
Date Sat Aug 17 01:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1038 PycA Pyruvate carboxyl 100.0 3E-294 6E-299 2539.6 100.8 1136 55-1426 5-1148(1149)
2 KOG0369|consensus 100.0 9E-278 2E-282 2350.3 92.1 1140 57-1426 33-1175(1176)
3 TIGR01235 pyruv_carbox pyruvat 100.0 5E-244 1E-248 2346.6 122.6 1133 59-1426 1-1143(1143)
4 PRK12999 pyruvate carboxylase; 100.0 2E-232 4E-237 2250.9 125.4 1135 55-1426 3-1145(1146)
5 PRK14042 pyruvate carboxylase 100.0 7E-136 2E-140 1249.4 59.9 586 656-1427 1-595 (596)
6 PRK09282 pyruvate carboxylase 100.0 5E-126 1E-130 1173.7 66.8 584 656-1426 1-591 (592)
7 PRK14040 oxaloacetate decarbox 100.0 2E-124 4E-129 1156.4 62.6 587 657-1425 3-592 (593)
8 TIGR01108 oadA oxaloacetate de 100.0 2E-122 5E-127 1137.8 59.4 579 661-1422 1-582 (582)
9 COG5016 Pyruvate/oxaloacetate 100.0 4E-115 8E-120 974.1 38.0 443 656-1199 3-449 (472)
10 PRK12581 oxaloacetate decarbox 100.0 4E-113 8E-118 1017.9 48.0 449 655-1206 9-462 (468)
11 COG4770 Acetyl/propionyl-CoA c 100.0 9E-112 2E-116 979.4 41.8 452 56-513 1-453 (645)
12 PRK12330 oxaloacetate decarbox 100.0 2E-110 4E-115 1003.2 51.4 444 657-1200 3-451 (499)
13 KOG0238|consensus 100.0 2E-107 5E-112 924.8 39.0 447 60-512 1-449 (670)
14 PRK14041 oxaloacetate decarbox 100.0 3E-104 7E-109 949.4 48.8 439 658-1199 2-442 (467)
15 PRK12331 oxaloacetate decarbox 100.0 8E-104 2E-108 946.3 48.7 440 657-1199 2-446 (448)
16 COG0439 AccC Biotin carboxylas 100.0 2.2E-90 4.7E-95 822.3 46.6 444 56-505 1-444 (449)
17 PRK08654 pyruvate carboxylase 100.0 8.3E-87 1.8E-91 818.6 52.0 448 56-510 1-448 (499)
18 PRK07178 pyruvate carboxylase 100.0 7.2E-82 1.6E-86 775.0 53.6 460 56-523 1-460 (472)
19 PRK08463 acetyl-CoA carboxylas 100.0 4.1E-80 8.8E-85 760.0 52.8 449 56-511 1-451 (478)
20 PRK12833 acetyl-CoA carboxylas 100.0 7.5E-80 1.6E-84 756.2 53.2 448 55-509 3-452 (467)
21 TIGR02712 urea_carbox urea car 100.0 8.2E-76 1.8E-80 775.7 67.5 440 57-505 1-443 (1201)
22 PRK05586 biotin carboxylase; V 100.0 1.7E-75 3.8E-80 715.6 50.0 444 56-505 1-444 (447)
23 TIGR00514 accC acetyl-CoA carb 100.0 6.1E-74 1.3E-78 702.7 52.2 444 56-505 1-444 (449)
24 PRK08462 biotin carboxylase; V 100.0 1E-72 2.2E-77 691.8 52.0 443 55-505 2-444 (445)
25 PRK08591 acetyl-CoA carboxylas 100.0 7.1E-71 1.5E-75 677.0 52.4 444 56-505 1-444 (451)
26 KOG0368|consensus 100.0 4.2E-68 9.1E-73 650.9 35.4 444 55-505 52-550 (2196)
27 PRK06111 acetyl-CoA carboxylas 100.0 1.3E-60 2.8E-65 586.3 52.5 443 56-505 1-443 (450)
28 PRK11858 aksA trans-homoaconit 100.0 3.2E-58 7E-63 548.0 36.3 333 656-1027 2-351 (378)
29 TIGR02660 nifV_homocitr homoci 100.0 1.1E-57 2.4E-62 541.9 37.1 331 658-1027 1-348 (365)
30 TIGR02090 LEU1_arch isopropylm 100.0 2.2E-57 4.7E-62 538.2 36.5 330 659-1027 1-347 (363)
31 PRK00915 2-isopropylmalate syn 100.0 5.2E-56 1.1E-60 546.5 37.8 335 656-1028 2-364 (513)
32 PRK09389 (R)-citramalate synth 100.0 1.2E-55 2.5E-60 538.5 36.3 331 658-1027 2-349 (488)
33 PLN03228 methylthioalkylmalate 100.0 2.5E-55 5.3E-60 530.9 35.9 338 654-1028 80-459 (503)
34 TIGR00973 leuA_bact 2-isopropy 100.0 9.4E-55 2E-59 531.9 37.1 332 658-1027 1-360 (494)
35 PRK12344 putative alpha-isopro 100.0 1.5E-54 3.2E-59 532.9 37.5 359 656-1050 3-385 (524)
36 PLN02321 2-isopropylmalate syn 100.0 1.1E-54 2.4E-59 535.6 36.3 346 645-1027 73-459 (632)
37 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 1.3E-54 2.9E-59 496.8 31.7 269 661-941 1-269 (275)
38 TIGR00977 LeuA_rel 2-isopropyl 100.0 1.2E-53 2.6E-58 523.6 37.7 343 658-1027 1-365 (526)
39 COG0119 LeuA Isopropylmalate/h 100.0 1.1E-52 2.3E-57 498.0 36.2 337 657-1028 1-358 (409)
40 PRK03739 2-isopropylmalate syn 100.0 2.2E-51 4.8E-56 506.2 37.6 348 648-1026 18-413 (552)
41 TIGR00970 leuA_yeast 2-isoprop 100.0 1.3E-50 2.8E-55 500.6 36.6 346 651-1026 17-416 (564)
42 PRK05692 hydroxymethylglutaryl 100.0 7.6E-47 1.6E-51 433.5 33.5 264 657-946 3-287 (287)
43 PF02436 PYC_OADA: Conserved c 100.0 2.8E-49 6E-54 424.4 9.3 193 990-1234 1-195 (196)
44 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 3.3E-46 7.1E-51 426.1 32.2 255 659-939 1-260 (263)
45 KOG2367|consensus 100.0 8.9E-46 1.9E-50 421.5 32.0 342 650-1027 49-418 (560)
46 PRK14847 hypothetical protein; 100.0 5.9E-45 1.3E-49 417.6 30.5 268 657-955 31-331 (333)
47 PRK08195 4-hyroxy-2-oxovalerat 100.0 1.7E-44 3.8E-49 422.4 32.8 258 657-940 2-265 (337)
48 PLN02746 hydroxymethylglutaryl 100.0 3E-44 6.6E-49 417.1 33.1 268 656-948 44-331 (347)
49 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 3.3E-44 7.2E-49 419.0 33.3 257 657-939 1-263 (333)
50 TIGR01369 CPSaseII_lrg carbamo 100.0 6.1E-43 1.3E-47 464.1 46.6 429 55-531 4-473 (1050)
51 cd07945 DRE_TIM_CMS Leptospira 100.0 1.1E-43 2.4E-48 406.1 32.0 264 662-952 1-280 (280)
52 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 5.1E-44 1.1E-48 409.2 28.6 243 661-938 1-267 (268)
53 PLN02735 carbamoyl-phosphate s 100.0 9E-43 2E-47 460.4 41.1 364 55-438 572-963 (1102)
54 PLN02735 carbamoyl-phosphate s 100.0 3.2E-42 7E-47 455.1 45.0 437 51-530 17-493 (1102)
55 cd07939 DRE_TIM_NifV Streptomy 100.0 2.3E-43 5E-48 401.8 29.4 243 661-939 1-258 (259)
56 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 2.1E-43 4.7E-48 401.9 28.4 253 661-940 1-259 (266)
57 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 4.8E-43 1E-47 400.3 29.5 253 661-938 1-273 (274)
58 cd03174 DRE_TIM_metallolyase D 100.0 1.6E-41 3.4E-46 388.5 30.0 250 662-938 1-264 (265)
59 PF02786 CPSase_L_D2: Carbamoy 100.0 6.1E-42 1.3E-46 376.3 25.1 208 171-378 1-209 (211)
60 cd07948 DRE_TIM_HCS Saccharomy 100.0 4.9E-41 1.1E-45 380.8 31.0 244 659-938 1-261 (262)
61 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 1.4E-40 3E-45 381.0 30.4 255 661-939 1-273 (273)
62 PRK05294 carB carbamoyl phosph 100.0 4.6E-39 9.9E-44 428.9 45.1 436 52-531 2-475 (1066)
63 PRK12815 carB carbamoyl phosph 100.0 2.3E-38 5E-43 420.6 45.6 435 52-531 2-475 (1068)
64 TIGR01142 purT phosphoribosylg 100.0 3.1E-38 6.8E-43 379.9 42.0 379 59-473 1-380 (380)
65 PLN02948 phosphoribosylaminoim 100.0 7.5E-38 1.6E-42 390.3 43.6 380 55-473 20-402 (577)
66 PRK06019 phosphoribosylaminoim 100.0 3.1E-37 6.7E-42 369.6 41.8 363 57-468 2-366 (372)
67 PRK09288 purT phosphoribosylgl 100.0 6.2E-37 1.4E-41 370.5 43.7 382 57-474 12-394 (395)
68 cd07942 DRE_TIM_LeuA Mycobacte 100.0 3.7E-38 8.1E-43 359.4 29.1 252 660-939 3-284 (284)
69 PF00682 HMGL-like: HMGL-like 100.0 7.6E-39 1.6E-43 360.7 21.2 223 667-920 1-237 (237)
70 cd07947 DRE_TIM_Re_CS Clostrid 100.0 1.9E-37 4.2E-42 353.5 30.1 242 659-938 1-278 (279)
71 PRK07206 hypothetical protein; 100.0 1E-35 2.2E-40 362.4 39.8 386 56-467 1-405 (416)
72 TIGR01161 purK phosphoribosyla 100.0 2.7E-35 5.9E-40 350.8 39.8 309 59-401 1-310 (352)
73 PRK13789 phosphoribosylamine-- 100.0 6.1E-35 1.3E-39 353.9 41.3 400 57-481 4-423 (426)
74 TIGR02146 LysS_fung_arch homoc 100.0 2.7E-35 5.9E-40 349.8 35.8 326 661-1025 1-343 (344)
75 TIGR01369 CPSaseII_lrg carbamo 100.0 6E-35 1.3E-39 388.1 42.6 365 56-467 553-930 (1050)
76 PRK00885 phosphoribosylamine-- 100.0 1.1E-34 2.3E-39 353.5 40.8 394 58-481 1-415 (420)
77 PLN02257 phosphoribosylamine-- 100.0 9.9E-35 2.2E-39 352.1 39.9 398 61-481 1-422 (434)
78 PRK02186 argininosuccinate lya 100.0 2.7E-34 5.9E-39 377.4 45.3 380 57-473 2-395 (887)
79 PRK12815 carB carbamoyl phosph 100.0 2.9E-34 6.4E-39 381.5 44.0 365 56-467 554-930 (1068)
80 TIGR00877 purD phosphoribosyla 100.0 3.6E-34 7.9E-39 349.4 40.0 395 58-481 1-419 (423)
81 PRK05294 carB carbamoyl phosph 100.0 3.6E-34 7.7E-39 382.1 42.2 367 55-467 552-930 (1066)
82 COG0458 CarB Carbamoylphosphat 100.0 1E-33 2.3E-38 325.8 36.7 372 59-468 7-388 (400)
83 PRK06395 phosphoribosylamine-- 100.0 3.2E-33 6.9E-38 339.8 42.4 397 56-481 1-419 (435)
84 PRK05784 phosphoribosylamine-- 100.0 1.7E-32 3.7E-37 335.6 44.1 393 58-475 1-435 (486)
85 PRK13790 phosphoribosylamine-- 100.0 1.4E-32 3.1E-37 329.6 34.7 343 115-481 12-373 (379)
86 PRK12767 carbamoyl phosphate s 100.0 8.5E-32 1.8E-36 317.4 33.8 293 57-378 1-298 (326)
87 COG0026 PurK Phosphoribosylami 100.0 4.4E-30 9.6E-35 292.5 38.4 365 57-469 1-367 (375)
88 COG0151 PurD Phosphoribosylami 100.0 1.4E-29 3E-34 292.0 38.5 400 58-482 1-421 (428)
89 COG0027 PurT Formate-dependent 100.0 1.1E-29 2.5E-34 278.0 32.8 378 57-474 12-394 (394)
90 PF15632 ATPgrasp_Ter: ATP-gra 100.0 3.8E-28 8.1E-33 281.0 31.9 292 62-378 3-309 (329)
91 PRK06524 biotin carboxylase-li 100.0 1.6E-28 3.4E-33 294.4 29.8 247 120-378 94-356 (493)
92 PRK14569 D-alanyl-alanine synt 100.0 1.4E-27 3.1E-32 277.6 34.5 273 57-372 3-292 (296)
93 PRK06849 hypothetical protein; 100.0 1.2E-28 2.7E-33 297.6 26.0 280 56-357 3-284 (389)
94 KOG0369|consensus 100.0 8.6E-29 1.9E-33 288.6 23.4 575 607-1389 552-1175(1176)
95 PRK01966 ddl D-alanyl-alanine 100.0 1E-27 2.2E-32 283.4 30.5 297 57-371 3-327 (333)
96 PRK01372 ddl D-alanine--D-alan 100.0 3.3E-27 7.1E-32 275.9 33.6 277 55-371 2-296 (304)
97 COG1038 PycA Pyruvate carboxyl 100.0 2.1E-27 4.6E-32 283.1 29.0 176 1120-1389 972-1148(1149)
98 TIGR01205 D_ala_D_alaTIGR D-al 100.0 1.1E-26 2.5E-31 272.6 31.9 275 68-372 19-312 (315)
99 PRK14572 D-alanyl-alanine synt 100.0 5.2E-26 1.1E-30 270.2 32.2 304 58-371 2-341 (347)
100 PRK14568 vanB D-alanine--D-lac 100.0 4.7E-26 1E-30 270.3 31.8 294 57-370 3-335 (343)
101 KOG2368|consensus 99.9 1.3E-26 2.8E-31 242.5 21.3 264 656-946 16-301 (316)
102 PRK14570 D-alanyl-alanine synt 99.9 1.2E-25 2.5E-30 267.6 30.8 303 57-370 2-341 (364)
103 PF02785 Biotin_carb_C: Biotin 99.9 5.6E-28 1.2E-32 235.8 7.4 107 395-503 1-107 (107)
104 PRK14571 D-alanyl-alanine synt 99.9 1.6E-24 3.5E-29 252.7 32.5 254 69-367 21-287 (299)
105 smart00878 Biotin_carb_C Bioti 99.9 1E-26 2.2E-31 227.5 9.4 107 395-503 1-107 (107)
106 KOG0370|consensus 99.9 1.8E-26 4E-31 277.5 13.4 430 56-530 376-837 (1435)
107 PRK14573 bifunctional D-alanyl 99.9 3.7E-24 8.1E-29 280.2 34.7 299 57-371 451-782 (809)
108 KOG0237|consensus 99.9 4.4E-23 9.5E-28 240.4 34.2 403 57-482 2-425 (788)
109 COG2232 Predicted ATP-dependen 99.9 1.7E-23 3.7E-28 231.5 28.2 350 57-469 11-371 (389)
110 KOG0370|consensus 99.9 6.8E-23 1.5E-27 247.1 24.4 303 57-378 918-1234(1435)
111 TIGR00768 rimK_fam alpha-L-glu 99.9 3.1E-22 6.6E-27 230.3 27.8 266 65-371 9-276 (277)
112 TIGR01235 pyruv_carbox pyruvat 99.9 1.4E-22 3E-27 267.3 25.4 171 1125-1389 973-1143(1143)
113 PRK13278 purP 5-formaminoimida 99.9 1.9E-21 4E-26 228.8 29.2 270 59-352 20-315 (358)
114 PRK10446 ribosomal protein S6 99.9 1.8E-21 3.9E-26 227.2 28.7 277 59-375 2-289 (300)
115 PF13535 ATP-grasp_4: ATP-gras 99.9 1.5E-22 3.4E-27 218.0 18.3 177 168-353 1-183 (184)
116 TIGR02144 LysX_arch Lysine bio 99.9 5.8E-21 1.3E-25 220.6 29.9 263 69-373 12-276 (280)
117 PF00289 CPSase_L_chain: Carba 99.9 7.8E-23 1.7E-27 201.9 10.6 110 56-166 1-110 (110)
118 PRK13277 5-formaminoimidazole- 99.9 4.9E-20 1.1E-24 213.2 26.7 294 59-378 19-349 (366)
119 PRK12999 pyruvate carboxylase; 99.8 5.2E-20 1.1E-24 244.5 26.8 563 606-1389 524-1145(1146)
120 PF02222 ATP-grasp: ATP-grasp 99.8 5.9E-20 1.3E-24 195.6 18.5 167 179-357 1-169 (172)
121 TIGR03103 trio_acet_GNAT GNAT- 99.8 2.2E-20 4.8E-25 233.1 16.3 253 75-352 206-525 (547)
122 PRK14016 cyanophycin synthetas 99.8 1.4E-19 3.1E-24 232.7 18.1 256 89-371 141-470 (727)
123 PF07478 Dala_Dala_lig_C: D-al 99.8 6.1E-19 1.3E-23 193.9 19.4 186 178-371 1-201 (203)
124 COG1181 DdlA D-alanine-D-alani 99.8 6.2E-18 1.3E-22 196.6 28.7 269 69-370 23-311 (317)
125 PF01071 GARS_A: Phosphoribosy 99.8 1.7E-18 3.8E-23 186.1 16.1 174 170-350 1-190 (194)
126 PRK14042 pyruvate carboxylase 99.8 5.7E-16 1.2E-20 192.2 35.6 171 1125-1390 425-595 (596)
127 COG0511 AccB Biotin carboxyl c 99.7 8.4E-18 1.8E-22 173.4 9.3 71 1356-1426 69-139 (140)
128 PF02655 ATP-grasp_3: ATP-gras 99.7 2.5E-17 5.4E-22 175.0 10.9 158 169-352 1-161 (161)
129 PRK09282 pyruvate carboxylase 99.7 1.1E-14 2.4E-19 182.2 35.8 164 1125-1389 426-591 (592)
130 COG0189 RimK Glutathione synth 99.7 7E-16 1.5E-20 180.0 23.2 284 69-372 19-311 (318)
131 COG3919 Predicted ATP-grasp en 99.7 5.3E-16 1.2E-20 169.4 18.0 295 59-375 5-313 (415)
132 PF08443 RimK: RimK-like ATP-g 99.7 4.8E-16 1E-20 169.7 15.3 182 170-371 2-189 (190)
133 PRK06549 acetyl-CoA carboxylas 99.6 4.8E-15 1E-19 149.6 13.6 70 1356-1425 60-129 (130)
134 PRK05641 putative acetyl-CoA c 99.6 5.9E-15 1.3E-19 153.5 14.4 70 1356-1425 83-152 (153)
135 PRK05889 putative acetyl-CoA c 99.6 5.3E-15 1.1E-19 135.3 10.2 69 1358-1426 3-71 (71)
136 PRK12458 glutathione synthetas 99.6 3.4E-13 7.4E-18 159.7 28.1 278 65-372 9-321 (338)
137 COG1821 Predicted ATP-utilizin 99.6 6.8E-14 1.5E-18 151.1 17.3 247 71-376 29-283 (307)
138 COG4770 Acetyl/propionyl-CoA c 99.5 2.6E-14 5.7E-19 168.8 12.9 76 1351-1426 569-644 (645)
139 TIGR02068 cya_phycin_syn cyano 99.5 2.6E-13 5.7E-18 178.3 22.1 240 119-373 161-471 (864)
140 PRK08225 acetyl-CoA carboxylas 99.5 7.7E-14 1.7E-18 127.3 10.1 69 1358-1426 2-70 (70)
141 PRK02471 bifunctional glutamat 99.5 1.1E-12 2.4E-17 168.7 23.0 197 161-370 478-748 (752)
142 TIGR01435 glu_cys_lig_rel glut 99.5 1.1E-12 2.4E-17 166.0 20.5 197 161-370 465-734 (737)
143 TIGR01380 glut_syn glutathione 99.5 7.4E-12 1.6E-16 147.1 26.0 275 68-372 19-308 (312)
144 PRK06748 hypothetical protein; 99.5 2.4E-13 5.2E-18 126.4 10.4 68 1359-1426 6-74 (83)
145 PF00364 Biotin_lipoyl: Biotin 99.5 8.2E-14 1.8E-18 128.5 7.2 67 1359-1425 2-74 (74)
146 PRK05246 glutathione synthetas 99.5 1.3E-11 2.7E-16 145.6 26.8 276 68-373 20-310 (316)
147 PLN02941 inositol-tetrakisphos 99.4 1E-11 2.2E-16 144.9 22.7 178 150-350 87-305 (328)
148 TIGR00531 BCCP acetyl-CoA carb 99.4 6.8E-13 1.5E-17 139.4 10.0 70 1357-1426 80-156 (156)
149 PRK14040 oxaloacetate decarbox 99.4 5.7E-11 1.2E-15 148.9 27.5 157 1125-1388 435-592 (593)
150 PRK07051 hypothetical protein; 99.3 3.5E-12 7.5E-17 119.5 9.4 69 1358-1426 4-79 (80)
151 COG1759 5-formaminoimidazole-4 99.3 1.6E-10 3.4E-15 129.2 23.6 271 59-354 20-320 (361)
152 PLN02983 biotin carboxyl carri 99.3 3.3E-12 7.2E-17 140.4 10.3 72 1355-1426 195-273 (274)
153 KOG0368|consensus 99.3 1E-12 2.2E-17 165.7 6.1 165 1246-1426 577-753 (2196)
154 PRK06302 acetyl-CoA carboxylas 99.3 4.9E-12 1.1E-16 132.9 10.0 71 1356-1426 78-155 (155)
155 KOG0238|consensus 99.3 8E-12 1.7E-16 145.4 12.4 75 1352-1426 596-670 (670)
156 TIGR01108 oadA oxaloacetate de 99.3 6.6E-10 1.4E-14 139.3 29.2 159 1125-1385 424-582 (582)
157 TIGR02291 rimK_rel_E_lig alpha 99.3 1.7E-10 3.7E-15 133.9 19.6 202 160-370 26-290 (317)
158 cd06850 biotinyl_domain The bi 99.2 5.7E-11 1.2E-15 106.7 9.6 67 1359-1425 1-67 (67)
159 cd06663 Biotinyl_lipoyl_domain 99.0 1.3E-09 2.7E-14 100.3 9.4 61 1365-1425 13-73 (73)
160 PLN02226 2-oxoglutarate dehydr 99.0 7.5E-10 1.6E-14 133.7 9.4 67 1360-1426 99-166 (463)
161 PTZ00144 dihydrolipoamide succ 99.0 1.1E-09 2.5E-14 131.4 9.6 67 1360-1426 52-119 (418)
162 PRK14875 acetoin dehydrogenase 99.0 1.3E-09 2.9E-14 130.6 9.7 63 1364-1426 15-77 (371)
163 PRK05704 dihydrolipoamide succ 98.8 9.2E-09 2E-13 124.4 10.0 62 1365-1426 16-77 (407)
164 PRK00696 sucC succinyl-CoA syn 98.8 2.1E-07 4.5E-12 113.0 19.0 109 171-281 4-125 (388)
165 PF14398 ATPgrasp_YheCD: YheC/ 98.8 2.2E-07 4.9E-12 106.6 17.8 185 151-351 4-235 (262)
166 TIGR01016 sucCoAbeta succinyl- 98.7 2.9E-07 6.4E-12 111.7 19.1 173 171-345 4-214 (386)
167 PF14397 ATPgrasp_ST: Sugar-tr 98.7 5E-07 1.1E-11 105.0 19.6 201 161-365 16-273 (285)
168 TIGR01347 sucB 2-oxoglutarate 98.7 3.5E-08 7.7E-13 119.1 9.9 62 1365-1426 14-75 (403)
169 PRK11854 aceF pyruvate dehydro 98.6 7.1E-08 1.5E-12 123.4 9.6 62 1365-1426 14-75 (633)
170 PRK11854 aceF pyruvate dehydro 98.6 6.3E-08 1.4E-12 123.8 8.9 64 1363-1426 216-279 (633)
171 COG0508 AceF Pyruvate/2-oxoglu 98.6 1.2E-07 2.5E-12 114.8 8.7 64 1363-1426 13-77 (404)
172 PLN02528 2-oxoisovalerate dehy 98.6 1.8E-07 3.9E-12 113.8 9.9 66 1361-1426 7-73 (416)
173 TIGR01348 PDHac_trf_long pyruv 98.5 2E-07 4.4E-12 117.1 9.7 67 1360-1426 8-74 (546)
174 TIGR01348 PDHac_trf_long pyruv 98.5 2E-07 4.3E-12 117.2 8.5 62 1365-1426 129-190 (546)
175 TIGR02927 SucB_Actino 2-oxoglu 98.5 2.8E-07 6.1E-12 116.7 9.0 62 1365-1426 149-210 (590)
176 PRK11855 dihydrolipoamide acet 98.4 6E-07 1.3E-11 113.4 8.9 62 1365-1426 132-193 (547)
177 cd06849 lipoyl_domain Lipoyl d 98.4 1.7E-06 3.7E-11 77.8 9.2 64 1362-1425 11-74 (74)
178 PRK11855 dihydrolipoamide acet 98.3 1.5E-06 3.4E-11 109.7 9.2 62 1365-1426 15-76 (547)
179 PRK11856 branched-chain alpha- 98.2 3.6E-06 7.9E-11 103.0 9.5 62 1365-1426 16-77 (411)
180 TIGR01349 PDHac_trf_mito pyruv 98.2 3.3E-06 7.1E-11 103.5 8.9 62 1365-1426 13-75 (435)
181 COG0045 SucC Succinyl-CoA synt 98.2 2.2E-05 4.8E-10 91.8 14.6 166 172-348 5-199 (387)
182 PF13549 ATP-grasp_5: ATP-gras 98.1 1.9E-05 4.1E-10 88.3 12.3 109 171-281 11-130 (222)
183 TIGR02146 LysS_fung_arch homoc 98.1 6.2E-12 1.3E-16 150.0 -42.4 191 821-1017 111-319 (344)
184 PRK11892 pyruvate dehydrogenas 98.1 6E-06 1.3E-10 101.6 8.9 62 1365-1426 16-78 (464)
185 PRK14046 malate--CoA ligase su 98.1 0.0001 2.2E-09 89.6 18.7 108 172-281 5-125 (392)
186 TIGR02927 SucB_Actino 2-oxoglu 98.1 7.2E-06 1.6E-10 104.1 8.8 62 1365-1426 16-77 (590)
187 PLN00124 succinyl-CoA ligase [ 98.0 0.00013 2.9E-09 88.7 18.6 105 171-278 31-158 (422)
188 PLN02744 dihydrolipoyllysine-r 98.0 9.6E-06 2.1E-10 100.6 8.6 60 1366-1425 127-187 (539)
189 PF08442 ATP-grasp_2: ATP-gras 98.0 2.8E-05 6.1E-10 85.6 10.7 165 172-347 4-199 (202)
190 PRK13380 glycine cleavage syst 97.9 9.2E-06 2E-10 84.5 4.5 57 1358-1414 36-93 (144)
191 PRK09783 copper/silver efflux 97.9 4E-05 8.6E-10 93.9 10.4 75 1352-1426 118-241 (409)
192 PF02955 GSH-S_ATP: Prokaryoti 97.9 9.4E-05 2E-09 79.5 11.9 145 186-351 12-164 (173)
193 PRK12330 oxaloacetate decarbox 97.8 0.0014 3E-08 81.2 21.2 32 613-644 3-34 (499)
194 KOG0559|consensus 97.7 1.1E-05 2.4E-10 91.7 1.5 61 1366-1426 87-147 (457)
195 cd06848 GCS_H Glycine cleavage 97.7 5.2E-05 1.1E-09 73.8 6.0 56 1361-1416 24-80 (96)
196 PLN02235 ATP citrate (pro-S)-l 97.7 0.0011 2.3E-08 80.0 17.7 106 172-279 8-131 (423)
197 TIGR00998 8a0101 efflux pump m 97.7 8.6E-05 1.9E-09 88.5 8.2 35 1356-1390 41-75 (334)
198 KOG0557|consensus 97.5 0.00013 2.9E-09 86.6 6.9 63 1363-1425 49-113 (470)
199 PRK10476 multidrug resistance 97.5 0.00017 3.7E-09 86.5 7.8 35 1356-1390 47-81 (346)
200 PRK10559 p-hydroxybenzoic acid 97.5 0.00018 4E-09 84.9 7.8 68 1358-1425 48-185 (310)
201 PF05770 Ins134_P3_kin: Inosit 97.5 0.00045 9.9E-09 80.5 10.4 174 155-350 78-290 (307)
202 TIGR03077 not_gcvH glycine cle 97.5 0.00013 2.9E-09 72.4 5.0 52 1363-1414 27-79 (110)
203 PRK07028 bifunctional hexulose 97.5 0.0052 1.1E-07 76.0 20.1 193 678-918 13-208 (430)
204 TIGR01730 RND_mfp RND family e 97.4 0.00017 3.7E-09 85.1 6.4 70 1357-1426 26-166 (322)
205 PF02844 GARS_N: Phosphoribosy 97.4 0.001 2.2E-08 64.8 10.4 99 58-168 1-99 (100)
206 PF14305 ATPgrasp_TupA: TupA-l 97.4 0.0028 6.1E-08 72.0 15.6 176 165-352 14-221 (239)
207 PRK12581 oxaloacetate decarbox 97.4 0.0028 6.1E-08 77.8 16.3 33 612-644 10-42 (468)
208 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00021 4.5E-09 61.0 4.5 36 1358-1393 3-38 (50)
209 PRK15136 multidrug efflux syst 97.4 0.00031 6.8E-09 85.6 7.5 35 1356-1390 60-94 (390)
210 PRK01202 glycine cleavage syst 97.3 0.00035 7.5E-09 71.5 6.2 66 1361-1426 32-105 (127)
211 PRK03598 putative efflux pump 97.3 0.00035 7.6E-09 83.3 7.0 34 1357-1390 43-76 (331)
212 PRK09578 periplasmic multidrug 97.3 0.00054 1.2E-08 83.5 8.6 71 1356-1426 62-205 (385)
213 PRK05889 putative acetyl-CoA c 97.3 0.001 2.2E-08 61.1 8.2 67 1289-1389 5-71 (71)
214 PRK00624 glycine cleavage syst 97.2 0.00061 1.3E-08 68.2 5.7 48 1363-1410 29-77 (114)
215 KOG0558|consensus 97.2 0.00023 4.9E-09 80.8 2.9 61 1367-1427 80-140 (474)
216 TIGR00423 radical SAM domain p 97.1 0.035 7.6E-07 65.7 21.3 226 676-922 34-298 (309)
217 PF02750 Synapsin_C: Synapsin, 97.1 0.016 3.4E-07 62.6 16.2 172 162-354 2-186 (203)
218 PRK12784 hypothetical protein; 97.1 0.0023 4.9E-08 57.9 8.2 69 1358-1426 6-75 (84)
219 PRK15030 multidrug efflux syst 97.1 0.00089 1.9E-08 81.9 7.8 70 1356-1425 64-206 (397)
220 PRK11578 macrolide transporter 97.1 0.0011 2.5E-08 80.2 8.6 35 1356-1390 60-94 (370)
221 PRK06748 hypothetical protein; 97.1 0.0017 3.7E-08 61.1 7.8 70 1288-1390 6-75 (83)
222 TIGR00527 gcvH glycine cleavag 97.1 0.0005 1.1E-08 70.4 4.4 53 1362-1414 32-85 (127)
223 PRK08225 acetyl-CoA carboxylas 97.1 0.0019 4E-08 59.1 7.5 68 1288-1389 3-70 (70)
224 CHL00200 trpA tryptophan synth 97.1 0.012 2.5E-07 67.9 15.7 184 679-893 27-228 (263)
225 TIGR00262 trpA tryptophan synt 97.0 0.015 3.4E-07 66.8 16.5 184 679-893 22-224 (256)
226 PRK11556 multidrug efflux syst 97.0 0.0011 2.3E-08 81.6 7.5 70 1356-1425 86-228 (415)
227 PRK09859 multidrug efflux syst 97.0 0.0012 2.5E-08 80.5 7.4 69 1357-1425 61-202 (385)
228 PF13533 Biotin_lipoyl_2: Biot 97.0 0.0012 2.6E-08 56.3 5.2 32 1395-1426 3-34 (50)
229 TIGR03699 mena_SCO4550 menaqui 97.0 0.03 6.6E-07 67.1 19.1 220 676-922 70-329 (340)
230 COG0511 AccB Biotin carboxyl c 96.9 0.0019 4.2E-08 67.3 7.0 71 1286-1390 70-140 (140)
231 PF03133 TTL: Tubulin-tyrosine 96.8 0.0043 9.2E-08 72.7 9.8 44 210-262 67-110 (292)
232 TIGR03309 matur_yqeB selenium- 96.8 0.004 8.8E-08 70.0 8.6 65 1356-1426 163-227 (256)
233 PRK07360 FO synthase subunit 2 96.7 0.12 2.6E-06 62.8 21.2 222 676-923 89-357 (371)
234 TIGR03551 F420_cofH 7,8-dideme 96.7 0.1 2.2E-06 62.8 20.0 222 676-923 68-335 (343)
235 PLN02591 tryptophan synthase 96.7 0.053 1.2E-06 62.0 16.6 183 679-893 14-215 (250)
236 cd04726 KGPDC_HPS 3-Keto-L-gul 96.6 0.1 2.2E-06 57.6 18.1 172 678-896 10-186 (202)
237 PRK13125 trpA tryptophan synth 96.6 0.1 2.2E-06 59.8 18.4 185 678-894 15-212 (244)
238 PRK07051 hypothetical protein; 96.5 0.0093 2E-07 56.1 8.0 33 1357-1389 47-79 (80)
239 PF02436 PYC_OADA: Conserved c 96.5 0.00097 2.1E-08 73.0 1.3 50 1121-1171 137-187 (196)
240 PRK05641 putative acetyl-CoA c 96.4 0.046 9.9E-07 57.8 13.0 69 1286-1388 84-152 (153)
241 PRK07094 biotin synthase; Prov 96.4 0.27 5.9E-06 58.6 21.4 190 676-899 68-283 (323)
242 TIGR01843 type_I_hlyD type I s 96.4 0.011 2.4E-07 72.6 9.8 34 1356-1389 42-75 (423)
243 PF00364 Biotin_lipoyl: Biotin 96.4 0.0076 1.7E-07 55.8 6.3 66 1289-1388 3-74 (74)
244 TIGR02971 heterocyst_DevB ABC 96.3 0.0078 1.7E-07 71.7 7.6 33 1358-1390 14-49 (327)
245 PF11379 DUF3182: Protein of u 96.2 0.071 1.5E-06 62.0 14.1 216 124-352 59-298 (355)
246 TIGR03700 mena_SCO4494 putativ 96.2 0.23 5E-06 59.9 19.3 223 675-923 76-341 (351)
247 PF13375 RnfC_N: RnfC Barrel s 96.2 0.013 2.8E-07 57.6 7.0 46 1366-1412 39-84 (101)
248 TIGR03128 RuMP_HxlA 3-hexulose 96.2 0.34 7.4E-06 53.8 19.3 194 678-917 9-203 (206)
249 PF12700 HlyD_2: HlyD family s 96.2 0.0034 7.4E-08 74.3 3.5 34 1356-1390 20-53 (328)
250 PRK06549 acetyl-CoA carboxylas 96.1 0.019 4E-07 59.0 7.9 70 1285-1388 60-129 (130)
251 TIGR01496 DHPS dihydropteroate 96.0 0.2 4.3E-06 57.8 16.6 194 814-1022 16-249 (257)
252 COG0159 TrpA Tryptophan syntha 96.0 0.091 2E-06 60.0 13.6 212 655-919 14-243 (265)
253 PRK08444 hypothetical protein; 96.0 0.38 8.2E-06 58.0 19.4 244 658-922 57-339 (353)
254 PRK13111 trpA tryptophan synth 95.9 0.25 5.4E-06 57.0 16.6 162 679-869 24-205 (258)
255 PRK08445 hypothetical protein; 95.8 0.45 9.8E-06 57.3 19.5 226 674-921 69-333 (348)
256 PF01597 GCV_H: Glycine cleava 95.8 0.014 3.1E-07 59.4 5.7 46 1366-1411 31-77 (122)
257 PLN02983 biotin carboxyl carri 95.7 0.029 6.3E-07 63.2 8.0 76 1280-1389 191-273 (274)
258 TIGR02320 PEP_mutase phosphoen 95.6 0.63 1.4E-05 54.4 18.8 207 696-921 38-263 (285)
259 PRK05927 hypothetical protein; 95.6 0.45 9.7E-06 57.4 17.9 238 665-922 63-335 (350)
260 PRK14041 oxaloacetate decarbox 95.6 0.22 4.7E-06 62.0 15.6 30 615-644 3-32 (467)
261 cd04724 Tryptophan_synthase_al 95.5 0.26 5.7E-06 56.3 15.2 181 679-893 12-212 (242)
262 PF06973 DUF1297: Domain of un 95.5 0.079 1.7E-06 56.7 9.9 99 251-352 21-145 (188)
263 cd00945 Aldolase_Class_I Class 95.5 0.83 1.8E-05 49.8 18.6 173 679-893 11-198 (201)
264 cd06850 biotinyl_domain The bi 95.5 0.06 1.3E-06 48.0 7.9 66 1289-1388 2-67 (67)
265 cd06251 M14_ASTE_ASPA_like_1 A 95.3 0.055 1.2E-06 63.4 9.0 65 1358-1425 220-286 (287)
266 cd06252 M14_ASTE_ASPA_like_2 A 95.3 0.059 1.3E-06 64.0 9.1 65 1358-1425 245-313 (316)
267 COG5016 Pyruvate/oxaloacetate 95.1 0.13 2.8E-06 61.0 10.9 32 612-643 3-34 (472)
268 cd06253 M14_ASTE_ASPA_like_3 A 95.0 0.068 1.5E-06 62.9 8.7 67 1356-1425 228-297 (298)
269 TIGR02994 ectoine_eutE ectoine 94.9 0.077 1.7E-06 63.1 8.7 65 1358-1425 256-324 (325)
270 PRK12331 oxaloacetate decarbox 94.9 0.12 2.5E-06 64.1 10.5 31 614-644 3-33 (448)
271 PF14403 CP_ATPgrasp_2: Circul 94.8 0.15 3.3E-06 62.5 10.9 169 71-274 204-397 (445)
272 TIGR00433 bioB biotin syntheta 94.8 7.6 0.00016 45.6 25.0 212 678-920 62-295 (296)
273 COG3608 Predicted deacylase [G 94.8 0.072 1.6E-06 62.5 7.8 66 1357-1425 256-324 (331)
274 cd00958 DhnA Class I fructose- 94.7 4 8.7E-05 46.3 21.6 206 676-917 16-231 (235)
275 KOG3895|consensus 94.7 0.21 4.5E-06 57.8 10.7 219 127-365 152-386 (488)
276 PF00290 Trp_syntA: Tryptophan 94.5 0.64 1.4E-05 53.5 14.5 195 679-919 22-236 (259)
277 PRK01130 N-acetylmannosamine-6 94.5 2 4.4E-05 48.3 18.4 167 679-894 21-200 (221)
278 COG0509 GcvH Glycine cleavage 94.4 0.052 1.1E-06 55.2 4.8 49 1363-1411 36-85 (131)
279 cd00331 IGPS Indole-3-glycerol 94.2 1.5 3.3E-05 49.1 16.6 170 678-894 28-199 (217)
280 TIGR00531 BCCP acetyl-CoA carb 94.2 0.12 2.5E-06 55.1 7.1 69 1287-1389 81-156 (156)
281 PRK06302 acetyl-CoA carboxylas 94.2 0.12 2.6E-06 55.0 7.1 33 1357-1389 123-155 (155)
282 TIGR03551 F420_cofH 7,8-dideme 94.1 0.78 1.7E-05 55.2 15.0 211 816-1050 69-292 (343)
283 PF06849 DUF1246: Protein of u 94.0 0.12 2.7E-06 51.9 6.4 115 66-189 6-122 (124)
284 PF01487 DHquinase_I: Type I 3 94.0 12 0.00026 42.2 23.4 210 679-917 8-224 (224)
285 cd06250 M14_PaAOTO_like An unc 94.0 0.16 3.5E-06 61.3 8.8 67 1356-1425 288-358 (359)
286 TIGR01303 IMP_DH_rel_1 IMP deh 93.9 0.42 9.1E-06 59.8 12.3 73 821-899 225-297 (475)
287 cd00452 KDPG_aldolase KDPG and 93.9 2.5 5.3E-05 46.5 17.0 158 679-896 14-171 (190)
288 cd06254 M14_ASTE_ASPA_like_4 A 93.8 0.14 3.1E-06 60.0 7.7 64 1356-1422 222-287 (288)
289 cd00959 DeoC 2-deoxyribose-5-p 93.8 4.8 0.0001 44.8 19.4 176 678-895 14-202 (203)
290 PRK15108 biotin synthase; Prov 93.7 16 0.00034 44.3 24.8 213 677-923 75-312 (345)
291 PRK02412 aroD 3-dehydroquinate 93.6 12 0.00026 43.2 22.7 216 679-920 26-250 (253)
292 PRK00507 deoxyribose-phosphate 93.6 6.1 0.00013 44.6 19.6 185 673-896 14-208 (221)
293 PRK09234 fbiC FO synthase; Rev 93.5 2.7 5.8E-05 56.3 19.2 222 675-922 554-821 (843)
294 cd02810 DHOD_DHPD_FMN Dihydroo 93.4 2.6 5.6E-05 49.4 17.2 130 755-900 113-276 (289)
295 PRK06843 inosine 5-monophospha 93.3 0.54 1.2E-05 57.3 11.5 68 822-895 154-221 (404)
296 PF01116 F_bP_aldolase: Fructo 93.2 0.8 1.7E-05 53.6 12.4 132 756-897 86-236 (287)
297 cd04740 DHOD_1B_like Dihydroor 93.2 4.2 9E-05 47.9 18.6 127 755-901 104-265 (296)
298 PRK07998 gatY putative fructos 93.2 1.4 3E-05 51.4 14.1 130 757-897 88-230 (283)
299 PRK09856 fructoselysine 3-epim 93.2 2.7 5.8E-05 48.7 16.7 209 682-927 14-246 (275)
300 PF04131 NanE: Putative N-acet 93.1 0.33 7.1E-06 52.7 8.2 74 823-904 54-127 (192)
301 TIGR00126 deoC deoxyribose-pho 93.1 5.1 0.00011 44.9 17.9 184 672-896 9-204 (211)
302 PRK13307 bifunctional formalde 93.1 4.4 9.5E-05 49.5 18.7 191 678-917 182-375 (391)
303 PRK06552 keto-hydroxyglutarate 93.0 3.2 6.9E-05 46.6 16.3 158 679-895 23-182 (213)
304 TIGR00715 precor6x_red precorr 93.0 0.55 1.2E-05 54.1 10.5 93 58-159 1-96 (256)
305 PTZ00314 inosine-5'-monophosph 93.0 1.8 4E-05 54.6 15.9 126 753-899 178-313 (495)
306 PRK06256 biotin synthase; Vali 93.0 12 0.00027 44.8 22.5 211 678-923 91-324 (336)
307 PRK05301 pyrroloquinoline quin 92.9 3.2 6.9E-05 50.7 17.6 133 676-840 44-189 (378)
308 TIGR01163 rpe ribulose-phospha 92.9 9.6 0.00021 42.2 20.0 176 678-896 8-193 (210)
309 PRK14875 acetoin dehydrogenase 92.8 0.26 5.7E-06 59.2 8.1 65 1294-1392 16-80 (371)
310 TIGR02712 urea_carbox urea car 92.8 0.23 4.9E-06 68.8 8.3 65 1357-1426 1132-1201(1201)
311 PRK05926 hypothetical protein; 92.7 3.1 6.8E-05 50.6 16.9 223 675-921 96-360 (370)
312 cd00739 DHPS DHPS subgroup of 92.7 5.1 0.00011 46.3 17.9 192 816-1021 20-250 (257)
313 TIGR03586 PseI pseudaminic aci 92.7 1.4 3E-05 52.6 13.5 114 759-894 103-220 (327)
314 PLN02226 2-oxoglutarate dehydr 92.5 0.3 6.5E-06 60.3 7.9 63 1294-1390 105-167 (463)
315 COG2513 PrpB PEP phosphonomuta 92.5 2.7 5.8E-05 48.6 14.8 212 687-921 31-257 (289)
316 PTZ00144 dihydrolipoamide succ 92.5 0.31 6.6E-06 59.7 7.9 64 1294-1391 58-121 (418)
317 PTZ00170 D-ribulose-5-phosphat 92.4 6.4 0.00014 44.7 18.0 160 721-917 54-218 (228)
318 PLN02389 biotin synthase 92.4 29 0.00062 42.5 24.6 215 677-923 115-354 (379)
319 PF13437 HlyD_3: HlyD family s 92.4 0.2 4.3E-06 49.3 5.1 34 1359-1392 1-34 (105)
320 TIGR03569 NeuB_NnaB N-acetylne 92.3 1.5 3.2E-05 52.3 13.1 144 718-895 73-222 (329)
321 PF05896 NQRA: Na(+)-transloca 92.3 0.18 3.9E-06 57.3 5.2 52 1360-1412 32-83 (257)
322 TIGR02109 PQQ_syn_pqqE coenzym 92.2 3.8 8.1E-05 49.6 16.8 132 676-839 35-179 (358)
323 PF13380 CoA_binding_2: CoA bi 92.2 0.6 1.3E-05 47.2 8.3 99 58-165 1-112 (116)
324 PRK08057 cobalt-precorrin-6x r 92.1 1.2 2.6E-05 51.1 11.6 94 56-159 1-96 (248)
325 PF14243 DUF4343: Domain of un 92.0 1.6 3.5E-05 45.1 11.4 115 209-350 2-117 (130)
326 COG1566 EmrA Multidrug resista 92.0 0.37 8.1E-06 57.7 7.6 67 1359-1425 55-239 (352)
327 PRK09613 thiH thiamine biosynt 91.9 12 0.00025 47.0 20.8 220 675-923 112-380 (469)
328 PLN00016 RNA-binding protein; 91.9 0.58 1.3E-05 56.9 9.4 150 54-219 49-212 (378)
329 PRK13813 orotidine 5'-phosphat 91.8 5.9 0.00013 44.3 16.6 194 679-917 14-209 (215)
330 cd00210 PTS_IIA_glc PTS_IIA, P 91.7 0.45 9.7E-06 48.6 6.8 65 1356-1426 34-102 (124)
331 PRK09196 fructose-1,6-bisphosp 91.7 2.8 6E-05 50.2 14.3 135 757-897 89-278 (347)
332 COG0826 Collagenase and relate 91.6 2.3 4.9E-05 51.2 13.7 132 759-920 19-160 (347)
333 cd00502 DHQase_I Type I 3-dehy 91.6 23 0.00049 40.1 21.1 179 720-917 44-224 (225)
334 PRK07084 fructose-bisphosphate 91.5 4.3 9.3E-05 48.1 15.4 135 756-896 98-268 (321)
335 PRK09439 PTS system glucose-sp 91.4 0.45 9.7E-06 51.2 6.7 96 1325-1426 21-124 (169)
336 PRK11613 folP dihydropteroate 91.2 8 0.00017 45.3 17.2 184 798-997 16-229 (282)
337 COG2099 CobK Precorrin-6x redu 91.2 0.52 1.1E-05 53.3 7.3 120 57-208 2-128 (257)
338 PRK07535 methyltetrahydrofolat 91.2 9.4 0.0002 44.2 17.8 124 817-952 22-159 (261)
339 PRK05718 keto-hydroxyglutarate 91.1 6.8 0.00015 44.0 16.0 153 678-889 24-176 (212)
340 PRK07535 methyltetrahydrofolat 91.0 12 0.00027 43.3 18.5 182 679-892 23-224 (261)
341 COG2190 NagE Phosphotransferas 91.0 0.9 1.9E-05 48.0 8.2 61 1365-1425 85-153 (156)
342 TIGR01936 nqrA NADH:ubiquinone 90.9 0.23 4.9E-06 61.5 4.5 46 1364-1410 36-81 (447)
343 PRK06801 hypothetical protein; 90.9 2.8 6.1E-05 49.1 13.2 130 757-897 88-234 (286)
344 TIGR00284 dihydropteroate synt 90.9 16 0.00035 46.2 20.5 174 681-897 165-352 (499)
345 cd00947 TBP_aldolase_IIB Tagat 90.8 4.7 0.0001 47.0 14.8 130 757-897 83-227 (276)
346 TIGR01496 DHPS dihydropteroate 90.7 13 0.00029 43.0 18.4 200 661-893 8-239 (257)
347 PRK11556 multidrug efflux syst 90.7 0.6 1.3E-05 57.7 7.9 59 1367-1426 61-119 (415)
348 TIGR01769 GGGP geranylgeranylg 90.6 8.3 0.00018 43.0 15.8 176 681-893 11-202 (205)
349 PRK09240 thiH thiamine biosynt 90.5 32 0.0007 42.0 22.4 212 676-923 102-359 (371)
350 cd06663 Biotinyl_lipoyl_domain 90.4 1.1 2.4E-05 41.0 7.5 32 1357-1388 42-73 (73)
351 TIGR01859 fruc_bis_ald_ fructo 90.4 4.5 9.8E-05 47.4 14.4 130 757-897 88-231 (282)
352 PRK07315 fructose-bisphosphate 90.4 4.5 9.8E-05 47.6 14.3 131 757-898 90-234 (293)
353 PRK09439 PTS system glucose-sp 90.3 1.9 4.2E-05 46.4 10.3 63 1363-1426 98-168 (169)
354 PRK07094 biotin synthase; Prov 90.3 11 0.00023 45.0 17.8 177 817-1031 70-250 (323)
355 TIGR02319 CPEP_Pphonmut carbox 90.2 9.3 0.0002 45.0 16.6 156 745-921 86-256 (294)
356 TIGR01858 tag_bisphos_ald clas 90.1 4.9 0.00011 47.0 14.2 130 757-897 86-231 (282)
357 PF02571 CbiJ: Precorrin-6x re 90.1 2.4 5.3E-05 48.7 11.6 94 58-159 1-97 (249)
358 TIGR00736 nifR3_rel_arch TIM-b 90.1 13 0.00028 42.3 17.2 121 764-901 90-225 (231)
359 PRK00278 trpC indole-3-glycero 90.0 13 0.00029 43.0 17.7 166 680-893 69-237 (260)
360 KOG3111|consensus 90.0 5.1 0.00011 43.5 12.8 135 756-918 77-215 (224)
361 TIGR01182 eda Entner-Doudoroff 90.0 12 0.00027 41.7 16.5 157 678-893 17-173 (204)
362 cd00959 DeoC 2-deoxyribose-5-p 89.9 16 0.00036 40.5 17.8 146 753-917 17-169 (203)
363 PF00529 HlyD: HlyD family sec 89.9 0.22 4.7E-06 58.4 3.1 32 1359-1390 3-34 (305)
364 PRK13399 fructose-1,6-bisphosp 89.8 5.6 0.00012 47.7 14.6 134 757-896 89-277 (347)
365 cd04724 Tryptophan_synthase_al 89.8 14 0.00031 42.3 17.5 145 755-919 16-185 (242)
366 COG2190 NagE Phosphotransferas 89.8 0.74 1.6E-05 48.6 6.4 98 1324-1426 5-109 (156)
367 TIGR02317 prpB methylisocitrat 89.7 9.5 0.00021 44.7 16.2 200 695-921 32-252 (285)
368 PRK07226 fructose-bisphosphate 89.7 18 0.0004 42.0 18.6 202 679-918 37-249 (267)
369 cd04729 NanE N-acetylmannosami 89.6 13 0.00028 41.8 16.8 171 679-895 25-205 (219)
370 PRK06806 fructose-bisphosphate 89.6 7.8 0.00017 45.4 15.4 133 757-898 88-232 (281)
371 KOG2799|consensus 89.5 1.1 2.5E-05 52.4 8.2 68 171-240 26-105 (434)
372 TIGR00284 dihydropteroate synt 89.5 4.1 8.8E-05 51.3 13.7 74 819-899 164-237 (499)
373 TIGR03470 HpnH hopanoid biosyn 89.4 20 0.00042 42.9 19.0 150 677-861 58-228 (318)
374 PRK05352 Na(+)-translocating N 89.3 0.33 7.1E-06 60.2 4.1 44 1365-1409 38-81 (448)
375 TIGR00343 pyridoxal 5'-phospha 89.3 2.8 6.1E-05 48.4 11.1 70 823-906 79-148 (287)
376 PRK08185 hypothetical protein; 89.3 9.3 0.0002 44.7 15.6 130 757-897 82-229 (283)
377 PRK11578 macrolide transporter 89.2 0.87 1.9E-05 55.4 7.6 59 1367-1426 35-93 (370)
378 cd00429 RPE Ribulose-5-phospha 89.1 36 0.00078 37.5 19.9 174 678-893 9-191 (211)
379 PRK07259 dihydroorotate dehydr 89.0 23 0.00049 41.9 19.1 128 755-901 106-268 (301)
380 PRK05704 dihydrolipoamide succ 88.9 1 2.3E-05 55.3 8.0 65 1294-1392 16-80 (407)
381 cd04727 pdxS PdxS is a subunit 88.9 1.4 2.9E-05 50.9 8.3 73 819-906 74-146 (283)
382 cd06255 M14_ASTE_ASPA_like_5 A 88.9 1.1 2.3E-05 52.8 7.8 51 1357-1408 231-283 (293)
383 cd04722 TIM_phosphate_binding 88.9 19 0.0004 38.6 17.1 129 755-900 14-147 (200)
384 cd00019 AP2Ec AP endonuclease 88.8 22 0.00048 41.3 18.6 215 678-927 10-257 (279)
385 PRK12737 gatY tagatose-bisphos 88.7 8.4 0.00018 45.1 14.8 130 757-897 88-233 (284)
386 TIGR00262 trpA tryptophan synt 88.7 16 0.00035 42.3 17.0 145 756-919 27-196 (256)
387 COG1748 LYS9 Saccharopine dehy 88.6 1.5 3.3E-05 53.2 8.9 119 57-190 1-123 (389)
388 cd02940 DHPD_FMN Dihydropyrimi 88.6 18 0.00038 42.9 17.7 135 755-906 115-291 (299)
389 TIGR03794 NHPM_micro_HlyD NHPM 88.5 0.45 9.7E-06 58.9 4.5 35 1356-1390 57-91 (421)
390 PRK08444 hypothetical protein; 88.5 14 0.00031 44.7 17.0 197 816-1052 79-299 (353)
391 PRK11320 prpB 2-methylisocitra 88.4 16 0.00034 43.1 16.8 208 688-921 31-257 (292)
392 PRK13397 3-deoxy-7-phosphohept 88.4 16 0.00035 41.9 16.4 186 678-899 26-224 (250)
393 TIGR00998 8a0101 efflux pump m 88.4 0.52 1.1E-05 56.2 4.9 33 1394-1426 42-74 (334)
394 PRK06245 cofG FO synthase subu 88.3 47 0.001 39.9 21.4 219 677-922 40-300 (336)
395 PRK01060 endonuclease IV; Prov 88.3 37 0.0008 39.4 20.1 208 681-922 12-252 (281)
396 cd00423 Pterin_binding Pterin 88.2 13 0.00028 43.1 15.9 159 817-994 21-214 (258)
397 PRK13361 molybdenum cofactor b 88.2 16 0.00034 43.8 17.2 132 677-838 44-188 (329)
398 COG0508 AceF Pyruvate/2-oxoglu 88.2 1.1 2.3E-05 55.2 7.4 64 1294-1391 16-79 (404)
399 PRK15452 putative protease; Pr 88.1 7.1 0.00015 48.6 14.5 128 759-916 16-153 (443)
400 PRK08508 biotin synthase; Prov 88.1 61 0.0013 38.0 23.6 208 678-923 40-274 (279)
401 cd00945 Aldolase_Class_I Class 87.9 21 0.00045 38.7 16.8 144 755-916 15-166 (201)
402 PRK09140 2-dehydro-3-deoxy-6-p 87.9 9.5 0.00021 42.6 14.1 156 679-894 20-177 (206)
403 cd01299 Met_dep_hydrolase_A Me 87.9 6.8 0.00015 46.8 14.0 142 756-921 45-216 (342)
404 PLN02657 3,8-divinyl protochlo 87.8 4.4 9.6E-05 49.7 12.5 77 55-138 58-144 (390)
405 PRK11858 aksA trans-homoaconit 87.8 4.3 9.4E-05 49.6 12.3 43 750-792 142-186 (378)
406 PRK11613 folP dihydropteroate 87.8 50 0.0011 38.8 20.3 173 660-867 22-214 (282)
407 PRK09578 periplasmic multidrug 87.7 1 2.2E-05 55.1 6.9 58 1368-1426 38-95 (385)
408 PRK05567 inosine 5'-monophosph 87.7 2.6 5.6E-05 53.3 10.6 69 823-897 230-298 (486)
409 TIGR03822 AblA_like_2 lysine-2 87.7 21 0.00046 42.7 17.8 165 677-864 118-296 (321)
410 TIGR02351 thiH thiazole biosyn 87.6 58 0.0013 39.7 21.8 214 676-923 101-358 (366)
411 TIGR03699 mena_SCO4550 menaqui 87.6 17 0.00037 43.7 17.1 206 816-1050 71-289 (340)
412 PRK04180 pyridoxal biosynthesi 87.5 2.3 5E-05 49.3 8.9 69 816-896 80-148 (293)
413 PF09891 DUF2118: Uncharacteri 87.5 0.62 1.3E-05 48.9 4.1 50 1363-1412 86-136 (150)
414 PF03102 NeuB: NeuB family; I 87.5 4.6 9.9E-05 46.2 11.4 144 718-894 53-199 (241)
415 PRK05718 keto-hydroxyglutarate 87.4 5.7 0.00012 44.6 11.9 68 817-893 24-91 (212)
416 cd07944 DRE_TIM_HOA_like 4-hyd 87.4 3.7 8.1E-05 47.7 10.9 43 750-792 135-179 (266)
417 PRK09859 multidrug efflux syst 87.4 1.1 2.3E-05 54.9 6.8 58 1368-1426 36-93 (385)
418 TIGR01347 sucB 2-oxoglutarate 87.3 1.6 3.5E-05 53.6 8.2 64 1294-1391 14-77 (403)
419 cd00423 Pterin_binding Pterin 87.3 18 0.0004 41.7 16.5 169 665-867 13-202 (258)
420 CHL00194 ycf39 Ycf39; Provisio 87.3 3.5 7.6E-05 48.9 10.9 88 59-156 2-102 (317)
421 COG3010 NanE Putative N-acetyl 87.1 19 0.00042 39.7 15.0 156 742-920 22-180 (229)
422 PTZ00170 D-ribulose-5-phosphat 86.9 2.2 4.7E-05 48.4 8.5 103 817-927 16-121 (228)
423 PRK13753 dihydropteroate synth 86.9 13 0.00028 43.4 14.8 185 798-997 3-220 (279)
424 TIGR02668 moaA_archaeal probab 86.8 20 0.00042 42.3 16.8 129 677-836 39-180 (302)
425 PRK09195 gatY tagatose-bisphos 86.8 11 0.00024 44.1 14.3 131 756-897 87-233 (284)
426 PRK12595 bifunctional 3-deoxy- 86.8 21 0.00045 43.4 17.0 210 679-940 130-353 (360)
427 cd04740 DHOD_1B_like Dihydroor 86.7 6.4 0.00014 46.3 12.6 77 817-895 99-185 (296)
428 PF00358 PTS_EIIA_1: phosphoen 86.6 0.56 1.2E-05 48.5 3.1 65 1359-1426 4-106 (132)
429 cd00739 DHPS DHPS subgroup of 86.4 33 0.00071 39.8 17.8 201 661-895 9-243 (257)
430 TIGR03128 RuMP_HxlA 3-hexulose 86.4 2.6 5.6E-05 46.7 8.6 100 816-927 8-109 (206)
431 COG0269 SgbH 3-hexulose-6-phos 86.4 17 0.00037 40.6 14.5 173 677-893 12-189 (217)
432 PLN02819 lysine-ketoglutarate 86.3 3 6.6E-05 56.7 10.5 169 55-237 567-763 (1042)
433 TIGR01995 PTS-II-ABC-beta PTS 86.2 2 4.4E-05 55.6 8.6 63 1363-1425 540-609 (610)
434 cd06557 KPHMT-like Ketopantoat 86.2 6.7 0.00014 45.2 11.9 160 685-866 23-195 (254)
435 PRK10476 multidrug resistance 86.1 0.83 1.8E-05 55.0 4.8 33 1394-1426 48-80 (346)
436 PRK07709 fructose-bisphosphate 86.1 17 0.00037 42.7 15.2 130 757-897 91-234 (285)
437 PRK09234 fbiC FO synthase; Rev 86.1 16 0.00035 49.1 16.9 78 816-895 556-644 (843)
438 TIGR03234 OH-pyruv-isom hydrox 86.1 38 0.00082 38.7 18.2 199 682-927 15-238 (254)
439 TIGR03550 F420_cofG 7,8-dideme 86.0 77 0.0017 37.9 21.3 221 675-923 32-297 (322)
440 TIGR00222 panB 3-methyl-2-oxob 85.8 20 0.00042 41.6 15.3 161 683-866 24-197 (263)
441 PRK15136 multidrug efflux syst 85.7 0.91 2E-05 55.7 5.0 33 1394-1426 61-93 (390)
442 TIGR01521 FruBisAldo_II_B fruc 85.7 14 0.00031 44.3 14.5 195 678-896 24-275 (347)
443 PRK00112 tgt queuine tRNA-ribo 85.7 18 0.00039 44.0 15.8 87 816-907 191-279 (366)
444 cd00377 ICL_PEPM Members of th 85.6 23 0.00049 40.7 15.9 190 686-897 21-227 (243)
445 TIGR03234 OH-pyruv-isom hydrox 85.6 13 0.00028 42.5 14.1 113 755-874 16-146 (254)
446 PRK07259 dihydroorotate dehydr 85.5 16 0.00035 43.1 15.2 77 817-895 101-188 (301)
447 COG2896 MoaA Molybdenum cofact 85.5 54 0.0012 39.2 19.0 162 677-868 42-222 (322)
448 cd02940 DHPD_FMN Dihydropyrimi 85.5 7 0.00015 46.2 12.1 77 817-894 110-198 (299)
449 TIGR02666 moaA molybdenum cofa 85.4 27 0.00058 41.9 17.2 157 676-863 41-219 (334)
450 PF01645 Glu_synthase: Conserv 85.4 3.4 7.3E-05 50.0 9.3 75 832-909 171-245 (368)
451 PRK05692 hydroxymethylglutaryl 85.3 5.7 0.00012 46.7 11.0 42 751-792 153-196 (287)
452 PRK13753 dihydropteroate synth 85.2 37 0.0008 39.7 17.3 202 661-893 10-245 (279)
453 PF01702 TGT: Queuine tRNA-rib 85.2 20 0.00044 40.8 15.2 79 817-899 65-144 (238)
454 KOG2157|consensus 85.2 3.3 7.1E-05 51.8 9.3 53 208-262 199-252 (497)
455 COG2100 Predicted Fe-S oxidore 85.2 59 0.0013 38.4 18.3 189 817-1034 141-334 (414)
456 PRK09989 hypothetical protein; 85.2 59 0.0013 37.3 19.2 198 682-927 16-239 (258)
457 COG1064 AdhP Zn-dependent alco 85.1 4.2 9.2E-05 48.6 9.9 159 55-242 165-326 (339)
458 PLN02274 inosine-5'-monophosph 85.1 22 0.00047 45.3 16.7 124 754-897 183-318 (505)
459 cd06556 ICL_KPHMT Members of t 84.9 14 0.0003 42.3 13.6 120 759-895 25-175 (240)
460 PRK13396 3-deoxy-7-phosphohept 84.9 29 0.00062 41.9 16.6 183 678-897 112-309 (352)
461 TIGR03849 arch_ComA phosphosul 84.7 6.9 0.00015 44.4 10.8 100 752-857 70-182 (237)
462 PRK08508 biotin synthase; Prov 84.7 34 0.00074 40.0 17.1 190 817-1044 40-235 (279)
463 PLN02951 Molybderin biosynthes 84.6 46 0.00099 40.7 18.8 157 677-863 89-264 (373)
464 TIGR03700 mena_SCO4494 putativ 84.6 38 0.00081 41.1 18.0 79 816-894 78-165 (351)
465 PRK10559 p-hydroxybenzoic acid 84.6 1.1 2.5E-05 53.1 4.9 32 1395-1426 48-79 (310)
466 TIGR01949 AroFGH_arch predicte 84.6 45 0.00097 38.5 17.9 216 659-918 20-245 (258)
467 PRK12738 kbaY tagatose-bisphos 84.6 20 0.00043 42.1 14.9 130 756-896 87-232 (286)
468 cd04730 NPD_like 2-Nitropropan 84.6 15 0.00032 41.5 13.8 134 755-919 69-207 (236)
469 TIGR01000 bacteriocin_acc bact 84.5 1.7 3.7E-05 54.5 6.7 33 1358-1390 60-92 (457)
470 cd03315 MLE_like Muconate lact 84.5 25 0.00054 40.7 15.8 164 680-883 86-250 (265)
471 cd03319 L-Ala-DL-Glu_epimerase 84.5 27 0.00059 41.4 16.6 165 679-883 134-298 (316)
472 PRK15030 multidrug efflux syst 84.4 1.7 3.7E-05 53.4 6.6 55 1371-1426 43-97 (397)
473 PRK10255 PTS system N-acetyl g 84.4 2 4.3E-05 55.6 7.2 73 1351-1426 492-602 (648)
474 PRK09997 hydroxypyruvate isome 84.4 53 0.0011 37.7 18.4 201 678-922 12-234 (258)
475 PF06898 YqfD: Putative stage 84.3 2.9 6.3E-05 51.2 8.4 75 1327-1406 162-245 (385)
476 PRK08610 fructose-bisphosphate 84.3 19 0.00041 42.3 14.5 131 756-897 90-234 (286)
477 PRK09824 PTS system beta-gluco 84.2 3 6.4E-05 54.0 8.7 63 1363-1425 556-625 (627)
478 TIGR01945 rnfC electron transp 84.2 0.88 1.9E-05 56.6 3.9 43 1366-1409 40-82 (435)
479 TIGR02660 nifV_homocitr homoci 84.2 59 0.0013 39.7 19.4 246 750-1056 20-288 (365)
480 COG1060 ThiH Thiamine biosynth 84.1 66 0.0014 39.3 19.5 232 675-923 87-353 (370)
481 COG1726 NqrA Na+-transporting 84.1 1 2.2E-05 52.6 4.0 51 1360-1412 32-83 (447)
482 PLN02428 lipoic acid synthase 84.0 30 0.00064 41.8 16.3 138 676-840 128-282 (349)
483 KOG2156|consensus 83.9 3.7 8.1E-05 50.3 8.6 65 184-262 280-345 (662)
484 TIGR00542 hxl6Piso_put hexulos 83.8 77 0.0017 36.8 19.7 203 683-922 18-242 (279)
485 COG0274 DeoC Deoxyribose-phosp 83.8 39 0.00084 38.1 15.8 156 753-926 24-187 (228)
486 TIGR01304 IMP_DH_rel_2 IMP deh 83.8 16 0.00034 44.5 14.1 105 757-894 103-214 (369)
487 PRK13209 L-xylulose 5-phosphat 83.7 93 0.002 36.1 20.5 223 656-927 7-252 (283)
488 PF04952 AstE_AspA: Succinylgl 83.7 2 4.3E-05 50.4 6.4 67 1356-1425 219-289 (292)
489 PLN02433 uroporphyrinogen deca 83.6 4.9 0.00011 48.5 9.8 86 820-917 179-273 (345)
490 PRK12738 kbaY tagatose-bisphos 83.5 9.4 0.0002 44.8 11.7 99 781-897 5-107 (286)
491 PRK03598 putative efflux pump 83.5 1.3 2.8E-05 53.0 4.8 33 1394-1426 43-75 (331)
492 PF01081 Aldolase: KDPG and KH 83.5 12 0.00026 41.5 11.9 157 678-893 17-173 (196)
493 PRK00915 2-isopropylmalate syn 83.5 46 0.00099 42.5 18.7 137 741-894 15-167 (513)
494 PLN02334 ribulose-phosphate 3- 83.5 86 0.0019 35.5 20.8 190 682-917 21-219 (229)
495 TIGR01000 bacteriocin_acc bact 83.4 1 2.3E-05 56.3 4.1 51 1366-1426 41-91 (457)
496 cd00381 IMPDH IMPDH: The catal 83.4 9.4 0.0002 45.7 11.9 70 822-897 95-164 (325)
497 PRK04165 acetyl-CoA decarbonyl 83.4 22 0.00048 44.3 15.3 120 817-954 102-233 (450)
498 PRK00164 moaA molybdenum cofac 83.2 39 0.00084 40.4 17.2 132 676-836 47-190 (331)
499 TIGR00423 radical SAM domain p 83.1 76 0.0016 37.7 19.4 244 816-1096 35-294 (309)
500 PRK05835 fructose-bisphosphate 82.9 12 0.00025 44.3 12.1 103 781-900 4-110 (307)
No 1
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2.8e-294 Score=2539.58 Aligned_cols=1136 Identities=50% Similarity=0.833 Sum_probs=1104.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++++||||+||||||+|++|+|.|+|++||+||+.+|+.|.|+.+|||+|.|+....|+++|+++++||++|+++++|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||||||++||++|.++||.|+||+++.++.++||..+|.++.++|||+.|++..++.+.+++++|++++|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
++.||||||||+|+++++|.++++++++|++++||++++|||+||++++|||||+++|.+||++||+|||||+||||||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
+|.+|++.|++++|++||+.|.++++.+||.|++|+||++|.+|+|||||||||+|+||++||++||||+|++||++|.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--cccccc-cCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLT--ELGLCQ-EKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~--~l~l~q-~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
..|+ +++++| ++|..+|+||||||++|||.++|.|++|+|+.|++++|.|||+|+++.+.|.+|+|||||||.|+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 9998 788875 5599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
||.|+++|++||.|+|.||+|+||+|||+||+++++||+|++| +|+|+|||++|+||++.+.+ ||++|+|+||+|++|
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g-~y~T~FId~tPeLf~~~~~~-Dr~tK~L~yl~dvtV 482 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSG-RYTTSFIDTTPELFQFPKSQ-DRGTKLLTYLADVTV 482 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccC-cceeeeccCCHHHhcccccc-chhHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999999 99999999999999999987 999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeec
Q psy15244 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRK 611 (1427)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (1427)
||++.... .++|.+..|..|.+. ++.+++.||||+|+++||
T Consensus 483 Ng~P~~~~-r~kp~~~~~~~~~~~-----------------------------~~~~~~~Gtkq~Ld~~GP--------- 523 (1149)
T COG1038 483 NGFPGLKS-RPKPAYDDAKLPVIN-----------------------------VSKPPPRGTKQILDELGP--------- 523 (1149)
T ss_pred cCCCccCC-CCCcccccccCCccc-----------------------------ccCCCCccHHHHHHhhCh---------
Confidence 99765444 447777777766432 234566999999999999
Q ss_pred cceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHH
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVA 691 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~ 691 (1427)
++|++|||+++.+.+||||||||||||+|||+||.|+.+||+.++
T Consensus 524 -----------------------------------~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a 568 (1149)
T COG1038 524 -----------------------------------EGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATA 568 (1149)
T ss_pred -----------------------------------HHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHH
Confidence 699999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEE
Q psy15244 692 NRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771 (1427)
Q Consensus 692 ~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~r 771 (1427)
+++++++|+||||||||||+||||.||||+||+.||+.+||++||||+||+|.|||++|||||+++||++|+++|||+||
T Consensus 569 ~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFR 648 (1149)
T COG1038 569 RALPQLFSLEMWGGATFDVAMRFLKEDPWERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFR 648 (1149)
T ss_pred HhhhhhhchhhhCCchHHHHHHHhccCHHHHHHHHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHH
Q psy15244 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851 (1427)
Q Consensus 772 if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~ 851 (1427)
|||+|||+++|+.+|+++++.|+ .+|++||||||+++|.+.+|+++||+++|++++++|+|+|.||||+|+|+|.++
T Consensus 649 iFDsLNwv~~M~vaidAV~e~gk---v~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA 725 (1149)
T COG1038 649 IFDSLNWVEQMRVAIDAVREAGK---VAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAA 725 (1149)
T ss_pred eehhhcchhhhhhHHHHHHhcCC---eEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHH
Q psy15244 852 KLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVC 931 (1427)
Q Consensus 852 ~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~ 931 (1427)
+.||++||+++ ++|||+|+|||.|.++|++++|++||||+||+++++|+|.||||++.+++++|.+..+++++|+
T Consensus 726 ~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~al~~~~r~~~ld~---- 800 (1149)
T COG1038 726 YRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGTERDTGLDI---- 800 (1149)
T ss_pred HHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHHHhcCCCCCCCCCH----
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCC
Q psy15244 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~g 1011 (1427)
..+..++.||+.+|.+|.||+ ++++|++++||.|+|||||||||++|++++|
T Consensus 801 ---------------------------~~~~~i~~YWe~vR~~Ya~FE-s~lkgp~~eVY~HEmPGGQ~tNLk~QA~slG 852 (1149)
T COG1038 801 ---------------------------EAVRELSFYWEAVRKLYAPFE-SGLKGPATEVYLHEMPGGQLTNLKQQARSLG 852 (1149)
T ss_pred ---------------------------HHHHHHHHHHHHHHHhhhhhh-cCCCCCCcceeeeecCCcccccHHHHHHhcc
Confidence 778889999999999999999 9999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHh
Q psy15244 1012 L--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKK 1089 (1427)
Q Consensus 1012 l--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~ 1089 (1427)
| ||+||+++|++||++||||+|||||||||||||+|||+|+||.+|+++++.+++||+||++||+|.+||||||||++
T Consensus 853 Lg~Rw~evk~~Y~~vN~mfGdivKVTPSSKVVGDmAl~MV~n~Lt~~dv~~~~~~l~fPdSVv~ff~G~lGqP~gGfPe~ 932 (1149)
T COG1038 853 LGDRWEEVKEAYREVNRMFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFPDSVVSFFRGELGQPPGGFPEP 932 (1149)
T ss_pred chhhHHHHHHHHHHHHHHhCCceEecccchhHHHHHHHHHhcCCCHHHHhcccccCCCcHHHHHHhhcccCCCCCCCCHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcc
Q psy15244 1090 LQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIM 1169 (1427)
Q Consensus 1090 ~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~ 1169 (1427)
||+++|||++++|+|||.+ ++|.||++. ++ ++.+++| .+.+
T Consensus 933 Lqk~vLkg~~p~t~Rpg~~-----------l~~~d~~a~-----r~---~l~~~~~--------------------~~~~ 973 (1149)
T COG1038 933 LQKKVLKGREPLTDRPGEL-----------LEPADFEAI-----RK---ELEEKLG--------------------REVS 973 (1149)
T ss_pred HHHHHhcCCCccccCcccc-----------CCccchHHH-----HH---HHHHHhC--------------------CCch
Confidence 9999999999999999999 999999988 88 8888988 4688
Q ss_pred ccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCccee
Q psy15244 1170 ACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERT 1249 (1427)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~ 1249 (1427)
++| ++||+|||+||++|.+++++|||++.|||+.||+||++|+++.+++++||++.|+
T Consensus 974 d~d-------~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~v~ie~GktLii~--------------- 1031 (1149)
T COG1038 974 DQD-------VASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIEVEIEKGKTLIIK--------------- 1031 (1149)
T ss_pred hHH-------HHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEEEEecCCcEEEEE---------------
Confidence 999 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEE
Q psy15244 1250 VFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFF 1329 (1427)
Q Consensus 1250 ~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~ 1329 (1427)
+.++++++++ |+|+++|
T Consensus 1032 --------------------------------------------------------------l~aige~d~~-G~r~v~f 1048 (1149)
T COG1038 1032 --------------------------------------------------------------LQAIGEPDEK-GMRTVYF 1048 (1149)
T ss_pred --------------------------------------------------------------ecccCCCCcC-CcEEEEE
Confidence 6778888888 9999999
Q ss_pred EECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEE
Q psy15244 1330 LYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVK 1406 (1427)
Q Consensus 1330 elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~ 1406 (1427)
++|||+|.| |.+.......++||+++|++||+|||||+|++|.|++||.|++||+|+++||||||+.|.||.+|+|+
T Consensus 1049 elNGq~R~i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~ 1128 (1149)
T COG1038 1049 ELNGQPREIKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVK 1128 (1149)
T ss_pred EeCCceeeeeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEe
Confidence 999999988 77777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+++|+.||+|+.||+|++++
T Consensus 1129 ~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1129 EVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred EEEecCCCccccCceEEEcc
Confidence 99999999999999999875
No 2
>KOG0369|consensus
Probab=100.00 E-value=9.4e-278 Score=2350.34 Aligned_cols=1140 Identities=54% Similarity=0.933 Sum_probs=1098.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++||||+|||||++|++|+|.|+|+++|+||+..|+.+.|+.+|||+|.|+.+.+|+.+|+.+++|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
|||||||+.+||++|.++|+.|+|||+++++.++||..+|.++.++|||+.||+.+++++.+|+.+|++++|+|+|+|++
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
+||||||||+|++.++++++|+++.+|+.++||++.++||+||+.++||+||+++|++||++|++|||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
++|++.|++++|++|...|.++++.+||.+++|+||++|..|++||||||||+|+||++||.+||+||+++||++|.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCH
Q psy15244 377 LTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATY 456 (1427)
Q Consensus 377 l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~ 456 (1427)
|++++++|+.|..+|+|||||+++|||.++|.|++|+|+.|++.+|.|||+|+.+++.|+.|+|+|||++.|++++|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhhcCCCC
Q psy15244 457 KSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536 (1427)
Q Consensus 457 ~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1427)
+-+.+||.|+|.||+||||+||||||.++|.||.|+.| .++|.|||+||+||++.+.+ +|+||||+||+++.||||++
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g-~~~T~FIDe~PeLFq~~psq-NRAQKLL~Ylg~v~VNGpst 510 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEG-TVDTTFIDETPELFQLKPSQ-NRAQKLLHYLGDVAVNGPST 510 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeee-eeeeEEecCChHHhccccch-hHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999 99999999999999999988 99999999999999999999
Q ss_pred CCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeeccceeE
Q psy15244 537 PLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVL 616 (1427)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1427)
+++++.+|....|++|.++.. ..+|.|||++|.+.||
T Consensus 511 p~~~~l~p~~~~p~vP~~~~~-----------------------------~~pp~G~R~vLl~~GP-------------- 547 (1176)
T KOG0369|consen 511 PGQTGLPPLKSSPVVPHLPDG-----------------------------TGPPKGWRDVLLEEGP-------------- 547 (1176)
T ss_pred CCcCCCCcccCCCCCCcccCC-----------------------------CCCCccHHHHHHhhCH--------------
Confidence 999999999999999977642 1367999999999999
Q ss_pred eecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCC
Q psy15244 617 LTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNN 696 (1427)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G 696 (1427)
++|++.+|++++..|+||||||+|||+++||+||.|+.+|+++.++.++|
T Consensus 548 ------------------------------~~FAk~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~ 597 (1176)
T KOG0369|consen 548 ------------------------------EEFAKAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAG 597 (1176)
T ss_pred ------------------------------HHHHHHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhh
Confidence 58888888888888889999999999999999999999999999999999
Q ss_pred ccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccC
Q psy15244 697 LYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776 (1427)
Q Consensus 697 ~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~ 776 (1427)
++|+|+|||||||++||||+||||+||++||+.+||++||||+||+|+|||++||||++.+|++.|+++|+|+||+||++
T Consensus 598 lfslE~WGGATFDVamRFLhEcPWeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsL 677 (1176)
T KOG0369|consen 598 LFSLENWGGATFDVAMRFLHECPWERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSL 677 (1176)
T ss_pred hhhhhhcCCchhhHHHHHHhcChHHHHHHHHHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHH
Q psy15244 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIG 856 (1427)
Q Consensus 777 nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~ 856 (1427)
|++.||...+++++++|. .|+++||||||+++|.+++|+++||++++++++++|.|+++||||+|+|+|.++.-||.
T Consensus 678 N~lpnl~lGmeAagkAGG---VVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~ 754 (1176)
T KOG0369|consen 678 NYLPNLLLGMEAAGKAGG---VVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIG 754 (1176)
T ss_pred hhhhhhhhhHhhhhccCC---eEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy15244 857 SFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSY 936 (1427)
Q Consensus 857 ~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~ 936 (1427)
+||+++|++|||+|+||+.|.|+|.+++|++||||+||+++++|+|.|+||++..+++.|+++..||++++
T Consensus 755 alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~--------- 825 (1176)
T KOG0369|consen 755 ALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNL--------- 825 (1176)
T ss_pred HHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccccccCCchhhhhhhccCCcccCCCch---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCC-CCCCcCcccEEEecCCCccHHHHHHHHHHCCC--C
Q psy15244 937 WRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--D 1013 (1427)
Q Consensus 937 v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~-~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~ 1013 (1427)
+.+..++.||+..|..|.||+| ..+++.+++||.|+||||||+||++|+.++|| +
T Consensus 826 ----------------------~~v~eysaYWe~~R~LYapFe~tttmksgn~dVY~hEIPGGQyTNL~FQA~slGLG~q 883 (1176)
T KOG0369|consen 826 ----------------------EHVREYSAYWEQMRLLYAPFECTTTMKSGNSDVYQHEIPGGQYTNLQFQAFSLGLGEQ 883 (1176)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhchhhhcccccCCCcchhhccCCCcceeeeeeehhhccchhh
Confidence 7788899999999999999997 48999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHH
Q psy15244 1014 FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEK 1093 (1427)
Q Consensus 1014 ~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~ 1093 (1427)
|+|++++|.+.|.+|||+||||||||||||+|+|||+|+|+.+++.+++++++||+||++||+|++|+|||||||+++.+
T Consensus 884 ~~evKkaYrEAN~lLGDiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~rA~~LsFP~SVvdf~qG~iGqP~gGFPEPlRs~ 963 (1176)
T KOG0369|consen 884 FAEVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTRDDVERRAEELSFPKSVVDFFQGLIGQPYGGFPEPLRSK 963 (1176)
T ss_pred HHHHHHHHHHHHHHhhCeeeeccchhhHHHHHHHHHhcCCCHHHHHHHhhhcCCcHHHHHHHhcccCCCCCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccccc
Q psy15244 1094 VLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDC 1173 (1427)
Q Consensus 1094 ~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~ 1173 (1427)
||++.+.+++|||.. ++|.||+++ ++ +|.+++| .+++||
T Consensus 964 VLk~~~r~~gRPG~~-----------l~p~Dldai-----~k---eL~e~~~---------------------~~s~~D- 1002 (1176)
T KOG0369|consen 964 VLKGKPRLTGRPGAE-----------LPPLDLDAI-----RK---ELQERHG---------------------DVSECD- 1002 (1176)
T ss_pred HhcCCCccCCCCCCc-----------CCccCHHHH-----HH---HHHHhcC---------------------CCcHHH-
Confidence 999999999999999 999999999 88 8999998 389999
Q ss_pred ccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEE
Q psy15244 1174 RENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFL 1253 (1427)
Q Consensus 1174 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~ 1253 (1427)
++||+|||.||++|.+||++|||+++|||+.|+.|.+++||+.|+++.||+++|+.+-.+-.++.+++|+|||+
T Consensus 1003 ------v~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~Veie~GKTL~ik~lAvg~~~~~~GqReVfFe 1076 (1176)
T KOG0369|consen 1003 ------VASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFEVEIEQGKTLIIKLLAVGDLLKKTGQREVFFE 1076 (1176)
T ss_pred ------hhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEEEEeccCcEEEEEeeecccccccCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999994444434444444444444
Q ss_pred eccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECC
Q psy15244 1254 YNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1333 (1427)
Q Consensus 1254 ~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG 1333 (1427)
||||+|++.+.
T Consensus 1077 LNGqlR~i~v~--------------------------------------------------------------------- 1087 (1176)
T KOG0369|consen 1077 LNGQLRSIRVA--------------------------------------------------------------------- 1087 (1176)
T ss_pred ecCceeeEEee---------------------------------------------------------------------
Confidence 44444444444
Q ss_pred EEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCC
Q psy15244 1334 QLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413 (1427)
Q Consensus 1334 ~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G 1413 (1427)
|+.+......+++|++++.++|+|||||+|+++.|++|+.|+|||+|+++.|||||+.|.||.+|+|+++++..|
T Consensus 1088 -----Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g 1162 (1176)
T KOG0369|consen 1088 -----DKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQG 1162 (1176)
T ss_pred -----chhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCC
Confidence 444445556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCEEEEEe
Q psy15244 1414 GQVAQNDLVVVLD 1426 (1427)
Q Consensus 1414 ~~V~~g~~L~~i~ 1426 (1427)
+.++.||++++||
T Consensus 1163 ~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1163 TKVEGGDLIVELE 1175 (1176)
T ss_pred CcccccceEEEcc
Confidence 9999999999987
No 3
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=4.6e-244 Score=2346.60 Aligned_cols=1133 Identities=51% Similarity=0.846 Sum_probs=1071.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCC--CCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG--MPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~--~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
||||+||||||+|++|+|+++|+++|++|+++|..++|+.+||++|+++.. ..+..+|+|++.|+++|+++++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999999754 356789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
||||+||++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998755678999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+||++|++.+||.++++.+.+++..+|+++.++||+||++++|++|++++|++|+++++++|+|++||+|+++++
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
.+|++.++++.+++|++.|.++++++||.|+++|||++|++|++||||||||+|++|++||++||+|++++|+++|.|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred Cc--cccc-cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 377 LT--ELGL-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 377 l~--~l~l-~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|+ ++++ .|+.+..+||||||||++|||.++|.|++|+|+.|++|+++|||+|++..+.|+.|+|+||||++|+++||
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 98 5554 58889999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhhcC
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1427)
+||++|++||.|||++++|+||+|||+||++||+||+|++| +++|+||++||+||++.... +|++|||+||+|++|||
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~-~~~t~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~vn~ 478 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDG-SYDTRFIDTTPELFQFVKSQ-DRATKLLTYLADVTVNG 478 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCC-CccchhhhcChhhcCCCccc-chhhhHHhHhheeEecC
Confidence 99999999999999999999999999999999999999999 99999999999999998877 99999999999999999
Q ss_pred CCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeeccc
Q psy15244 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLK 613 (1427)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1427)
++.... ..++....|.+|.+... ..|+|.||||+|+++||
T Consensus 479 ~~~~~~-~~~~~~~~~~~~~~~~~----------------------------~~~~~~g~~~~~~~~g~----------- 518 (1143)
T TIGR01235 479 HPEAKD-KLKPLENAPRVVVLYAD----------------------------QNPVPRGTKQILDEKGP----------- 518 (1143)
T ss_pred CCCcCC-CCCCCCCCCCCCCCCcc----------------------------cCCCCCChHHHHHhhCH-----------
Confidence 855332 22345555666643210 13678999999999999
Q ss_pred eeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhh
Q psy15244 614 HVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANR 693 (1427)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~ 693 (1427)
++|++|||++++|+||||||||||||++||||||+||++||+.+++.
T Consensus 519 ---------------------------------~~~~~~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~ 565 (1143)
T TIGR01235 519 ---------------------------------EGFAEWVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHA 565 (1143)
T ss_pred ---------------------------------HHHHHHHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999999999999999997
Q ss_pred cCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEe
Q psy15244 694 FNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773 (1427)
Q Consensus 694 ~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif 773 (1427)
++|++|+|+|||||||+|+|||+||||+||+.||+.+||++||||+||+|+|||++||||++++|++.++++|||+||||
T Consensus 566 ~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~Gidifrif 645 (1143)
T TIGR01235 566 LPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVF 645 (1143)
T ss_pred cCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHH
Q psy15244 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKL 853 (1427)
Q Consensus 774 ~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~ 853 (1427)
|++||++||+.++++++++|+ +++++||||+|+.+|...+|+++||+++++++.++|+|+|+||||+|+++|.++++
T Consensus 646 D~lN~~~n~~~~~~~~~~~g~---~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~ 722 (1143)
T TIGR01235 646 DSLNWVENMRVGMDAVAEAGK---VVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKL 722 (1143)
T ss_pred ccCcCHHHHHHHHHHHHHcCC---EEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHH
Confidence 999999999999999999999 99999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHH
Q psy15244 854 LIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDY 933 (1427)
Q Consensus 854 lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l 933 (1427)
||++||+++ ++|||+|||||+|+|+||+++|++||||+||+|++||||+||||++|+++++|+.+++++++|+
T Consensus 723 Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl------ 795 (1143)
T TIGR01235 723 LIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNV------ 795 (1143)
T ss_pred HHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCH------
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC-
Q psy15244 934 SSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL- 1012 (1427)
Q Consensus 934 ~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl- 1012 (1427)
..+...++||+++|.+|.+|+ +.+.+++.+||.|||||||||||++||+++|+
T Consensus 796 -------------------------~~l~~is~~~~~vr~~y~~~~-~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g~~ 849 (1143)
T TIGR01235 796 -------------------------AWIRELSAYWEAVRNLYAAFE-SDLKGPASEVYLHEMPGGQYTNLQFQARSLGLG 849 (1143)
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhcCC-CCCcCCCcCeEEecCCCcccchHHHHHHHCCcH
Confidence 667778888999999999999 89999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHH
Q psy15244 1013 -DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQ 1091 (1427)
Q Consensus 1013 -~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~ 1091 (1427)
+|+||+++|++||++||||||||||||||||||+|||+|+|+.++++++++.++||+||++|++|+||+||+|||++|+
T Consensus 850 ~~~~~v~~~~~~v~~~lG~~~~VTP~Sq~vg~~A~~~v~~~l~~~~v~~~~~~~~~~~~v~~~~~G~~G~pp~~~~~~~~ 929 (1143)
T TIGR01235 850 DRWHEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSVVEFLKGDIGQPHGGFPEPLQ 929 (1143)
T ss_pred hhHHHHHHHHHHHHHHcCCCceECChhHhHHHHHHHHHHhccChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccc
Q psy15244 1092 EKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMAC 1171 (1427)
Q Consensus 1092 ~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~ 1171 (1427)
++||+|++++++||++. ++|.||+++ ++ ++.+++| .++++|
T Consensus 930 ~~vl~~~~~~~~rp~~~-----------l~p~~~~~~-----~~---~~~~~~~--------------------~~~~~e 970 (1143)
T TIGR01235 930 KKVLKGEKPITVRPGSL-----------LEPADLDAI-----RK---DLQEKHE--------------------REVSDF 970 (1143)
T ss_pred HHHhCCCCCCcCCcccc-----------CCcccHHHH-----HH---HHHHHhc--------------------CCCCHH
Confidence 99999999999999999 999999888 87 7777777 457899
Q ss_pred ccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEE
Q psy15244 1172 DCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVF 1251 (1427)
Q Consensus 1172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~ 1251 (1427)
| +|||+|||+||.+|++++++||+++.|||+.||+|+++|+++.+++++||++.|+
T Consensus 971 d-------~~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~v~~~~g~~~~i~----------------- 1026 (1143)
T TIGR01235 971 D-------VASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTLIIK----------------- 1026 (1143)
T ss_pred H-------HHHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEEEEecCCcEEEEE-----------------
Confidence 9 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEE
Q psy15244 1252 FLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLY 1331 (1427)
Q Consensus 1252 ~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~el 1331 (1427)
+.++++++.. |.|+++|++
T Consensus 1027 ------------------------------------------------------------~~~~~~~~~~-g~r~v~fEl 1045 (1143)
T TIGR01235 1027 ------------------------------------------------------------LQAVGATDSQ-GEREVFFEL 1045 (1143)
T ss_pred ------------------------------------------------------------eccccccCCC-CcEEEEEEE
Confidence 4444444444 667777777
Q ss_pred CCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEE
Q psy15244 1332 NGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI 1408 (1427)
Q Consensus 1332 nG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i 1408 (1427)
||+.++| |.+.......++++++.++.+|.|||||+|++|.|++||.|++||+|++|||||||++|.||.+|+|+++
T Consensus 1046 NGq~reV~V~D~s~~~~~~~~~KAd~~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i 1125 (1143)
T TIGR01235 1046 NGQPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEV 1125 (1143)
T ss_pred CCeEEEEEecCcccccccccccccccccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEE
Confidence 7777665 4333333345667888899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeeCCCCEEEEEe
Q psy15244 1409 FVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1409 ~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++|+.|+.||+|++|+
T Consensus 1126 ~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1126 LVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EeCCCCEECCCCEEEEeC
Confidence 999999999999999985
No 4
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2e-232 Score=2250.95 Aligned_cols=1135 Identities=50% Similarity=0.846 Sum_probs=1076.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+||+||||+|||+||++++|+|+++|++++++|+++|..++|..+||++|+++.+..+..+|+|++.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999999999999999999999999999999998655678899999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||++|++.++++|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987436899999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++..+|+++.+++|+||++++|+++++++|++|+++++++|+|++|++||++
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999999888899999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|++.++++.+++|++.+.++++++||.|++|+||++|++|++||||||||+|++|+++|++||+|++++++++++|
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred CCCccccc---cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLTELGL---CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~~l~l---~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
.+++.+.+ .|+.+..+||||+|||++|||.++|.|++|+|+.+++|+++++|+|++..+.|..|+++|||+++|||+
T Consensus 323 ~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~ 402 (1146)
T PRK12999 323 ATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTA 402 (1146)
T ss_pred CCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEE
Confidence 99875432 577888899999999999999999999999999999999999999987777999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
||+|+++|+++|.+||++++|+|++|||+||++||+||+|++| +++|+||++||+||.+.... +|++|||.||++++|
T Consensus 403 ~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~-~~~t~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 480 (1146)
T PRK12999 403 WGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAG-DYTTSFIDETPELFDFPKRR-DRGTKLLTYIADVTV 480 (1146)
T ss_pred EcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCC-CccchhhhcChhhhhCCccc-ccHHHHHhhhheeEE
Confidence 9999999999999999999999999999999999999999999 99999999999999998876 999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeec
Q psy15244 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRK 611 (1427)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (1427)
||+++... .++....|.+|..+. ..++|.||||+|+++||
T Consensus 481 ~~~~~~~~--~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~g~--------- 520 (1146)
T PRK12999 481 NGFPGVKK--KPPVFPDPRLPKVDL-----------------------------SAPPPAGTKQILDELGP--------- 520 (1146)
T ss_pred eCCCCccC--CCCCCCCCCCCCCCC-----------------------------CCCCCCchHHHhhhcCH---------
Confidence 99865433 345666677765321 13667999999999999
Q ss_pred cceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHH
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVA 691 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~ 691 (1427)
++|++|||++++|+|+||||||||||++++||+++||++||+.|+
T Consensus 521 -----------------------------------~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~ 565 (1146)
T PRK12999 521 -----------------------------------EGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATA 565 (1146)
T ss_pred -----------------------------------HHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEE
Q psy15244 692 NRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771 (1427)
Q Consensus 692 ~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~r 771 (1427)
+++.|+++||+|||||||+|+||++||||+||+.+|+.+||+++|||+||+|+|||++||||+++.||+.|+++|+|+||
T Consensus 566 ~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~r 645 (1146)
T PRK12999 566 RLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFR 645 (1146)
T ss_pred HHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEE
Confidence 95559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHH
Q psy15244 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851 (1427)
Q Consensus 772 if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~ 851 (1427)
|||++||++||+.++++++++|. .+++++||+||+++|..++|+++||++++++++++|+|+|+||||+|+++|.++
T Consensus 646 ifd~lnd~~~~~~~i~~vk~~g~---~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~ 722 (1146)
T PRK12999 646 IFDSLNWVENMRVAIDAVRETGK---IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAA 722 (1146)
T ss_pred EeccCChHHHHHHHHHHHHHcCC---eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHH
Confidence 99999999999999999999999 999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHH
Q psy15244 852 KLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVC 931 (1427)
Q Consensus 852 ~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~ 931 (1427)
++||++||+++ ++|||+|+|||+|||+||+++|++||||+||+|++|||||||||+||+++++|+.+++++++|+
T Consensus 723 ~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl---- 797 (1146)
T PRK12999 723 YELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDL---- 797 (1146)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCH----
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCC
Q psy15244 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~g 1011 (1427)
..+...++||+++|.+|.+|+ +.+.+.+.+||.|||||||||||++||+++|
T Consensus 798 ---------------------------~~l~~~s~~~~~~r~~y~~~~-~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g 849 (1146)
T PRK12999 798 ---------------------------DAIRKLSPYWEAVRPYYAPFE-SGLKSPTTEVYLHEMPGGQYSNLKQQARALG 849 (1146)
T ss_pred ---------------------------HHHHHHHHHHHHHHhHhhccC-CCCCCCCcCeEEecCCCcccchHHHHHHHCC
Confidence 667777888999999999999 9999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHh
Q psy15244 1012 L--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKK 1089 (1427)
Q Consensus 1012 l--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~ 1089 (1427)
+ +|+||+++|++||++||||||||||||||||||+|||+|+|+.+++.++++.++||+||++|++|+||+||+|||++
T Consensus 850 ~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~G~~~~~~~~~ 929 (1146)
T PRK12999 850 LGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDFPDSVVSFLKGELGQPPGGFPEP 929 (1146)
T ss_pred hHhHHHHHHHHHHHHHHHcCCCceeCccchhhHHHHHHHHhhccchhhhhccCceeeCCHHHHHHhCcCCCCCCCCCCHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcc
Q psy15244 1090 LQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIM 1169 (1427)
Q Consensus 1090 ~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~ 1169 (1427)
|+++||+|++++++||++. ++|.||+++ ++ ++.+++| .+.+
T Consensus 930 ~~~~~l~~~~~~~~rp~~~-----------~~~~d~~~~-----~~---~~~~~~~--------------------~~~~ 970 (1146)
T PRK12999 930 LQKKVLKGEEPITVRPGEL-----------LEPVDFEAE-----RA---ELEEKLG--------------------REVT 970 (1146)
T ss_pred HHHHHhCCCCCCcCChhhh-----------CCcccHHHH-----HH---HHHHHhc--------------------CCCC
Confidence 9999999999999999999 899899888 88 7777777 4578
Q ss_pred ccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCccee
Q psy15244 1170 ACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERT 1249 (1427)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~ 1249 (1427)
+|| +|||+|||++|.+|++++++|||++.|||+.||+|+++|+++.+++++||++.|+
T Consensus 971 ~~~-------~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~~~~~~gk~~~i~--------------- 1028 (1146)
T PRK12999 971 DRD-------VLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIEVEIEPGKTLIIK--------------- 1028 (1146)
T ss_pred HHH-------HHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEEeecCCCceeEEE---------------
Confidence 899 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEE
Q psy15244 1250 VFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFF 1329 (1427)
Q Consensus 1250 ~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~ 1329 (1427)
+.++++++.+ |+|+++|
T Consensus 1029 --------------------------------------------------------------~~~~~~~~~~-g~~~~~~ 1045 (1146)
T PRK12999 1029 --------------------------------------------------------------LEAIGEPDED-GMRTVYF 1045 (1146)
T ss_pred --------------------------------------------------------------eecccCcccC-CcEEEEE
Confidence 4555655555 8888888
Q ss_pred EECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEE
Q psy15244 1330 LYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVK 1406 (1427)
Q Consensus 1330 elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~ 1406 (1427)
++||+.|+| |.+.......++++++.++.+|.|||||+|++|+|++||.|++||+|+++||||||++|.||.+|+|+
T Consensus 1046 ~vnG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~ 1125 (1146)
T PRK12999 1046 ELNGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVK 1125 (1146)
T ss_pred EECCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEE
Confidence 888888887 44333333445677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++++|+.|+.||+|++|+
T Consensus 1126 ~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1126 RVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEeCCCCEECCCCEEEEEc
Confidence 99999999999999999986
No 5
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=7e-136 Score=1249.44 Aligned_cols=586 Identities=30% Similarity=0.536 Sum_probs=538.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|+|+||||||||||+++|||+++|+++||+.+|+ +|+++||+|||||||+|+||++|||||||+.+|+.+||+++
T Consensus 1 ~~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~--~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~l 78 (596)
T PRK14042 1 MSKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDD--VGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQL 78 (596)
T ss_pred CCceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHh--cCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCce
Confidence 4789999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||+|++||++||||++++|++.|+++|+|+|||||++||++||+.++++++++|+ +++++||||+ +|
T Consensus 79 qmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~---~~~~~i~yt~---sp--- 149 (596)
T PRK14042 79 SMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK---HAQGAICYTT---SP--- 149 (596)
T ss_pred EEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC---EEEEEEEecC---CC---
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999995 77
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.|+++||+++++++.++|+|+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++||||+||+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+|+|||++|+++++|+.+|+++++|+ ..+...++||.++|+.|
T Consensus 229 ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl-------------------------------~~l~~~~~~~~~vr~~y 277 (596)
T PRK14042 229 AISSFSGGASHPPTEALVAALTDTPYDTELDL-------------------------------NILLEIDDYFKAVRKKY 277 (596)
T ss_pred ccccccCCCCcHhHHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66777888999999999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
.+|+ +.+.+.++++|.|||||||+|||++||+++|+ +|+||+++|++||++||||||||||||||||||+|||..|.
T Consensus 278 ~~~~-~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~~~VTP~Sqivg~qA~~Nvl~g~ 356 (596)
T PRK14042 278 SQFE-SEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLTGE 356 (596)
T ss_pred hhcC-CccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeECCcCcEEEEEehhhccChh
Confidence 9998 89999999999999999999999999999999 99999999999999999999999999999999999887665
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKA 1133 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~ 1133 (1427)
+|+ +||+||++|++|+||+||+|||++|+++||++++++++||++. ++| |++++
T Consensus 357 r~~---------~~~~~v~~~~~G~~G~pp~~~~~~l~~~il~~~~~~~~rp~~~-----------~~~-~~~~~----- 410 (596)
T PRK14042 357 RYK---------TITNEVKLYCQGKYGTPPGKISSALRKKAIGRTEVIEVRPGDL-----------LPN-ELDQL----- 410 (596)
T ss_pred hee---------ECCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCcccc-----------CCc-CHHHH-----
Confidence 553 7999999999999999999999999999999999999999999 664 55554
Q ss_pred HHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccC
Q psy15244 1134 TKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLN 1213 (1427)
Q Consensus 1134 ~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~ 1213 (1427)
++ ++.+. ..++|| +|+|+|||+++.+|+++|++ ++.+|+..|++
T Consensus 411 ~~---~~~~~-----------------------~~~~ed-------~l~y~l~p~v~~~f~~~~~~---~~~~~~~~~~~ 454 (596)
T PRK14042 411 QN---EISDL-----------------------ALSDED-------VLLYAMFPEIGRQFLEQRKN---NQLIPEPLLTQ 454 (596)
T ss_pred HH---HHhhc-----------------------cCCHHH-------HHHHHhCcHHHHHHHHHHhc---cccCCcccccc
Confidence 44 22211 267789 99999999999999999988 56889999999
Q ss_pred CCCCCc----EEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceec
Q psy15244 1214 GPNIGE----EFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFL 1289 (1427)
Q Consensus 1214 g~~~g~----~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v 1289 (1427)
++++|+ ++.|+. +||++.|+
T Consensus 455 ~~~~~~~~~~e~~v~~-~Gk~~~Ik------------------------------------------------------- 478 (596)
T PRK14042 455 SSAPDNSVMSEFDIIL-HGESYHVK------------------------------------------------------- 478 (596)
T ss_pred ccccCCCCceEEEEEE-CCEEEEEE-------------------------------------------------------
Confidence 988777 889985 59999998
Q ss_pred cCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCe
Q psy15244 1290 NGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPG 1366 (1427)
Q Consensus 1290 ~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G 1366 (1427)
+.++++ + ..|.|+++|++||+.+.+ |.+........++++++++++|+|||||
T Consensus 479 ----------------------l~~~g~-~-~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G 534 (596)
T PRK14042 479 ----------------------VAGYGM-I-EHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPG 534 (596)
T ss_pred ----------------------Eecccc-c-cCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcce
Confidence 333333 1 236666666666666655 3333233334556777889999999999
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
+|++|+|++||.|++||+|+++||||||++|.||.+|+|+++++++|+.|+.|++|++|++
T Consensus 535 ~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 535 SIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 6
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=5.2e-126 Score=1173.74 Aligned_cols=584 Identities=32% Similarity=0.544 Sum_probs=537.1
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+||||||||||++++||+++||++||+.|++ +|+++||+||||+||+|+||++||||+||+.+++.+||+++
T Consensus 1 m~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~--~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l 78 (592)
T PRK09282 1 MKKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDK--VGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPL 78 (592)
T ss_pred CCccEEEECCCCccccccCCccCCHHHHHHHHHHHHH--cCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEE
Confidence 3679999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|+ .+++++||+. +|
T Consensus 79 ~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p--- 149 (592)
T PRK09282 79 QMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA---HVQGTISYTT---SP--- 149 (592)
T ss_pred EEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC---EEEEEEEecc---CC---
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999993 56
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+|+++||+++++++.++|+|+|+||||+|+++|.++++||+++|+++ ++|||+|+|||+|||+||+++|++|||++||+
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 69999999999999999999999999999999999999999999999 69999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+++|||+||+++++|+.+|+++++|+ ..+...++||.+.+..|
T Consensus 229 ai~g~g~~agn~~~e~vv~~L~~~g~~~~idl-------------------------------~~l~~~s~~~~~~~~~y 277 (592)
T PRK09282 229 AISPLAFGTSQPPTESMVAALKGTPYDTGLDL-------------------------------ELLFEIAEYFREVRKKY 277 (592)
T ss_pred eccccCCCcCCHhHHHHHHHHHhCCCCCccCH-------------------------------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 45555666677788999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
++|+ +.+.+.++++|.|+|||||+||+.+||+++|+ +|++|+++|++||++||||||||||||||||||+|||.+|.
T Consensus 278 ~~~~-~~~~~~~~~v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv~~~~ 356 (592)
T PRK09282 278 KQFE-SEFTIVDTRVLIHQVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGE 356 (592)
T ss_pred hcCC-CccccCCccEEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChhHhHHHHHHHHHHcCC
Confidence 9999 99999999999999999999999999999999 99999999999999999999999999999999999999886
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKA 1133 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~ 1133 (1427)
+|. +||+||++|++|+||+||+|||++|+++||++++++++||++. ++| ||+++
T Consensus 357 ~~~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p-~~~~~----- 410 (592)
T PRK09282 357 RYK---------VITKEVKDYVKGLYGRPPAPINEELRKKIIGDEEPITCRPADL-----------LEP-ELEKA----- 410 (592)
T ss_pred ccc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCcccc-----------cCC-CHHHH-----
Confidence 664 7999999999999999999999999999999999999999999 888 77777
Q ss_pred HHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC--CCCcccc
Q psy15244 1134 TKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD--KLPTRIF 1211 (1427)
Q Consensus 1134 ~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~l~~~~f 1211 (1427)
++ ++.+.++ . ..|| +|+|+|||+++.+|++++++||+++ .+|++.|
T Consensus 411 ~~---~~~~~~~--------------------~--~~e~-------~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (592)
T PRK09282 411 RK---EAEELGK--------------------S--EKED-------VLTYALFPQIAKKFLEEREAGELKPEPEPKEAAA 458 (592)
T ss_pred HH---HHHHHhc--------------------C--CHHH-------HHHHHhCcHHHHHHHHHHhccCCcccccCCcccc
Confidence 76 5544433 1 1178 9999999999999999999999998 9999999
Q ss_pred cCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccC
Q psy15244 1212 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNG 1291 (1427)
Q Consensus 1212 ~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~ 1291 (1427)
++|++.|+++.++++ ||++.|+
T Consensus 459 ~~~~~~~~~~~v~i~-Gk~~~i~--------------------------------------------------------- 480 (592)
T PRK09282 459 AGAEGIPTEFKVEVD-GEKYEVK--------------------------------------------------------- 480 (592)
T ss_pred ccCCCCCeEEEEEEC-CEEEEEE---------------------------------------------------------
Confidence 999999999999998 9999998
Q ss_pred CCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1292 PNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1292 ~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.++++++ .|+++|++||+.++| |.+... ...++++.++.+|.|||+|+|
T Consensus 481 --------------------~~~~g~~~----~r~~~~~~ng~~~~v~v~d~~~~~---~~~~~~~~~~~~V~Ap~~G~v 533 (592)
T PRK09282 481 --------------------IEGVKAEG----KRPFYLRVDGMPEEVVVEPLKEIV---VGGRPRASAPGAVTSPMPGTV 533 (592)
T ss_pred --------------------EeeccCCC----cceEEEEecCceeeeeccCccccc---ccccCCCCCCceEeCCCcEEE
Confidence 22233221 455566666665555 221111 011566778899999999999
Q ss_pred EEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|.|++||.|++||+|++||+||||++|+||.+|+|+++.+++|+.|+.||+|++|+
T Consensus 534 ~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 534 VKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred EEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986
No 7
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.9e-124 Score=1156.35 Aligned_cols=587 Identities=32% Similarity=0.491 Sum_probs=521.0
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|+|+||||||||||++++||+++||++||+.|++ +|+++||+|||||||+|+||++|+|||||+.+++.+||+++|
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~--~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDK--VGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ 80 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHH--cCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 579999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||+|++||++||||++++|++.|+++|+|+||||+++||++||+.++++||++|. +++++||||. +| +
T Consensus 81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~---~~~~~i~yt~---~p---~ 151 (593)
T PRK14040 81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGA---HAQGTLSYTT---SP---V 151 (593)
T ss_pred EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCC---eEEEEEEEee---CC---c
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999994 56 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
|+++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++|||+|+|||+|||+||+++|++|||++||+|
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~a 230 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTA 230 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEec
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcC
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYA 976 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~ 976 (1427)
++|||+|+|||+||+++++|+.+++++++|+ ..+...++||..++..|+
T Consensus 231 i~glG~~~Gn~~le~vv~~L~~~~~~~gidl-------------------------------~~l~~is~~~~~v~~~Y~ 279 (593)
T PRK14040 231 ISSMSMTYGHSATETLVATLEGTERDTGLDI-------------------------------LKLEEIAAYFREVRKKYA 279 (593)
T ss_pred cccccccccchhHHHHHHHHHhcCCCcCCCH-------------------------------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 556666777778889999
Q ss_pred CCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCC
Q psy15244 977 PFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLS 1054 (1427)
Q Consensus 977 ~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~ 1054 (1427)
+|+ +.+.+.+++||.|||||||||||.+||+++|+ +|++|+++|++||++||||||||||||||||||+|||..|.+
T Consensus 280 ~~~-~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP~Sqivg~~A~~N~l~~~r 358 (593)
T PRK14040 280 KFE-GQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGER 358 (593)
T ss_pred cCC-cccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECChhHHHHHHHHHhcCChHh
Confidence 999 99999999999999999999999999999999 999999999999999999999999999999999998876655
Q ss_pred hhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhH
Q psy15244 1055 YRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKAT 1134 (1427)
Q Consensus 1055 ~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~ 1134 (1427)
|+ +||+||++|++|+||+||+|||++++++||+|++++++||++. ++|. ++++ +
T Consensus 359 ~~---------~~~~~v~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p~-~~~~-----~ 412 (593)
T PRK14040 359 YK---------TITKETAGVLKGEYGATPAPVNAELQARVLEGAEPITCRPADL-----------LAPE-LDKL-----E 412 (593)
T ss_pred he---------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhh-----------cCch-HHHH-----H
Confidence 43 7999999999999999999999999999999999999999999 6664 4454 6
Q ss_pred HHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCC
Q psy15244 1135 KKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNG 1214 (1427)
Q Consensus 1135 ~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g 1214 (1427)
+++.++.+.-|. .+.+.++|| +|+|+|||++|.+|++++++ +.|+++
T Consensus 413 ~~~~~~~~~~~~-----------------~~~~e~~e~-------~l~~~~~p~v~~~f~~~~~~---------~~~~~~ 459 (593)
T PRK14040 413 AELRRQAQEKGI-----------------TLAENAIDD-------VLTYALFPQIGLKFLENRHN---------PAAFEP 459 (593)
T ss_pred HHHHHHhhhcCC-----------------CcccCCHHH-------HHHHHhccHHHHHHHHhhcc---------cccccC
Confidence 633332211130 011113367 99999999999999999976 577888
Q ss_pred CCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCC
Q psy15244 1215 PNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNI 1294 (1427)
Q Consensus 1215 ~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~ 1294 (1427)
++++++..+. + ..+..+.|+++|++||+.+.+.+.+..... ...+
T Consensus 460 ~~~~~~~~~~---~------------~~~e~g~~~~~~~vnG~~~~V~v~~~~~~~-----~~~~--------------- 504 (593)
T PRK14040 460 VPQAEAAQPA---A------------KAEPAGSETYTVEVEGKAYVVKVSEGGDIS-----QITP--------------- 504 (593)
T ss_pred CCcccccccc---c------------cCCCCCCeEEEEEECCEEEEEEECCCCccc-----cccc---------------
Confidence 8888865442 1 123457899999999999999998772100 0000
Q ss_pred CcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccC-CCCCCCceecCCCeEEEEEEe
Q psy15244 1295 GEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKA-DSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1295 g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a-~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.+.... ....++++ ++.++.+|+|||+|+|++|+|
T Consensus 505 -------------------------------------~~~~~~-------~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V 540 (593)
T PRK14040 505 -------------------------------------AAPAAA-------PAAAAAAAPAAAAGEPVTAPLAGNIFKVIV 540 (593)
T ss_pred -------------------------------------cccccc-------cccccccccCCCCCceEECCccEEEEEEEe
Confidence 000000 00011122 445677999999999999999
Q ss_pred cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1374 KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++||.|++||+|+++|+||||++|.||.+|+|+++++++|+.|..|++|++|
T Consensus 541 ~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 541 TEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999987
No 8
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=2.2e-122 Score=1137.77 Aligned_cols=579 Identities=31% Similarity=0.511 Sum_probs=519.1
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+||++++||+++||++||+.|++ +|+++||+|||||||+|++|++|+||++++.+++.+|++++|||+|
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~--~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDD--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHH--cCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 68999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
|.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|+ .+++++||+. +| +|+++
T Consensus 79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p---~~~~~ 149 (582)
T TIGR01108 79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA---HAQGTISYTT---SP---VHTLE 149 (582)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---EEEEEEEecc---CC---CCCHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999993 77 69999
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
||+++++++.++|||+|+||||+|+++|.+++++|++||+++ ++||++|+|||+|||+||+++|++|||++||+|++||
T Consensus 150 ~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~Gl 228 (582)
T TIGR01108 150 TYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSM 228 (582)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccc
Confidence 999999999999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCC
Q psy15244 901 SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFEC 980 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~ 980 (1427)
|||+|||+||+++++|+.+|+++++|+++|. ..++||.+++++|++|+
T Consensus 229 G~~tGn~~le~vv~~L~~~g~~tgid~~~L~-------------------------------~l~~~~~~v~~~Y~~~~- 276 (582)
T TIGR01108 229 SGGTSHPPTETMVAALRGTGYDTGLDIELLL-------------------------------EIAAYFREVRKKYSQFE- 276 (582)
T ss_pred cccccChhHHHHHHHHHhcCCCcccCHHHHH-------------------------------HHHHHHHHHHHHhhcCC-
Confidence 9999999999999999999999999995554 45666666888999998
Q ss_pred CCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhh
Q psy15244 981 TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDV 1058 (1427)
Q Consensus 981 ~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~ 1058 (1427)
|.+++.++++|+||+||||+|||.+||+++|+ +|++|+++|++||++|||||||||+||||||||+|||..|.+|+
T Consensus 277 ~~~~~~~~~v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~~~r~~-- 354 (582)
T TIGR01108 277 GQLKGPDSRILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGERYK-- 354 (582)
T ss_pred CcccCCCccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCccHHHHHHHHHhhcCHHhhe--
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999887665553
Q ss_pred hhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCc-ccCCCCCCCccccccccCCCccccccccChhhHHHH
Q psy15244 1059 MENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH-ALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKF 1137 (1427)
Q Consensus 1059 ~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~-~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~ 1137 (1427)
+||+||++|++|+||+||+|||++|+++||++++++ ++||++. ++|. ++++ ++
T Consensus 355 -------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~~rp~~~-----------~~~~-~~~~-----~~-- 408 (582)
T TIGR01108 355 -------TITKETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCRPADL-----------LEPE-LDKL-----RA-- 408 (582)
T ss_pred -------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCcCCCCcccc-----------cCch-HHHH-----HH--
Confidence 699999999999999999999999999999999999 9999999 6664 5444 66
Q ss_pred HhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCC
Q psy15244 1138 MKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNI 1217 (1427)
Q Consensus 1138 ~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~ 1217 (1427)
++.++++ ...++|| +|+|+|||+++.+|++++++| .|++++++
T Consensus 409 -~~~~~~~--------------------~~~~~e~-------~l~~~~~p~~~~~~~~~~~~~---------~~~~~~~~ 451 (582)
T TIGR01108 409 -EVREAGA--------------------EKNSIED-------VLTYALFPQVGLKFLENRHNP---------AAFEPKPE 451 (582)
T ss_pred -HHHHhcc--------------------cCCCHHH-------HHHHHhccHHHHHHHHhhhcc---------ccccCCCC
Confidence 5655544 2367899 999999999999999999987 67889999
Q ss_pred CcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcc
Q psy15244 1218 GEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEE 1297 (1427)
Q Consensus 1218 g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~ 1297 (1427)
++++. + . +++.... ..+.++.|++||++||+.+.+++.+.....
T Consensus 452 ~~~~~---~--~--~~~~~~~--~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~--------------------------- 495 (582)
T TIGR01108 452 EKVIE---Q--E--HAQVVGK--YEETHASGSYTVEVEGKAFVVKVSPGGDVS--------------------------- 495 (582)
T ss_pred cchhh---h--h--hhhcccc--ccccCCceEEEEEECCEEEEEEEcCCcccc---------------------------
Confidence 98766 1 1 2221111 344557899999999999999888872110
Q ss_pred eeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCC
Q psy15244 1298 FSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQ 1377 (1427)
Q Consensus 1298 ~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd 1377 (1427)
. +... .. .......++++++++++|.|||||+|++|+|++||
T Consensus 496 --------------~--~~~~-~~---------------------~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd 537 (582)
T TIGR01108 496 --------------Q--ITAS-AP---------------------ANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQ 537 (582)
T ss_pred --------------c--cccc-cc---------------------cccccccccCCCCCCCeEeCCccEEEEEEEeCCCC
Confidence 0 0000 00 00001233456678899999999999999999999
Q ss_pred EEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEE
Q psy15244 1378 QVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLV 1422 (1427)
Q Consensus 1378 ~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L 1422 (1427)
.|++||+|++|||||||++|.||.+|+|+++++++|+.|+.|++|
T Consensus 538 ~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 538 TVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999999999999999999999999999975
No 9
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=3.7e-115 Score=974.06 Aligned_cols=443 Identities=35% Similarity=0.584 Sum_probs=419.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+||||||||||++|||||++||++|++.||+ +|++|+|+|||||||+|+|||+||||||||+||+.+||+++
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~--~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~L 80 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDK--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKL 80 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHh--cCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHH
Confidence 5789999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||+|+|||++|+|+|+++|+++|+++|+|+|||||++||++||+.+++++++.|. +++++|||| .+|
T Consensus 81 QMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~---h~q~~i~YT---~sP--- 151 (472)
T COG5016 81 QMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGA---HVQGTISYT---TSP--- 151 (472)
T ss_pred HHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCc---eeEEEEEec---cCC---
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999 588
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.|+.+||+++++++.++|+|+||||||+|+++|..+|+||+++|+.+ ++||++|||+|.|+|.+++++|++||||+||+
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhhh
Confidence 79999999999999999999999999999999999999999999999 69999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
++++|+++||||++|+++++|+++++|+|+|+ +.+..+.+|+.++|+.|
T Consensus 231 Aisp~S~gtsqP~tEtmv~aL~gt~yDtgld~-------------------------------~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 231 AISPLSGGTSQPATETMVAALRGTGYDTGLDL-------------------------------ELLEEIAEYFREVRKKY 279 (472)
T ss_pred hhccccCCCCCCcHHHHHHHhcCCCCCccccH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66777888999999999
Q ss_pred -CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcC
Q psy15244 976 -APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052 (1427)
Q Consensus 976 -~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~ 1052 (1427)
..|+ +...+.+++|+++|+||||+||+.+||+++|+ +++||+++++|||++|||||+|||+|||||+||++||..|
T Consensus 280 ~~~~~-~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLeEvprVredlGypPLVTPtSQiVGtQAvlNVl~G 358 (472)
T COG5016 280 KGLLE-PQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLTG 358 (472)
T ss_pred hhccC-ccccCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHHHhHHHHhhcCCCCccCchhhhhhHHHHHHHHhc
Confidence 6667 88999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCC-CCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDS-LKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~-~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
.+|+ .+++|+++|++|+||+||++++++++++||++ +++|+|||++.++|++++.
T Consensus 359 erYK---------~It~E~~~yv~G~YGrtPapi~~el~~~ilg~~~~~i~~RpADll~pe~~k~--------------- 414 (472)
T COG5016 359 ERYK---------VITKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCRPADLLEPELDKL--------------- 414 (472)
T ss_pred chhh---------HHHHHHHHHhccccCCCCCCCCHHHHHHHhCCCCCcccCChhhhcchHHHHH---------------
Confidence 9997 46999999999999999999999999999999 5899999999966655443
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++ ++.+ .| ..-.+|| ||+|+|||+++.+|++.|.+
T Consensus 415 --k~---e~~~-~~--------------------~~~~eeD-------VLtyalfp~va~~Fl~~r~~ 449 (472)
T COG5016 415 --KK---ELEE-LA--------------------IEEEEED-------VLTYALFPQVAKKFLEGREK 449 (472)
T ss_pred --HH---HHHH-Hh--------------------hhccccc-------chhhhhhHHHHHHHHhcccc
Confidence 33 2222 22 1123678 99999999999999999976
No 10
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.5e-113 Score=1017.88 Aligned_cols=449 Identities=31% Similarity=0.500 Sum_probs=427.3
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
.+++|+|+||||||||||+++|||+++|+++||+.||+ +|+++||+|||||||+|+||++|||||||+.+|+.+||++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~--~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~ 86 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDK--IGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR 86 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHh--cCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCc
Confidence 34689999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
+|||+||+|+|||++||||++++|++.|+++|||+|||||++||++||+.+++.+|++|+ ++++++||++ +|
T Consensus 87 lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~---sp-- 158 (468)
T PRK12581 87 LQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTT---SP-- 158 (468)
T ss_pred eeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEe---CC--
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999994 67
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
+|+++||++++++++++|||+|+||||+|+++|.++++||+++|+. +++||++|+|||+|||+||+++|++|||++||
T Consensus 159 -~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 159 -VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred -cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 7999999999999999999999999999999999999999999985 59999999999999999999999999999999
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVREL 974 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~ 974 (1427)
+|++|||+++|||++|+++++|+.+|+++++|+ ..+...+++|+++|..
T Consensus 237 ~ai~g~g~gagN~~tE~lv~~L~~~g~~tgiDl-------------------------------~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 237 TALSPFSEGTSQPATESMYLALKEAGYDITLDE-------------------------------TLLEQAANHLRQARQK 285 (468)
T ss_pred eeccccCCCcCChhHHHHHHHHHhcCCCCCcCH-------------------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6666778888999999
Q ss_pred cCC---CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHH
Q psy15244 975 YAP---FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMT 1049 (1427)
Q Consensus 975 Y~~---f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v 1049 (1427)
|.| |+ +...+.++++|.|||||||+|||++||+++|+ +|+||+++|++||++||||||||||||||||||+|||
T Consensus 286 y~~~~~~~-~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~dr~~ev~~e~~~V~~~lG~p~~VTP~Sqivg~qA~~nV 364 (468)
T PRK12581 286 YLADGILD-PSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLSQMVGTQAAMNV 364 (468)
T ss_pred hcccccCC-CccCCCCcceeeCCCCcchHHHHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCCEECChhHHHHHHHHHHH
Confidence 998 88 88999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCcccccccc
Q psy15244 1050 QEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLI 1129 (1427)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~ 1129 (1427)
++|++|+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++| |++++
T Consensus 365 ~~g~ry~---------~~~~ev~~~~~G~yG~~p~~~~~el~~~il~~~~~~~~rp~~~-----------l~p-~~~~~- 422 (468)
T PRK12581 365 ILGKPYQ---------MVSKEIKQYLAGDYGKTPAPVNEDLKRSQIGSAPVTTNRPADQ-----------LSP-EFEVL- 422 (468)
T ss_pred HcCCCch---------hCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCcccc-----------cCc-cHHHH-
Confidence 9999997 6899999999999999999999999999999999999999999 777 66555
Q ss_pred ChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCC
Q psy15244 1130 FPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKL 1206 (1427)
Q Consensus 1130 ~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 1206 (1427)
++ ++.+. ..++|| +|+|+|||+|+.+|+++|++|||+.++
T Consensus 423 ----r~---~~~~~-----------------------~~~~ed-------vl~~~l~p~v~~~f~~~~~~~~~~~~~ 462 (468)
T PRK12581 423 ----KA---EVADL-----------------------AQTDED-------VLTYALFPSVAKPFLTTKYQTDDVIKV 462 (468)
T ss_pred ----HH---HHhhh-----------------------cCCHHH-------HHHHHcCcHHHHHHHHHHHhcCCHHHH
Confidence 55 33221 146788 999999999999999999999998764
No 11
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=9.4e-112 Score=979.43 Aligned_cols=452 Identities=47% Similarity=0.808 Sum_probs=443.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
||+||||+||||||+|+||+|+++|+++|+|||++|..++|.++||++|.|+ +.+..++|++++.|++.|++.|+|+||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iG-papaaeSYL~~dkIi~Aa~~tGA~AIH 79 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIG-PAPAAESYLDIDKIIDAARRTGAQAIH 79 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcC-CCchhhhhccHHHHHHHHHHhCccccc
Confidence 6899999999999999999999999999999999999999999999999999 778889999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||||||++|+++|+++|+.||||++.+++.|+||..+|.++.++|+|+.||+.+.+.+.+++..+++++||||+||+
T Consensus 80 PGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKA 159 (645)
T COG4770 80 PGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159 (645)
T ss_pred CCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.||||||||++.+++|+.++|+.+++|+.++||++.+|||+|++.|||||+|+++|+|||++||+|||||+||||||++
T Consensus 160 saGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVI 239 (645)
T COG4770 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVI 239 (645)
T ss_pred ccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
|++|+|.|++++|++|.+.|+++++++||.|++||||++|.++.|||||||+|+|+|||+||++||+|||+||||+|.|+
T Consensus 240 EEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Ge 319 (645)
T COG4770 240 EEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGE 319 (645)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+|+ +.|++++.+||||++|||+|||..+|.|++|++..|+.|.++++|+|++ +..|+.|+++|||||+|+|+||.|
T Consensus 320 kL~---~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsG-V~~G~~Is~~YDpMiAKLi~~G~d 395 (645)
T COG4770 320 KLP---FTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSG-VREGDEISPFYDPMIAKLIVHGAD 395 (645)
T ss_pred cCC---cccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccC-cccCCccccccchHHHHHhhcCCC
Confidence 985 7899999999999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhcCC
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLERNS 513 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~~~ 513 (1427)
|++|+++|.+||+++.|.|+.||++||..++.||+|+.| +.+|.||.++ +++|...+
T Consensus 396 R~eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g-~~~T~~i~r~~~~~~~~~~ 453 (645)
T COG4770 396 REEALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGG-DLDTGFIAREIEDLFAPAP 453 (645)
T ss_pred HHHHHHHHHHHHHhhEecCccccHHHHHHHhcCcccccC-CCcceeeeecccccccCCC
Confidence 999999999999999999999999999999999999999 9999999998 88884433
No 12
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.9e-110 Score=1003.16 Aligned_cols=444 Identities=31% Similarity=0.490 Sum_probs=422.9
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|+|+||||||||||++++||+++||++||+.||+ +|+++||+|||||||+|+||++|||||||+.+|+.+||+++|
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~--~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lq 80 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDN--AGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQ 80 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHh--cCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEE
Confidence 579999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||+|++||++||||++++||+.|+++|+|+||||+++||++|++.+++.++++|. +++++||||. +| +
T Consensus 81 mL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~---~~~~~i~yt~---sp---~ 151 (499)
T PRK12330 81 MLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK---HAQGTICYTV---SP---I 151 (499)
T ss_pred EEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC---eEEEEEEEec---CC---C
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999994 56 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
||++||+++++++.++|||+|+||||+|+++|.++++||++||+++| ++||++|||||+|+|+||+++|++||||+||+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+++|||++|+++++|+.+|+++++|+ ..+...++||.++|..|
T Consensus 232 ai~Glg~~aGn~atE~vv~~L~~~g~~tgiDl-------------------------------~~L~~i~~~~~~vr~~y 280 (499)
T PRK12330 232 AISSMSLGPGHNPTESLVEMLEGTGYTTKLDM-------------------------------DRLLKIRDHFKKVRPKY 280 (499)
T ss_pred ecccccccccchhHHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66667788899999999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
.+|+ +.+.+.+..++.||+||||+||+.+||+++|+ +|+||+++|++||++||||||||||||||||||+|||++|
T Consensus 281 ~~~~-~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~Sqivg~qA~~nv~~g- 358 (499)
T PRK12330 281 KEFE-SKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVFNVLMG- 358 (499)
T ss_pred hccc-ccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHHcC-
Confidence 9999 88999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHh--CCCCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVL--DSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l--~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
+|+ .+|+||++|++|+||+||+|||++++++|| +|++++++||+++ ++|. |+++
T Consensus 359 ry~---------~~~~e~~~~~~G~yG~~p~~~~~e~~~~~~~~~~~~~~~~rp~~~-----------l~p~-~~~~--- 414 (499)
T PRK12330 359 RYK---------VLTGEFADLMLGYYGETPGERNPEVVEQAKKQAKKEPITCRPADL-----------LEPE-WDKL--- 414 (499)
T ss_pred ccc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHhhCCCCCCcCChhhh-----------cCch-HHHH---
Confidence 774 579999999999999999999999999996 6899999999999 6664 5555
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhcc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEF 1200 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 1200 (1427)
++ ++.+.+| ...++|| +|+|+|||+|+.+|+++|+++
T Consensus 415 --~~---~~~~~~~--------------------~~~~~ed-------vl~y~l~p~v~~~f~~~~~~~ 451 (499)
T PRK12330 415 --RA---EALALEG--------------------CDGSDED-------VLTYALFPQVAPKFFATRAEG 451 (499)
T ss_pred --HH---HHHHhcc--------------------CCCCHHH-------HHHHHcCcHHHHHHHHHHHhc
Confidence 66 5555555 3468899 999999999999999999864
No 13
>KOG0238|consensus
Probab=100.00 E-value=2.4e-107 Score=924.82 Aligned_cols=447 Identities=44% Similarity=0.769 Sum_probs=437.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCC
Q psy15244 60 ILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYG 139 (1427)
Q Consensus 60 VLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~g 139 (1427)
|||+||||||+|++|+|++||+++|+|||+.|+.++|..+||++|+++ +.+...+|++.+.|++.|++.++++||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig-~a~~~~SYL~~~~I~~aa~~tgaqaihPGYG 79 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIG-PAPAAQSYLRMDKIIDAAKRTGAQAIHPGYG 79 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecC-CCchhhhhhhHHHHHHHHHhcCCceecCCcc
Confidence 699999999999999999999999999999999999999999999999 6677899999999999999999999999999
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 140 FLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 140 flsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
|||||.+|+++|+++||.|+||++.+++.++||...|++++++|||+.||+++...|.+++.+.++++|||||||+..||
T Consensus 80 FLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GG 159 (670)
T KOG0238|consen 80 FLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGG 159 (670)
T ss_pred ccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEcc
Q psy15244 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAP 299 (1427)
Q Consensus 220 GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aP 299 (1427)
||+|||++.+++|+++.++.+++|+.++||++.+|+|+||+++||++||+++|++||.++|+|||||+||||||++|++|
T Consensus 160 GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaP 239 (670)
T KOG0238|consen 160 GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAP 239 (670)
T ss_pred CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcc
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTE 379 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~ 379 (1427)
+|.++++.|.+|.++|+++++++||.|++||||++|+.++|||+|||+|+|+|||+||++||+||++||||+|.|++|+
T Consensus 240 ap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp- 318 (670)
T KOG0238|consen 240 APNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLP- 318 (670)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCC-CCcccccCCCcCCCceecccCccceEEEEEEcCCHHH
Q psy15244 380 LGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPA-SIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKS 458 (1427)
Q Consensus 380 l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~-~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~e 458 (1427)
++|++++.+|||++||||||||.++|+|.+|++..|..|. .+++|+| .++++|+.|+++|||||+|+++||.||++
T Consensus 319 --~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvd-tgV~~g~~vs~~YDpmiaKlvvwg~dR~~ 395 (670)
T KOG0238|consen 319 --LKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVD-TGVRSGDEVSIHYDPMIAKLVVWGKDREE 395 (670)
T ss_pred --CCcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeee-cCcccCCcccccccchheeeeEecCCHHH
Confidence 8899999999999999999999999999999999999885 7899999 45799999999999999999999999999
Q ss_pred HHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhcC
Q psy15244 459 SCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLERN 512 (1427)
Q Consensus 459 A~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~~ 512 (1427)
|+.||.++|+++.|+|+.|||+||+.|+.||+|..| +++|.||++| ++||...
T Consensus 396 Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g-~V~T~fi~~~~~elf~~~ 449 (670)
T KOG0238|consen 396 ALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKG-NVSTKFIPEHQPELFAPE 449 (670)
T ss_pred HHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcC-ccccccchhcCccccCcc
Confidence 999999999999999999999999999999999999 9999999999 8888763
No 14
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.3e-104 Score=949.39 Aligned_cols=439 Identities=33% Similarity=0.537 Sum_probs=414.9
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+||+++++|+++||++||+.|++ +|+++||+||||+||+|+||++|+|||+++.+++.+||+++||
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~--~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDR--MGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHH--cCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCC
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKY 817 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~ 817 (1427)
|+||.|.+||++||+|++++|+++|+++|+|+||||+++||++|++.++++++++|. ++++++||+. +| ++
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p---~~ 150 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA---HVQGAISYTV---SP---VH 150 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC---EEEEEEEecc---CC---CC
Confidence 999999999999999999999999999999999999999999999999999999999 9999999993 46 89
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 818 SLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 818 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++|||++||+|+
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCC
Q psy15244 898 DSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAP 977 (1427)
Q Consensus 898 ~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~ 977 (1427)
+|||+++|||++|+++++|+.+|+++++|+ ..+...++||+++++.|.+
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~~tgiDl-------------------------------~~L~~~~~~~~~vr~~y~~ 278 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGKETDFDR-------------------------------KALKFLVEYFTKVREKYSE 278 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCCCCCcCH-------------------------------HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 6666778888889999999
Q ss_pred CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCCh
Q psy15244 978 FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSY 1055 (1427)
Q Consensus 978 f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~ 1055 (1427)
|+ +.+.+.+++||.|||||||+|||++||+++|+ +|+||+++|++||++|||||||||+||||||||+|||.+|.+|
T Consensus 279 ~~-~~~~~~~~~v~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~Nvl~g~r~ 357 (467)
T PRK14041 279 YD-VGMKSPDSRILVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTSQIVGVQAVLNVLTGERY 357 (467)
T ss_pred cC-CCCCCCCcCeeeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChhHHHHHHHHHhhcChhhe
Confidence 98 88899999999999999999999999999999 9999999999999999999999999999999999999877666
Q ss_pred hhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHH
Q psy15244 1056 RDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATK 1135 (1427)
Q Consensus 1056 ~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~ 1135 (1427)
+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++|. ++++ ++
T Consensus 358 ~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~il~~~~~~~~rp~~~-----------~~p~-~~~~-----~~ 411 (467)
T PRK14041 358 K---------RVTNETKNYVKGLYGRPPAPIDEELMKKILGDEKPIDCRPADL-----------LEPE-LEKA-----RK 411 (467)
T ss_pred e---------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhc-----------cCch-HHHH-----HH
Confidence 4 7999999999999999999999999999999999999999999 6663 3333 44
Q ss_pred HHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1136 KFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1136 ~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++|. ...++|| +|+|+|||+++.+|++.|++
T Consensus 412 -------~~~~-------------------~~~~~e~-------~l~y~~~p~v~~~f~~~~~~ 442 (467)
T PRK14041 412 -------ELGI-------------------LAETDED-------LLIYVILGEVGKKFLKKKYE 442 (467)
T ss_pred -------Hhcc-------------------cCCCHHH-------HHHHHcCcHHHHHHHHhccc
Confidence 3341 1257788 99999999999999999965
No 15
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=7.8e-104 Score=946.33 Aligned_cols=440 Identities=32% Similarity=0.579 Sum_probs=411.8
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|.|+|||||||+||+++++|+++||++||+.|++ +|+++||+|||||||+|+||++|+|||+++.+++.+||+++|
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~--~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDN--AGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHH--cCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEE
Confidence 579999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|. ++++++||+. +| +
T Consensus 80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~---~v~~~i~~t~---~p---~ 150 (448)
T PRK12331 80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG---HAQVAISYTT---SP---V 150 (448)
T ss_pred EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---eEEEEEEeec---CC---C
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999993 45 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++|||++||+|
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 9999999999999999999999999999999999999999999999 599999999999999999999999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcC
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYA 976 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~ 976 (1427)
++|||+++|||++|+++++|+.+|+++++|++. +...++||.++++.|.
T Consensus 230 v~glg~gaGN~~tE~lv~~L~~~g~~tgidl~~-------------------------------L~~~~~~~~~~r~~y~ 278 (448)
T PRK12331 230 ISPFAGGTSQPATESMVAALQDLGYDTGLDLEE-------------------------------LSEIAEYFNPIRDHYR 278 (448)
T ss_pred ccccCCCcCCHhHHHHHHHHHhcCCCCCCCHHH-------------------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999944 4555666667777776
Q ss_pred C---CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHc
Q psy15244 977 P---FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQE 1051 (1427)
Q Consensus 977 ~---f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~ 1051 (1427)
. ++ +.+.+.++++|.|||||||+||+++||+++|+ +|+||+++|++||++|||||||||+||||||||+|||.+
T Consensus 279 ~~~~~~-~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~ 357 (448)
T PRK12331 279 EEGILN-PKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNVIS 357 (448)
T ss_pred hhccCC-cccccCCcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHhc
Confidence 4 44 67788999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1052 KLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
|.+|+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++| |++++
T Consensus 358 g~r~~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p-~~~~~--- 413 (448)
T PRK12331 358 GERYK---------MVPNEIKDYVRGLYGRPPAPIAEEIKKKIIGDEEVITCRPADL-----------IEP-QLEKL--- 413 (448)
T ss_pred chhhc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhc-----------CCc-cHHHH---
Confidence 76664 6999999999999999999999999999999999999999999 777 66665
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++ ++.+. . .++|| +|+|+|||+|+.+|+++|++
T Consensus 414 --~~---~~~~~-~----------------------~~~e~-------~l~y~~~p~v~~~~~~~~~~ 446 (448)
T PRK12331 414 --RE---EIAEY-A----------------------ESEED-------VLSYALFPQQAKDFLGRRED 446 (448)
T ss_pred --HH---HHHHh-c----------------------CCHHH-------HHHHHcCcHHHHHHHHHhhc
Confidence 66 33322 1 35688 99999999999999999964
No 16
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=2.2e-90 Score=822.32 Aligned_cols=444 Identities=49% Similarity=0.850 Sum_probs=433.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|||++|.+++|+|+++|+++|+||+++|..+.|..++|++++++ +....++|+|++.++..|++.++|+||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~-~~~~~~syl~i~~ii~~a~~~gadai~ 79 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIG-PAPSADSYLNIDAIIAAAEETGADAIH 79 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcC-CccchhhhhhHHHHHHHHHhcCCceEc
Confidence 6899999999999999999999999999999999999999999999999998 677789999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||+|||+.|+++|+++|+.|+||++++++.|+||..+|++++++|||+||++.+.+.+.+++.++++++||||||||
T Consensus 80 pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa 159 (449)
T COG0439 80 PGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKA 159 (449)
T ss_pred ccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|||+|++.+||.+++..+++++...|+++.+++||||++++|+++|+++|++|+++++++|||++||+|||++
T Consensus 160 ~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvi 239 (449)
T COG0439 160 AAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVI 239 (449)
T ss_pred CCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.++++++||.|++|+||+++.+|+|||||||||+||+|++||++||+||+++||++++|+
T Consensus 240 eeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge 319 (449)
T COG0439 240 EEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGE 319 (449)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999997788999999999999999999999999999999999998
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.|+++..+||+++|||++|||.++|.|++|+++.+..|+++|||++ ...+.|+.|+++||||+||++++|.+
T Consensus 320 ~l~---~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d-~~~~~~~~i~~~yds~i~k~i~~~~~ 395 (449)
T COG0439 320 PLS---LKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVD-SGVYDGYRVPPYYDSMIGKVIVHGRT 395 (449)
T ss_pred CCC---CCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEE-eecccCcccCcchhhheeEEEEecCC
Confidence 764 67899999999999999999999999999999999999999999999 55789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|+.+|.++|.++.|+|++||++|++.++++++|.+| +++|+|++++
T Consensus 396 r~~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g-~~~t~~l~~~ 444 (449)
T COG0439 396 RDEAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAG-DLDTHFLETH 444 (449)
T ss_pred hHHHHHHHHHHHHheEecCccCChHHHHHHhcChHhhcC-Ccchhhhhhc
Confidence 999999999999999999999999999999999999999 9999999886
No 17
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=8.3e-87 Score=818.56 Aligned_cols=448 Identities=48% Similarity=0.841 Sum_probs=429.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|||++|++++++|+++|+++|++|+++|..+++.++||++++++ +.....+|+|++.|+++|+++++|+||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~-~~~~~~syld~~~i~~~a~~~~~daI~ 79 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIG-PAPPSKSYLNIERIIDVAKKAGADAIH 79 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcC-CCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999999999999999999999998 445567999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++||+.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp 159 (499)
T PRK08654 80 PGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKA 159 (499)
T ss_pred ECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999874447899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...|+++.+|+|+||++++|++||+++|++|+++++++|+|++|++||+++
T Consensus 160 ~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~i 239 (499)
T PRK08654 160 SAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLI 239 (499)
T ss_pred CCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceE
Confidence 99999999999999999999999999888888999999999999989999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++++++|.+.|.++++++||.|++||||+++ +|++||||||||+|++|++||++||+|++++|+++|+|.
T Consensus 240 e~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~ 318 (499)
T PRK08654 240 EEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGE 318 (499)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCC
Confidence 9999988999999999999999999999999999999997 577999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+|+ +.|+++..+||||+|||++|||.++|.|++|+|+.+++|+++|+|+|++ ++.|+.|+++|||++||||+||+|
T Consensus 319 ~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~-~~~g~~v~~~~ds~~ak~i~~g~~ 394 (499)
T PRK08654 319 ELS---FKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSG-VHMGYEIPPYYDSMISKLIVWGRT 394 (499)
T ss_pred CCC---CcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECc-ccCCCCcCCccCchhheeeEeCCC
Confidence 875 5677788899999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhh
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~ 510 (1427)
|++|++||.+||++++|+|++||++||++||+||+|++| +++|+||+++|+|+.
T Consensus 395 r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~ 448 (499)
T PRK08654 395 REEAIARMRRALYEYVIVGVKTNIPFHKAVMENENFVRG-NLHTHFIEEETTILE 448 (499)
T ss_pred HHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCC-CccchhhhcCHHHHH
Confidence 999999999999999999999999999999999999999 999999999988775
No 18
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=7.2e-82 Score=774.98 Aligned_cols=460 Identities=45% Similarity=0.800 Sum_probs=434.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++|++++++|+++|++++++++++|..+++.++||++|+++. . +..+|+|.+.|+++|+++++|+||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~-~-~~~~y~d~~~i~~~a~~~~~D~I~ 78 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGA-D-PLAGYLNPRRLVNLAVETGCDALH 78 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCC-C-chhhhcCHHHHHHHHHHHCCCEEE
Confidence 58999999999999999999999999999999999999999999999999973 2 348899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++|++.+++.|+++|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||
T Consensus 79 pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp 158 (472)
T PRK07178 79 PGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158 (472)
T ss_pred eCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999874457899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...|++.++++|+||++++|+++++++|++|+++++++++|++++++++++
T Consensus 159 ~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~ 238 (472)
T PRK07178 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLI 238 (472)
T ss_pred CCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceE
Confidence 99999999999999999999999998888888888899999999989999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.+++++|||.|++++||++|++|++||||||||+|++|+++++++|+|++++++++++|+
T Consensus 239 e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~ 318 (472)
T PRK07178 239 EIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGL 318 (472)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCC
Confidence 99999889999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.|..+..+||||+|||++|||.++|.|+.|+|..+..|+++|||+|. .++.|+.|+++|||++||||+||+|
T Consensus 319 ~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~-~~~~g~~v~~~~d~~~~~vi~~g~~ 394 (472)
T PRK07178 319 PLS---YKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDT-AIYTGYTIPPYYDSMCAKLIVWALT 394 (472)
T ss_pred CCC---CccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEe-cccCCCEeCcccCCccceEEEEcCC
Confidence 875 456777889999999999999999999999999999999999999994 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHH
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKIL 523 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~ 523 (1427)
|++|+++|.++|++++|+|++||++||+++|.||+|++| +++|+||+++++|+...... +++....
T Consensus 395 ~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~-~~~~~~~ 460 (472)
T PRK07178 395 WEEALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSG-QFNTSFVESHPELTNYSIKR-KPEELAA 460 (472)
T ss_pred HHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCC-CccchhHhcChhhhcCcccc-CHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999998775544 5544443
No 19
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=4.1e-80 Score=760.02 Aligned_cols=449 Identities=47% Similarity=0.823 Sum_probs=425.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++|++++++|+++|+++|++|+++|..+++.++||++|+++.. +..+|+|.+.|+++|+++++|+||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~--~~~~y~d~~~i~~~a~~~~iDaI~ 78 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTD--PIKGYLDVKRIVEIAKACGADAIH 78 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCC--chhcccCHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999999999999999999999732 348899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc-CCCHHHHHHHHHhcCCcEEEe
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP-VTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~-v~s~eea~~~a~~iGyPvVVK 214 (1427)
|||||++|+..+++.|++.|++|+||++++++.++||..+|++++++|||+||++... ..+.+++.++++++|||+|||
T Consensus 79 pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvK 158 (478)
T PRK08463 79 PGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILK 158 (478)
T ss_pred ECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999976322 357899999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++|+|+.++++|++
T Consensus 159 P~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~ 238 (478)
T PRK08463 159 ASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKV 238 (478)
T ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCce
Confidence 99999999999999999999999998888888889999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|++.++++++++|.+.+.++++++||.|++|+||+++++|++||||||||+|++|+++|++||+|++++++++++|
T Consensus 239 ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G 318 (478)
T PRK08463 239 IEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318 (478)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcC
Confidence 99999988999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcC
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
++++ +.+..+..+||||+|||++|||...|.|++|+|+.+..|.++++|+| .....|+.|+++|||++||+|++|.
T Consensus 319 ~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d-~~~~~g~~v~~~~d~~la~~i~~g~ 394 (478)
T PRK08463 319 EILD---LEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVD-SHIYKDYTIPPYYDSMLAKLIVKAT 394 (478)
T ss_pred CCCC---CccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEe-ccccCCCEeCcccccceeEEEEECC
Confidence 9874 45666778899999999999999999999999999999989999999 4568899999999999999999999
Q ss_pred CHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhc
Q psy15244 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLER 511 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~ 511 (1427)
|+++|++++.++|+++.|+|++||++||+++|.||+|++| +++|+||+++ ++|+..
T Consensus 395 ~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~ 451 (478)
T PRK08463 395 SYDLAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRG-YFDTSYIETHMQELLEK 451 (478)
T ss_pred CHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCC-CccchhhhhCchhhccc
Confidence 9999999999999999999999999999999999999999 9999999999 677754
No 20
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=7.5e-80 Score=756.16 Aligned_cols=448 Identities=43% Similarity=0.755 Sum_probs=424.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++||||||+|||+++++++++|+++|+++++++++.|..+++.++||+.++++ +.....+|+|++.|+++|+++++|+|
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~-p~~~~~~y~d~~~i~~~a~~~~~daI 81 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIG-PSHAAKSYLNPAAILAAARQCGADAI 81 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecC-CCCccccccCHHHHHHHHHHhCCCEE
Confidence 56999999999999999999999999999999999998899999999999886 34456789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+|||
T Consensus 82 ~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvK 161 (467)
T PRK12833 82 HPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIK 161 (467)
T ss_pred EECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999986446889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...|+++.++||+||++++|++|++++|++ +++++++++|++|++++++
T Consensus 162 p~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki 240 (467)
T PRK12833 162 AAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKI 240 (467)
T ss_pred ECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccE
Confidence 999999999999999999999999998888888998999999999988999999999976 6889999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.+.+|++.++++.+++|.+.+.++++++||.|++|+||++++ +|++||||||||+|++|+++++++|+|++++++++++
T Consensus 241 ~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~ 320 (467)
T PRK12833 241 LEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIAD 320 (467)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHC
Confidence 999998889999999999999999999999999999999985 6889999999999999999999999999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|++++ +.+.++..+|||++|||++|||.++|.|++|+++.+.+|.++|+|++ .+++.|+.|+++|||++||||+||
T Consensus 321 G~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d-~~~~~G~~v~~~~ds~l~~vi~~g 396 (467)
T PRK12833 321 GEPLR---FAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVD-SLLYPGYRVPPFYDSLLAKLIVHG 396 (467)
T ss_pred CCCCC---CCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEe-cceeCcCEeCCCcCcchheEEEEc
Confidence 99875 45677888999999999999999999999999999999999999999 567899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhh
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLL 509 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~ 509 (1427)
+|+++|++++.++|++++|+|++||++||+++|+||+|++| +++|+||+++ ++|+
T Consensus 397 ~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~ 452 (467)
T PRK12833 397 EDRAAALARAARALRELRIDGMKTTAPLHRALLADADVRAG-RFHTNFLEAWLAEWR 452 (467)
T ss_pred CCHHHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCC-CcccHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999 9999999987 4444
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=8.2e-76 Score=775.67 Aligned_cols=440 Identities=42% Similarity=0.729 Sum_probs=413.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+|||||+|||++|++++++|+++|++++++++++|..+++..+||++++++ +....++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~-~~~~~~sy~d~e~Il~~a~~~~idaIiP 79 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLG-GAPAAESYLDIDKILAAAKKTGAQAIHP 79 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcC-CCCcccCCCCHHHHHHHHHHHCCCEEEe
Confidence 589999999999999999999999999999999999999999999999987 4455678999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
||||++|+..+++.|++.|++|+||++++++.++||..+|++|+++|||++|++ ..+.+.+++.++++++|||+||||.
T Consensus 80 G~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~ 158 (1201)
T TIGR02712 80 GYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKST 158 (1201)
T ss_pred CCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999999998875 3678999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+||++|++.+||.++++.+.+.+...|++..++|||||++++|+++++++|++|++++++++||+++++++++++
T Consensus 159 ~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~ve 238 (1201)
T TIGR02712 159 AGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVE 238 (1201)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEE
Confidence 99999999999999999999999988777778888999999999889999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.+|++.++++.+++|.+.+.++++++||.|++|+||++++ +|++||||||||+|++|++++.++|+|++++++++++|+
T Consensus 239 e~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~ 318 (1201)
T TIGR02712 239 ETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGE 318 (1201)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCC
Confidence 9999889999999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CCccccccccCc--ccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 376 SLTELGLCQEKI--TPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 376 ~l~~l~l~q~~i--~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
+++ +.+... ...|+++++|+++|||.++|.|++|.++.+..|++ +|++ +++..|+.|+++||+++|+||++|
T Consensus 319 ~~~---~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~~--vrvd-~~v~~G~~V~~~~d~~la~vI~~g 392 (1201)
T TIGR02712 319 LPD---FASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPDD--VRVD-TWVETGTEVSPEYDPMLAKIIVHG 392 (1201)
T ss_pred CCC---ccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCCe--EEEe-ceecCCCEECCccCCCeEEEEEEE
Confidence 865 222222 46799999999999999999999999988877764 7888 578899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
.|+++|++++.++|++++|+|+.||++||++||.||+|++| +++|+||++.
T Consensus 393 ~~r~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~-~~~t~~l~~~ 443 (1201)
T TIGR02712 393 SDREDAILKLHQALAETRVYGIETNLDYLRSILSSETFRSA-QVSTRTLNSF 443 (1201)
T ss_pred CCHHHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCC-CccchhhhhC
Confidence 99999999999999999999999999999999999999999 9999999774
No 22
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.7e-75 Score=715.63 Aligned_cols=444 Identities=46% Similarity=0.817 Sum_probs=421.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|+++++++++.|..+++..+||+.+.++ +....++|+|.+.|+++|++.++|+||
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~-~~~~~~~y~~~~~i~~~~~~~~~d~i~ 79 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIG-PASSKDSYLNIQNIISATVLTGAQAIH 79 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeC-CCChhhcccCHHHHHHHHHHcCCCEEE
Confidence 5899999999999999999999999999999999888899999999999986 445567899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++|+..++..|+..|++|+||+++++..++||..+|++++++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP 159 (447)
T PRK05586 80 PGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKA 159 (447)
T ss_pred cCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853467899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++++|+.+++++++.
T Consensus 160 ~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~ 239 (447)
T PRK05586 160 SAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVL 239 (447)
T ss_pred CCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceE
Confidence 99999999999999999999999998888778888899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.+++++|||.|++++||++|++|++||+|||||++++|+++++++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~ 319 (447)
T PRK05586 240 EEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGE 319 (447)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCC
Confidence 99998889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.+.++...||++++||++|+|...|.|.+|++..+..|.+.++|++. ....|+.++++|||++|+||++|+|
T Consensus 320 ~l~---~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~-~~~~g~~v~~~~~~~~~~vi~~g~~ 395 (447)
T PRK05586 320 KLS---IKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDS-AVYSGYTIPPYYDSMIGKLIVYGKD 395 (447)
T ss_pred CCC---CcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeec-cccCCCccCCccCchhheeEEEcCC
Confidence 875 445667788999999999999999999999999999999999999994 5678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.+||+++.|+|++||++||+++|.||+|++| +++|+||++|
T Consensus 396 ~~~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~ 444 (447)
T PRK05586 396 REEAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKG-TYDTSFIEKK 444 (447)
T ss_pred HHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCC-ccccHHhHhh
Confidence 999999999999999999999999999999999999999 9999999875
No 23
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=6.1e-74 Score=702.72 Aligned_cols=444 Identities=43% Similarity=0.790 Sum_probs=419.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|++++++++++|..+++..+||+++.++ +.....+|+|++.|+++|+++++|+||
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~-~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIG-PAPSAKSYLNIPNIISAAEITGADAIH 79 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcC-CCCchhchhCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999998888889999999999986 334557899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP 159 (449)
T TIGR00514 80 PGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKA 159 (449)
T ss_pred eCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999854467899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...++++.++||+||++++|++++++.|++|+++++++++|++++++++++
T Consensus 160 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~ 239 (449)
T TIGR00514 160 TAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLL 239 (449)
T ss_pred CCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceE
Confidence 99999999999999999999999888777667778899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.+++++|||.|++|+||+++++|++||||||||++++|++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~ 319 (449)
T TIGR00514 240 EEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGE 319 (449)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCC
Confidence 99998889999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+..+..+|+|+++||++|||...|.|.+|.+..+..|.++|+|++ .+..+|+.++++|||++|+||++|+|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~-~~~~~G~~v~~~~~~~lg~vi~~g~~ 395 (449)
T TIGR00514 320 PLS---LKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWD-SHVYSGYTVPPYYDSMIGKLITYGKT 395 (449)
T ss_pred CCC---CccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeec-cCccCCCEeCccccccceEEEEEcCC
Confidence 875 33556667899999999999999999999999999999999999999 56789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.+||++++|+|++||++||+++|.||+|++| +++|+||++|
T Consensus 396 ~~ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~-~~~t~~~~~~ 444 (449)
T TIGR00514 396 REVAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHG-GTNIHYLEKK 444 (449)
T ss_pred HHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCC-ceeehhHhhh
Confidence 999999999999999999999999999999999999999 9999999886
No 24
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=1e-72 Score=691.78 Aligned_cols=443 Identities=44% Similarity=0.782 Sum_probs=416.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+.||||||+|||+++++++++|+++|++++++++.+|..+++.++||+++.++ +....++|+|++.|+++|+++++|+|
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~-~~~~~~~y~~~~~l~~~~~~~~~D~i 80 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIG-GAKSSESYLNIPAIISAAEIFEADAI 80 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeC-CCchhcccCCHHHHHHHHHHcCCCEE
Confidence 34899999999999999999999999999999999999999999999999997 33445789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
|||+|+++|+..+++.|+++|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|||
T Consensus 81 ~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvK 160 (445)
T PRK08462 81 FPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160 (445)
T ss_pred EECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999976446789999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...++++.+++|+||++++|+++++++|.+|+++++++++|+.++++++.
T Consensus 161 P~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~ 240 (445)
T PRK08462 161 AAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKL 240 (445)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccce
Confidence 99999999999999999999999988877777788889999999998899999999998899999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|+..++++.+++|.+.+.++++++||.|++|+||+++++|++||||||||++++++++++++|+|++++++++++|
T Consensus 241 ~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G 320 (445)
T PRK08462 241 IEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEG 320 (445)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcC
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
++++. +.....+|+|+++|+++++|. .|.|.+|.+..+..|.+.++|++ .....|+.++++|||++|+||++|+
T Consensus 321 ~~l~~----~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~-~~~~~g~~v~~~~~~~lg~vi~~g~ 394 (445)
T PRK08462 321 EELPS----QESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMD-SHAYAGYVVPPYYDSMIGKLIVWGE 394 (445)
T ss_pred CCccc----ccccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEc-cCcCCCCEeChhhccCccEEEEEcC
Confidence 98753 234457899999999999995 58999999999988988899999 4567899999999999999999999
Q ss_pred CHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
|+++|++++.+++++++|+|++|||+||+++|.||+|++| +++|+||++|
T Consensus 395 ~~~ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 444 (445)
T PRK08462 395 DRNRAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINN-KYDTKYLEEH 444 (445)
T ss_pred CHHHHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCC-ceechhhhhc
Confidence 9999999999999999999999999999999999999999 9999999876
No 25
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=7.1e-71 Score=676.95 Aligned_cols=444 Identities=45% Similarity=0.824 Sum_probs=417.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|+++++++++.|..+++.++||+.+.++ +....++|+|.+.|+++|+++++|+|+
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~-~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIG-PAPSKKSYLNIPAIISAAEITGADAIH 79 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeC-CCCcccccCCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999999888888999999999876 334457899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|+..++..|++.|++|+||+++++..++||..+|++++++|||+||++...+.+.+++.++++.+|||+||||
T Consensus 80 p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP 159 (451)
T PRK08591 80 PGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKA 159 (451)
T ss_pred ECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999753367899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+..++...++++.+++|+||++++|+++++++|++|+++++++++|+.++++++..
T Consensus 160 ~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~ 239 (451)
T PRK08591 160 TAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVL 239 (451)
T ss_pred CCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEE
Confidence 99999999999999999999999988877777888899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.++++++||.|++|+||+++++|++||||||||++++|++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~ 319 (451)
T PRK08591 240 EEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGE 319 (451)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCC
Confidence 99998889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+.....+|+|+++||++|+|...|.|.+|.+..+..|.++++|++ .....|+.+++++||++|+|+++|+|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~-~~~~~g~~v~~~~~~~lg~vi~~g~~ 395 (451)
T PRK08591 320 PLS---IKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVD-SAVYTGYTIPPYYDSMIGKLIVHGET 395 (451)
T ss_pred CCC---CcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeec-ccccCCCCcCccccCcceEEEEEcCC
Confidence 875 23445567899999999999999999999999999999999999998 45678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.++|++++|+|++||++||++||.||+|++| +++|+||+++
T Consensus 396 ~~~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~ 444 (451)
T PRK08591 396 REEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAG-DYNIHYLEKK 444 (451)
T ss_pred HHHHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCC-CcccHHHHhh
Confidence 999999999999999999999999999999999999999 9999999887
No 26
>KOG0368|consensus
Probab=100.00 E-value=4.2e-68 Score=650.90 Aligned_cols=444 Identities=33% Similarity=0.555 Sum_probs=405.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEecCCC--ccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEM---------GIKSVGIYSEQD--KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~el---------Gi~~vav~s~~d--~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
+.++||||||.|-.|+..+|+.|+- -++.|++.+++| .++.+.++||+.+.+| +...-..|.|++.|+
T Consensus 52 rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevP-gGtNnNNyANVdlIv 130 (2196)
T KOG0368|consen 52 RVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVP-GGTNNNNYANVDLIV 130 (2196)
T ss_pred ceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCC-CCCCCCCcccHHHHH
Confidence 6689999999999999999999874 355666666655 4677889999988887 667788999999999
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc------------
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT------------ 191 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~------------ 191 (1427)
++|++..+|||++|||..||||.+.+++.+.||.|+||+..+|..+|||...--+++.+|||+.||+.
T Consensus 131 diAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~ 210 (2196)
T KOG0368|consen 131 DIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKT 210 (2196)
T ss_pred HHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ------------ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeec
Q psy15244 192 ------------EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYI 259 (1427)
Q Consensus 192 ------------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyI 259 (1427)
+.+.+.+|..+.++.+|||+|||++.||||+|+|.|++.||+...|+++..| +.+.++|+.+..
T Consensus 211 ~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a 286 (2196)
T KOG0368|consen 211 NLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMKLA 286 (2196)
T ss_pred CeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeeecc
Confidence 2356889999999999999999999999999999999999999999998876 447899999999
Q ss_pred cCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CC
Q psy15244 260 DRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DD 338 (1427)
Q Consensus 260 eggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG 338 (1427)
.+.||+|||+++|.+|+++.++.||||+||||||++|++|+...+.+..++|.+.|+++++.+||.+++|||+++.+ +|
T Consensus 287 ~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~ 366 (2196)
T KOG0368|consen 287 DQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG 366 (2196)
T ss_pred cCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999997 89
Q ss_pred cEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccc-------c-----------cccCcccceEEEEEEeec
Q psy15244 339 NFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELG-------L-----------CQEKITPQGCAIQCHLRT 400 (1427)
Q Consensus 339 ~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~-------l-----------~q~~i~~~g~ai~~ri~a 400 (1427)
+|||+|.|||+|+|||.||+++|+||..+|+++|+|.||..++ + .+..+.++||+|.|||+.
T Consensus 367 ~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITs 446 (2196)
T KOG0368|consen 367 EYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITS 446 (2196)
T ss_pred cEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeec
Confidence 9999999999999999999999999999999999999997552 1 123457899999999999
Q ss_pred CCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc-cccCH
Q psy15244 401 EDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTNL 479 (1427)
Q Consensus 401 edp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G-v~tni 479 (1427)
|||..+|.|++|+|..+..++...+- ....+..|..|..+-||.+|+++++|+||++|++.|.-||+++.||| .+|++
T Consensus 447 EdPddgFkPSsG~v~eLnFrSssnvW-gYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~V 525 (2196)
T KOG0368|consen 447 EDPDDGFKPSSGTVQELNFRSSSNVW-GYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTV 525 (2196)
T ss_pred cCCCCCcCCCCCeeEEeccCCCCCee-EEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCchH
Confidence 99999999999999987665544332 11335678889999999999999999999999999999999999999 79999
Q ss_pred HHHHhhcCCcccccCCccccccccCc
Q psy15244 480 PFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 480 ~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+||.+||...+|.++ .++|+|+|+.
T Consensus 526 eYLI~LLet~dF~~N-~i~TgWLD~~ 550 (2196)
T KOG0368|consen 526 EYLIDLLETEDFESN-KIDTGWLDKR 550 (2196)
T ss_pred HHHHHHHHhhhhhhc-cCcchhHHHH
Confidence 999999999999999 9999999875
No 27
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.3e-60 Score=586.27 Aligned_cols=443 Identities=43% Similarity=0.788 Sum_probs=404.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|+|+++++++++|+++|+++++++++.+..+.+..+||+.+.++ +.....+|.|.+.|+++|+++++|+|+
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~-~~~~~~~~~d~~~l~~~~~~~~id~I~ 79 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIG-GPRVQESYLNLEKIIEIAKKTGAEAIH 79 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcC-CCCccccccCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999988888888888999999886 333356889999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|+..++..++..|++++||++++++.++||..+|++|+++|||+||+....+.+.+++.++++.+|||+||||
T Consensus 80 p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP 159 (450)
T PRK06111 80 PGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKA 159 (450)
T ss_pred eCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999998999999999999999999999999999999999999999999732256899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+..++...++++++++|+||++++|++++++.+++|+++.++.++|+.++++++..
T Consensus 160 ~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 239 (450)
T PRK06111 160 SAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVI 239 (450)
T ss_pred CCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceE
Confidence 99999999999999999999999876665556777899999999988999999999988999999999999998888888
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.++++++||.|++|+||+++++|++||||||||+++++++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~ 319 (450)
T PRK06111 240 EEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGE 319 (450)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCC
Confidence 88898888999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+......++++..+++++++. .+.|..|.+..+..+...+++++ .+...|+.+++.+++++|+|+++|.|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~-~~~~~G~~v~~~~~~~lg~vi~~g~~ 394 (450)
T PRK06111 320 KLS---FTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHD-HAVENGVTVTPFYDPMIAKLIAHGET 394 (450)
T ss_pred CCC---CccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEE-ecccCCCEeChhhcccceEEEEEeCC
Confidence 875 33445566788999999998874 46789999877766666778876 45678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|.+++.++++.++|+|++||+++|+.+|.||+|++| .++|+|++..
T Consensus 395 ~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 443 (450)
T PRK06111 395 REEAISRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAG-GYTTGFLTKQ 443 (450)
T ss_pred HHHHHHHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCC-cccchHHhhh
Confidence 999999999999999999999999999999999999999 9999999664
No 28
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=3.2e-58 Score=548.00 Aligned_cols=333 Identities=20% Similarity=0.236 Sum_probs=308.9
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+|||||||+|++ ++.|++++|++|++.|++ +||+.||+|.++ .++++|+.++.+++..++..+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~-~~~~s~e~k~~ia~~L~~--~GV~~IE~G~p~--------~~~~~~e~i~~i~~~~~~~~i 70 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTP-GVVFTNEEKLAIARMLDE--IGVDQIEAGFPA--------VSEDEKEAIKAIAKLGLNASI 70 (378)
T ss_pred CCeeEEEeCCCCccCcCC-CCCCCHHHHHHHHHHHHH--hCCCEEEEeCCC--------cChHHHHHHHHHHhcCCCeEE
Confidence 567999999999999998 589999999999999999 799999998665 477889999999988888888
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
.+|.|+ ..+++++|.++|++.+++|.++||+ +++..+++++++.|. .+.+
T Consensus 71 ~~~~r~-------------~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~---~v~~ 134 (378)
T PRK11858 71 LALNRA-------------VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL---YVSF 134 (378)
T ss_pred EEEccc-------------CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEE
Confidence 888875 3556999999999999999999996 567789999999998 5543
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+ ++|.++++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||
T Consensus 135 ----~----~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN 205 (378)
T PRK11858 135 ----S----AEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATAN 205 (378)
T ss_pred ----E----eccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHH
Confidence 2 5678899999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhh
Q psy15244 882 TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHD 960 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~ 960 (1427)
+++|+++||++||+|++|||||+||++||+++++|+. .|+++++|+++|.++++++++.+|+++|++||+||.|+|+|+
T Consensus 206 ~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~ 285 (378)
T PRK11858 206 ALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHE 285 (378)
T ss_pred HHHHHHcCCCEEEEeeccccccccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhh
Confidence 9999999999999999999999999999999999994 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 961 VCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 961 ~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|+|.+++.|++..|+||+ |+..|..++++++++||.. +++..|+++|+ ..+++.+.+.+|++.
T Consensus 286 sGiH~~gi~k~~~~Ye~~~-P~~vG~~~~~~~g~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 351 (378)
T PRK11858 286 SGIHVDGVLKNPLTYEPFL-PEEVGLERRIVLGKHSGRH--ALKNKLKEYGIELSREELCELLEKVKEL 351 (378)
T ss_pred ccccHHHHhCCcccccccC-HHHcCCcccccccccccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 7788889999999999985 89999999999 667888888888875
No 29
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=1.1e-57 Score=541.94 Aligned_cols=331 Identities=18% Similarity=0.232 Sum_probs=305.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
.|.|+|||||||+|++ +++|++++|++|++.|++ +||+.||+|.++ .++++|+.++.+++..++..+.+
T Consensus 1 ~v~i~D~TLRDG~Q~~-~~~~s~~~k~~ia~~L~~--~Gv~~IEvG~p~--------~~~~~~e~i~~i~~~~~~~~i~~ 69 (365)
T TIGR02660 1 PVIINDTTLRDGEQAP-GVAFTAAEKLAIARALDE--AGVDELEVGIPA--------MGEEERAVIRAIVALGLPARLMA 69 (365)
T ss_pred CcEEEeCCCCCcCcCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHHHHHHHHHHHHcCCCcEEEE
Confidence 3789999999999998 489999999999999999 899999998665 36788999999999999999999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEEEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEATI 803 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~~i 803 (1427)
|.|+. .+.++.|.++|++.+++|.++|+. +++..+++++++.|. .+.
T Consensus 70 ~~r~~-------------~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~---~v~--- 130 (365)
T TIGR02660 70 WCRAR-------------DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL---FVS--- 130 (365)
T ss_pred EcCCC-------------HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC---EEE---
Confidence 98862 456899999999999999999984 456688999999998 544
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
+ ++++.++++++|++++++++.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||++
T Consensus 131 -~----~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANal 204 (365)
T TIGR02660 131 -V----GGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTL 204 (365)
T ss_pred -E----eecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHH
Confidence 2 26788899999999999999999999999999999999999999999999998 69999999999999999999
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH-HhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCL-ENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L-~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
+|+++||++||+|++|||||+||++||+++++| ...|+++++|+++|.++++++++.+|+++++++|++|.|+|+|++|
T Consensus 205 aA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sG 284 (365)
T TIGR02660 205 AAVRAGATHVNTTVNGLGERAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESG 284 (365)
T ss_pred HHHHhCCCEEEEEeeccccccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccc
Confidence 999999999999999999999999999999999 5679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|++++.|++..|+||+ |+..|..+++++++++|.. +++..|+++|+ ..+++.+.+.+|++.
T Consensus 285 iH~~~i~k~~~~Ye~~~-P~~vG~~~~~~i~~~SG~~--~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 348 (365)
T TIGR02660 285 IHVDGLLKDPRTYEPFD-PELVGRSRRIVIGKHSGRA--ALINALAQLGIPLSEEEAAALLPAVRAF 348 (365)
T ss_pred hhHHHHhCCcccCCCcC-HHHcCCeeEEEeEchhhHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 7888889999999999975 89999999999 667788888888765
No 30
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=2.2e-57 Score=538.20 Aligned_cols=330 Identities=18% Similarity=0.229 Sum_probs=305.2
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMI 738 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml 738 (1427)
|.|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|.++. ++++|+.++.+.+..+++.+++|
T Consensus 1 i~i~DtTLRDG~Q~~-~~~~s~~~k~~ia~~L~~--~Gv~~IEvG~p~~--------~~~~~e~i~~i~~~~~~~~v~~~ 69 (363)
T TIGR02090 1 VYIFDTTLRDGEQTP-GVSLTVEQKVEIARKLDE--LGVDVIEAGFPIA--------SEGEFEAIKKISQEGLNAEICSL 69 (363)
T ss_pred CEEEeCCCCCcCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChHHHHHHHHHHhcCCCcEEEEE
Confidence 579999999999997 589999999999999999 8999999987643 67899999999999999999999
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEE
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATIC 804 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~ 804 (1427)
+|+ ..+++++|.++|++.+++|.++||++ .+..+++++++.|. .++.++
T Consensus 70 ~r~-------------~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~---~v~~~~- 132 (363)
T TIGR02090 70 ARA-------------LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL---IVEFSA- 132 (363)
T ss_pred ccc-------------CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---EEEEEE-
Confidence 985 24569999999999999999999874 45678889999998 665432
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 805 YAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 805 ~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
+++++++++|+.++++++.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||+++
T Consensus 133 -------eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~-~~~l~~H~Hnd~GlA~AN~la 204 (363)
T TIGR02090 133 -------EDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENV-KLPISVHCHNDFGLATANSIA 204 (363)
T ss_pred -------eecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhccc-CceEEEEecCCCChHHHHHHH
Confidence 355699999999999999999999999999999999999999999999998 499999999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCD 963 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~ 963 (1427)
|+++||++||+|++|||+|+||++||+++++|+. .|+++++|+++|.++++++++.+|+++|++||++|.|+|+|++|+
T Consensus 205 A~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGi 284 (363)
T TIGR02090 205 GVKAGAEQVHVTVNGIGERAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGI 284 (363)
T ss_pred HHHCCCCEEEEEeeccccccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcch
Confidence 9999999999999999999999999999999997 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 964 YSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 964 ~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
|.+++.|++..|+||+ |+..|..+++++++++|.. +++..++++|+ ..+++.+.+.+|++.
T Consensus 285 H~~~i~k~~~~Ye~~~-P~~vG~~~~~~~g~~SG~~--~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 347 (363)
T TIGR02090 285 HVDGVIENPLTYEPIS-PEVVGNKRRIILGKHSGRH--AVEAKLKELGIKVTDEQLKEILKRIKEI 347 (363)
T ss_pred hHHHHcCCcccCCCCC-HHHcCCcceeechhhccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 7888889999999999985 89999999999 667788888888876
No 31
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=5.2e-56 Score=546.54 Aligned_cols=335 Identities=19% Similarity=0.240 Sum_probs=305.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+|||||||+|++. ..|++++|++|++.|++ +||+.||+|.++ .++.+|+.++.+.+..+++.+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~g-~~~s~e~K~~ia~~L~~--~Gv~~IE~G~p~--------~s~~d~~~v~~i~~~~~~~~i 70 (513)
T PRK00915 2 MDRVIIFDTTLRDGEQSPG-ASLTVEEKLQIAKQLER--LGVDVIEAGFPA--------SSPGDFEAVKRIARTVKNSTV 70 (513)
T ss_pred CCCcEEEECCCCcCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEcCCC--------CChHHHHHHHHHHhhCCCCEE
Confidence 3579999999999999996 78999999999999999 899999998764 377889999999988899999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHH----hcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCc
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLAS----QAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~----~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~ 797 (1427)
++|+|+. ...++++. ++|.+++++|.+.||++ .+..+++++++.|.
T Consensus 71 ~a~~r~~-------------~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~--- 134 (513)
T PRK00915 71 CGLARAV-------------KKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD--- 134 (513)
T ss_pred EEEccCC-------------HHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---
Confidence 9999864 22355555 78999999999999986 34678889999998
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ceEEEeecCC
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTHDM 874 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ipi~~H~Hnd 874 (1427)
.+ +|+ ++|.++++++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++.+|+ ++|++|||||
T Consensus 135 ~v----~f~----~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND 206 (513)
T PRK00915 135 DV----EFS----AEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHND 206 (513)
T ss_pred eE----EEE----eCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCC
Confidence 54 333 788889999999999999999999999999999999999999999999999975 9999999999
Q ss_pred cchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC----CCCCCCChhhHHHHHHHHHHHhCCCCCCCCc
Q psy15244 875 AGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT----DKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~----g~~tgidl~~L~~l~~~v~~~~g~~~~~~kp 950 (1427)
+|||+||+++|++|||++||+|++|||||+||++||+++++|+.. |+++++|+++|.++++++++.+|+++|+++|
T Consensus 207 ~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~P 286 (513)
T PRK00915 207 LGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKA 286 (513)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999999865 8999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCc-ccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAAS-SEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 951 ivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~-~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+||.|+|+|++|+|++++.|++..|+||+ |+..|.. ++++++++||.. ++...|+++|+ ..+++.+.+.+|+++
T Consensus 287 ivG~~aF~h~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~~i~lg~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 363 (513)
T PRK00915 287 IVGANAFAHESGIHQDGVLKNRETYEIMT-PESVGLKANRLVLGKHSGRH--AFKHRLEELGYKLSDEELDKAFERFKEL 363 (513)
T ss_pred ccChhHHHhccchhHHHHcCCcccccccC-HHHcCCcceEEEeccccCHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7777777 799999999984 99999999999 666788888888775
Q ss_pred c
Q psy15244 1028 L 1028 (1427)
Q Consensus 1028 l 1028 (1427)
-
T Consensus 364 ~ 364 (513)
T PRK00915 364 A 364 (513)
T ss_pred H
Confidence 3
No 32
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=1.2e-55 Score=538.46 Aligned_cols=331 Identities=19% Similarity=0.249 Sum_probs=303.5
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+|++ +..|++++|++|++.|++ +||+.||+|.++. ++.+|+.++.+.+...+..+.+
T Consensus 2 ~i~I~DtTLRDG~Q~~-g~~~s~e~K~~ia~~L~~--~Gv~~IE~G~p~~--------~~~d~e~v~~i~~~~~~~~i~a 70 (488)
T PRK09389 2 MVRILDTTLRDGEQTP-GVSLTPEEKLEIARKLDE--LGVDVIEAGSAIT--------SEGEREAIKAVTDEGLNAEICS 70 (488)
T ss_pred ceEEEeCCCCCcCCCC-CCCcCHHHHHHHHHHHHH--cCCCEEEEeCCcC--------CHHHHHHHHHHHhcCCCcEEEe
Confidence 4899999999999997 589999999999999999 8999999987653 6788999999998888889999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATI 803 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i 803 (1427)
|+|+. .++++++.++|++.+++|.+.|+++ .+..+++++++.|. .++..
T Consensus 71 ~~r~~-------------~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~---~v~~~- 133 (488)
T PRK09389 71 FARAV-------------KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL---IVELS- 133 (488)
T ss_pred ecccC-------------HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---EEEEE-
Confidence 99862 5569999999999999999999984 44567788888888 66543
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
.++.++++++|+.++++.+.++|+++|+||||+|.++|.+++++++.|++.+ ++||++|||||+|||+||++
T Consensus 134 -------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~-~v~l~~H~HND~GlAvANal 205 (488)
T PRK09389 134 -------GEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELV-KGPVSIHCHNDFGLAVANTL 205 (488)
T ss_pred -------EeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhc-CCeEEEEecCCccHHHHHHH
Confidence 2356799999999999999999999999999999999999999999999988 69999999999999999999
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
+|++|||++||+|++|||||+||++||+++++|+.. |+++++|++.|.++++++++.+|+++|+|+|+||.|+|+|++|
T Consensus 206 aAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sG 285 (488)
T PRK09389 206 AALAAGADQVHVTINGIGERAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESG 285 (488)
T ss_pred HHHHcCCCEEEEEcccccccccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcch
Confidence 999999999999999999999999999999999974 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|++++.|++..|+||+ |+..|..++++++++||.. +++..|+++|+ ..+++.+.+.+++++
T Consensus 286 iH~dgi~k~~~~Ye~~~-P~~vG~~~~~~lg~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 349 (488)
T PRK09389 286 IHVDGLLKDTETYEPIT-PETVGRERRIVLGKHAGRA--ALKAALKEMGIEVSDDQLNEIVSRVKEL 349 (488)
T ss_pred hhHHHHhCCcccCCCCC-HHHcCCcccccccccccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 7788888999999999985 89999999999 666777888887763
No 33
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=2.5e-55 Score=530.94 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=297.4
Q ss_pred ccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC-
Q psy15244 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN- 732 (1427)
Q Consensus 654 ~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~- 732 (1427)
.+.++|.|+|||||||+|++. ..|++++|++||+.|++ +|++.||+|.++. ++..++.++.+.+..++
T Consensus 80 ~~~~~V~I~DtTLRDGeQ~~g-v~fs~eeKi~Ia~~L~~--~GVd~IEvG~Pa~--------s~~e~e~i~~i~~~~~~~ 148 (503)
T PLN03228 80 PDKNYVRVLDTTLRDGEQSPG-GSLTPPQKLEIARQLAK--LRVDIMEVGFPGS--------SEEEFEAVKTIAKTVGNE 148 (503)
T ss_pred CCCCCeEEEeCCCCCCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHHhcccc
Confidence 346789999999999999985 78999999999999999 8999999987764 34456667778766543
Q ss_pred --------CceeeeecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHH
Q psy15244 733 --------IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGM 786 (1427)
Q Consensus 733 --------~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i 786 (1427)
..+..|.|. .++++++|.++ |++++.+|.+.|+++ .+..++
T Consensus 149 ~~~~~~l~~~i~a~~R~-------------~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V 215 (503)
T PLN03228 149 VDEETGYVPVICGIARC-------------KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSI 215 (503)
T ss_pred cccccccceEEeeeccc-------------CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334455554 23457788777 788999999999887 236688
Q ss_pred HHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---
Q psy15244 787 DAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP--- 863 (1427)
Q Consensus 787 ~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p--- 863 (1427)
++|++.|. . .+. |++||+++++++|+.++++++.++||++|+||||+|+++|.+++++|+.+++.+|
T Consensus 216 ~~Ak~~G~---~---~v~----f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~ 285 (503)
T PLN03228 216 RYAKSLGF---H---DIQ----FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGID 285 (503)
T ss_pred HHHHHcCC---c---eEE----eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 89999887 3 122 3488999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCCChhhHHHHHHHH
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGIDLHDVCDYSSYW 937 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgidl~~L~~l~~~v 937 (1427)
+++|++|||||+|||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|++.|.++++++
T Consensus 286 ~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V 365 (503)
T PLN03228 286 DIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMV 365 (503)
T ss_pred CceeEecccCCcChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999987 3788999999999999999
Q ss_pred HHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcC----cccEEEecCCCccHHHHHHHHHHCCC-
Q psy15244 938 RKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAA----SSEAYLYEIPGGQYTNLKFRTMSFGL- 1012 (1427)
Q Consensus 938 ~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~----~~~v~~~~~pGg~~snl~~ql~~~gl- 1012 (1427)
++++|+++++|||+||.|+|+|++|+|++++.|++..|+||+ |+..|. .+++++++++|.. +++..|+++|+
T Consensus 366 ~~~~g~~i~~~kPivG~naF~heSGIH~dgilK~p~tYe~~~-Pe~vG~~~~~~~~i~lgk~SG~~--av~~~l~~lG~~ 442 (503)
T PLN03228 366 QEYTGMYVQPHKPIVGANCFVHESGIHQDGILKNRSTYEILS-PEDIGIVKSQNSGIVLGKLSGRH--AVKDRLKELGYE 442 (503)
T ss_pred HHHhCCCCCCCCCcccHHHHHhccchhHHHHhCCcccccCCC-HHHhCCcccccceeecchHhhHH--HHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 666663 6789999999974 89999999999
Q ss_pred -CHHHHHHHHHHHHHHc
Q psy15244 1013 -DFEDVKRAYRTANFLL 1028 (1427)
Q Consensus 1013 -~~~ev~~~~~~v~~~l 1028 (1427)
..+++.+.+.++++..
T Consensus 443 ~~~~~~~~l~~~vk~~a 459 (503)
T PLN03228 443 LDDEKLNEVFSRFRDLT 459 (503)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 7788888998888763
No 34
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=9.4e-55 Score=531.91 Aligned_cols=332 Identities=17% Similarity=0.203 Sum_probs=298.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+|++. ..|++++|++|++.|++ +|++.||+|.++. ++.+++.++.+++..++..+++
T Consensus 1 ~v~I~DtTLRDG~Q~~g-~~~s~e~K~~ia~~L~~--~GV~~IEvG~p~~--------s~~d~e~v~~i~~~~~~~~i~a 69 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPG-ASLTVEEKLQIALALER--LGVDIIEAGFPVS--------SPGDFEAVQRIARTVKNPRVCG 69 (494)
T ss_pred CeEEEECCCCccCcCCC-CCcCHHHHHHHHHHHHH--cCCCEEEEECCCC--------CHHHHHHHHHHHHhCCCCEEEE
Confidence 47999999999999986 78999999999999999 7999999987664 4567888999988889899999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v 799 (1427)
|.|+. ...++++.++ +.+++++|.+.|+++ .+..+++++++.|. .+
T Consensus 70 l~r~~-------------~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~---~v 133 (494)
T TIGR00973 70 LARCV-------------EKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD---DV 133 (494)
T ss_pred EcCCC-------------HHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eE
Confidence 98863 3446777766 788999999999876 34567888888887 43
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---CceEEEeecCCcc
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHVHTHDMAG 876 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi~~H~Hnd~G 876 (1427)
.| ++||+++++++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++++| +++|++|||||+|
T Consensus 134 ----~f----~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 134 ----EF----SCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred ----EE----EcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 33 388999999999999999999999999999999999999999999999999987 4789999999999
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN----TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~----~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|++.|.++++++++.+|+++|+|||+|
T Consensus 206 lAvANalaAv~aGa~~vd~tv~GlGERaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~Piv 285 (494)
T TIGR00973 206 LAVANSLAAVQNGARQVECTINGIGERAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIV 285 (494)
T ss_pred hHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 999999999999999999999999999999999999999984 3889999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCc-CcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKA-ASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 953 G~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g-~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
|.|+|+|++|+|++++.|++..|+||+ |+..| ..++++++++||.. ++...|+++|+ ..+++.+.+.+|+++
T Consensus 286 G~~aF~h~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~~i~lg~~SG~~--~i~~~l~~~g~~l~~~~~~~~~~~vk~~ 360 (494)
T TIGR00973 286 GDNAFAHESGIHQDGVLKNKETYEIMS-PEDIGLTAEQLVLGKHSGRH--AFKDRLEELGFKLDDEELDKLFEKFKEL 360 (494)
T ss_pred cHhHHHhccchhHHHHhCCcccccCCC-HHHcCCcceeEEecccccHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 66666 45689999999984 99999999999 556688888888775
No 35
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=1.5e-54 Score=532.92 Aligned_cols=359 Identities=19% Similarity=0.173 Sum_probs=304.2
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHh-CCCCc
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL-IPNIP 734 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~-~p~~~ 734 (1427)
+++|+|+|||||||+|++. ++|++++|++|++.|++ +||+.||+|.|+. +++..+.++.+.+. +.+..
T Consensus 3 ~~~V~I~DtTLRDG~Q~~g-~~~s~e~Kl~ia~~L~~--~Gvd~IEvG~p~a--------s~~d~~~~~~i~~~~l~~~~ 71 (524)
T PRK12344 3 MERIELYDTTLRDGAQGEG-ISFSVEDKLRIARKLDE--LGVDYIEGGWPGS--------NPKDTEFFKRAKELKLKHAK 71 (524)
T ss_pred CCceEEEeCCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEcCCcC--------ChhHHHHHHHHHHhCCCCcE
Confidence 4679999999999999995 89999999999999999 8999999965432 23334445555543 35788
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+..|.|... -++..+. +..++.+.++|++++++|.+.|++| ++..+++++++.|. .++
T Consensus 72 i~~~~~~~~-~~i~~~~----d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~---~v~ 143 (524)
T PRK12344 72 LAAFGSTRR-AGVSAEE----DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR---EVI 143 (524)
T ss_pred EEEEeeccc-cCCCccc----HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC---eEE
Confidence 888887532 2333222 2347888999999999999999764 56688999999998 654
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
+. ..+++ |+++++++|++++++++.++|+++|+||||+|+++|.+++++|+.+++++ +++|++|||||+|||+|
T Consensus 144 ~~---~e~~~--Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~A 217 (524)
T PRK12344 144 FD---AEHFF--DGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVA 217 (524)
T ss_pred Ec---ccccc--ccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHH
Confidence 32 11111 46689999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CC--CCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchh
Q psy15244 881 TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TD--KRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGID 957 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g--~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f 957 (1427)
|+++|++|||++||+|++|||||+||++||+|+++|.. .| .+|++|++.|.++++++++++|+++++|+|+||.|+|
T Consensus 218 NslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F 297 (524)
T PRK12344 218 NSLAAVEAGARQVQGTINGYGERCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAF 297 (524)
T ss_pred HHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchh
Confidence 99999999999999999999999999999999999975 46 4589999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCC----HHHHHHHHHHHHHH--cCCC
Q psy15244 958 LHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD----FEDVKRAYRTANFL--LGDI 1031 (1427)
Q Consensus 958 ~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~----~~ev~~~~~~v~~~--lG~~ 1031 (1427)
+|++|+|++++.|++..|+||+ |+..|.+++++++++||. ++++.+|+++|+. .+++.+.+.++++. .|+
T Consensus 298 ~h~SGiH~dgi~k~~~~Ye~~~-P~~vG~~~~i~lg~~SG~--~~i~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~~~- 373 (524)
T PRK12344 298 AHKGGIHVSAVLKDPRTYEHID-PELVGNRRRVLVSELAGR--SNILAKAKELGIDLDKDDPRLKRLLERIKELEAEGY- 373 (524)
T ss_pred hhhccccHHHHhCCcccccCCC-HHHhCCcccccccchhhH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999 777788999999999996 6999999999993 45577777777654 334
Q ss_pred CccccchhhHHHHHHHHHH
Q psy15244 1032 IKCTPSSKVVADLAIFMTQ 1050 (1427)
Q Consensus 1032 ~~vTP~sq~vg~~a~~~v~ 1050 (1427)
+|.+.+|.|++.
T Consensus 374 -------~~~~~~~~~~~~ 385 (524)
T PRK12344 374 -------QFEAAEASFELL 385 (524)
T ss_pred -------EEechHHHHHHH
Confidence 666677766554
No 36
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=1.1e-54 Score=535.60 Aligned_cols=346 Identities=15% Similarity=0.160 Sum_probs=303.7
Q ss_pred cccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH
Q psy15244 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA 724 (1427)
Q Consensus 645 ~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~ 724 (1427)
-|+.+...+++.++|.|+|||||||+|++. ..|++++|++|++.|++ +||+.||++.+ +.++++|+.++
T Consensus 73 ~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g-~~~s~eeKl~Ia~~L~~--lGVd~IEvGfP--------~~Sp~D~e~vr 141 (632)
T PLN02321 73 RPEYIPNRIDDPNYVRIFDTTLRDGEQSPG-ATLTSKEKLDIARQLAK--LGVDIIEAGFP--------IASPDDLEAVK 141 (632)
T ss_pred CcccccccCCCCCceEEEECCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCc--------CCCccHHHHHH
Confidence 467777777788899999999999999986 67999999999999999 89999999865 35788999999
Q ss_pred HHHHhCCC--------CceeeeecccccccccCCCcchHHHHHHHHHhcC--C--CEEEEeccCChHH------------
Q psy15244 725 ELRELIPN--------IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG--I--DIFRVFDPLNSVP------------ 780 (1427)
Q Consensus 725 ~lr~~~p~--------~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~G--i--d~~rif~~~nd~~------------ 780 (1427)
.+.+.+++ ..+..|.|+ ..+.+++|.+++ . .++++|.+.|++|
T Consensus 142 ~i~~~~~~~v~~~~~v~~i~a~~ra-------------~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~ 208 (632)
T PLN02321 142 TIAKEVGNEVDEDGYVPVICGLSRC-------------NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEV 208 (632)
T ss_pred HHHHhcccCCCccccceeeeeehhc-------------cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHH
Confidence 99877654 334555554 244578888874 3 3799999999886
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHH
Q psy15244 781 --NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSF 858 (1427)
Q Consensus 781 --~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~l 858 (1427)
.+..+++++++.|. . .+.| ++||+++.+++|++++++.+.++||++|+||||+|+++|.+++++|+.|
T Consensus 209 l~~~~~~V~~Ak~~G~---~---~v~f----s~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 209 VEIARDMVKYARSLGC---E---DVEF----SPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred HHHHHHHHHHHHHcCC---c---eEEE----ecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHH
Confidence 35677888888887 2 2233 4889999999999999999999999999999999999999999999999
Q ss_pred HHHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCCChhh
Q psy15244 859 REKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGIDLHD 929 (1427)
Q Consensus 859 r~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgidl~~ 929 (1427)
++++| +++|++|||||+|||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|+++
T Consensus 279 ~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~ 358 (632)
T PLN02321 279 KANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVH 358 (632)
T ss_pred HHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHH
Confidence 99987 4679999999999999999999999999999999999999999999999999985 36889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCc----CcccEEEecCCCccHHHHHH
Q psy15244 930 VCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKA----ASSEAYLYEIPGGQYTNLKF 1005 (1427)
Q Consensus 930 L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g----~~~~v~~~~~pGg~~snl~~ 1005 (1427)
|.++++++++.+|+++++|||+||.|+|+|++|+|++++.|++..|+||+ |+..| .++++++++++|.. ++..
T Consensus 359 L~~~s~~V~~~~g~~v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~-Pe~VG~~r~~~~~i~lgk~SGr~--~v~~ 435 (632)
T PLN02321 359 ITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIIS-PEDIGLFRGNDAGIVLGKLSGRH--ALKS 435 (632)
T ss_pred HHHHHHHHHHHhCcCCCCCcccccccceehhcCccHHHHccCcccccccC-HHHhCCcccccceecccccccHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999 66666 34589999999984 8999
Q ss_pred HHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 1006 RTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 1006 ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
.|+++|+ ..+++.+.+.+++++
T Consensus 436 ~L~~lG~~l~~~~~~~~~~~vk~l 459 (632)
T PLN02321 436 RLKELGYELDDDELDDVFKRFKAV 459 (632)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999 666777777777764
No 37
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=1.3e-54 Score=496.76 Aligned_cols=269 Identities=48% Similarity=0.803 Sum_probs=258.5
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+||+++++|++++|++|++.|++ +|+++||+|+|++|+++++|++++||++++.+++.+|++++++|+|
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~--~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDE--AGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHH--cCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcc
Confidence 68999999999998899999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
+.|.+||.+||+|+++.+++.+.++|++++|||+++|+++++..+++++|+.|+ .+.++++++ +.++++++
T Consensus 79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~---~v~~~i~~~------~~~~~~~~ 149 (275)
T cd07937 79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK---HVEGAICYT------GSPVHTLE 149 (275)
T ss_pred cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC---eEEEEEEec------CCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 888888876 22589999
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
++.++++++.++|+++|+|+||+|.++|.+++++|+.+|+++| ++|++|+|||+|||+||+++|+++||++||+|++||
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl 228 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL 228 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 9999999999999999999999999999999999999999995 999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHh
Q psy15244 901 SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVR 941 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~ 941 (1427)
|||+||++||+++++|+..|+++++|+++|.+++++++++.
T Consensus 229 G~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 229 SGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred cCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888777653
No 38
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=1.2e-53 Score=523.56 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=299.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCcee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQ 736 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~q 736 (1427)
+|.|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.++. ++..++.++.+++.. .+..++
T Consensus 1 ~V~I~DtTLRDG~Q~~g-~~~s~eeKl~Ia~~L~~--~GVd~IE~G~p~~--------s~~d~~~v~~i~~~~~~~~~i~ 69 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREG-VSFSLEDKIRIAERLDD--LGIHYIEGGWPGA--------NPKDVQFFWQLKEMNFKNAKIV 69 (526)
T ss_pred CeEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChHHHHHHHHHHHhCCCCcEEE
Confidence 47999999999999985 88999999999999999 8999999975543 566677888887654 468899
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
+|+|.... +. ..+ .+..++.+.++|.+++++|.+.|++| .+..+++++++.|. .++.
T Consensus 70 ~~~r~~r~-~~--~~~--~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~---~V~~- 140 (526)
T TIGR00977 70 AFCSTRRP-HK--KVE--EDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD---EVIY- 140 (526)
T ss_pred EEeeecCC-CC--CCc--hHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE-
Confidence 99886411 00 012 24568999999999999999999875 34667889999998 6542
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
...||. |+++++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++++|..+|++|||||+|||+||+
T Consensus 141 --~~e~f~--D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANs 216 (526)
T TIGR00977 141 --DAEHFF--DGYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANS 216 (526)
T ss_pred --Eeeeee--ecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHH
Confidence 222332 4558999999999999999999999999999999999999999999999976679999999999999999
Q ss_pred HHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCC--CCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhh
Q psy15244 883 LACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKR--CGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLH 959 (1427)
Q Consensus 883 laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~--tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~ 959 (1427)
++|++|||++||+|++|||||+||++||+++++|.. .|++ |++|+++|.++++++++.+|+++++|+|+||.|+|+|
T Consensus 217 laAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h 296 (526)
T TIGR00977 217 LLAVEAGATMVQGTINGYGERCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAH 296 (526)
T ss_pred HHHHHhCCCEEEEecccccCccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeee
Confidence 999999999999999999999999999999999985 5776 7999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC---CH-HHHHHHHHHHHHH
Q psy15244 960 DVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL---DF-EDVKRAYRTANFL 1027 (1427)
Q Consensus 960 ~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl---~~-~ev~~~~~~v~~~ 1027 (1427)
++|+|++++.|++..|+||+ |+..|..++++++++||.. +++.+|+++|+ +. +++.+.+.+++++
T Consensus 297 ~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~i~lg~~SG~~--~v~~~l~~~g~~l~~~~~~~~~~~~~vk~~ 365 (526)
T TIGR00977 297 KGGVHVSAVQRNPFTYEHIA-PELVGNERRIVVSELAGLS--NVLSKAKEFGIEIDRQSPACRTILAKIKEL 365 (526)
T ss_pred eccccHHHHhCCccccccCC-HHHcCCccEEEEecccCHH--HHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999 7788888999999999974 99999999999 22 5788888888874
No 39
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=498.04 Aligned_cols=337 Identities=18% Similarity=0.251 Sum_probs=290.6
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|.|+|||||||+|++. ..|++++|++||..|++ +|++.||++.++. ++...+..+.+....+. -.+
T Consensus 1 ~~v~i~DtTLRDG~Q~~g-~~~s~e~Ki~Ia~~Ld~--lGv~~IE~g~p~~--------s~~~~~~~~~i~~~~~~-~~~ 68 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPG-VSFSVEEKIRIAKALDD--LGVDYIEAGFPVA--------SPGDFEFVRAIAEKAGL-FIC 68 (409)
T ss_pred CCcEEEeCCCCcCCcCCC-CcCCHHHHHHHHHHHHH--cCCCEEEEeCCcC--------ChhhHHHHHHHHHhcCc-ccc
Confidence 468999999999999985 88999999999999999 8999999987754 33334445555542221 112
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
.+.++ ...+ ++..++.+.++|++.+++|.+.|+++ .+..+++++++.|. .+..
T Consensus 69 ~~~~~--------~~~~-~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~---~~~~- 135 (409)
T COG0119 69 ALIAA--------LARA-IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL---EVRF- 135 (409)
T ss_pred hhhhh--------hHHh-HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE-
Confidence 22222 1222 45569999999999999999999875 45677888888887 4443
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An 881 (1427)
+.++.++.+++|++++++.+.++||++|+|+||+|.++|..++++|+.|++.+| +++|++|||||+|||+||
T Consensus 136 -------~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvAN 208 (409)
T COG0119 136 -------SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVAN 208 (409)
T ss_pred -------EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHH
Confidence 145666999999999999999999999999999999999999999999999997 599999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhh
Q psy15244 882 TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDL 958 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~ 958 (1427)
+++|++|||++||+|++|+|||+||+++|+++++|... ++++++|+++|.++|+++++.+|+++|+|+|+||.|+|+
T Consensus 209 slaAv~aGa~~v~~TvnGiGERaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFa 288 (409)
T COG0119 209 SLAAVEAGADQVEGTVNGIGERAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFA 288 (409)
T ss_pred HHHHHHcCCcEEEEecccceeccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHH
Confidence 99999999999999999999999999999999766543 679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHc
Q psy15244 959 HDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLL 1028 (1427)
Q Consensus 959 ~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~l 1028 (1427)
|++|+|+++++|++.+|+|++ |+..|..++++++ +++|+. .+...|+++|+ ..+++.+.+.+++++-
T Consensus 289 h~sGIH~dgvlkn~~tYE~i~-Pe~VG~~r~~vi~~~~sg~~--~~~~~l~~~g~~~~~~~~~~~~~~vk~l~ 358 (409)
T COG0119 289 HESGIHQDGVLKNPETYEPID-PEDVGRRRRIVIGGKHSGRK--AVKAKLEELGIELDEEELDKLFSRVKELA 358 (409)
T ss_pred hhcchhHHHHhhCHhhcCCCC-HHHcCCeeeeEeeccccchH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8888888888888 777764 77789999999 7888899999998864
No 40
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=2.2e-51 Score=506.20 Aligned_cols=348 Identities=15% Similarity=0.137 Sum_probs=293.7
Q ss_pred cccccccc--CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHH
Q psy15244 648 EFVNSVRK--LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAE 725 (1427)
Q Consensus 648 ~~~~~~~~--~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~ 725 (1427)
.-.+|.++ .++..|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.|+. ++..++.++.
T Consensus 18 ~~~~~~~~~~~~~~~i~dttLRDGeQ~~g-v~~s~~~Ki~ia~~L~~--~GV~~IE~GfP~~--------s~~e~e~v~~ 86 (552)
T PRK03739 18 PDRTWPSKTITKAPIWCSVDLRDGNQALI-EPMSPERKLRMFDLLVK--IGFKEIEVGFPSA--------SQTDFDFVRE 86 (552)
T ss_pred CCCCCCCcccCCCCeEeeCCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEECCCc--------ChHHHHHHHH
Confidence 33456655 4788999999999999985 78999999999999999 8999999987664 5566777888
Q ss_pred HHHhC---CCCceeeeecccccccccCCCcchHHHHHHHHHhc--CC--CEEEEeccCChHH--------------HHHH
Q psy15244 726 LRELI---PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA--GI--DIFRVFDPLNSVP--------------NLVK 784 (1427)
Q Consensus 726 lr~~~---p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gi--d~~rif~~~nd~~--------------~~~~ 784 (1427)
+.+.. ++..++.|.|. ++.++++|.++ |+ +++++|.+.|++| .+..
T Consensus 87 i~~~~~~~~~~~i~~l~r~-------------~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~ 153 (552)
T PRK03739 87 LIEEGLIPDDVTIQVLTQA-------------REHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVD 153 (552)
T ss_pred HHHhcCCCCCCEEEEEecc-------------chhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 86552 46778888886 34568888776 44 4799999999875 3466
Q ss_pred HHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH---CCCC---EEEEccccCcCCHHHHHHHHHHH
Q psy15244 785 GMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE---SGAQ---VLCLKDMAGLLKPTAAKLLIGSF 858 (1427)
Q Consensus 785 ~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~---~Gad---~i~i~Dt~G~l~P~~~~~lv~~l 858 (1427)
+++++++.|.........+.| +.+|++|.+++|++++++.+.+ +|++ +|+|+||+|.++|.+++++|+.+
T Consensus 154 ~v~~a~~~~~~~~~~~~~v~f----~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l 229 (552)
T PRK03739 154 GARLVKELAAKYPETEWRFEY----SPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWM 229 (552)
T ss_pred HHHHHHHhcccccCceeEEEE----ecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHH
Confidence 777888877400001122333 4789999999999999999886 4655 59999999999999999999999
Q ss_pred HHHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHH
Q psy15244 859 REKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935 (1427)
Q Consensus 859 r~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~ 935 (1427)
++.+| +++|++|||||+|||+||+++|++|||++||+|++|+|||+||++||+|+++|+.+|+++++|+++|.++++
T Consensus 230 ~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GERaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~ 309 (552)
T PRK03739 230 CRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGERTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRR 309 (552)
T ss_pred HHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcccccChhHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99987 799999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhh-----------hcCCCCCCCCCcCccc--EEEecCCCccHHH
Q psy15244 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRE-----------LYAPFECTDLKAASSE--AYLYEIPGGQYTN 1002 (1427)
Q Consensus 936 ~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~-----------~Y~~f~~~~~~g~~~~--v~~~~~pGg~~sn 1002 (1427)
++++++|+++|+||||||.|+|+|++|+|++++.|++. .|+||+ |+..|..++ ++++++||.. +
T Consensus 310 ~v~~~~~~~i~~~~PivG~~aF~hesGiH~dgilk~~~~~~~~~~~~~~~Ye~~~-Pe~vG~~~~~~i~lgk~SG~~--~ 386 (552)
T PRK03739 310 TVEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFAAQKADAIVWEVPYLPID-PADVGRSYEAVIRVNSQSGKG--G 386 (552)
T ss_pred HHHHHhCCCCCCCCCccchhhhhhccchhHHHHhcCchhcccccccccccccccC-HHHhCCcceeEEEecccccHH--H
Confidence 99999999999999999999999999999999999987 899999 788888776 5789999985 8
Q ss_pred HHHHHH-HCCC--CHHHHHHHHHHHHH
Q psy15244 1003 LKFRTM-SFGL--DFEDVKRAYRTANF 1026 (1427)
Q Consensus 1003 l~~ql~-~~gl--~~~ev~~~~~~v~~ 1026 (1427)
++..|+ ++|+ ..+++.+.+.++++
T Consensus 387 i~~~l~~~lG~~l~~~~~~~~~~~vk~ 413 (552)
T PRK03739 387 VAYLLEQDYGLDLPRRLQIEFSRVVQA 413 (552)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999997 6999 43444444444443
No 41
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=1.3e-50 Score=500.60 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=289.8
Q ss_pred ccccc--CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHH
Q psy15244 651 NSVRK--LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRE 728 (1427)
Q Consensus 651 ~~~~~--~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~ 728 (1427)
.|..+ .+.+.|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.++. ++...+.++.+.+
T Consensus 17 ~w~~~~~~~~~~~~DtTLRDG~Q~~g-~~~s~e~Ki~ia~~L~~--~Gvd~IE~Gfp~~--------s~~D~e~v~~i~~ 85 (564)
T TIGR00970 17 TWPDRVITRAPRWLSTDLRDGNQALP-DPMSPARKRRYFDLLVR--IGFKEIEVGFPSA--------SQTDFDFVREIIE 85 (564)
T ss_pred CCCccccCcCCeEecCCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHH
Confidence 45543 4778999999999999985 78999999999999999 8999999986653 3455666777765
Q ss_pred h--C-CCCceeeeecccccccccCCCcchHHHHHHHHHhc--CC--CEEEEeccCChHH--------------HHHHHHH
Q psy15244 729 L--I-PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA--GI--DIFRVFDPLNSVP--------------NLVKGMD 787 (1427)
Q Consensus 729 ~--~-p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gi--d~~rif~~~nd~~--------------~~~~~i~ 787 (1427)
. . +++.++.|.|.. +.+++++.++ |+ +++++|.+.|+++ .+..+++
T Consensus 86 ~~l~~~~~~i~al~~~~-------------~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~ 152 (564)
T TIGR00970 86 QGAIPDDVTIQVLTQSR-------------EELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTK 152 (564)
T ss_pred hcCCCCCcEEEEEcCCc-------------hhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5 2 357788887752 3446777766 44 4899999999875 3456677
Q ss_pred HHHHhcCCCcEEEEEEE--eeccCCCCCCCCCCHHHHHHHHHHHHHCCC------CEEEEccccCcCCHHHHHHHHHHHH
Q psy15244 788 AVQQVTGGSTIVEATIC--YAGDLTNPNKKKYSLNYYEDLAKQLVESGA------QVLCLKDMAGLLKPTAAKLLIGSFR 859 (1427)
Q Consensus 788 ~a~~~G~~~~~v~~~i~--~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga------d~i~i~Dt~G~l~P~~~~~lv~~lr 859 (1427)
++++.|. ....++. +.--|+.+|.+|.+++|++++++.+.++|+ ++|+|+||+|.++|.+++++|+.|+
T Consensus 153 ~ak~~~~---~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~ 229 (564)
T TIGR00970 153 LVRKCTK---QAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFS 229 (564)
T ss_pred HHHHhcc---cccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHH
Confidence 7888776 3222110 011134788999999999999999999987 4999999999999999999999999
Q ss_pred HHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy15244 860 EKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSY 936 (1427)
Q Consensus 860 ~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~ 936 (1427)
+.+| +++|++|||||+|||+||+++|++|||++||+|++|+|+|+||++||+|+++|+.+|+++++|++.|.+++++
T Consensus 230 ~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~ 309 (564)
T TIGR00970 230 TNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRT 309 (564)
T ss_pred HhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 9886 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhh---------------hcCCCCCCCCCcCccc--EEEecCCCcc
Q psy15244 937 WRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRE---------------LYAPFECTDLKAASSE--AYLYEIPGGQ 999 (1427)
Q Consensus 937 v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~---------------~Y~~f~~~~~~g~~~~--v~~~~~pGg~ 999 (1427)
+++++|+++++|+|+||.|+|+|++|+|++++.|++. .|+||+ |+..|..++ ++++++||..
T Consensus 310 v~~~~~~~i~~~~PivG~~aF~h~SGiH~dai~K~~~~~~~~~~~~~~~~~~~Ye~~~-Pe~vG~~~~~~i~lg~~SGk~ 388 (564)
T TIGR00970 310 VEYCNKIPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDAAAADMLWQVPYLPLD-PRDVGRTYEAVIRVNSQSGKG 388 (564)
T ss_pred HHHHhCCCCCCCCCchhhhHhhhccchhHHHHhcCchhhcccccccccccccccccCC-HHHhCCccccEEEccccccHH
Confidence 9999999999999999999999999999999999976 999999 777777766 8899999985
Q ss_pred HHHHHHHHH-HCCC--CHHHHHHHHHHHHH
Q psy15244 1000 YTNLKFRTM-SFGL--DFEDVKRAYRTANF 1026 (1427)
Q Consensus 1000 ~snl~~ql~-~~gl--~~~ev~~~~~~v~~ 1026 (1427)
++...|+ ++|+ ..+++.+.+.++++
T Consensus 389 --~i~~~l~~~~G~~l~~~~~~~~~~~vk~ 416 (564)
T TIGR00970 389 --GVAYIMKTDHGLDLPRRLQIEFSSVVQD 416 (564)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8999996 7999 33444444444443
No 42
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=7.6e-47 Score=433.53 Aligned_cols=264 Identities=18% Similarity=0.202 Sum_probs=239.2
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhh-hccccChHHHHHHHHHhCCCCce
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL-KFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~-rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
++|.|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|. |.... .-...++|+.++.+++ ++++.+
T Consensus 3 ~~v~I~D~TlRDG~Q~~-~~~~s~e~k~~ia~~L~~--~Gv~~IEvgs---f~~p~~~p~~~d~~e~~~~l~~-~~~~~~ 75 (287)
T PRK05692 3 KRVKIVEVGPRDGLQNE-KRFIPTADKIALIDRLSA--AGLSYIEVAS---FVSPKWVPQMADAAEVMAGIQR-RPGVTY 75 (287)
T ss_pred CceEEEECCCCccccCc-CCCcCHHHHHHHHHHHHH--cCCCEEEeCC---CcCcccccccccHHHHHHhhhc-cCCCeE
Confidence 57999999999999998 599999999999999999 8999999982 22221 1112367999999976 678888
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
++|++ | ...+++|.++|++.+++|.++|+. ++++.+++++++.|. .+.+
T Consensus 76 ~~l~~------------~--~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~---~v~~ 138 (287)
T PRK05692 76 AALTP------------N--LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGV---RVRG 138 (287)
T ss_pred EEEec------------C--HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---EEEE
Confidence 87753 2 234899999999999999999965 357789999999999 9999
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+|||+ |++|+.+++++++++++++++.++|+|+|+||||+|+++|.+++++|+.+|+++|+++|++|+|||+|||+||
T Consensus 139 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN 216 (287)
T PRK05692 139 YVSCV--LGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALAN 216 (287)
T ss_pred EEEEE--ecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHH
Confidence 99999 7899999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q psy15244 882 TLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~ 946 (1427)
+++|+++||++||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 217 ~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 217 IYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999 89999999999999999999999999999999999999999876
No 43
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=100.00 E-value=2.8e-49 Score=424.37 Aligned_cols=193 Identities=35% Similarity=0.558 Sum_probs=161.9
Q ss_pred EEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccc
Q psy15244 990 AYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIF 1067 (1427)
Q Consensus 990 v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~ 1067 (1427)
||.|||||||+|||++||+++|+ +|++|+++|++||++||||||||||||||||||+|||++++..+ ...+|
T Consensus 1 V~~hqiPGG~~sNl~~Q~~~~g~~dr~~ev~~e~~~v~~~lG~~~~VTPsSqiVg~qA~~nV~~~~~g~------r~~~~ 74 (196)
T PF02436_consen 1 VYRHQIPGGMYSNLRQQLKELGLGDRFPEVLKEYPRVRKDLGYPPKVTPSSQIVGDQAVFNVLNGLLGE------RYKDF 74 (196)
T ss_dssp HHHH---HHHHHHHHHHHHCTTTTTCHHHHHHHHHHHHHHTTS--SSTTHHHHHHHHHHHHHHTT-HHT------TTSS-
T ss_pred CceecCCchhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHhhhcCc------cccch
Confidence 46899999999999999999999 99999999999999999999999999999999999999965222 33589
Q ss_pred cHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCC
Q psy15244 1068 PKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPV 1147 (1427)
Q Consensus 1068 ~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~ 1147 (1427)
|+||++|++|+||+||+|||++++++||+++++|++||++. ++|.||+++ ++ ++.+++|
T Consensus 75 p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~~~~i~~RP~~~-----------l~p~d~~~~-----r~---~l~~~~g-- 133 (196)
T PF02436_consen 75 PDSVVDYLLGKYGKPPGGFPEELRKKVLKGEEPITGRPGDL-----------LPPADLDKL-----RK---ELEEKAG-- 133 (196)
T ss_dssp BHHHHHHHTTTT---TTSS-HHHHHHHHTTS---SSSGGGC-----------S----HHHH-----HH---HHHHHCT--
T ss_pred hHHHHHHhCcccCCCCCCCCHHHHHHHhcCCCCCCCCcccc-----------CChhhHHHH-----HH---HHHHHcC--
Confidence 99999999999999999999999999999999999999999 999999988 88 8888888
Q ss_pred CCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeC
Q psy15244 1148 DKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKT 1227 (1427)
Q Consensus 1148 ~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~ 1227 (1427)
++.++|| +|||+|||+++.+|+++|++||+++.|||+.|++|+++|++++|++++
T Consensus 134 ------------------~~~~ded-------vlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~v~l~~ 188 (196)
T PF02436_consen 134 ------------------REPTDED-------VLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEISVELEP 188 (196)
T ss_dssp ------------------STSCHHH-------HHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEEEESCT
T ss_pred ------------------CCCCHHH-------HHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEEEEECC
Confidence 4579999 999999999999999999999999999999999999999999999999
Q ss_pred CcEEEee
Q psy15244 1228 GDTAYVT 1234 (1427)
Q Consensus 1228 Gk~~~i~ 1234 (1427)
||++.|+
T Consensus 189 Gktl~vk 195 (196)
T PF02436_consen 189 GKTLIVK 195 (196)
T ss_dssp TEEEEEE
T ss_pred CcEEEEe
Confidence 9999997
No 44
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=3.3e-46 Score=426.10 Aligned_cols=255 Identities=20% Similarity=0.270 Sum_probs=233.8
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEecc-----CCCchhhhhhccccChHHHHHHHHHhCCCC
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW-----GGAVSHTCLKFLKECPWERLAELRELIPNI 733 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~-----ggatfd~~~rfl~e~p~erl~~lr~~~p~~ 733 (1427)
|+|+|||||||+|+. +++|++++|+++++.|++ +|++.||+| ++++|+ ++|..++||++++.+++.++++
T Consensus 1 i~i~D~TlRDG~Q~~-~~~~~~~~k~~i~~~L~~--~Gv~~iEvg~~~~~~~~~~~--~~~~~~~~~e~i~~~~~~~~~~ 75 (263)
T cd07943 1 VYIHDVTLRDGMHAV-RHQFTLEQVRAIARALDA--AGVPLIEVGHGDGLGGSSLN--YGFAAHTDEEYLEAAAEALKQA 75 (263)
T ss_pred CEEEeCCCCcCcccC-CeecCHHHHHHHHHHHHH--cCCCEEEeecCCCCCCcccc--cCCCCCChHHHHHHHHHhccCC
Confidence 579999999999985 699999999999999999 899999999 455664 5678899999999999999999
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
++++|++- ++. + .++++++.++|+|.+||+++.|+.++++.+++.+++.|+ .+.++++.+
T Consensus 76 ~~~~~~~~----~~~----~--~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~---~v~~~~~~~------- 135 (263)
T cd07943 76 KLGVLLLP----GIG----T--VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM---DVVGFLMMS------- 135 (263)
T ss_pred EEEEEecC----Ccc----C--HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC---eEEEEEEec-------
Confidence 99998741 111 1 356999999999999999999999999999999999999 888877644
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 814 KKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 814 ~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
++++++++.++++++.++|+|+|+|+||+|.++|.+++++++.+|+++|.++|++|+|||+|||+||+++|+++||++|
T Consensus 136 -~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 136 -HMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred -cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 3799999999999999999999999999999999999999999999996569999999999999999999999999999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
|+|++|||+|+||++||+++++|+..|+++++|+++|.++++++.+
T Consensus 215 d~s~~GlG~~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 215 DGSLAGLGAGAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred EeecccccCCcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998765
No 45
>KOG2367|consensus
Probab=100.00 E-value=8.9e-46 Score=421.49 Aligned_cols=342 Identities=17% Similarity=0.197 Sum_probs=295.3
Q ss_pred ccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHh
Q psy15244 650 VNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL 729 (1427)
Q Consensus 650 ~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~ 729 (1427)
++.+...+.++++|||||||+||+.+ .|++++|++||++|+. .|+++||++.+.. +|..++..+.+.+.
T Consensus 49 ~~~l~~~n~vr~~dttLRdGeQs~ga-~~~~~qK~eiar~L~~--~gvd~IEv~fP~a--------Se~~~~~~~~i~k~ 117 (560)
T KOG2367|consen 49 PNDLSDVNYVRVLDTTLRDGEQSPGA-FLTTEQKLEIARQLAK--LGVDIIEVGFPVA--------SEQDFEDCKTIAKT 117 (560)
T ss_pred CccccCcCcceeecccccccccCCCC-cCCcHHHHHHHHHHHh--cCcCEEEecCccc--------CcchHHHHHHHHHh
Confidence 55566778899999999999999975 5999999999999999 7999999997754 77888888888886
Q ss_pred CCCCc-eeeeecccccccccCCCcchHHHHHHHHHhcCCCE----EEEeccCChHH--------------HHHHHHHHHH
Q psy15244 730 IPNIP-FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDI----FRVFDPLNSVP--------------NLVKGMDAVQ 790 (1427)
Q Consensus 730 ~p~~~-~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~----~rif~~~nd~~--------------~~~~~i~~a~ 790 (1427)
.|..+ ++.|.|+. ..+++++.+++.+. +++|.+.|+++ ...++++.|+
T Consensus 118 ~g~~~~I~~l~rc~-------------~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvk 184 (560)
T KOG2367|consen 118 LGYVPVICTLIRCH-------------MDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVK 184 (560)
T ss_pred CCCCceEEEeeccc-------------hHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 66544 89999874 34577777777665 99999999985 2234556777
Q ss_pred HhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---CceE
Q psy15244 791 QVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILI 867 (1427)
Q Consensus 791 ~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi 867 (1427)
.+|+ -.+. |++++.++.+.+|+++++++..++|+.++.|+||+|+.+|.+.++||..++.+.| ++-|
T Consensus 185 slg~------~~ie----FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~I 254 (560)
T KOG2367|consen 185 SLGK------WDIE----FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCI 254 (560)
T ss_pred hccc------ceEE----ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEE
Confidence 7775 1122 4588999999999999999999999999999999999999999999999999887 5679
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCC---CCCCCChhhHHHHHHHHHHHhCCC
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTD---KRCGIDLHDVCDYSSYWRKVRELY 944 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g---~~tgidl~~L~~l~~~v~~~~g~~ 944 (1427)
..|||||+|+|+||+..++.|||+.|++|++|+|||+||++|++|+++|.-.| +...+++.+|.++.+++++..+++
T Consensus 255 s~HcHND~G~a~Ant~~g~~AGA~~VE~~i~GiGERtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~ 334 (560)
T KOG2367|consen 255 STHCHNDLGCATANTELGLLAGARQVEVTINGIGERTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGIN 334 (560)
T ss_pred EEeecCCccHHHHHHHHHhhcCcceEEEEeeccccccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999888 778899999999999999999999
Q ss_pred CCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCc-ccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHH
Q psy15244 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAAS-SEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAY 1021 (1427)
Q Consensus 945 ~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~-~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~ 1021 (1427)
+|+++||+|.++|+|++|+|+|++.|.|..|+|.+|.+++... .-+..++.+|.. .++..++++|| ..+...+..
T Consensus 335 v~p~~pi~G~~~Fth~SGiHqdaIlk~r~tYeiLdPeDiG~~~~a~i~~n~lSG~~--avk~rl~~Lgl~L~d~~~~e~~ 412 (560)
T KOG2367|consen 335 VPPHKPIVGANAFTHESGIHQDAILKNRSTYEILDPEDIGMEREAGIVLNKLSGRH--AVKDRLKQLGLDLPDEQQKEFF 412 (560)
T ss_pred CCCCCccccceeEeecccccHHHHhcCCCCcccCChHHcCcceeeeEEeccccchh--HHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999955554322 456788999986 78889999999 555555555
Q ss_pred HHHHHH
Q psy15244 1022 RTANFL 1027 (1427)
Q Consensus 1022 ~~v~~~ 1027 (1427)
.+++++
T Consensus 413 s~~k~l 418 (560)
T KOG2367|consen 413 SRIKKL 418 (560)
T ss_pred HHHHHH
Confidence 555543
No 46
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=417.62 Aligned_cols=268 Identities=13% Similarity=0.148 Sum_probs=233.7
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NI 733 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~ 733 (1427)
+.-.|+|||||||+|++. ..|+.++|++||+.|++ +||+.||+|.++. +++.++.++.|.+... ++
T Consensus 31 ~~p~~~DTTLRDGeQ~pG-v~fs~eeKl~IA~~L~~--lGVd~IEvG~Pa~--------s~~e~e~ir~I~~~~~~~~~~ 99 (333)
T PRK14847 31 AAPIWMSTDLRDGNQALI-EPMDGARKLRLFEQLVA--VGLKEIEVAFPSA--------SQTDFDFVRKLIDERRIPDDV 99 (333)
T ss_pred CCCceecCCCCccCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEeeCCCC--------CHHHHHHHHHHHHhCCCCCCc
Confidence 344699999999999996 78999999999999999 7999999998875 6677888888887753 68
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHHHHHHHhcCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGG 795 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~ 795 (1427)
.++.|+|+. .++|+++.++ +.++++||.+.|+++ .+.+++++|++.|.
T Consensus 100 ~i~~~~r~~-------------~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~- 165 (333)
T PRK14847 100 TIEALTQSR-------------PDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD- 165 (333)
T ss_pred EEEEEecCc-------------HHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-
Confidence 899999974 3345555555 456799999999875 45678888888854
Q ss_pred CcEEE---EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC-C-----CCEEEEccccCcCCHHHHHHHHHHHHHHcC---
Q psy15244 796 STIVE---ATICYAGDLTNPNKKKYSLNYYEDLAKQLVES-G-----AQVLCLKDMAGLLKPTAAKLLIGSFREKYP--- 863 (1427)
Q Consensus 796 ~~~v~---~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~-G-----ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p--- 863 (1427)
... ..+.| +.+|++|++++|+.++++.+.+. | +++|+|+||+|.++|..++++|+.|+++++
T Consensus 166 --~~~g~~~~V~~----~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~ 239 (333)
T PRK14847 166 --ANPGTQWIYEY----SPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRD 239 (333)
T ss_pred --ccCCCceEEEE----eeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 111 12333 37899999999999999987655 5 778999999999999999999999999875
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCC
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~ 943 (1427)
+++|++|+|||+|||+||+++|++|||++||+|++|+|+|+||++||+|+++|+..|+++++|++.|.++++++++.+|+
T Consensus 240 ~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~ 319 (333)
T PRK14847 240 CIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQL 319 (333)
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q psy15244 944 YAPAHNLLWRCG 955 (1427)
Q Consensus 944 ~~~~~kpivG~~ 955 (1427)
++|+|||++|-+
T Consensus 320 ~v~~~kPivg~~ 331 (333)
T PRK14847 320 PIDVFHPYAWLD 331 (333)
T ss_pred CCCCCCCeecCC
Confidence 999999999964
No 47
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=1.7e-44 Score=422.43 Aligned_cols=258 Identities=19% Similarity=0.254 Sum_probs=236.7
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccC-----CCchhhhhhccccChHHHHHHHHHhCC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG-----GAVSHTCLKFLKECPWERLAELRELIP 731 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~g-----gatfd~~~rfl~e~p~erl~~lr~~~p 731 (1427)
++|+|+|||||||+|+. +++|+++++++|++.|++ +|++.||+|. |++|+ +.|...++||.++.+++.++
T Consensus 2 ~~i~I~D~TLRDG~q~~-~~~f~~~~~~~i~~~L~~--aGv~~IEvg~~~g~g~~s~~--~g~~~~~~~e~i~~~~~~~~ 76 (337)
T PRK08195 2 KKIYISDVTLRDGMHAV-RHQYTLEQVRAIARALDA--AGVPVIEVTHGDGLGGSSFN--YGFGAHTDEEYIEAAAEVVK 76 (337)
T ss_pred CceEEEECCCCCcCcCC-CCccCHHHHHHHHHHHHH--cCCCEEEeecCCCCCCcccc--CCCCCCCHHHHHHHHHHhCC
Confidence 57999999999999986 699999999999999999 8999999984 44554 45777889999999999999
Q ss_pred CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 732 NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 732 ~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
++++++|++- |+. + .++++.|.++|+|.|||+.++++.+++.+.++.+|+.|+ .+.+.++++.
T Consensus 77 ~~~~~~ll~p----g~~----~--~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~---~v~~~l~~a~---- 139 (337)
T PRK08195 77 QAKIAALLLP----GIG----T--VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGM---DTVGFLMMSH---- 139 (337)
T ss_pred CCEEEEEecc----Ccc----c--HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCC---eEEEEEEecc----
Confidence 9999988752 111 2 245999999999999999999999999999999999999 8888888762
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
++++++++++++.+.++|+++|+|+||+|.++|.+++++|+++++++ |+++|++|+|||+|||+||+++|+++||
T Consensus 140 ----~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa 215 (337)
T PRK08195 140 ----MAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGA 215 (337)
T ss_pred ----CCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKV 940 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~ 940 (1427)
++||+|++|||+++||++||+++++|+.+|+++++|+++|.++++++..-
T Consensus 216 ~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p 265 (337)
T PRK08195 216 TRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRP 265 (337)
T ss_pred CEEEecChhhcccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987654
No 48
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=3e-44 Score=417.15 Aligned_cols=268 Identities=17% Similarity=0.145 Sum_probs=235.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
.++|.|+|||||||.|++. ..|++++|++|++.|++ +|++.||++.++... .+..+. +..|.++.+++ .++..+
T Consensus 44 ~~~V~I~DtTlRDG~Q~~g-~~~s~e~Ki~ia~~L~~--~GV~~IEvGs~vspk-~vPqma-d~~ev~~~i~~-~~~~~~ 117 (347)
T PLN02746 44 PKFVKIVEVGPRDGLQNEK-NIVPTSVKVELIQRLVS--SGLPVVEATSFVSPK-WVPQLA-DAKDVMAAVRN-LEGARF 117 (347)
T ss_pred CCceEEEECCCCccCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEECCCcCcc-cccccc-cHHHHHHHHHh-ccCCce
Confidence 4679999999999999985 78999999999999999 899999998654211 122222 33455666654 344444
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
..|++ | .+.+++|.++|++.+++|.+.|+.+ .+.++++++++.|+ .+.+
T Consensus 118 ~~l~~------------n--~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl---~v~~ 180 (347)
T PLN02746 118 PVLTP------------N--LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSI---PVRG 180 (347)
T ss_pred eEEcC------------C--HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE
Confidence 44331 3 3459999999999999999999875 34578999999999 9999
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+++++ |++|+.++.++++++++++++.++|+|+|+||||+|+++|.+++++|+++++++|..+|++|+|||+|||+||
T Consensus 181 ~is~~--fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN 258 (347)
T PLN02746 181 YVSCV--VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALAN 258 (347)
T ss_pred EEEee--ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHH
Confidence 99998 7899999999999999999999999999999999999999999999999999997789999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCC
Q psy15244 882 TLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAH 948 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~ 948 (1427)
+++|+++||++||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.+|++++..
T Consensus 259 ~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~ 331 (347)
T PLN02746 259 ILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSK 331 (347)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999 8999999999999999999999999999999999999999998863
No 49
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=3.3e-44 Score=418.98 Aligned_cols=257 Identities=16% Similarity=0.220 Sum_probs=234.9
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEecc-----CCCchhhhhhccccChHHHHHHHHHhCC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW-----GGAVSHTCLKFLKECPWERLAELRELIP 731 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~-----ggatfd~~~rfl~e~p~erl~~lr~~~p 731 (1427)
++|+|+|||||||+|+. +++|+++++++|++.|++ +|++.||+| ||++|+. .|...++|+.++.+++.++
T Consensus 1 ~~i~i~D~TLRDG~q~~-~~~f~~~~~~~ia~~Ld~--aGV~~IEvg~g~gl~g~s~~~--G~~~~~~~e~i~~~~~~~~ 75 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAI-RHQFTIEQVRAIAAALDE--AGVDAIEVTHGDGLGGSSFNY--GFSAHTDLEYIEAAADVVK 75 (333)
T ss_pred CCcEEEECCCCCCCcCC-CCcCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCccccC--CCCCCChHHHHHHHHHhCC
Confidence 46899999999999986 699999999999999999 899999998 4556653 4677889999999999999
Q ss_pred CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 732 NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 732 ~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
+++++++++.. . -+ .++++.|.++|+|.|||+.++++.++.++.++.+|+.|+ .+.+.++++
T Consensus 76 ~~~~~~ll~pg----~----~~--~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~---~v~~~l~~s----- 137 (333)
T TIGR03217 76 RAKVAVLLLPG----I----GT--VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM---DTVGFLMMS----- 137 (333)
T ss_pred CCEEEEEeccC----c----cC--HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC---eEEEEEEcc-----
Confidence 99999887531 1 11 346999999999999999999999999999999999999 888888776
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
.++++++++++++.+.++|+++|+|+||+|.++|.+++++|+++|++++ +++|++|+|||+|||+||+++|+++||
T Consensus 138 ---~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa 214 (333)
T TIGR03217 138 ---HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGA 214 (333)
T ss_pred ---cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCC
Confidence 2799999999999999999999999999999999999999999999984 699999999999999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
++||+|++|||+++||++||.++++|+.+|+++++|+.+|.++++.+-.
T Consensus 215 ~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~ 263 (333)
T TIGR03217 215 TRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVR 263 (333)
T ss_pred CEEEeecccccccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986654
No 50
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=6.1e-43 Score=464.15 Aligned_cols=429 Identities=22% Similarity=0.357 Sum_probs=352.0
Q ss_pred CCCCEEEEEcCCHHH-----------HHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVA-----------IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia-----------~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..+|||||+|.|.+. ..++++|+++|+++++++++++..+.+..+||+.|..+ .+.+.|.
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p---------~~~~~v~ 74 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP---------LTPEAVE 74 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC---------CCHHHHH
Confidence 458999999999864 35999999999999999999998888889999999865 4578999
Q ss_pred HHHHhcCCCEEEeCCCc-----ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH
Q psy15244 124 CIAKNNNVDAIHPGYGF-----LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD 198 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gf-----lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e 198 (1427)
++++++++|+|+|++|+ +++....+..+++.|++++|+++++++.+.||..+|++|+++|+|+|++. .+.+.+
T Consensus 75 ~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~ 152 (1050)
T TIGR01369 75 KIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVE 152 (1050)
T ss_pred HHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHH
Confidence 99999999999999875 22223446689999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEE
Q psy15244 199 KVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVV 278 (1427)
Q Consensus 199 ea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv 278 (1427)
++.++++++|||+||||+.|+||+|+++|++.+||.+++..+...+ ..++++||+||+|.+|+++++++|.+|+++
T Consensus 153 e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~ 228 (1050)
T TIGR01369 153 EALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCI 228 (1050)
T ss_pred HHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEE
Confidence 9999999999999999999999999999999999999987765432 236899999999779999999999999988
Q ss_pred Eeeeecccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCC
Q psy15244 279 HLYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQV 351 (1427)
Q Consensus 279 ~l~erd~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~g 351 (1427)
.+ |+.++ +.+..+..+|++.++++.++++.+.|.+++++|||.|.+++||++++ +|++|+||||||+++
T Consensus 229 ~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 229 TV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred EE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 76 44443 34566778898779999999999999999999999999999999997 478999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceee--eeCCCCCcccccC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV--FTDPASIGIRVDS 429 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~--~~~p~~~gvr~d~ 429 (1427)
++.+++.+||+||.+.++++++|++|..+ +.++. | +++ ..|.|..+.+.. .++|-....+.+
T Consensus 305 s~~l~s~atG~pl~~~~~~~alG~~l~~~---~n~i~--g---------~~~-~~~~p~~~~~~~k~p~~~~~~~~~~~- 368 (1050)
T TIGR01369 305 SSALASKATGYPIAKVAAKLAVGYGLDEL---KNPVT--G---------TTP-ASFEPSLDYVVVKIPRWDFDKFAGVD- 368 (1050)
T ss_pred chhhhhHHhCCCHHHHHHHHHcCCCchhh---cCCCc--C---------cCc-cccCcCCCeEEEEEEeCCCCCCCccc-
Confidence 98899999999999999999999998753 22121 1 333 357788887543 344432222222
Q ss_pred CCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccc------cCHHHHHhhcCCcc----------ccc
Q psy15244 430 SCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT------TNLPFLLNVFDDKK----------FLS 493 (1427)
Q Consensus 430 ~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~------tni~~l~~~l~~~~----------f~~ 493 (1427)
..+...+. ++|+|+++|+|+++|++|+.|+|.. ...|.. .+-+-|...|.||. |+.
T Consensus 369 ------~~~~~~~k-~~G~v~~~g~~~~ea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~ 440 (1050)
T TIGR01369 369 ------RKLGTQMK-SVGEVMAIGRTFEEALQKALRSLEI-GATGFDLPDREVEPDEDLWRALKKPTDRRIFAIAEALRR 440 (1050)
T ss_pred ------CCcCcccc-eeeEEEEECCCHHHHHHHHHHHhcc-CCCCCCccccCCCCHHHHHHhcCCCCCchHHHHHHHHHc
Confidence 12222223 3999999999999999999999965 445542 12355778888885 888
Q ss_pred CCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 494 GEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 494 g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
|++ +++..+|++++++++++.++|++...++.-
T Consensus 441 g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 473 (1050)
T TIGR01369 441 GVS-----VDEIHELTKIDRWFLHKIKNIVDLEEELEE 473 (1050)
T ss_pred CCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 844 566688999999999999999987777643
No 51
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=1.1e-43 Score=406.07 Aligned_cols=264 Identities=17% Similarity=0.245 Sum_probs=225.6
Q ss_pred eecCcccCCCCCCCcccCHHHHHHHHHHH-HhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 662 TDTTFRDAHQSLLATRVRTYDLKKVSPFV-ANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 662 ~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l-~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
+|||||||.|++. ..|++++|++|++.| ++ +|++.||++.++. ++..++.++.+.+..... +. +.
T Consensus 1 ~D~TlRDG~Q~~~-~~~s~e~K~~i~~~L~~~--~Gv~~IEvg~~~~--------s~~e~~av~~~~~~~~~~--~~-~~ 66 (280)
T cd07945 1 MDTTLRDGEQTSG-VSFSPSEKLNIAKILLQE--LKVDRIEVASARV--------SEGEFEAVQKIIDWAAEE--GL-LD 66 (280)
T ss_pred CCCCCCCcCcCCC-CccCHHHHHHHHHHHHHH--hCCCEEEecCCCC--------CHHHHHHHHHHHHHhhhh--cc-cc
Confidence 5999999999985 789999999999997 77 7999999997543 444456666665532110 00 00
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+....+ ..+|. ..+++|.++|++.++++.+.|+.+ .+..+++++++.|. .+.+++.
T Consensus 67 ~~~~~a---~~~~~--~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~---~v~~~~~-- 136 (280)
T cd07945 67 RIEVLG---FVDGD--KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI---EVNIYLE-- 136 (280)
T ss_pred CcEEEE---ecCcH--HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC---EEEEEEE--
Confidence 111111 22442 359999999999999999999875 34567889999998 7776654
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
||++|+ +.+++|+.++++++.++|+++|+||||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+
T Consensus 137 -d~~~~~--r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~ 213 (280)
T cd07945 137 -DWSNGM--RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAV 213 (280)
T ss_pred -eCCCCC--cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467887 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
++||++||+|++|||+|+||++||+++++|+. +|+++++|+++|.++++++++.+|+++++|||||
T Consensus 214 ~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 214 KAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred HhCCCEEEEecccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 99999999999999999999999999999964 6999999999999999999999999999999986
No 52
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=5.1e-44 Score=409.17 Aligned_cols=243 Identities=21% Similarity=0.286 Sum_probs=222.6
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|+.. .+|++++|++|++.|++ +|++.||+|+++ .++++|++++.+++.+|++.+++|+|
T Consensus 1 i~D~TlRDG~Q~~~-~~~~~~~k~~i~~~L~~--~Gv~~iEvg~~~--------~~~~~~~~~~~l~~~~~~~~~~~l~r 69 (268)
T cd07940 1 IFDTTLRDGEQTPG-VSLTPEEKLEIARQLDE--LGVDVIEAGFPA--------ASPGDFEAVKRIAREVLNAEICGLAR 69 (268)
T ss_pred CCCCCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 68999999999985 79999999999999999 899999998654 36789999999999999999999998
Q ss_pred ccccccccCCCcchHHHHHHHHHhcC----CCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAG----IDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~G----id~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
+. ..++++|.++| +++|++|+++|+.+ ++..+++.+++.|. .+.
T Consensus 70 ~~-------------~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~-- 131 (268)
T cd07940 70 AV-------------KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL---DVE-- 131 (268)
T ss_pred CC-------------HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEE--
Confidence 73 34588999999 99999999999774 44577888888888 443
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC--ceEEEeecCCcchHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN--ILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~--ipi~~H~Hnd~GlA~A 880 (1427)
|+ +|+.++++++|+.++++++.++|+++|+||||+|.++|.+++++++.+|+++|+ ++|++|+|||+|||+|
T Consensus 132 --~~----~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 132 --FS----AEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVA 205 (268)
T ss_pred --Ee----eecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHH
Confidence 33 677889999999999999999999999999999999999999999999999976 9999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCC----CCCCCChhhHHHHHHHHH
Q psy15244 881 TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTD----KRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g----~~tgidl~~L~~l~~~v~ 938 (1427)
|+++|+++||++||+|++|||+++||++||+++.+|+.++ +++++|+++|.+++++++
T Consensus 206 n~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~ 267 (268)
T cd07940 206 NSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVS 267 (268)
T ss_pred HHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999886 999999999999999976
No 53
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9e-43 Score=460.37 Aligned_cols=364 Identities=19% Similarity=0.274 Sum_probs=300.9
Q ss_pred CCCCEEEEEcCCHHHHH-----------HHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVAIR-----------VARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~r-----------iiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..++||||+|.|++.+. ++++|+++|+++++++++++..+.+..+||+.|+++ ++++.|+
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~p---------l~~e~vl 642 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEP---------LTVEDVL 642 (1102)
T ss_pred CCCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEe---------CCHHHHH
Confidence 45789999999985443 899999999999999999999999999999999974 7799999
Q ss_pred HHHHhcCCCEEEeCCCc-------------ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc
Q psy15244 124 CIAKNNNVDAIHPGYGF-------------LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT 190 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gf-------------lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~ 190 (1427)
++|+++++|+|+|++|. ++|+..|++ +...|+.++||++++++.+.||..+|++++++|||+|++.
T Consensus 643 ~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~ 721 (1102)
T PLN02735 643 NVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG 721 (1102)
T ss_pred HHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee
Confidence 99999999999999983 333333444 4456899999999999999999999999999999999986
Q ss_pred cccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEE
Q psy15244 191 TEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQIL 270 (1427)
Q Consensus 191 ~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl 270 (1427)
.+.+.+++.++++++|||+||||++|+||+||++|++.+||..+++.+.+. +++++++||+||++++|++|+++
T Consensus 722 --~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl 795 (1102)
T PLN02735 722 --IARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDAL 795 (1102)
T ss_pred --EeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEE
Confidence 688999999999999999999999999999999999999999999887654 44678999999998999999999
Q ss_pred ecccccEEEee--eeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCC
Q psy15244 271 GDKYGDVVHLY--ERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 271 ~Dg~G~vv~l~--erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpR 348 (1427)
+|++|+++... +..-....+........|++.++++.+++|.+.+.+++++|||.|++++||+++++|++||||||||
T Consensus 796 ~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR 875 (1102)
T PLN02735 796 ADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPR 875 (1102)
T ss_pred ECCCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCC
Confidence 99888877532 2111111122233445688789999999999999999999999999999999988889999999999
Q ss_pred CCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCC-CCCceeeeeCC-CCCccc
Q psy15244 349 LQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQP-STGRLDVFTDP-ASIGIR 426 (1427)
Q Consensus 349 l~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P-~~G~i~~~~~p-~~~gvr 426 (1427)
+++++|+++.+||+|++++++++++|++|.++++.++... ...+++++++ |.+.|.+ +++....+++. .+.|++
T Consensus 876 ~s~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~~-~~~~vk~~vf---~~~~~~~~d~~lg~emkStGe~~g~~ 951 (1102)
T PLN02735 876 ASRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVIP-AHVSVKEAVL---PFDKFQGCDVLLGPEMRSTGEVMGID 951 (1102)
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCccccc-CeEEEEeccC---ChhhCCCCCCCcceEEEeCCceeeec
Confidence 9999999999999999999999999999988877765443 5558999985 5556655 44444445544 455665
Q ss_pred ccCCCcCCCcee
Q psy15244 427 VDSSCPYPGLQI 438 (1427)
Q Consensus 427 ~d~~~~~~G~~I 438 (1427)
.+...++.+..+
T Consensus 952 ~~~~~a~~ka~~ 963 (1102)
T PLN02735 952 YEFSKAFAKAQI 963 (1102)
T ss_pred CCHHHHHHHHHh
Confidence 554333333333
No 54
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=3.2e-42 Score=455.12 Aligned_cols=437 Identities=21% Similarity=0.300 Sum_probs=347.1
Q ss_pred CCCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCH
Q psy15244 51 PPPPKTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNI 119 (1427)
Q Consensus 51 ~~~~~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi 119 (1427)
.|....++||||+|+|++ +..++++|+++|+++++++++++..+....+||+.|..+ .+.
T Consensus 17 ~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p---------~~~ 87 (1102)
T PLN02735 17 AGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAP---------MTP 87 (1102)
T ss_pred CCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCC---------CCH
Confidence 344456899999999997 446999999999999999999987667778899988754 457
Q ss_pred HHHHHHHHhcCCCEEEeCCCc-ccccH--HH--HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccC
Q psy15244 120 PEIICIAKNNNVDAIHPGYGF-LSERE--DF--AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194 (1427)
Q Consensus 120 ~~Ii~ia~~~~vDaI~pg~gf-lsE~~--~~--a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v 194 (1427)
+.+.++++++++|+|+|++|. ..++. .+ ...|+..|++++|+++++++.+.||..+|++|+++|||+|++. .+
T Consensus 88 e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v 165 (1102)
T PLN02735 88 ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IA 165 (1102)
T ss_pred HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--Ee
Confidence 789999999999999998753 22322 12 2467889999999999999999999999999999999999986 68
Q ss_pred CCHHHHHHHHHhcC-CcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecc
Q psy15244 195 TDVDKVKEFCDEVE-FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK 273 (1427)
Q Consensus 195 ~s~eea~~~a~~iG-yPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg 273 (1427)
.+.+++.++++++| ||+||||+.|+||+|+.+|++.+||.++++.+... ..+++++|||||.|.+|+++++++|.
T Consensus 166 ~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~ 241 (1102)
T PLN02735 166 TTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDL 241 (1102)
T ss_pred CCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcC
Confidence 89999999999998 99999999999999999999999999999876532 23678999999996699999999998
Q ss_pred cccEEEeeeecc--ccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcC-CCcEEEEeeCCCC
Q psy15244 274 YGDVVHLYERDC--SMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDK-DDNFYFIEVNPRL 349 (1427)
Q Consensus 274 ~G~vv~l~erd~--s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~-dG~~yfIEINpRl 349 (1427)
.|+++.+..... ...-+....+..+|++.++++.+++|.++|.+++++||++ |.+++||++++ +|++||||||||+
T Consensus 242 ~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 242 ADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred CCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCC
Confidence 788765521110 0111235567778998899999999999999999999995 99999999995 7899999999999
Q ss_pred CCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccC
Q psy15244 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDS 429 (1427)
Q Consensus 350 ~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~ 429 (1427)
++++.+++.+||+|+++.++++|+|.+|+++ +.++... .+ ..|.|..+.+... .| |+..
T Consensus 322 s~ss~l~s~atG~~~a~~~~klalG~~l~~~---~~~~~~~-----------~~-a~~ep~~d~~~~k-~p-----~~~f 380 (1102)
T PLN02735 322 SRSSALASKATGFPIAKMAAKLSVGYTLDQI---PNDITLK-----------TP-ASFEPSIDYVVTK-IP-----RFAF 380 (1102)
T ss_pred CCcchhhhhhhCCCHHHHHHHHHCCCChhhh---ccccccc-----------cc-hheeecCCcEEEE-cc-----cCCc
Confidence 9999999999999999999999999999765 2222211 11 3577776654432 22 1111
Q ss_pred CC-cCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccc--------cCHHHHHhhcCCcc----------
Q psy15244 430 SC-PYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT--------TNLPFLLNVFDDKK---------- 490 (1427)
Q Consensus 430 ~~-~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~--------tni~~l~~~l~~~~---------- 490 (1427)
.. ......+.+...| .|.|++.|+|++||+.|+.|.|. +...|+. .+.+-|...|.||.
T Consensus 381 ~~f~~~~~~l~~~mks-~ge~m~~gr~~~ea~~ka~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a 458 (1102)
T PLN02735 381 EKFPGSQPILTTQMKS-VGEAMALGRTFQESFQKALRSLE-TGFSGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAA 458 (1102)
T ss_pred ccccCCCcccceeeee-cceEEEecCCHHHHHHHHHHHhc-CCCCCCCccccccccCCHHHHHHhcCCCCCchHHHHHHH
Confidence 10 0122334444455 89999999999999999999994 4555652 12235777788885
Q ss_pred cccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhh
Q psy15244 491 FLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETL 530 (1427)
Q Consensus 491 f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 530 (1427)
|+.|++ +++..+|++++++++++.++|++....+.
T Consensus 459 ~~~g~~-----~~~~~~~t~id~~f~~~~~~~~~~~~~~~ 493 (1102)
T PLN02735 459 MKKGMT-----VDEIHELTFIDPWFLTQLKELVDVEQFLK 493 (1102)
T ss_pred HHcCCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 888844 66668899999999999999988776664
No 55
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=2.3e-43 Score=401.83 Aligned_cols=243 Identities=20% Similarity=0.263 Sum_probs=223.5
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|.++ +++++|+.++.+++..+++.+.+|.|
T Consensus 1 i~D~TlRDG~Q~~-~~~~~~~~k~~i~~~L~~--~Gv~~iE~g~p~--------~~~~~~e~~~~l~~~~~~~~~~~~~r 69 (259)
T cd07939 1 INDTTLRDGEQAP-GVAFSREEKLAIARALDE--AGVDEIEVGIPA--------MGEEEREAIRAIVALGLPARLIVWCR 69 (259)
T ss_pred CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEecCC--------CCHHHHHHHHHHHhcCCCCEEEEecc
Confidence 6899999999998 489999999999999999 899999998654 36788999999999889999999887
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+. .+.++.|.++|++.++++.+.|+.+ ++..+++++++.|+ .+..
T Consensus 70 ~~-------------~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~~----- 128 (259)
T cd07939 70 AV-------------KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL---FVSV----- 128 (259)
T ss_pred CC-------------HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEE-----
Confidence 52 3458899999999999999999874 56788999999998 5542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
+.++.++++++|+.++++++.++|+++|+||||+|.++|.+++++|+.+++.+| ++|++|+|||+|||+||+++|+
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi 204 (259)
T cd07939 129 ---GAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAV 204 (259)
T ss_pred ---eeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHH
Confidence 256778999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~ 939 (1427)
++||++||+|++|||+++||++||+++++|+.+ |+++++|+++|.++++++++
T Consensus 205 ~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 205 RAGATHVSVTVNGLGERAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred HhCCCEEEEecccccccccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999997 99999999999999999876
No 56
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=2.1e-43 Score=401.90 Aligned_cols=253 Identities=17% Similarity=0.147 Sum_probs=227.8
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCC----chhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA----VSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~gga----tfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
|+|||||||+|.+ +++|+.++|++|++.|++ +|++.||+|.++ .+..+.+|+.+++|+++....+ +++++.
T Consensus 1 i~D~TLRDG~q~~-~~~f~~~~~~~ia~~L~~--~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 75 (266)
T cd07944 1 ILDCTLRDGGYVN-NWDFGDEFVKAIYRALAA--AGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIA 75 (266)
T ss_pred CccCCcccCcccc-CccCCHHHHHHHHHHHHH--CCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEE
Confidence 6899999999977 599999999999999999 899999998543 3556778888888877765543 689999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
+++|..+ ...++++.+.++|++.+||+++.++++++..+++++|+.|+ .+.+.++++ ++
T Consensus 76 ~~~~~~~----------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~---~v~~~~~~a--------~~ 134 (266)
T cd07944 76 VMVDYGN----------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY---EVFFNLMAI--------SG 134 (266)
T ss_pred EEECCCC----------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC---eEEEEEEee--------cC
Confidence 9998753 23457999999999999999999999999999999999999 888877776 26
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++++++.++++++.++|+++|+|+||+|.++|++++++++++|++++ ++||++|+|||+|||+||+++|+++||++||+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~ 214 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999985 39999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHH-HHHHHH
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYS-SYWRKV 940 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~-~~v~~~ 940 (1427)
|++|||+++||++||+++++|+.+ +++++|+++|.+++ +++...
T Consensus 215 s~~G~G~~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~ 259 (266)
T cd07944 215 TVYGMGRGAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPL 259 (266)
T ss_pred ecccCCCCcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 78999999998888 566554
No 57
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=4.8e-43 Score=400.34 Aligned_cols=253 Identities=21% Similarity=0.276 Sum_probs=217.9
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||.|++. ..|++++|++|++.|++ +|++.||+|.+..... +....+. -+.++.+.. .+++.+..|.
T Consensus 1 i~D~TlRDG~Q~~~-~~~s~e~K~~i~~~L~~--~Gv~~IEvGs~~~~~~-~p~~~d~-~~~~~~l~~-~~~~~~~~~~- 73 (274)
T cd07938 1 IVEVGPRDGLQNEK-TFIPTEDKIELIDALSA--AGLRRIEVTSFVSPKW-VPQMADA-EEVLAGLPR-RPGVRYSALV- 73 (274)
T ss_pred CeeCCCCCCCcCCC-CCcCHHHHHHHHHHHHH--cCCCEEEeCCCCCccc-ccccCCH-HHHHhhccc-CCCCEEEEEC-
Confidence 68999999999986 78999999999999999 8999999985432221 0111111 122333322 2345555553
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
.| .+.+++|.++|++.|++|.++|+. +.+..+++++++.|+ .++++++|+
T Consensus 74 -----------~~--~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~---~v~~~i~~~ 137 (274)
T cd07938 74 -----------PN--LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL---RVRGYVSTA 137 (274)
T ss_pred -----------CC--HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEEeE
Confidence 12 345999999999999999999986 345677899999999 999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
|++|+.++++++|++++++++.++|+|+|+|+||+|+++|.+++++|+.+++++|+++|++|+|||+|||+||+++|+
T Consensus 138 --f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~ 215 (274)
T cd07938 138 --FGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAAL 215 (274)
T ss_pred --ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEeccccCC------CCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q psy15244 887 KAGADIVDVAADSMS------GICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 887 ~AGad~VD~av~GmG------~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~ 938 (1427)
++||++||+|++||| ||+||+++|+++++|+.+|+++++|+++|.+++++++
T Consensus 216 ~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~ 273 (274)
T cd07938 216 EAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWIS 273 (274)
T ss_pred HhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999 5899999999999999999999999999999999875
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=1.6e-41 Score=388.50 Aligned_cols=250 Identities=31% Similarity=0.433 Sum_probs=231.7
Q ss_pred eecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc
Q psy15244 662 TDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG 741 (1427)
Q Consensus 662 ~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg 741 (1427)
+|||||||+|+++ ..|++++++++++.|++ +|++.||+|+|+.++.. .+.+++|+.++.+++..+++++++|+|.
T Consensus 1 ~D~tlRDG~q~~~-~~~s~e~~~~i~~~L~~--~GV~~IEvg~~~~~~~~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~ 75 (265)
T cd03174 1 TDTTLRDGLQSEG-ATFSTEDKLEIAEALDE--AGVDSIEVGSGASPKAV--PQMEDDWEVLRAIRKLVPNVKLQALVRN 75 (265)
T ss_pred CCCCCCCcccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEeccCcCcccc--ccCCCHHHHHHHHHhccCCcEEEEEccC
Confidence 5999999999997 66899999999999999 79999999999987665 6789999999999999999999999875
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
. .++++++.++|++.++++++.| .++.+..+++.+++.|+ .+...++.+.
T Consensus 76 ~-------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~~~~~~~~ 139 (265)
T cd03174 76 R-------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL---EVEGSLEDAF 139 (265)
T ss_pred c-------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEEeec
Confidence 2 5579999999999999999999 57788899999999999 8887776552
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK 887 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~ 887 (1427)
.+ .++++++.++++.+.++|++.|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|++
T Consensus 140 ---~~---~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~ 213 (265)
T cd03174 140 ---GC---KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALE 213 (265)
T ss_pred ---CC---CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHH
Confidence 11 399999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q psy15244 888 AGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 888 AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~ 938 (1427)
+||++||+|++|||+|+||++||+++.+|+..++++++|++.|.+++++++
T Consensus 214 aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 264 (265)
T cd03174 214 AGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVE 264 (265)
T ss_pred cCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998875
No 59
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=6.1e-42 Score=376.31 Aligned_cols=208 Identities=50% Similarity=0.848 Sum_probs=189.2
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||..++++++++|||+||+....+.+.+++.++++++|||+||||+.|+||+||++|++.++|.++++.+.+++..+||+
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999998655699999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~V 330 (1427)
+++++|+||++.+|++||+++|++|+++++++|+|+.|+|+|++++++|++.|+++.+++|++.+.++++++||.|++|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCc
Q psy15244 331 EFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378 (1427)
Q Consensus 331 Eflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~ 378 (1427)
||++++ +|++||||||||+|++|+++|++||+||+++|+++++|++|+
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999997 899999999999999999999999999999999999999986
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=4.9e-41 Score=380.84 Aligned_cols=244 Identities=15% Similarity=0.132 Sum_probs=216.3
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMI 738 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml 738 (1427)
.+|+|||||||+|++. ..|++++|++|++.|++ +|++.||+|+|+. .+..++..+.+++......+.++
T Consensus 1 ~~I~D~TLRDG~Q~~~-~~~s~~~k~~i~~~L~~--~Gv~~IEvG~P~~--------~~~~~~~~~~l~~~~~~~~v~~~ 69 (262)
T cd07948 1 FKIIDSTLREGEQFAN-AFFDTEDKIEIAKALDA--FGVDYIELTSPAA--------SPQSRADCEAIAKLGLKAKILTH 69 (262)
T ss_pred CEEEECCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEECCCC--------CHHHHHHHHHHHhCCCCCcEEEE
Confidence 3699999999999985 89999999999999999 8999999998754 56778888888776666667777
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEE
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATIC 804 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~ 804 (1427)
+|+. .+.+++|.++|++.+++|.++|+.+ .+.++++++++.|+ .+.+++.
T Consensus 70 ~r~~-------------~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~---~v~~~~e 133 (262)
T cd07948 70 IRCH-------------MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGI---EVRFSSE 133 (262)
T ss_pred ecCC-------------HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEE
Confidence 7642 3459999999999999999999753 45667788889998 6665543
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 805 YAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 805 ~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
++++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+|+.+| ++|++|+|||+|||+||+++
T Consensus 134 --------da~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~ 204 (262)
T cd07948 134 --------DSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYA 204 (262)
T ss_pred --------eeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHH
Confidence 445788999999999999999999999999999999999999999999994 99999999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~ 938 (1427)
|+++||++||+|++|||+|+||+++|+++.+|+.+ +..+++|++.|++++++++
T Consensus 205 a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~ 261 (262)
T cd07948 205 ALEAGATHIDTTVLGIGERNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVA 261 (262)
T ss_pred HHHhCCCEEEEeccccccccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999865 5668999999999999986
No 61
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=1.4e-40 Score=381.04 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=217.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMIL 739 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~ 739 (1427)
|+|||||||+|++ +++|++++|++|++.|++ +||+.||+|.++. ++...+.++.+++.. +++.+.++.
T Consensus 1 i~D~TLRDG~Q~~-~~~~s~e~k~~i~~~L~~--~Gv~~IE~G~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (273)
T cd07941 1 IYDTTLRDGTQGE-GISFSVEDKLRIARKLDE--LGVDYIEGGWPGS--------NPKDTEFFARAKKLKLKHAKLAAFG 69 (273)
T ss_pred CCcCCCCCcCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEecCCcC--------CHHHHHHHHHHHHcCCCCcEEEEEe
Confidence 6899999999998 589999999999999999 8999999976543 333344455565554 589999999
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
|+.. .++. ++|. ..++.++++|++.++++.+.|+.+ ++..+++++++.|+ .+.++.+
T Consensus 70 ~~~~-~~i~--~~~~--~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~---~v~~~~~- 140 (273)
T cd07941 70 STRR-AGVK--AEED--PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR---EVIFDAE- 140 (273)
T ss_pred cccc-cCCC--ccch--HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC---eEEEeEE-
Confidence 8742 3332 3332 448999999999999999998753 56788999999999 6665422
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
+| .+.++++++|++++++++.++|+++|+|+||+|.++|.+++++++.+|+++|+++|++|+|||+|||+||+++|
T Consensus 141 --~~--~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA 216 (273)
T cd07941 141 --HF--FDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAA 216 (273)
T ss_pred --ec--cccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHH
Confidence 22 23458999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHH-hCCCC--CCCChhhHHHHHHHHHH
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLE-NTDKR--CGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~-~~g~~--tgidl~~L~~l~~~v~~ 939 (1427)
+++||++||+|++|||+|+||+++|+++++|+ ..|++ +++|++.|+++++++++
T Consensus 217 ~~aGa~~id~s~~GlGeraGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 217 VEAGATQVQGTINGYGERCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred HHcCCCEEEEeccccccccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998 44665 48999999999999863
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=4.6e-39 Score=428.89 Aligned_cols=436 Identities=22% Similarity=0.364 Sum_probs=341.5
Q ss_pred CCCCCCCEEEEEcCCHHHH-----------HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEVAI-----------RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia~-----------riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|....++||||+|+|++.+ .++++++++|+++++++++++....+..++|+.|..+ .+.+
T Consensus 2 ~~~~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p---------~~~e 72 (1066)
T PRK05294 2 PKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP---------ITPE 72 (1066)
T ss_pred CCCCCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC---------CCHH
Confidence 3345689999999999754 6999999999999999998887777788999998865 4578
Q ss_pred HHHHHHHhcCCCEEEeCCCccc-ccH--HHH--HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLS-ERE--DFA--KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT 195 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gfls-E~~--~~a--~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~ 195 (1427)
.|.++++++++|+|+|+.|... .+. .+. ..+++.|++++||++++++.+.||..+|++|+++|+|+|++. .+.
T Consensus 73 ~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~ 150 (1066)
T PRK05294 73 FVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAH 150 (1066)
T ss_pred HHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeC
Confidence 9999999999999999876422 111 222 357889999999999999999999999999999999999987 789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 196 s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+.+++.++++++|||+||||+.|.||+|+++|++.+||.++++++... ...++++||+||++.+|+++.++.|++|
T Consensus 151 s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 151 SMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDL----SPVTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred CHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCeEEEEEcccCceEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999988765432 1246899999999779999999999999
Q ss_pred cEEEeeeecc-c-cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcC-CCcEEEEeeCCCCCC
Q psy15244 276 DVVHLYERDC-S-MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDK-DDNFYFIEVNPRLQV 351 (1427)
Q Consensus 276 ~vv~l~erd~-s-~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~-dG~~yfIEINpRl~g 351 (1427)
+++.+...+- . ..-+.......+|+..++++..+++.+.|.+++++|||. |++++||++++ +|++||+|||||+++
T Consensus 227 ~~~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~ 306 (1066)
T PRK05294 227 NCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSR 306 (1066)
T ss_pred CEEEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCc
Confidence 9887632211 0 001223446678887789999999999999999999999 99999999995 688999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC 431 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~ 431 (1427)
+..+++.++|+|+.+..+++++|.++..+. ..+ .| ++. ..|.|....+.. ..| +..++
T Consensus 307 s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~---n~~--~g---------~~~-~~~~p~~~~v~~-k~p---~~~~~--- 364 (1066)
T PRK05294 307 SSALASKATGYPIAKVAAKLAVGYTLDEIK---NDI--TG---------KTP-ASFEPSLDYVVT-KIP---RFAFE--- 364 (1066)
T ss_pred ceeeeeHhhCCCHHHHHHHHHcCCChHHhc---Ccc--cC---------CCc-ccccccCCeEEE-Ecc---CCccc---
Confidence 988888899999999999999999886432 111 01 111 124344333221 123 12222
Q ss_pred cCCCceecc--cCccceEEEEEEcCCHHHHHHHHHHHhhccEEccccc------CHHHHHhhcCCcc----------ccc
Q psy15244 432 PYPGLQISP--DYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT------NLPFLLNVFDDKK----------FLS 493 (1427)
Q Consensus 432 ~~~G~~I~~--~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~t------ni~~l~~~l~~~~----------f~~ 493 (1427)
.+.+....+ ...+ +|+|++.|+|+++|++++.|.+. +...|... +.+-|...|.||. |+.
T Consensus 365 ~y~k~~~~~g~~mrk-~G~v~~~g~~~e~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~ 442 (1066)
T PRK05294 365 KFPGADRRLGTQMKS-VGEVMAIGRTFEESLQKALRSLE-IGVTGLDEDLFEEESLEELREELKEPTPERLFYIAEAFRR 442 (1066)
T ss_pred cccCCCCCccceecc-cceEEEEcCCHHHHHHHHHHhcC-CCCCCCCccccccCCHHHHHhhcCCCCCchHHHHHHHHHc
Confidence 222211111 1122 89999999999999999999994 45566432 3467888889985 778
Q ss_pred CCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 494 GEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 494 g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
|+. +++..+|++++.+++++.++|+++..++.-
T Consensus 443 g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 475 (1066)
T PRK05294 443 GAS-----VEEIHELTKIDPWFLEQIEEIVELEEELKE 475 (1066)
T ss_pred CCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 844 566688999999999999999998888754
No 63
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.3e-38 Score=420.64 Aligned_cols=435 Identities=20% Similarity=0.324 Sum_probs=341.0
Q ss_pred CCCCCCCEEEEEcCCHHH-----------HHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEVA-----------IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia-----------~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|....++||||+|+|++. ..++++++++|++++++++++........++|..|..+ .+.+
T Consensus 2 ~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep---------~~~e 72 (1068)
T PRK12815 2 PKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEP---------LTVE 72 (1068)
T ss_pred CCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECC---------CCHH
Confidence 444568999999999874 46999999999999999999887667777889887754 4579
Q ss_pred HHHHHHHhcCCCEEEeCCCccc-ccH--HHH--HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLS-ERE--DFA--KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT 195 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gfls-E~~--~~a--~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~ 195 (1427)
.+.++++++++|+|+|+.|... .+. .++ ..+++.|++++||+++++..+.||..+|++|+++|+|+|++. .+.
T Consensus 73 ~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~ 150 (1068)
T PRK12815 73 FVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESE--IVT 150 (1068)
T ss_pred HHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeC
Confidence 9999999999999999876432 221 122 257888999999999999999999999999999999999987 789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 196 s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+.+++.++++++|||+||||+.|.||+|+.+|++.+||.++++.+.... ..++++||+||++.+|+++.+++|.+|
T Consensus 151 s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g 226 (1068)
T PRK12815 151 SVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNG 226 (1068)
T ss_pred CHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999987665321 235899999999779999999999989
Q ss_pred cEEEeeeecccccc---ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC-CcEEEEeeCCCCCC
Q psy15244 276 DVVHLYERDCSMQR---RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQV 351 (1427)
Q Consensus 276 ~vv~l~erd~s~qr---~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d-G~~yfIEINpRl~g 351 (1427)
+++.+.... .+.. +....+..+|++.++++..+++.+.+.+++++||+.|.+++||+++++ |++|++|||||+++
T Consensus 227 ~~~~~~~~e-~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~ 305 (1068)
T PRK12815 227 NCITVCNME-NIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSR 305 (1068)
T ss_pred CEEEEEece-ecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCccc
Confidence 988653211 1111 122355568887799999999999999999999999999999999975 78999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC 431 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~ 431 (1427)
+..++..++|+++.+..+++++|.+|+++.. ++ .|.. + ..|.|....+ ....| ...++
T Consensus 306 s~~l~~~atG~pl~~~~~~~alG~~l~ei~~---~i--~g~~---------~-a~~ep~~d~~-~~k~p---~~~f~--- 363 (1068)
T PRK12815 306 SSALASKATGYPIAKIAAKLAVGYTLNELKN---PV--TGLT---------Y-ASFEPALDYV-VVKFP---RWPFD--- 363 (1068)
T ss_pred chhhhhHhhCCcHHHHHHHHHcCCChHHhcC---Cc--cCCc---------c-cccCCccceE-EEEec---cCccc---
Confidence 9999999999999999999999999876532 11 1210 1 1344554442 11223 11222
Q ss_pred cCCC--ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccccc-------CHHHHHhhcCCcc----------cc
Q psy15244 432 PYPG--LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT-------NLPFLLNVFDDKK----------FL 492 (1427)
Q Consensus 432 ~~~G--~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~t-------ni~~l~~~l~~~~----------f~ 492 (1427)
.+.+ ........| .|+|++.|+|+++|++|+.+++. +...|... +-+-|.+.|.||. |+
T Consensus 364 ~y~~~~~~~g~kmks-~G~v~~ig~~~eea~~ka~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~ 441 (1068)
T PRK12815 364 KFGYADRTLGTQMKA-TGEVMAIGRNFESAFQKALRSLE-IKRNGLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALR 441 (1068)
T ss_pred cccCccccccceecc-cceEEEecCCHHHHHHHHHHhhc-CCCCCCCCccccccCCHHHHHHHhccCCCChHHHHHHHHH
Confidence 2222 122221222 59999999999999999999994 45555531 3466788889985 88
Q ss_pred cCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 493 SGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 493 ~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
.|++ +++..+|++++++++++.++|++...++.-
T Consensus 442 ~g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 475 (1068)
T PRK12815 442 RGIT-----YEEIHELTKIDPFFLQKFEHIVALEKKLAE 475 (1068)
T ss_pred cCCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 8844 566678999999999999999998777753
No 64
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=3.1e-38 Score=379.89 Aligned_cols=379 Identities=16% Similarity=0.209 Sum_probs=290.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
||||+|+|..++.++++|+++|+++++++.+++ ++...+||+.+.++ |.|.+.|.++|+++++|+|+|..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~--~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVIN--------MLDGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchhhhCceEEEcC--------CCCHHHHHHHHHHhCCCEEEecc
Confidence 699999999999999999999999999988776 45667899988753 57889999999999999999988
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 139 GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 139 gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
+..+. .....+++.|++ +.|++++++++.||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||||+.
T Consensus 71 e~v~~--~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~ 145 (380)
T TIGR01142 71 EAIAT--DALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVM 145 (380)
T ss_pred CccCH--HHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECC
Confidence 76542 234567888976 568999999999999999985 89999999987 6889999999999999999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEE
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
|+||+|+++|++.+||.++++.+...+. ..++++++|+||+++.|+++.++.+.+|++... ......+.........
T Consensus 146 g~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 222 (380)
T TIGR01142 146 SSSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFC-APIGHRQIDGDYHESW 222 (380)
T ss_pred CcCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe-cCcceEEeCCeeEEEE
Confidence 9999999999999999999987654221 124689999999977899999987766765432 1111222233333356
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCC
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l 377 (1427)
.|+ .++++.++++.+.+.+++++||+.|++|+||+++++ ++||+|||||++++...+....|+|+++++++.++|.++
T Consensus 223 ~p~-~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~ 300 (380)
T TIGR01142 223 QPQ-EMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPI 300 (380)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCC
Confidence 777 599999999999999999999999999999999866 599999999999875444444699999999999999987
Q ss_pred ccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHH
Q psy15244 378 TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYK 457 (1427)
Q Consensus 378 ~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~ 457 (1427)
+... ..+.++...+..+... .+.-..|... . ...+++++. -+..+|.. ....+|+|++.|.|.+
T Consensus 301 ~~~~-------~~~~~~~~~i~~~~~g-~~~~~~~~~~-~--~~~~~~~~~-~~~k~~~~----~~~~~G~v~~~~~s~~ 364 (380)
T TIGR01142 301 PGIP-------QLGPAASAVIKAKVTG-YSPAFRGLEK-A--LSVPNTQVR-LFGKPEAY----VGRRLGVALATAKSVE 364 (380)
T ss_pred CCcc-------ccCCceEEEEEccccc-ccchhhHHHH-H--HcCCCCEEE-ECCCCcCC----CCCcCEEEEEecCCHH
Confidence 6321 1222333344433221 0100011111 1 112333332 11233422 2345999999999999
Q ss_pred HHHHHHHHHhhccEEc
Q psy15244 458 SSCEKMRRALEETQVS 473 (1427)
Q Consensus 458 eA~~r~~raL~e~~I~ 473 (1427)
++.+++.++++.++|+
T Consensus 365 ~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 365 AARERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHHHHhhccCC
Confidence 9999999999988875
No 65
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=7.5e-38 Score=390.29 Aligned_cols=380 Identities=16% Similarity=0.192 Sum_probs=301.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+.+||+|+|+|..+..++++|+++|+++++++.+++ ++...+||+.+.. +|.|.+.+.++|++ +|.|
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~--------~~~D~~~l~~~a~~--~dvI 87 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVG--------SFDDRAAVREFAKR--CDVL 87 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeC--------CCCCHHHHHHHHHH--CCEE
Confidence 4568999999999999999999999999999977665 6777889987653 37889999999998 7877
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
....... +....+.+++.|++ ++|+++++..++||..+|++++++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 88 t~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvK 162 (577)
T PLN02948 88 TVEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLK 162 (577)
T ss_pred EEecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEE
Confidence 6543322 24556888999987 57999999999999999999999999999987 6889999999999999999999
Q ss_pred ecCCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 215 AAFGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 215 P~~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
|+.|+ ||+|+++|++.+||.++++.+.. .+..+++|+||++.+|++|.++++.+|++..+ ...+..++++..
T Consensus 163 P~~ggs~g~Gv~~v~~~~eL~~a~~~~~~------~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~-p~~E~~~~~~~~ 235 (577)
T PLN02948 163 SRRLAYDGRGNAVAKTEEDLSSAVAALGG------FERGLYAEKWAPFVKELAVMVARSRDGSTRCY-PVVETIHKDNIC 235 (577)
T ss_pred eCCCCCCCCCeEEECCHHHHHHHHHHhhC------CCCcEEEEecCCCCeEEEEEEEECCCCCEEEe-cCcccEEECCee
Confidence 99877 79999999999999999876532 14689999999977999999999888877653 334455555555
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.....|+ .++++.++++.+.|.+++++|++.|++++||+++++|++||+|||||++++..++...+++|+++.++|.++
T Consensus 236 ~~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~l 314 (577)
T PLN02948 236 HVVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVL 314 (577)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHc
Confidence 5667898 699999999999999999999999999999999999999999999999976446666899999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCC-CccCCCC-CceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPK-RNFQPST-GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~-~~f~P~~-G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
|.|++... ....+|+...+..++.. .++.+.. +.......|+ ..+++. ..+|.. ....+|+|++
T Consensus 315 Glpl~~~~------~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~-~~v~~y---gk~~~r----~~rkmGhV~~ 380 (577)
T PLN02948 315 GLPLGDTS------MKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPG-ASVHWY---GKPEMR----KQRKMGHITV 380 (577)
T ss_pred CCCCCCcc------ccCCcEEEEEEeccccccccccchhhHHHHHhhCCC-CEEEEe---cCCCCC----CCCeeEEEEE
Confidence 99986321 22345777777766432 1232221 2111122232 234443 122322 1356999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEc
Q psy15244 452 HTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
.|.|.+++.++++.+++.+.+.
T Consensus 381 ~g~~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 381 VGPSAAEVEARLDQLLAEESAD 402 (577)
T ss_pred ecCCHHHHHHHHHHHHhhhccC
Confidence 9999999999999999876654
No 66
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=3.1e-37 Score=369.57 Aligned_cols=363 Identities=18% Similarity=0.278 Sum_probs=286.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
|++|+|+|+|..+..++.+++++|+++++++.+++ ++....||+.+.. +|.|.+.+.++++ .+|.|.+
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~--~pa~~~ad~~~~~--------~~~D~~~l~~~a~--~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD--SPAAQVADEVIVA--------DYDDVAALRELAE--QCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchhHhCceEEec--------CCCCHHHHHHHHh--cCCEEEe
Confidence 56999999999999999999999999999977665 5667789988764 3788999999998 4888854
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
..+ .-.....+.+++.+ .++|++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|+||+
T Consensus 70 e~e--~i~~~~l~~l~~~~--~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~ 143 (372)
T PRK06019 70 EFE--NVPAEALDALAARV--PVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTR 143 (372)
T ss_pred CcC--CCCHHHHHHHhcCC--eeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeC
Confidence 333 22344445555553 468999999999999999999999999999987 789999999999999999999999
Q ss_pred CCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 217 FGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 217 ~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
.|| ||+|++++++.+||..+++.+ ++.++++|+||++++|+++.++.+.+|+++.+ ......++.+....
T Consensus 144 ~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~-p~~e~~~~~gi~~~ 214 (372)
T PRK06019 144 RGGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFY-PLVENVHRNGILRT 214 (372)
T ss_pred CCCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEe-CCcccEEeCCEEEE
Confidence 865 899999999999999988754 35789999999988999999999888887653 22223444454555
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
...|+ .+++++.+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++..++++|+++.+++..+|.
T Consensus 215 ~~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Gl 293 (372)
T PRK06019 215 SIAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGL 293 (372)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCC
Confidence 67888 58999999999999999999999999999999998899999999999999877888899999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCC-CcCCCceecccCccceEEEEEEcC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSS-CPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~-~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
|++.. ...+.++...|..++. . ..+.......| +..+++.+. ...+ +.-+|+|.+.|.
T Consensus 294 pl~~~-------~~~~~~~m~nilg~~~---~--~~~~~~~~~~~-~~~~~~ygk~~~~~--------~rk~Ghv~~~~~ 352 (372)
T PRK06019 294 PLGTT-------RLLSPAVMVNLLGDDW---L--EPRWDALLALP-GAHLHLYGKAEARP--------GRKMGHVTVLGD 352 (372)
T ss_pred CCCCc-------cccCceEEEEEECchh---h--hhHHHHHhhCC-CCEEEECCCCCCCC--------CCceEEEEeecC
Confidence 87522 2233355555654331 0 01111111122 223444411 1122 334999999999
Q ss_pred CHHHHHHHHHHHhh
Q psy15244 455 TYKSSCEKMRRALE 468 (1427)
Q Consensus 455 ~~~eA~~r~~raL~ 468 (1427)
|.+++.++++++..
T Consensus 353 ~~~~~~~~~~~~~~ 366 (372)
T PRK06019 353 DVEALLAKLEALAP 366 (372)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999876
No 67
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=6.2e-37 Score=370.50 Aligned_cols=382 Identities=16% Similarity=0.236 Sum_probs=288.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
.+||||+|.|..+..++++++++|+++++++.+++ ++...++|..+.++ +.|.+.++++++++++|+|+|
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~--~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~id~vi~ 81 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSHVID--------MLDGDALRAVIEREKPDYIVP 81 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchHHhhhheEECC--------CCCHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999999999988776 45556788877653 467899999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
+.+... ......+++.|+++ .|++++++++.||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||||
T Consensus 82 ~~e~~~--~~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP 156 (395)
T PRK09288 82 EIEAIA--TDALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKP 156 (395)
T ss_pred eeCcCC--HHHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEe
Confidence 876543 23345567779874 49999999999999999998 48999999987 78999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
..|+||+|+++|++.+||.++++.+...++ -.++.++|||||+++.|+++.++.+++|........+ ..+..+....
T Consensus 157 ~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (395)
T PRK09288 157 VMSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRE 233 (395)
T ss_pred CCCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEEECCEEEE
Confidence 999999999999999999999987654321 1136899999999889999999998765554432211 1111122233
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
...|+ .++++..+++.+.+.+++++||+.|++|+||+++++ .+|+||+|||+++...++....|+|+++++++.++|.
T Consensus 234 ~~~p~-~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~ 311 (395)
T PRK09288 234 SWQPQ-PMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCC
Confidence 45677 589999999999999999999999999999999877 5999999999998754443345999999999999998
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++++.. ...+..+.++++.+.. .....|.......|+. .+++. |. ........+|+|++.|+|
T Consensus 312 ~~~~~~~-------~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~g~-~~~~~------~k-~~~~~~~~lG~v~~~g~~ 375 (395)
T PRK09288 312 PIPDIRL-------YSPAASAVILAEGESA-NPSFDGLAEALAVPGT-DVRLF------GK-PEIRGGRRMGVALATGED 375 (395)
T ss_pred CCCcccc-------cCCceeEEEecccccc-ccchhhHHHHhcCCCC-EEEEe------cC-CCCCCCCeeEEEEeecCC
Confidence 7743221 2223333445443211 1111121111111211 22222 11 112223459999999999
Q ss_pred HHHHHHHHHHHhhccEEcc
Q psy15244 456 YKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~G 474 (1427)
.++|.+++.++++.+++.|
T Consensus 376 ~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 376 VEEAREKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHHHHHHhheeecc
Confidence 9999999999999999987
No 68
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=3.7e-38 Score=359.39 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=213.4
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCcee
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQ 736 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~q 736 (1427)
..+|||||||+|++. ..|++++|++|++.|++ +|++.||++.|+. ++...+.++.+.+.. +++.+.
T Consensus 3 ~~~d~tlRDG~Q~~g-~~~s~~~Ki~ia~~L~~--~Gv~~IE~gfP~~--------~~~e~e~~~~i~~~~~~~~~~~~~ 71 (284)
T cd07942 3 IWCSVDLRDGNQALA-EPMSVEQKLRFFKLLVK--IGFKEIEVGFPSA--------SQTDFDFVRELIEEDLIPDDVTIQ 71 (284)
T ss_pred cccCCCCCCcCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHHccCCCCCCEEE
Confidence 357999999999985 78999999999999999 8999999987653 445567777775542 467777
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhc--CCC--EEEEeccCChHH--------------HHHHHHHHHHHhcCCCcE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQA--GID--IFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTI 798 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gid--~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~ 798 (1427)
.|.|. .+.++++|.++ |++ .+.+|.+.|+.+ .+.++++++++.|....-
T Consensus 72 al~r~-------------~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~ 138 (284)
T cd07942 72 VLTQA-------------REDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPE 138 (284)
T ss_pred EEcCC-------------ChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Confidence 88775 34458888887 676 799999999875 356678889988861000
Q ss_pred EEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC---CC---CEEEEccccCcCCHHHHHHHHHHHHHHcC---CceEEE
Q psy15244 799 VEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES---GA---QVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHV 869 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~---Ga---d~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi~~ 869 (1427)
....+. |..+|++|.+++|++++++.+.++ |+ ++|+|+||+|.++|.+++++++.+++.+| +++|++
T Consensus 139 ~~~~~~----~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~ 214 (284)
T cd07942 139 TDWRFE----YSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISL 214 (284)
T ss_pred ceEEEE----ECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 112223 347899999999999999999887 54 49999999999999999999999999986 567999
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
|+|||+|||+||+++|+++||++||+|++|+|+|+||++||+++++|+..|+++++|+++|.++++++++
T Consensus 215 H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~GeRaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 215 HPHNDRGTGVAAAELALLAGADRVEGTLFGNGERTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred EecCCCchHHHHHHHHHHhCCCEEEeeCccCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998999999999999999999863
No 69
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=7.6e-39 Score=360.68 Aligned_cols=223 Identities=25% Similarity=0.402 Sum_probs=196.2
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccccc
Q psy15244 667 RDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVG 746 (1427)
Q Consensus 667 RDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vg 746 (1427)
|||+|+++ ..|++++|++|++.|++ +|+++||+| +.+.++++|+.++.+++.++++.+++++|.
T Consensus 1 RDG~Q~~~-~~~~~~~k~~i~~~L~~--~Gv~~iEvg--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----- 64 (237)
T PF00682_consen 1 RDGEQSNG-VAFSTEEKLEIAKALDE--AGVDYIEVG--------FPFASEDDFEQVRRLREALPNARLQALCRA----- 64 (237)
T ss_dssp THHHHHCS-TT--HHHHHHHHHHHHH--HTTSEEEEE--------HCTSSHHHHHHHHHHHHHHHSSEEEEEEES-----
T ss_pred CCcCcCCC-CCcCHHHHHHHHHHHHH--hCCCEEEEc--------ccccCHHHHHHhhhhhhhhcccccceeeee-----
Confidence 99999997 45999999999999999 799999999 346789999999999999999999999985
Q ss_pred ccCCCcchHHHHHHHHHhcCCCEEEEeccCCh--------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC
Q psy15244 747 YSNYSPAEVGAFCRLASQAGIDIFRVFDPLNS--------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 747 y~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd--------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p 812 (1427)
..+.++..++.+.++|+++++++.++|+ ++.+..+++.+++.|. .+. + +.+
T Consensus 65 ----~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~---~v~----~----~~~ 129 (237)
T PF00682_consen 65 ----NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY---EVA----F----GCE 129 (237)
T ss_dssp ----CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS---EEE----E----EET
T ss_pred ----hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC---ceE----e----Ccc
Confidence 3444666667777799999999999999 7788999999999999 552 2 255
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
+.++++++|+.++++.+.++|+|+|+||||+|.++|.+++++|+.+++++|+++|++|+|||+|||+||+++|+++||++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 130 DASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 77799999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCC
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTD 920 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g 920 (1427)
||+|++|||+|+||++||+++++|+.+|
T Consensus 210 id~t~~GlG~~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 210 IDGTLGGLGERAGNAPLEELVAALERMG 237 (237)
T ss_dssp EEEBGGGGSSTTSB-BHHHHHHHHHHT-
T ss_pred EEccCccCCCCCCCccHHHHHHHHhhcC
Confidence 9999999999999999999999999865
No 70
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=1.9e-37 Score=353.51 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=203.5
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCC-----ccEEeccCCCchhhhhhccccChHHHHHHHHHhCC-C
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNN-----LYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP-N 732 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G-----~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p-~ 732 (1427)
|.|+|||||||.|++. . |++++|++|++.|++ +| ++.||+++ | .+...+.++.+.+... .
T Consensus 1 i~i~d~tlRDG~Q~~~-~-~~~~~Kv~i~~~L~~--~G~~~~~v~~IE~~s---------~-~~~d~~~v~~~~~~~~~~ 66 (279)
T cd07947 1 IWITDTTFRDGQQARP-P-YTVEQIVKIYDYLHE--LGGGSGVIRQTEFFL---------Y-TEKDREAVEACLDRGYKF 66 (279)
T ss_pred CEEEeCCCCCcCCCCC-C-CCHHHHHHHHHHHHH--cCCCCCccceEEecC---------c-ChHHHHHHHHHHHcCCCC
Confidence 5799999999999975 4 599999999999999 79 99999832 2 2244555666555432 2
Q ss_pred CceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcE
Q psy15244 733 IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTI 798 (1427)
Q Consensus 733 ~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~ 798 (1427)
..+..++|+. .+.+++|.++|++.+.+|.|.|+.+ .+..+++++++.|. .
T Consensus 67 ~~v~~~~r~~-------------~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~---~ 130 (279)
T cd07947 67 PEVTGWIRAN-------------KEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGI---K 130 (279)
T ss_pred CEEEEEecCC-------------HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC---e
Confidence 3455566652 4559999999999999999999875 45678889999998 7
Q ss_pred EEEEEEeeccCCCCCCCCCCH-----HHHHHHHHHHHHCCCC-EEEEccccCcCCH-------HHHHHHHHHHHHH--cC
Q psy15244 799 VEATICYAGDLTNPNKKKYSL-----NYYEDLAKQLVESGAQ-VLCLKDMAGLLKP-------TAAKLLIGSFREK--YP 863 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~~~~~-----~~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P-------~~~~~lv~~lr~~--~p 863 (1427)
+++++ + |+++.+. +|+.++++.+.++|++ +|+||||+|.++| .++++++++++++ +|
T Consensus 131 v~~~~---e-----d~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p 202 (279)
T cd07947 131 PRCHL---E-----DITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVP 202 (279)
T ss_pred EEEEE---E-----cccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCC
Confidence 77654 2 3334444 5788888888889999 8999999999998 6899999999998 56
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHH
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~ 938 (1427)
+++|++|+|||+|||+||+++|+++||++||+|++|||+++||++||+++++|+.+ |+++++|+++|.+++++++
T Consensus 203 ~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~ 278 (279)
T cd07947 203 SENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFE 278 (279)
T ss_pred CceEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999998 9999999999999999875
No 71
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=1e-35 Score=362.39 Aligned_cols=386 Identities=15% Similarity=0.144 Sum_probs=281.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccC---ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFS---AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s---~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
|||++||++.+..+..++++|+++|++++++++..+... .....++....+ .+.+.+.++++++++++|
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~l~~~~~~~~~d 72 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI--------INGDIDDLVEFLRKLGPE 72 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh--------cCCCHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999998765422 122223322222 236789999999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC---
Q psy15244 133 AIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF--- 209 (1427)
Q Consensus 133 aI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy--- 209 (1427)
+|+|+.+... ...+..++..|++ +|++++++..++||..||++++++|||+|++. .+.+.+++.++++++||
T Consensus 73 ~vi~~~e~~~--~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~~~~e~~~~~~~~g~~~~ 147 (416)
T PRK07206 73 AIIAGAESGV--ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTADWEEAEAWLRENGLIDR 147 (416)
T ss_pred EEEECCCccH--HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecCCHHHHHHHHHhcCCCCC
Confidence 9999875422 2234455667776 48999999999999999999999999999986 68899999999999998
Q ss_pred cEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEE--eeeecc
Q psy15244 210 PVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVH--LYERDC 285 (1427)
Q Consensus 210 PvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~--l~erd~ 285 (1427)
|+||||+.|+||+||++|++.+||.++++++.... ..++ +..+++|+||+ |.|++++++.. +|+++. +..+..
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~-G~E~sv~~~~~-~G~~~~~~~~~~~~ 224 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLI-GTEYVVNFVSL-DGNHLVTEIVRYHK 224 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEccc-cEEEEEEEEEE-CCEEEEEEeEEeee
Confidence 99999999999999999999999999998875421 1122 46899999999 78999999974 355443 222211
Q ss_pred ccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCcEEEEeeCCCCCCc--hhHHHHHhCC
Q psy15244 286 SMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQVE--HTLSEEITGI 362 (1427)
Q Consensus 286 s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~dG~~yfIEINpRl~ge--~~vte~~tGi 362 (1427)
........+.........+....+++.+.+.++++++|+. |++|+||+++++| +|+||||||++|+ ..+++.++|+
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R~~G~~~~~~~~~~~G~ 303 (416)
T PRK07206 225 TSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGARLDGGLHPDVARLATGD 303 (416)
T ss_pred cccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCccCCCCccchhhhhcCc
Confidence 1111111111111111135677899999999999999996 9999999999877 8999999999987 4678899999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC----CCCCcccccCCCcCCCcee
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD----PASIGIRVDSSCPYPGLQI 438 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~----p~~~gvr~d~~~~~~G~~I 438 (1427)
|+.+++++.++|.+.... ..+......+++....+. .|..|++..+.. ...+++..-..+...|+.|
T Consensus 304 d~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v 374 (416)
T PRK07206 304 SQLDATVESLADPDVFRE-TLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYV 374 (416)
T ss_pred CHHHHHHHHHhCchhhcc-ccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCCchhheEEecCCCCCc
Confidence 999999999999864211 111112223333222222 244566654321 1122332222346789999
Q ss_pred cccCcc--ceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 439 SPDYDS--LLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 439 ~~~~Ds--~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.+..|+ .+|++++.|+|.+++.+..+++-
T Consensus 375 ~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 375 PQTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred cCceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 877664 49999999999999888765543
No 72
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=2.7e-35 Score=350.81 Aligned_cols=309 Identities=20% Similarity=0.310 Sum_probs=257.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
+|+|+|.|+.+.+++++|+++|+++++++.+++ ++...+||+.+.. +|.|.+.|.+++++ +|.|.+.+
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~--~p~~~~ad~~~~~--------~~~d~~~i~~~a~~--~dvit~e~ 68 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN--SPAVQVADHVVLA--------PFFDPAAIRELAES--CDVITFEF 68 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC--CChhHhCceeEeC--------CCCCHHHHHHHHhh--CCEEEeCc
Confidence 489999999999999999999999999877665 6777889998743 37888999999987 57776544
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCC
Q psy15244 139 GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFG 218 (1427)
Q Consensus 139 gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~G 218 (1427)
+.++ ......+++.|++ ++|++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|+||..|
T Consensus 69 e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~ 143 (352)
T TIGR01161 69 EHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTG 143 (352)
T ss_pred CcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 4332 3456778888876 56999999999999999999999999999987 78899999999999999999999998
Q ss_pred C-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEE
Q psy15244 219 G-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 219 g-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
+ ||+|+++|++.+|+.++++.. ++..+++||||++++|++|.++.+.+|++.. +......++.+......
T Consensus 144 g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~-~~~~~~~~~~g~~~~~~ 214 (352)
T TIGR01161 144 GYDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAF-YPVVENIHQDGILRYVV 214 (352)
T ss_pred CCCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEE-ECCcccEEeCCEEEEEE
Confidence 6 999999999999999888653 2458999999998899999999887787654 33323344444445567
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCC
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l 377 (1427)
.|+ .++++..+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++...+++|.++.+++.++|.++
T Consensus 215 ~p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l 293 (352)
T TIGR01161 215 APA-AVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPL 293 (352)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCC
Confidence 788 6899999999999999999999999999999999989999999999999887778889999999999999999998
Q ss_pred ccccccccCcccceEEEEEEeecC
Q psy15244 378 TELGLCQEKITPQGCAIQCHLRTE 401 (1427)
Q Consensus 378 ~~l~l~q~~i~~~g~ai~~ri~ae 401 (1427)
+.. .....++...+...
T Consensus 294 ~~~-------~~~~~~~m~n~~~~ 310 (352)
T TIGR01161 294 GST-------ELLLPSVMVNLLGT 310 (352)
T ss_pred CCc-------cccCCEEEEEEecC
Confidence 632 22333555566544
No 73
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6.1e-35 Score=353.86 Aligned_cols=400 Identities=15% Similarity=0.164 Sum_probs=283.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++||||+|.|.-...+++++++.++.+.+...+.+. .. +...... ...-++.|.+.|+++|+++++|+|++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~-g~----~~~~~~~----~~~~~~~d~~~l~~~a~~~~iD~Vv~ 74 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNG-GF----PDDELLP----ADSFSILDKSSVQSFLKSNPFDLIVV 74 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCch-HH----hcccccc----ccCcCcCCHHHHHHHHHHcCCCEEEE
Confidence 469999999988888999999999654433333322 11 1111000 00124689999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+.+... ...+++.|+++|++++||+..++++++||..+|++|+++|||+|++. .+.+.+++.+++++++||+||||.
T Consensus 75 g~E~~l-~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~--~~~~~~ea~~~~~~~~~PvVVKp~ 151 (426)
T PRK13789 75 GPEDPL-VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYK--TFTEYSSSLSYLESEMLPIVIKAD 151 (426)
T ss_pred CCchHH-HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeE--eeCCHHHHHHHHHhcCCCEEEEeC
Confidence 874211 12577889999999999999999999999999999999999999986 688999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eeccc------c
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCS------M 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s------~ 287 (1427)
.++||+||++|++.+|+.++++.+... ..|| +..++|||||+ |+|+++.++.|+. +++.+. .+|.. .
T Consensus 152 ~~~~gkGV~vv~~~eel~~a~~~~~~~--~~~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~d~ 227 (426)
T PRK13789 152 GLAAGKGVTVATEKKMAKRALKEIFKD--KKFGQSGNQVVIEEFME-GQEASIFAISDGD-SYFLLPAAQDHKRAFDGDQ 227 (426)
T ss_pred CCCCCCcEEEECCHHHHHHHHHHHHhh--ccccCCCCeEEEEECcC-CeEEEEEEEECCC-EEEEccceEecccccCCCC
Confidence 999999999999999999999987654 2344 34899999999 6999999999864 443331 22211 1
Q ss_pred ccccceEEEEccCCCCCHHHHHHHHH-HHHHHH---HHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAITE-TSVRLA---KSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~l~---~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
..+...+..++|++.++++..+++.+ .+.+++ ++.| |+|+.++||+++++|++|++|+|+|++.. .+..-...
T Consensus 228 g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l 307 (426)
T PRK13789 228 GPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAML 307 (426)
T ss_pred CCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccC
Confidence 11234567888998789888888865 344444 5556 78999999999998999999999999742 33333335
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCcccccC-CCcCCCcee
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVDS-SCPYPGLQI 438 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d~-~~~~~G~~I 438 (1427)
..||++.+++++.|+. +...+.. ..++++.. +.+..... ..+..|. |. +......++++.. +....+..+
T Consensus 308 ~~dl~~~~~~~~~g~l-~~~~~~~----~~~~s~~v-v~a~~gyp-~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~~ 379 (426)
T PRK13789 308 DGDLLELLYAASTGKI-KVVNLKL----KQGAAAVV-VLAAQGYP-DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGKV 379 (426)
T ss_pred CCCHHHHHHHHHcCCC-CCCCcee----cCCceEEE-EECcCCcC-CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCEE
Confidence 6899999999999962 2222211 12344433 33332221 1233454 33 3211113444431 111122223
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. ..+.+..|++.|.|.++|+++++++++.+++.|. ++.|..
T Consensus 380 ~t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~Dig~ 423 (426)
T PRK13789 380 FS-SGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRKDIGR 423 (426)
T ss_pred Ee-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEeccccc
Confidence 22 2455677889999999999999999999999984 566543
No 74
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=2.7e-35 Score=349.80 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=276.3
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|+. +..++++++++++..|++ .|++.||+|.++. .+++|+..+.+........+
T Consensus 1 i~D~TlRDG~q~~-~~~~~~~~ki~i~~~l~~--~Gv~~iE~g~p~~--------~~~~~~~~~~~~~~~~~~~~----- 64 (344)
T TIGR02146 1 IIDSTLREGEQFP-GANFSTEQKIEIAKALDE--FGIDYIEVTHPAA--------SKQSRIDIEIIASLGLKANI----- 64 (344)
T ss_pred CCCCCCCccCcCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHhcCCCcEE-----
Confidence 6899999999977 478999999999999999 8999999997653 34455555555543322222
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHH--------------HHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPN--------------LVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~--------------~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+++.... ...++.+.++|++.++++.+.+++++ +..+++.+++.|. .+...++
T Consensus 65 ----~~~~~~~----~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~---~~~~~~~-- 131 (344)
T TIGR02146 65 ----VTHIRCR----LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGL---EVRFSAE-- 131 (344)
T ss_pred ----EEECCCC----HHHHHHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEe--
Confidence 2332221 22377888999999999999998753 3457778888887 5544433
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
++.+.+.++++++++.+.++|++.++++||.|.++|.+++.+|..+++..|++++++|+|||.|+|++|+++|+
T Consensus 132 ------~~~~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al 205 (344)
T TIGR02146 132 ------DTFRSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAI 205 (344)
T ss_pred ------eCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 23478899999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYS 965 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~ 965 (1427)
.+||+++|+|++|||+|+||++++.++..|... ++.. +|+..+.++++.+....+++++.+.|++|.++|.|.+++|.
T Consensus 206 ~~ga~~~d~s~~glG~~~G~~~l~~~~~~L~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~ 284 (344)
T TIGR02146 206 EGGATIVDTTVLGIGERNGITPLGGILARLYYHTPMYV-YKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHV 284 (344)
T ss_pred HcCCCEEEEEeeeeeCCCCCccHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhH
Confidence 999999999999999999999999999988865 4443 79999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHH
Q psy15244 966 SYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTAN 1025 (1427)
Q Consensus 966 ~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~ 1025 (1427)
+.+.+.+..|++++ |+..|..+.++.++.+|. ++++..++++|+ ..+++.+.+.+++
T Consensus 285 ~~~~~~~~~y~~~~-~s~~g~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (344)
T TIGR02146 285 KAILGNPRTYEFLP-PEVFGRKRHILIARLTGK--HAIKARKEKLGVKLIEEELKRVTAKIK 343 (344)
T ss_pred HHHhCCcccCCCCC-HHHcCCcceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 99999999999999 666667788899999996 489999999999 6667777777664
No 75
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=6e-35 Score=388.08 Aligned_cols=365 Identities=19% Similarity=0.325 Sum_probs=292.2
Q ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
..+||||+|.|++ ++.++++++++|+++++++++++..+.....+|..|..+ .+.+.+++
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep---------~~~e~vl~ 623 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEP---------LTFEDVMN 623 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEec---------CCHHHHHH
Confidence 3579999999986 568899999999999999999988777778899887743 45899999
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
+++++++|+|+|++|... ...++..|++.|++++|+++++++.+.||..++++|+++|||+|++. .+.+.+++.+++
T Consensus 624 i~~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~ 700 (1050)
T TIGR01369 624 IIELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFA 700 (1050)
T ss_pred HHhhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHH
Confidence 999999999999987532 23578899999999999999999999999999999999999999987 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe--ee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL--YE 282 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l--~e 282 (1427)
+++|||+||||++++||+||.+|++.+||.++++++... ..+++++||+||++++|++|++++|+ |+++.. .+
T Consensus 701 ~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e 775 (1050)
T TIGR01369 701 SEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIME 775 (1050)
T ss_pred HhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEE
Confidence 999999999999999999999999999999999876543 23578999999999999999999986 454432 23
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
+......+........|+..++++..+++.+++.+++++||+.|++|+||++++ |++|+||+|||++++.++++.++|+
T Consensus 776 ~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p~vs~atGi 854 (1050)
T TIGR01369 776 HIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVPFVSKATGV 854 (1050)
T ss_pred eecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHHHHHHHHCC
Confidence 211111122334456687789999999999999999999999999999999985 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccC
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDY 442 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~ 442 (1427)
|+++..+++++|.++++++... .......++...++ +.-++.. ....+.|..
T Consensus 855 ~l~~~~~~~~lG~~l~~~~~~~-~~~~~~~~vK~p~f-----------------------~~~~~~~----~d~~lg~em 906 (1050)
T TIGR01369 855 PLIKLATRVMLGKKLEELGVGK-EKEPKYVAVKEPVF-----------------------SFSKLAG----VDPVLGPEM 906 (1050)
T ss_pred CHHHHHHHHHcCCCcccccccc-CCCCCeEEEEeccC-----------------------ChhhcCC----CCCcCCcee
Confidence 9999999999999987553211 11122333332222 1111110 001122223
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 443 DSLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 443 Ds~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.| .|-++..|+|+++|+.|+..+.
T Consensus 907 ks-tge~~~~g~~~~~a~~ka~~~~ 930 (1050)
T TIGR01369 907 KS-TGEVMGIGRDLAEAFLKAQLSS 930 (1050)
T ss_pred Ee-cCceEecCCCHHHHHHHHHHhC
Confidence 33 6778999999999999987665
No 76
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.1e-34 Score=353.52 Aligned_cols=394 Identities=16% Similarity=0.183 Sum_probs=277.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANRSEVAIRVARACNEM-GIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~el-Gi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
.||||+|.|.....+++++++. |+.++.+..... .. ...++ .+. -++.|.+.|+++|+++++|+|++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~--g~-~~~~~-~~~--------~~~~d~~~l~~~~~~~~id~vi~ 68 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNA--GT-ALLAE-NVV--------IDVTDIEALVAFAKEEGIDLTVV 68 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCH--HH-Hhhcc-ccC--------CCCCCHHHHHHHHHHhCCCEEEE
Confidence 3899999998888899999986 555555522211 11 12222 221 23578999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+.+... ...+++.+++.|++++||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+||||.
T Consensus 69 ~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKP~ 145 (420)
T PRK00885 69 GPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TFTDAEEALAYLDEKGAPIVVKAD 145 (420)
T ss_pred CCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeC
Confidence 865321 22567789999999999999999999999999999999999999986 688999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eecccc------
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCSM------ 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s~------ 287 (1427)
.|+||+||++|++.+|+.++++.+.+.. .|+ +..++|||||+ |+|+++.++.|+. ++..+. .++...
T Consensus 146 ~~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~-G~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~ 221 (420)
T PRK00885 146 GLAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLD-GEEASFFAFVDGE-NVLPLPTAQDHKRAGDGDT 221 (420)
T ss_pred CCCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccC-CcEEEEEEEECCC-ceEeceeeEeeeecccCCC
Confidence 9999999999999999999998876532 233 35899999999 7999999999864 444332 221110
Q ss_pred ccccceEEEEccCCCCCHHHHHHHHH-HHHH---HHHHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAITE-TSVR---LAKSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~---l~~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
..+...+...+|++.++++..+++.+ .+.+ .++++| |.|+.|+||+++++| +|+||+|||+++. +......+
T Consensus 222 ~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~ 300 (420)
T PRK00885 222 GPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRL 300 (420)
T ss_pred CCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhc
Confidence 11123345667887788877766654 4444 444545 569999999999877 9999999999865 54555567
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCcccccC-CCcCCCcee
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVDS-SCPYPGLQI 438 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d~-~~~~~G~~I 438 (1427)
+.|+++.+++++.|...+ +++.. .++.++...+ +.... -..|..|. |....... ++.+.. +....+..+
T Consensus 301 ~~d~~~~~~~~~~g~~~~-~~~~~----~~~~a~~~~~-~~~gy-~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 371 (420)
T PRK00885 301 KSDLVELLLAAADGKLDE-VELEW----DDRAAVGVVL-AAKGY-PGDYRKGDVITGLEAAD--ADKVFHAGTKLEDGKL 371 (420)
T ss_pred cCCHHHHHHHHHcCCCCC-CCceE----CCCcEEEEEE-eCCCC-CCCCCCCCEeecccccC--CCEEEECceeccCCeE
Confidence 889999999999997532 22211 1334443322 22111 11232332 22111111 111110 100011111
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. ..+.++.|++.|.|++||.++++++++.+++.|. ++.|.+
T Consensus 372 ~~-~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~~r~dig~ 415 (420)
T PRK00885 372 VT-NGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGY 415 (420)
T ss_pred EE-eCCEEEEEEEecCCHHHHHHHHHHHHhccCCCCCEeechhhh
Confidence 11 2355999999999999999999999999999985 777766
No 77
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=9.9e-35 Score=352.15 Aligned_cols=398 Identities=15% Similarity=0.179 Sum_probs=287.1
Q ss_pred EEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCc
Q psy15244 61 LIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGF 140 (1427)
Q Consensus 61 LIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gf 140 (1427)
||+|.|.-.-.++.++++..... -+|..+. .+....+++.+.++ + -++.|.+.|+++|+++++|+|++|+++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~-~~~~~pg--n~g~~~~~~~~~vp----~-~~~~d~~~l~~~a~~~~id~vvvg~E~ 72 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCD-AVFCAPG--NAGIATSGDATCVP----D-LDISDSAAVISFCRKWGVGLVVVGPEA 72 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCC-EEEECCC--CHHHhhhccceeec----C-CCCCCHHHHHHHHHHcCCCEEEECCch
Confidence 78999977778999998876322 2333333 23334455555553 1 245789999999999999999999754
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCC
Q psy15244 141 LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGG 220 (1427)
Q Consensus 141 lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgG 220 (1427)
..- +.+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+.+.+++.++++++|||+||||..++|
T Consensus 73 ~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~~ 149 (434)
T PLN02257 73 PLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLAA 149 (434)
T ss_pred HHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 221 3788899999999999999999999999999999999999999986 6889999999999999999999999999
Q ss_pred CcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeeee-cc------cccccc
Q psy15244 221 GRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER-DC------SMQRRY 291 (1427)
Q Consensus 221 GrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er-d~------s~qr~~ 291 (1427)
|+||+++++.+|+.++++.+... ..|+ +..++|||||+ |+|++++++.|+. +++.+.+- |. ....+.
T Consensus 150 GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~-G~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~nt 225 (434)
T PLN02257 150 GKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLD-GEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNT 225 (434)
T ss_pred CCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CCEEEEEEEECCC-cEEEEEeeeecccccCCCCCCCC
Confidence 99999999999999999887542 3354 46899999999 7799999999865 55555321 10 011113
Q ss_pred ceEEEEccCCCCCHHHHHHHHHH-HH---HHHHHcC--CCCeEEEEEEEc-CCCcEEEEeeCCCCC-CchhHHHHHhCCC
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITET-SV---RLAKSLG--YSNAGTVEFLLD-KDDNFYFIEVNPRLQ-VEHTLSEEITGID 363 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~-a~---~l~~alg--~~G~~~VEflvd-~dG~~yfIEINpRl~-ge~~vte~~tGiD 363 (1427)
..+.+.+|++.++++.++++.+. +. +.+++.| |.|++++||+++ ++|++||||+|+|+| .|+.++...++.|
T Consensus 226 ggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~D 305 (434)
T PLN02257 226 GGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESD 305 (434)
T ss_pred CCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCC
Confidence 45667888888999888876443 33 4444555 568899999998 678899999999999 4577777779999
Q ss_pred HHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCC-ceeeeeCCC--CCcccccC-CCcC-CCcee
Q psy15244 364 VVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG-RLDVFTDPA--SIGIRVDS-SCPY-PGLQI 438 (1427)
Q Consensus 364 Lv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G-~i~~~~~p~--~~gvr~d~-~~~~-~G~~I 438 (1427)
|++++++++.|+ |+.+++.+. .++++ |-+.+..... ..+..| .|..+.... .+++.+.. +... .+..+
T Consensus 306 l~~~~~~~~~g~-l~~~~~~~~----~~~av-~vv~a~~gYp-~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~ 378 (434)
T PLN02257 306 LAQVLLAACKGE-LSGVSLTWS----PDSAM-VVVMASNGYP-GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNV 378 (434)
T ss_pred HHHHHHHHHcCC-CCCCCceEC----CCceE-EEEEcCCCCC-CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEE
Confidence 999999999997 332222221 23343 3334333211 123333 233332211 12322221 1111 12222
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. .++.+..|++.|.|.++|+++++++++.+++.|. ++.|.+
T Consensus 379 ~t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg~ 422 (434)
T PLN02257 379 VA-AGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIGW 422 (434)
T ss_pred EE-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhH
Confidence 22 2456888999999999999999999999999984 677766
No 78
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.7e-34 Score=377.43 Aligned_cols=380 Identities=18% Similarity=0.227 Sum_probs=295.6
Q ss_pred CCEEEEEcC--CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhc-CCCE
Q psy15244 57 MEKILIANR--SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNN-NVDA 133 (1427)
Q Consensus 57 ~kkVLIagr--Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~-~vDa 133 (1427)
.++|++++. ..++..++++++++|++++++.+++.....+...+|..+.. ++.|.+.+++++++. .+++
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~--------d~~d~~~l~~~~~~~~~i~~ 73 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA--------DTSDPDRIHRFVSSLDGVAG 73 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc--------CCCCHHHHHHHHHhcCCCCE
Confidence 357888774 44567789999999999999987665433223235555443 357889999999987 6899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEE
Q psy15244 134 IHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVV 213 (1427)
|+++.++.. ...++.++..|++ |++++++..++||..+|++++++|||+|++. .+.+.+++.++++.++||+||
T Consensus 74 V~~~se~~v--~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVV 147 (887)
T PRK02186 74 IMSSSEYFI--EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTH--ALALRAVALDALDGLTYPVVV 147 (887)
T ss_pred EEeCchhhH--HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEE
Confidence 998865433 3456788888987 8999999999999999999999999999986 788999999999999999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccccc-EEEeeeeccccccccc
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLYERDCSMQRRYQ 292 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~erd~s~qr~~q 292 (1427)
||..|+||+||++|++.+|+.++++.+.+ .+++++++||||+ |+|++|+++.++.+. ++.+..+.......+.
T Consensus 148 KP~~g~gS~GV~~v~~~~el~~a~~~~~~-----~~~~~~lvEEfI~-G~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~v 221 (887)
T PRK02186 148 KPRMGSGSVGVRLCASVAEAAAHCAALRR-----AGTRAALVQAYVE-GDEYSVETLTVARGHQVLGITRKHLGPPPHFV 221 (887)
T ss_pred EeCCCCCCCCeEEECCHHHHHHHHHHHHh-----cCCCcEEEeeccc-CCcEEEEEEEECCcEEEEEEEeeecCCCCCeE
Confidence 99999999999999999999999887643 2367899999999 799999999875432 3334443333223344
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCcEEEEeeCCCCCCch--hHHHHHhCCCHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQVEH--TLSEEITGIDVVQSQI 369 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~dG~~yfIEINpRl~ge~--~vte~~tGiDLv~~~i 369 (1427)
...+..|+ .++++..+++.+.+.++++++|+. |++|+||+++++| +||||||||++|++ .+++.++|+|++++++
T Consensus 222 e~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 222 EIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred EeccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 45556788 488899999999999999999997 9999999999765 99999999999883 5788999999999999
Q ss_pred HHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC-----CCCCcccccCCCcCCCceecccCc-
Q psy15244 370 KIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD-----PASIGIRVDSSCPYPGLQISPDYD- 443 (1427)
Q Consensus 370 ~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~-----p~~~gvr~d~~~~~~G~~I~~~~D- 443 (1427)
+.++|.++.. ........++...+ .+..|++..+.. +..+++++. ....+|+.|.+..|
T Consensus 300 ~~~lG~~~~~-----~~~~~~~~ai~~~~---------~~~~G~i~~i~~~~~~~~~~~~~~~~-~~~~~G~~v~~~~~~ 364 (887)
T PRK02186 300 DLHLGVAAFA-----DPTAKRYGAIRFVL---------PARSGVLRGLLFLPDDIAARPELRFH-PLKQPGDALRLEGDF 364 (887)
T ss_pred HHhCCCCCCC-----CCCCCCeEEEEEEe---------cCCCceEEecccchhhcccCCeEEEE-EecCCCCEecCCCCC
Confidence 9999997642 11122233333222 244677765532 223344433 34678999876544
Q ss_pred -cceEEEEEEcCCHHHHHHHHHHHhhccEEc
Q psy15244 444 -SLLAKIIVHTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 444 -s~l~kvi~~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
+.+|+|+++|+|++++.+++.++++.++|+
T Consensus 365 ~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 365 RDRIAAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred CCccEEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 569999999999999999999999999884
No 79
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.9e-34 Score=381.54 Aligned_cols=365 Identities=22% Similarity=0.382 Sum_probs=290.1
Q ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
..+||||+|.|++ ++.++++++++|+++++++++++..+.+...+|..|..+ .+.+.|++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep---------~~~e~vl~ 624 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEP---------LTLEDVLN 624 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEcc---------CCHHHHHH
Confidence 4789999999875 345799999999999999999998888888999988754 45899999
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
+++++++|+|+|++|... ...++..+++.|++++|++++++..+.||..++++|+++|||+|++. .+.+.+++.+++
T Consensus 625 I~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~ 701 (1068)
T PRK12815 625 VAEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFA 701 (1068)
T ss_pred HHhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHH
Confidence 999999999999876432 23578889999999999999999999999999999999999999987 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE-eeee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH-LYER 283 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~-l~er 283 (1427)
+++|||+||||++++||+||++|++.+||..+++.+. ..++++++|+||+ |.|++|++++|+...++. +.++
T Consensus 702 ~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~-G~E~~Vd~i~dg~~v~i~~i~e~ 774 (1068)
T PRK12815 702 KRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFID-GKEYEVDAISDGEDVTIPGIIEH 774 (1068)
T ss_pred HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeec-CceEEEEEEEcCCceEEeeEEEE
Confidence 9999999999999999999999999999999988761 2357899999998 789999999997543321 2222
Q ss_pred ccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCC
Q psy15244 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGID 363 (1427)
Q Consensus 284 d~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiD 363 (1427)
......+........|+..++++..+++.+.+.+++++||+.|.+++||++++ |++|+||+|||+++..++++.++|+|
T Consensus 775 ~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR~s~t~~~~skatGv~ 853 (1068)
T PRK12815 775 IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPRASRTVPFVSKATGVP 853 (1068)
T ss_pred eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCCCCccHHHHHHHHCCC
Confidence 11111122234445676679999999999999999999999999999999986 56999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCc
Q psy15244 364 VVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYD 443 (1427)
Q Consensus 364 Lv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~D 443 (1427)
++++.+++++|.++.++++.. .+.|..+.+.. ..|-.+.-++.. ....+.|...
T Consensus 854 l~~~~~~~~lG~~l~~~~~~~---------------------~~~~~~~~~~v-k~p~f~f~~~~~----~~~~lg~~m~ 907 (1068)
T PRK12815 854 LAKLATKVLLGKSLAELGYPN---------------------GLWPGSPFIHV-KMPVFSYLKYPG----VDNTLGPEMK 907 (1068)
T ss_pred HHHHHHHHHcCCChhhccccc---------------------ccCCCCCeEEE-EeccCChhHccc----CCCccCCcce
Confidence 999999999999987553221 12233232221 222222112210 1112333334
Q ss_pred cceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 444 SLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 444 s~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
| .|-++..|+|+++|+.|+.++.
T Consensus 908 s-tGe~~~~~~~~~~a~~k~~~~~ 930 (1068)
T PRK12815 908 S-TGEVMGIDKDLEEALYKGYEAS 930 (1068)
T ss_pred E-cceeEeccCCHHHHHHHHHHhc
Confidence 4 7889999999999999987765
No 80
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=3.6e-34 Score=349.41 Aligned_cols=395 Identities=16% Similarity=0.219 Sum_probs=277.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|..+..++++++++|+.+.++..+.+ ... ...+..+.+ .-++.|.+.|+++|+++++|+|+|+
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~------~~~~~d~~~l~~~~~~~~id~vi~~ 71 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGT--ARLAKNKNV------AISITDIEALVEFAKKKKIDLAVIG 71 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHH--hhhcccccc------cCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 3899999999999999999999976444433322 111 222222221 1245789999999999999999998
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeec
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAA 216 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~ 216 (1427)
.+... ...+++.++++|++++||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++||| +|+||.
T Consensus 72 ~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~~~g~P~~VvKp~ 148 (423)
T TIGR00877 72 PEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VFTDPEEALSYIQEKGAPAIVVKAD 148 (423)
T ss_pred CchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCeEEEEEC
Confidence 75211 13567889999999999999999999999999999999999999986 788999999999999999 999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eeccc------c
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCS------M 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s------~ 287 (1427)
.|+||+|++++++.+|+.++++.+.+.. || +..+++|+||+ |.|+++.++.|+. .+..+. .++.. .
T Consensus 149 ~~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~-G~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~ 223 (423)
T TIGR00877 149 GLAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLD-GEEVSLLAFVDGK-TVIPMPPAQDHKRALEGDK 223 (423)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECcc-CceEEEEEEEcCC-eEEeceeeeeeeecccCCC
Confidence 9999999999999999999998876543 33 35799999999 6899999999864 443332 11110 0
Q ss_pred ccccceEEEEccCCCCCHHHHHHH----HHHHHHHHHHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAI----TETSVRLAKSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l----~~~a~~l~~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
......+...+|++.++++..+++ .+.+.+.+.++| |.|++|+||+++++| +|++|||||+++. +......+
T Consensus 224 ~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~ 302 (423)
T TIGR00877 224 GPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLL 302 (423)
T ss_pred CCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccceeEeccc
Confidence 011123345677766777665443 333445555555 679999999999888 9999999999875 32233347
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC---CCCCcccccCCCcCCCce
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD---PASIGIRVDSSCPYPGLQ 437 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~---p~~~gvr~d~~~~~~G~~ 437 (1427)
++|+++.+++++.|. ++++++.. ..+.++..++.+.. +....+....+.. ....++++.... .+..
T Consensus 303 ~~dl~~~~~~~~~g~-l~~~~~~~----~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 371 (423)
T TIGR00877 303 KSDLLEVCLAAVEGK-LDEVELRF----DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAG--TKQD 371 (423)
T ss_pred CCCHHHHHHHHHcCC-CCCCCceE----CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECc--eecc
Confidence 799999999999996 22222221 23444444443222 2112222222211 111233322111 1111
Q ss_pred ecc--cCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 438 ISP--DYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 438 I~~--~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
... ...+.++.|++.|.|+++|.++++++++.+++.|. ++.|..
T Consensus 372 ~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig~ 419 (423)
T TIGR00877 372 NGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIGF 419 (423)
T ss_pred CCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEecccch
Confidence 111 22456999999999999999999999999999984 666654
No 81
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.6e-34 Score=382.14 Aligned_cols=367 Identities=20% Similarity=0.340 Sum_probs=290.0
Q ss_pred CCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
...+||||+|+|++ ++.++++++++|+++++++.+++..+.....+|+.|..+ .+.+.++
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~---------~~~e~v~ 622 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEP---------LTLEDVL 622 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecC---------CCHHHHH
Confidence 35789999999974 356899999999999999999988788888899987643 4589999
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEF 203 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~ 203 (1427)
++++++++|+|+|.+|.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++. .+.+.+++.++
T Consensus 623 ~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~ 699 (1066)
T PRK05294 623 EIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEV 699 (1066)
T ss_pred HHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHH
Confidence 99999999999997764322 2678899999999999999999999999999999999999999987 68899999999
Q ss_pred HHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE-eee
Q psy15244 204 CDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH-LYE 282 (1427)
Q Consensus 204 a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~-l~e 282 (1427)
++++|||+||||+.|+||+||.+|++.+||..+++.+... ..+++++||+||+|.+|++|++++|+.+.++. +.+
T Consensus 700 ~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e 775 (1066)
T PRK05294 700 AEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIME 775 (1066)
T ss_pred HHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEE
Confidence 9999999999999999999999999999999999876542 23578999999996669999999986532221 222
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
+.....-+........|+..++++..+++.+.+.+++++||+.|++++||++++ |++|+||+|||+++..++++.++|+
T Consensus 776 ~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~-~~~yViEiNpR~s~t~~~~s~atGi 854 (1066)
T PRK05294 776 HIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD-DEVYVIEVNPRASRTVPFVSKATGV 854 (1066)
T ss_pred eeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC-CeEEEEEEecCCCccHHHHHHHhCc
Confidence 111111111233445576679999999999999999999999999999999985 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccC
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDY 442 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~ 442 (1427)
|+++..+++++|.+|+++++... ..+..+++.+.+++ | -++.. ....+.|..
T Consensus 855 ~~~~~~~~~~lG~~l~~~~~~~~-~~~~~~~vk~p~fs------~-----------------~~~~~----~~~~lg~~m 906 (1066)
T PRK05294 855 PLAKIAARVMLGKKLAELGYTKG-LIPPYVAVKEAVFP------F-----------------NKFPG----VDPLLGPEM 906 (1066)
T ss_pred cHHHHHHHHHcCCChhhcCCCcc-CCCCceEEEeccCC------h-----------------hhccC----CCCccCcee
Confidence 99999999999999876543221 11133444433331 1 11110 011122233
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 443 DSLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 443 Ds~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.| .|-+++.|+|+++|+.|+.++.
T Consensus 907 ~s-tge~~~~~~~~~~a~~k~~~~~ 930 (1066)
T PRK05294 907 KS-TGEVMGIDRTFGEAFAKAQLAA 930 (1066)
T ss_pred ee-cCceeecCCCHHHHHHHHHHhc
Confidence 33 6778999999999999877655
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-33 Score=325.80 Aligned_cols=372 Identities=22% Similarity=0.360 Sum_probs=305.3
Q ss_pred EEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
+|..++ ..-.+..+++++++.|+++++|.+++.+......+||+.|+.| ...+.+..++++..+|+|+|+
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP---------~~~E~v~~Ii~~E~~Dailp~ 77 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP---------ITKEPVEKIIEKERPDAILPT 77 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec---------CcHHHHHHHHHhcCcceeecc
Confidence 455544 4445677999999999999999999998888889999999987 568899999999999999999
Q ss_pred CCcc-cccH--HHHH--HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEE
Q psy15244 138 YGFL-SERE--DFAK--AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVI 212 (1427)
Q Consensus 138 ~gfl-sE~~--~~a~--~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvV 212 (1427)
.|-. ..|. .+.+ .|++.|++++|.++++++.+.||.++++++++.|+|+| .. ...+.+++.++++.+|||||
T Consensus 78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~--~~~~~~e~~~~~~~ig~PvI 154 (400)
T COG0458 78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SR--IAHSVEEADEIADEIGYPVI 154 (400)
T ss_pred cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-cc--ccccHHHHhhhHhhcCCCEE
Confidence 7732 2232 2222 45677999999999999999999999999999999999 32 68899999999999999999
Q ss_pred EeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec-c-ccccc
Q psy15244 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD-C-SMQRR 290 (1427)
Q Consensus 213 VKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd-~-s~qr~ 290 (1427)
|||+.+.||.|..+++|.+||.+..+.....+ +..++++||+|.|++|++..++.|.+++++.+.... + ...-+
T Consensus 155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvh 230 (400)
T COG0458 155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVH 230 (400)
T ss_pred EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccccccc
Confidence 99999999999999999999999888765432 356999999999999999999999999998773222 1 22334
Q ss_pred cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC-CcEEEEeeCCCCCCchhHHHHHhCCCHHHHHH
Q psy15244 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQVEHTLSEEITGIDVVQSQI 369 (1427)
Q Consensus 291 ~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d-G~~yfIEINpRl~ge~~vte~~tGiDLv~~~i 369 (1427)
....+..+|++.+++...+.++..+.++++++|..|..+++|.++++ |++||||||||++++..+.+.+||..+.+...
T Consensus 231 tgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaa 310 (400)
T COG0458 231 TGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAA 310 (400)
T ss_pred ccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHH
Confidence 57788899999999999999999999999999999999999999985 69999999999999999999999999999999
Q ss_pred HHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcC-CCceecccCccceEE
Q psy15244 370 KIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPY-PGLQISPDYDSLLAK 448 (1427)
Q Consensus 370 ~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~-~G~~I~~~~Ds~l~k 448 (1427)
.+|.|..++++ +.++...+++ .|.|....+... .| |++...+. ....+...+.| .|-
T Consensus 311 kla~g~~l~Ei---~n~it~~t~a------------~fePsldyvv~k-~p-----r~~f~kf~~~~~~l~~~mks-~ge 368 (400)
T COG0458 311 KLAVGYTLDEI---RNDITGRTPA------------SFEPSLDYVVTK-IP-----RFDFEKFPGADRRLGTQMKS-VGE 368 (400)
T ss_pred HhhcccCchhh---cCcccccccc------------ccCCccceeeee-cC-----CCCcccccccccceeeeeec-cce
Confidence 99999998765 3334334443 477777654321 11 22211111 22345555566 899
Q ss_pred EEEEcCCHHHHHHHHHHHhh
Q psy15244 449 IIVHTATYKSSCEKMRRALE 468 (1427)
Q Consensus 449 vi~~G~~~~eA~~r~~raL~ 468 (1427)
|++.|+|++||++|+.|.|+
T Consensus 369 vm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 369 VMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred EEEecchHHHHHHHHHHhhc
Confidence 99999999999999999985
No 83
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.2e-33 Score=339.75 Aligned_cols=397 Identities=14% Similarity=0.133 Sum_probs=277.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|.|.-...+++++++.|++++++..+.. ......++..+.+ +..|.+.|+++|+++++|+|+
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~N--pg~~~~a~~~~~~--------~~~d~e~l~~~~~~~~id~Vi 70 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHEN--PSIKKLSKKYLFY--------DEKDYDLIEDFALKNNVDIVF 70 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC--hhhhhcccceeec--------CCCCHHHHHHHHHHhCCCEEE
Confidence 567999999998888899999999987776644212 2223345543222 236889999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|+.+... ...++..+++.|++++||+++++++++||..||++|.++|||+|+.+ ..+.+.+++..++.+++||+||||
T Consensus 71 ~~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP 148 (435)
T PRK06395 71 VGPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKP 148 (435)
T ss_pred ECCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEe
Confidence 9976411 12456777889999999999999999999999999999999998543 145567888888888899999999
Q ss_pred cCCCCCcCeEEecCH-HHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe-eeec----cc--c
Q psy15244 216 AFGGGGRGMRMVANK-DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERD----CS--M 287 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~-eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd----~s--~ 287 (1427)
.+++||+||++|.+. +++.+++..+.+.. . .++.++|||||+ |.|++++++.|+.. +..+ ..+| +. .
T Consensus 149 ~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~-G~E~Svd~~~dg~~-~~~l~~~~d~~r~~~~d~ 223 (435)
T PRK06395 149 IGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMT-GEEFSLQAFSDGKH-LSFMPIVQDYKRAYEGDH 223 (435)
T ss_pred CCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecC-CceEEEEEEEcCCe-EEEecccceeeecccCCC
Confidence 999999999999643 34455554443311 1 146799999999 78999999998753 3333 2211 11 1
Q ss_pred ccccceEEEEc----cCCCCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEEEEcCCCcEEEEeeCCCCCC-chhHHH
Q psy15244 288 QRRYQKVIQIA----PAQDMSVSVRDAITETSVRLAKSLG-----YSNAGTVEFLLDKDDNFYFIEVNPRLQV-EHTLSE 357 (1427)
Q Consensus 288 qr~~qk~ie~a----Pa~~l~~e~~~~l~~~a~~l~~alg-----~~G~~~VEflvd~dG~~yfIEINpRl~g-e~~vte 357 (1427)
..+...+...+ |.|.++++..+++.+.+.+++++|+ |+|+.++||+++++| +|+||+|+|++. |+.+..
T Consensus 224 gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il 302 (435)
T PRK06395 224 GPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVL 302 (435)
T ss_pred CCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhh
Confidence 22233344454 4556899999999999999999999 678888999999777 999999999994 455554
Q ss_pred HHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccc-cCCCcC-CC
Q psy15244 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRV-DSSCPY-PG 435 (1427)
Q Consensus 358 ~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~-d~~~~~-~G 435 (1427)
...+.|+++..+.++.| +|.. .+.+. .. .++.+-+.++. .. ..|..|.|.........++.+ ..+... .+
T Consensus 303 ~~l~~d~~~~~~~~~~g-~l~~-~~~~~---~~-~~~~~~l~~~g-Yp-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 374 (435)
T PRK06395 303 YLLKSDFVETLHQIYSG-NLNG-SIKFE---RK-ATVLKYIVPPG-YG-ENPSPGRIKIDKTIFDSNSDVYYASVSGTLN 374 (435)
T ss_pred hhcccCHHHHHHHHhcC-CCCC-Cceec---CC-CEEEEEEecCC-CC-CCCCCCceeccccccCCCCEEEEeeccccCC
Confidence 55789999999999999 4432 22221 12 23333333332 11 234556554221101123222 111111 11
Q ss_pred ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 436 LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 436 ~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
. +.. ..+.++.|++.|.|+++|+++++++++.++ .|. ++.|.+
T Consensus 375 ~-~~s-~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~ 419 (435)
T PRK06395 375 D-VKT-SGSRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGD 419 (435)
T ss_pred C-eEE-CCCcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhh
Confidence 1 222 245599999999999999999999999998 553 566654
No 84
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.7e-32 Score=335.55 Aligned_cols=393 Identities=18% Similarity=0.144 Sum_probs=273.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHc--CCEEEEEecCCCccCcccc----ccceEEEcCCCCCcccCCCCHHHHHHHHHhcCC
Q psy15244 58 EKILIANRSEVAIRVARACNEM--GIKSVGIYSEQDKFSAHRT----KVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV 131 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~el--Gi~~vav~s~~d~~s~~~~----~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~v 131 (1427)
.||||+|.|.-...++.++++. |++++++..+.+ ..... .+|+.+.+ +..|.+.|+++|+++++
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~N--pg~~~~~~~~~~~~~~~--------~~~d~~~l~~~a~~~~i 70 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLN--PGINSVVKATGGEYFIG--------NINSPEEVKKVAKEVNP 70 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCC--hhheeecccccCceEec--------CCCCHHHHHHHHHHhCC
Confidence 3899999998888899999998 999888855332 11111 22433443 24678999999999999
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCC-CccccCCCHHHHHHHHHhcCCc
Q psy15244 132 DAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIP-GTTEPVTDVDKVKEFCDEVEFP 210 (1427)
Q Consensus 132 DaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~-~~~~~v~s~eea~~~a~~iGyP 210 (1427)
|+|+||.+.. -...+++.+++.|++++||+++++++++||..+|++|+++|||+|+ +. .+++.+++.++++.. +|
T Consensus 71 d~Vi~g~E~~-l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~--~~~~~~ea~~~~~~~-~P 146 (486)
T PRK05784 71 DLVVIGPEEP-LFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYK--VFYDVEEAAKFIEYG-GS 146 (486)
T ss_pred CEEEECCchH-HHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccce--EeCCHHHHHHHHhhc-CC
Confidence 9999986421 1125778899999999999999999999999999999999999974 54 678999999988665 69
Q ss_pred EEEeecCCCCCcCeEEecCHHH-----HHHHHHHHHHHHH---HccC--CCcEEEEeeccCCceEEEEEEecccccEEEe
Q psy15244 211 VILKAAFGGGGRGMRMVANKDA-----IEENFKRAQSEAL---ASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHL 280 (1427)
Q Consensus 211 vVVKP~~GgGGrGV~iV~s~ee-----L~~a~~~a~~ea~---~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l 280 (1427)
+||||..++||+||++|++.++ +.+++..+.++.. ..|+ +..++|||||+ |.|++|+++.|++ +++.+
T Consensus 147 vVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~-G~E~SV~al~dG~-~~~~l 224 (486)
T PRK05784 147 VAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD-GVEYTLQVLTDGE-TVIPL 224 (486)
T ss_pred EEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC-CeEEEEEEEECCC-eEEEe
Confidence 9999999999999999999873 4566644433321 3454 46899999999 8899999999864 33322
Q ss_pred -eeecccc------ccccceEEEEcc----CCCCCHHHHHHHHHHHHHHHHHcC------CCCeEEEEEEEc-CCCcEEE
Q psy15244 281 -YERDCSM------QRRYQKVIQIAP----AQDMSVSVRDAITETSVRLAKSLG------YSNAGTVEFLLD-KDDNFYF 342 (1427)
Q Consensus 281 -~erd~s~------qr~~qk~ie~aP----a~~l~~e~~~~l~~~a~~l~~alg------~~G~~~VEflvd-~dG~~yf 342 (1427)
..+|... ..+...+...+| .|.++++..+++.+.+...+++++ |+|+.|+||+++ ++| ||+
T Consensus 225 ~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~v 303 (486)
T PRK05784 225 PLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTV 303 (486)
T ss_pred eeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEE
Confidence 2222111 112234555677 666788877777777776665553 459999999999 777 999
Q ss_pred EeeCCCCCCc-hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCcc-CCCCCceeeeeC-
Q psy15244 343 IEVNPRLQVE-HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNF-QPSTGRLDVFTD- 419 (1427)
Q Consensus 343 IEINpRl~ge-~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f-~P~~G~i~~~~~- 419 (1427)
||+|+|+++. .+.+...++.|+++..++++.|+ |.++.+.+. ...++ |.+.+......- .|..|.......
T Consensus 304 IE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~----~~~~~-~vv~as~gYp~~~~~~~g~~i~~~~~ 377 (486)
T PRK05784 304 IEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFN----EEPSV-VKAIAPLGYPLSRDLASGRRIVVDLD 377 (486)
T ss_pred EEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeec----CCceE-EEEECCCCCCCcccCCCCCEEECCcc
Confidence 9999999964 33333346669999999999997 332222221 13333 455554432211 145564332211
Q ss_pred ---CCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhcc-EEccc
Q psy15244 420 ---PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET-QVSGV 475 (1427)
Q Consensus 420 ---p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~-~I~Gv 475 (1427)
..+..|... +....+..+.. ..+.+..|++.|+|.++|+++++++++.+ .+.|.
T Consensus 378 ~~~~~~~~v~~a-g~~~~~~~~~t-~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 378 KIKEEGCLVFFG-SVELEGGQLIT-KGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred ccccCCCEEEEC-CceeeCCEEEE-cCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 111122222 21112222222 24457789999999999999999999998 77663
No 85
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.4e-32 Score=329.63 Aligned_cols=343 Identities=15% Similarity=0.179 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccC
Q psy15244 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194 (1427)
Q Consensus 115 ~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v 194 (1427)
++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EE
Confidence 4678999999999999999999886421 23678899999999999999999999999999999999999999986 68
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 195 TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 195 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
.+.+++.++++++|||+||||..++||+||++|++.+|+.++++.+... ..++.++||+||+ |+|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~----~~~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD----EEEGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc----CCCCeEEEEEccc-CceEEEEEEeeCC
Confidence 8999999999999999999999999999999999999999999876421 1145899999999 6999999999865
Q ss_pred ccEEEe--eeecc------ccccccceEEEEccCCCCCHHHHHHH-HHHHHHHHHHc---CC--CCeEEEEEEEcCCCcE
Q psy15244 275 GDVVHL--YERDC------SMQRRYQKVIQIAPAQDMSVSVRDAI-TETSVRLAKSL---GY--SNAGTVEFLLDKDDNF 340 (1427)
Q Consensus 275 G~vv~l--~erd~------s~qr~~qk~ie~aPa~~l~~e~~~~l-~~~a~~l~~al---g~--~G~~~VEflvd~dG~~ 340 (1427)
. .+.+ ..++. ....+...+...+|++.++++..+++ .+.+.+++++| |+ .|+.++||+++++| +
T Consensus 164 ~-~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~ 241 (379)
T PRK13790 164 L-AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-P 241 (379)
T ss_pred E-EEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-e
Confidence 3 2221 11110 00111134556678877888776555 55666666655 54 69999999999877 9
Q ss_pred EEEeeCCCCCCc-hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCC-ceeeee
Q psy15244 341 YFIEVNPRLQVE-HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG-RLDVFT 418 (1427)
Q Consensus 341 yfIEINpRl~ge-~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G-~i~~~~ 418 (1427)
|+||+|+|+++- ..++...+|+|+++.+++++.|.+++ +.+.+....|..+..+-|..+ +..| .|....
T Consensus 242 ~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~---~~~~~~~~~~v~~~s~gyp~~------~~~~~~i~~~~ 312 (379)
T PRK13790 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTE---FKWKNESIVGVMLASKGYPDA------YEKGHKVSGFD 312 (379)
T ss_pred EEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCc---eeEcCCCEEEEEEccCCCCCC------CCCCCeeeecC
Confidence 999999999853 44555568999999999999998653 333332333333322223222 2222 233221
Q ss_pred CCCCCcccccCCCc-CCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 419 DPASIGIRVDSSCP-YPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 419 ~p~~~gvr~d~~~~-~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
... .+... +.. ..|..++. .+.+..|++.|.|.++|.++++++++.+.+.|. ++.|.+
T Consensus 313 -~~~-~~~~~-~~~~~~~~~~~~--ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~ 373 (379)
T PRK13790 313 -LNE-NYFVS-GLKKQGDTFVTS--GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIAN 373 (379)
T ss_pred -CCC-eEEEC-CccccCCeEEEC--CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhh
Confidence 111 11111 111 12222221 356888999999999999999999999999984 777766
No 86
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=8.5e-32 Score=317.39 Aligned_cols=293 Identities=18% Similarity=0.243 Sum_probs=237.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcC--CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMG--IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elG--i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
|.||||+|.|... .+++++++.| +++++++.++. ++....+|+.+.++...+ . ..++.++++++++++|+|
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~--~~~~~~~d~~~~~p~~~~--~--~~~~~l~~~~~~~~id~i 73 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISEL--APALYFADKFYVVPKVTD--P--NYIDRLLDICKKEKIDLL 73 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCc--chhhHhccCcEecCCCCC--h--hHHHHHHHHHHHhCCCEE
Confidence 5799999987555 8999999995 99999877754 566778998888762211 1 237899999999999999
Q ss_pred EeCCCcccc-cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHH--HHHhcCCcE
Q psy15244 135 HPGYGFLSE-REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKE--FCDEVEFPV 211 (1427)
Q Consensus 135 ~pg~gflsE-~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~--~a~~iGyPv 211 (1427)
+|+.+...+ .+..++.++..|+.+++|++++++.+.||..++++++++|+|+|++. .+.+.+++.+ +.+.++||+
T Consensus 74 i~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~ 151 (326)
T PRK12767 74 IPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPL 151 (326)
T ss_pred EECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCE
Confidence 998763221 12345667778999999999999999999999999999999999986 6788888887 567899999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~ 291 (1427)
|+||..|+||+|++++++.+|+.++++.. .++++|+||+ |+++++.++.+.+|+++.+..+.....+..
T Consensus 152 viKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~-G~e~~v~~~~~~~G~~~~~~~~~~~~~~~g 220 (326)
T PRK12767 152 FVKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIE-GQEYTVDVLCDLNGEVISIVPRKRIEVRAG 220 (326)
T ss_pred EEEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccC-CceEEEEEEEcCCCCEEEEEEeeeeeecCC
Confidence 99999999999999999999999887642 4899999997 899999999987788887655443211111
Q ss_pred ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
....... .. .+++.+.+.++++++|+.|.+++||++++ |++|+||+|||+++..++. ..+|+|+.++.++.
T Consensus 221 ~~~~~~~----~~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~ 291 (326)
T PRK12767 221 ETSKGVT----VK---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRN 291 (326)
T ss_pred ceeEEEE----cC---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHH
Confidence 1111111 11 26788999999999999999999999997 6799999999999987654 46999999999999
Q ss_pred HcCCCCc
Q psy15244 372 AQGKSLT 378 (1427)
Q Consensus 372 A~G~~l~ 378 (1427)
++|++++
T Consensus 292 ~~g~~~~ 298 (326)
T PRK12767 292 LLGGENE 298 (326)
T ss_pred HcCCCCC
Confidence 9999864
No 87
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.4e-30 Score=292.51 Aligned_cols=365 Identities=19% Similarity=0.286 Sum_probs=288.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+++|-|+|+|..++++..++++||+++++++.++| ++..+.||..+.. .|.|.+++.+++.+ +|.|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~--~PA~~va~~~i~~--------~~dD~~al~ela~~--~DVi-- 66 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD--APAAQVADRVIVA--------AYDDPEALRELAAK--CDVI-- 66 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC--Cchhhcccceeec--------CCCCHHHHHHHHhh--CCEE--
Confidence 46899999999999999999999999999977777 7788889888763 47889999999998 7777
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+|+|..-+.+..+.+++. .+ +-|++++++...||...|++++++|+|+|||. .+.+.+++.++++++|+|+|+|.+
T Consensus 67 T~EfE~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKtr 142 (375)
T COG0026 67 TYEFENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKTR 142 (375)
T ss_pred EEeeccCCHHHHHHHHhh-cC-cCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEec
Confidence 577744445666666666 34 45999999999999999999999999999997 899999999999999999999999
Q ss_pred CCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 217 FGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 217 ~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
.|| .|||.+++++.+++......... ....++|+||+..+|+||-+.++.+|++.. |.--.++++......
T Consensus 143 ~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~-yP~~eN~h~~gIl~~ 214 (375)
T COG0026 143 RGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAF-YPVAENVHRNGILRT 214 (375)
T ss_pred cccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEE-ecccceeeecCEEEE
Confidence 777 89999999999998875543211 234499999999999999999988888764 444457888888888
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.++|+ .++++..++..++|.+++++|+|.|++.|||++++||++++.|+.||+..+.++|...+.++.++.++|..+|.
T Consensus 215 siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~gl 293 (375)
T COG0026 215 SIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGL 293 (375)
T ss_pred EEecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCC
Confidence 99999 79999999999999999999999999999999999999999999999999988998999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCC-CcCCCceecccCccceEEEEEEcC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSS-CPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~-~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
||++. .....++..-+.-.+.. +. ..-.....| +..+.+.+. .+++|-+ +|+|.+.+.
T Consensus 294 PLg~~-------~~~~p~vMvNlLG~~~~----~~-~~~~~l~~p-~~~lH~YGK~e~R~gRK--------mGHvn~~~~ 352 (375)
T COG0026 294 PLGST-------TLLSPSVMVNLLGDDVP----PD-DVKAVLALP-GAHLHWYGKAEARPGRK--------MGHVNVLGS 352 (375)
T ss_pred CCCCc-------cccCceEEEEecCCCCc----hh-hhHHHHhCC-CCEEEEecCccCCCCCe--------eeeEEeecC
Confidence 98742 22333444444432211 00 000111111 113333311 1233333 899999999
Q ss_pred CHHHHHHHHHHHhhc
Q psy15244 455 TYKSSCEKMRRALEE 469 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e 469 (1427)
|.+++.++....-..
T Consensus 353 ~~~~~~~~~~~l~~~ 367 (375)
T COG0026 353 DSDELEQLAALLPAK 367 (375)
T ss_pred CHHHHHHHHHhhhhh
Confidence 977776655544433
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.98 E-value=1.4e-29 Score=292.04 Aligned_cols=400 Identities=19% Similarity=0.230 Sum_probs=286.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|.---.|++++.+.+....+...+.+. .. +.+.+++. .+.+ .+.+.|+++|++.++|.++.|
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~-G~----a~~~~~~~---~~~~--~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNP-GT----ALEAYLVN---IEID--TDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCC-cc----chhhhhcc---Cccc--cCHHHHHHHHHHcCCCEEEEC
Confidence 38999999966666899998877544433333221 11 11334432 1111 568999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
.+.--. ..+++.+++.||+.+||+.+++++-++|..+|++|+++|||++.+. .+++.+++++++++.|.|+||||..
T Consensus 71 PE~pL~-~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~--~f~~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 71 PEAPLV-AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYE--VFTDPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred CcHHHh-hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCccccc--ccCCHHHHHHHHHHcCCCEEEeccc
Confidence 752111 2678999999999999999999999999999999999999999886 7889999999999999999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC--CcEEEEeeccCCceEEEEEEecccccEEEe-eeecc------ccc
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGK--DDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERDC------SMQ 288 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~--~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd~------s~q 288 (1427)
-.+|+||.++.+.+|..++++.+... ..||+ ..++||||++ |.|+|++++.|++ +++.+ ..+|. ...
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~-GeE~S~~a~~DG~-~v~p~p~aQDhKra~dgD~G 223 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLD-GEEFSLQAFVDGK-TVIPMPTAQDHKRAYDGDTG 223 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEeccc-ceEEEEEEEEcCC-eEEECccccccccccCCCCC
Confidence 99999999999999999998887764 34553 4599999999 9999999999975 45443 22221 122
Q ss_pred cccceEEEEccCCCCCHHHHHHHH-HHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCC-CchhHHHHHhC
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAIT-ETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQ-VEHTLSEEITG 361 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~-~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~-ge~~vte~~tG 361 (1427)
.+...+..++|+|.++++..+++. +.....++++ .|+|+....|+++++| |++||.|.|++ .|...+-...-
T Consensus 224 PNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~ 302 (428)
T COG0151 224 PNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLE 302 (428)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhcc
Confidence 344668889999999999777666 4444444443 4779999999999999 99999999999 66767667788
Q ss_pred CCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCc--ccccCCCcCCCcee
Q psy15244 362 IDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIG--IRVDSSCPYPGLQI 438 (1427)
Q Consensus 362 iDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~g--vr~d~~~~~~G~~I 438 (1427)
-||++..+.++.|. |.+..+.+.+ .+.++..-+-++. .. -.|..|. |+........+ +.+.+.....|..+
T Consensus 303 sdl~~~~~a~~~g~-L~~~~~~~~~---~~a~v~vvlA~~G-YP-~~~~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~l 376 (428)
T COG0151 303 SDLVELLLAAVDGK-LDEVEILFWD---KGAAVGVVLAAEG-YP-GDPEKGDVITGDEEAEEEGAKVFHAGVKLDDGGQL 376 (428)
T ss_pred ccHHHHHHHHHhCC-ccccchhhcc---CCceEEEEEecCC-CC-CCCCCCCEEecChhhcccCcEEEEeeEeccCCceE
Confidence 89999999999996 2222212111 1233322222222 10 1255664 33322111112 22221111222222
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPFL 482 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~l 482 (1427)
-. ..+..-.|+..|+|.++|.++++++++.+..+|. +.+|.+-
T Consensus 377 vt-~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~~yRkDIG~~ 421 (428)
T COG0151 377 VT-SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKDIGSR 421 (428)
T ss_pred Ee-cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCceeecccchh
Confidence 22 2455666999999999999999999999999885 6666553
No 89
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=277.99 Aligned_cols=378 Identities=16% Similarity=0.268 Sum_probs=294.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
-+|||.+|.||.+..+.-+|+++|.++++++...+ ++..+.|+.+|.++ .+|.++|..+.++.++|+|+|
T Consensus 12 a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~--APAmqVAhrs~Vi~--------MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVID--------MLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CeEEEEecCCccchHHHHHHHhcCCEEEEecCcCC--Chhhhhhhheeeee--------ccCHHHHHHHHHhhCCCeeee
Confidence 56899999999999999999999999999998888 56667788888875 589999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHH-hCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAAL-KADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~-~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
-.+..+ .+....+|+.|+.++ |+..+.+++.|+...|+++. ++|+|+.+|. ...+.+++.+.++++||||++||
T Consensus 82 EiEAI~--td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKP 156 (394)
T COG0027 82 EIEAIA--TDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKP 156 (394)
T ss_pred hhhhhh--HHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeeccc
Confidence 765332 344557889999865 99999999999999999874 6999999987 68999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc----cccc
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM----QRRY 291 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~----qr~~ 291 (1427)
..+++|+|..+|+++++++.+++.+.+.++ -+++.+++|+||+..-|+++-.++.-+|+-. + |.. |.+.
T Consensus 157 vMSSSGkGqsvv~~~e~ve~AW~~A~~g~R--~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-F----c~PIGHrq~dg 229 (394)
T COG0027 157 VMSSSGKGQSVVRSPEDVEKAWEYAQQGGR--GGSGRVIVEEFVKFDFEITLLTVRAVDGTGS-F----CAPIGHRQEDG 229 (394)
T ss_pred ccccCCCCceeecCHHHHHHHHHHHHhcCC--CCCCcEEEEEEecceEEEEEEEEEEecCCCC-c----CCCcccccCCC
Confidence 999999999999999999999999886544 2468999999999767777666654344321 1 333 2223
Q ss_pred ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
...-.+-|. .+++...++....|.++.++||-.|.+.||+++..| +.||-|+.||+....-+|-..-+++-++.++|.
T Consensus 230 dY~ESWQP~-~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gD-eV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RA 307 (394)
T COG0027 230 DYRESWQPQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRA 307 (394)
T ss_pred ChhcccCcc-ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCC-EEEEeecCCCCCCCceEEEEeccchHHHHHHHH
Confidence 334455677 699999999999999999999999999999999875 599999999999876666666689999999999
Q ss_pred HcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 372 AQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 372 A~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
.+|.|++.+... . +...+.|-+-....+| +-.|.-..+..| ...+|+.+. .. .+-...+|-.++
T Consensus 308 iLGLPi~~i~~~--~-P~AS~vI~~~~~~~~~-----~f~~l~~AL~~p-~t~vRlFGK-P~------~~~~RRmGVALA 371 (394)
T COG0027 308 ILGLPIPEIRQI--S-PAASAVILAQETSQAP-----TFDGLAEALGVP-DTQVRLFGK-PE------ADGGRRLGVALA 371 (394)
T ss_pred HhCCCccceeee--c-ccccceeeccccccCC-----chhhHHHHhcCC-CceEEEecC-Cc------ccCCceeeEEEe
Confidence 999998743211 1 1122333333333222 112322223332 335676621 11 011234898999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcc
Q psy15244 452 HTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
++++-++|++|++++.+.+.|.+
T Consensus 372 ~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 372 TAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred cCccHHHHHHHHHHHHhheecCC
Confidence 99999999999999999888754
No 90
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.97 E-value=3.8e-28 Score=281.04 Aligned_cols=292 Identities=23% Similarity=0.306 Sum_probs=234.1
Q ss_pred EEcCC-HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCc
Q psy15244 62 IANRS-EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGF 140 (1427)
Q Consensus 62 IagrG-eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gf 140 (1427)
..|+| ..+..+++++++. -...++.++.+..+.....||+++.+|. ..++| ++.++++|+++++|+++|++.-
T Consensus 3 wfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~eP~---~~~~y--v~~~l~~C~~~~Idv~~P~~~~ 76 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLEPA---DGEEY--VDWCLDFCKEHGIDVFVPGRNR 76 (329)
T ss_pred EecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeecCC---CHHHH--HHHHHHHHHHhCCeEEEcCccH
Confidence 34544 3456688888885 3344445566666888999999999873 44567 8899999999999999999753
Q ss_pred ccccHHHHHHHHHCCCceeC-CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc---EEEeec
Q psy15244 141 LSEREDFAKAVIGAGLEFIG-PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP---VILKAA 216 (1427)
Q Consensus 141 lsE~~~~a~~~e~~Gi~fiG-ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP---vVVKP~ 216 (1427)
.. .....+.+++.|+.+.- ++.++++++.||..+.+.+++.|||+|+++ .+++.++++++++++++| +.|||+
T Consensus 77 ~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~ 153 (329)
T PF15632_consen 77 EL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPA 153 (329)
T ss_pred HH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEecc
Confidence 21 33456688899999877 889999999999999999999999999997 799999999999998877 999999
Q ss_pred CCCCCcCeEEec-CHHHHHHHHH---------HHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccc
Q psy15244 217 FGGGGRGMRMVA-NKDAIEENFK---------RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS 286 (1427)
Q Consensus 217 ~GgGGrGV~iV~-s~eeL~~a~~---------~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s 286 (1427)
.|.||+|.++++ +.+++...++ ...+.-..+-.-.+++|++|++ |.|+||+++++. |+++....|.-.
T Consensus 154 ~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 154 VGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred cCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC-CCeEEEEEEecC-CEEEEEEEEEec
Confidence 999999999998 6666655444 1111111111247899999999 999999999996 888876555322
Q ss_pred cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHH
Q psy15244 287 MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQ 366 (1427)
Q Consensus 287 ~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~ 366 (1427)
.+.|.+. ...++.+.|.++++++|+.|.++|+|+.|.+|++++||||||++|+..++-. +|+|+..
T Consensus 232 --G~~q~l~-----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~~-aGvNlp~ 297 (329)
T PF15632_consen 232 --GRRQVLE-----------NDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSCA-AGVNLPY 297 (329)
T ss_pred --CceeEEE-----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHhh-cCCChHH
Confidence 1222222 1267899999999999999999999999999999999999999999877764 8999999
Q ss_pred HHHHHHcCCCCc
Q psy15244 367 SQIKIAQGKSLT 378 (1427)
Q Consensus 367 ~~i~iA~G~~l~ 378 (1427)
+.+..++|++.+
T Consensus 298 la~~~~lG~~~~ 309 (329)
T PF15632_consen 298 LAVKLALGEPIP 309 (329)
T ss_pred HHHHHHcCCCCC
Confidence 999999999875
No 91
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.97 E-value=1.6e-28 Score=294.35 Aligned_cols=247 Identities=20% Similarity=0.236 Sum_probs=199.9
Q ss_pred HHHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH
Q psy15244 120 PEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK 199 (1427)
Q Consensus 120 ~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee 199 (1427)
.+++++.++.+.... .-|++|+..++.+|+..||+++||+++++..+.||..+|++++++|||+|++......+.++
T Consensus 94 ~~~~~~~~~~~~~~~---~~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGK---ACFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCc---eEEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 566777777654221 23899999999999999999999999999999999999999999999999997333567777
Q ss_pred HHHHHHh--cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 200 VKEFCDE--VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 200 a~~~a~~--iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
+.+.++. +|||+||||+.|++|+|+++|++.+||..+++.+ +++..++||+||. ++|++|+++.+.+|++
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~-------~~~~~viVEe~I~-GrEitVev~vd~dG~V 242 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGI-------VGQPEIKVMKRIR-NVEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHh-------cCCCCEEEEeccC-cEEEEEEEEEeCCCCE
Confidence 7776765 9999999999999999999999999999877543 3457899999998 8999999999888877
Q ss_pred EEee------eeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEEEcC-CCcEEEEeeCC
Q psy15244 278 VHLY------ERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDK-DDNFYFIEVNP 347 (1427)
Q Consensus 278 v~l~------erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al---g~~G~~~VEflvd~-dG~~yfIEINp 347 (1427)
+... .+++...+.+....+.+|+ .++++..+++.+.|.++.++| ||.|.++|||+++. +|++||+||||
T Consensus 243 v~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 243 IGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 5421 1112212222222457788 699999999999999999998 89999999999995 58899999999
Q ss_pred CCCCchhHHHHHh--CCCHHH--HHHHHHcCCCCc
Q psy15244 348 RLQVEHTLSEEIT--GIDVVQ--SQIKIAQGKSLT 378 (1427)
Q Consensus 348 Rl~ge~~vte~~t--GiDLv~--~~i~iA~G~~l~ 378 (1427)
|++|+++++++++ |.|+.+ .+++..+|.|..
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 9999999988855 355554 555566888764
No 92
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=1.4e-27 Score=277.64 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=210.6
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHH
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAK 127 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~ 127 (1427)
++||.|+-+|. .+..+++++++.|++++.++.+.. .++.-..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~-----------------------------~~~~~l~ 53 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK-----------------------------ELVAKLL 53 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch-----------------------------hHHHHhh
Confidence 34777765443 345689999999999988753211 0111122
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE 206 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~ 206 (1427)
+.++|.++++ +|...|+..++..|+..||+++|++++++.++.||..+|++++++|||+|++. .+.+. ....+.
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~---~~~~~~ 128 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDK---LVAEDE 128 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchh---hhhHhh
Confidence 3479999987 46677888999999999999999999999999999999999999999999975 23321 123567
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeee--c
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER--D 284 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er--d 284 (1427)
++||+||||+.|++|+|+.+|++.+||..+++.+.. .+.++||+||+ |+|++|.++.++....+.+... .
T Consensus 129 ~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~~~~~~~i~~~~~~ 200 (296)
T PRK14569 129 ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDEVYSSVWIEPQNEF 200 (296)
T ss_pred cCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCcCcceEEEecCCCc
Confidence 899999999999999999999999999999877532 25799999999 7999999997643222222111 1
Q ss_pred ccc-ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHH
Q psy15244 285 CSM-QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEI 359 (1427)
Q Consensus 285 ~s~-qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~ 359 (1427)
+.. ....++.....|+ .++++..+++.+.|.+++++||++|.+++||+++++|++||+|||||++-. .+.....
T Consensus 201 ~~~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~ 279 (296)
T PRK14569 201 YDYESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAA 279 (296)
T ss_pred CChhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHH
Confidence 111 1122445566787 588889999999999999999999999999999988999999999999843 4455556
Q ss_pred hCCCHHHHHHHHH
Q psy15244 360 TGIDVVQSQIKIA 372 (1427)
Q Consensus 360 tGiDLv~~~i~iA 372 (1427)
.|+|+.+...++.
T Consensus 280 ~G~~~~~li~~ii 292 (296)
T PRK14569 280 EGVDFDSFVKRII 292 (296)
T ss_pred cCCCHHHHHHHHH
Confidence 8998888766554
No 93
>PRK06849 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=297.57 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=213.5
Q ss_pred CCCEEEEEcCC-HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRS-EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrG-eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
..++|||+|.+ .+++.++|++++.|++++++++.++..+.+++.+|+.+.++.+....+.| ++.|+++++++++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEE
Confidence 36799999955 58999999999999999999998877777788999999886443333445 7899999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVIL 213 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVV 213 (1427)
+|+.+.....+...+.++ .++.+++|++++++.+.||..++++++++|||+|++. .+.+.+++.++..+. +||+|+
T Consensus 81 IP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vl 157 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVL 157 (389)
T ss_pred EECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEE
Confidence 999874311112222332 3567889999999999999999999999999999987 688999998887776 999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
||+.|+||+|+.++.+.+++.... ...+.++++||||+ |.++++..+.. +|+++...............
T Consensus 158 KP~~~~~~~~v~~~~~~~~l~~~~---------~~~~~~~ivQe~I~-G~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~ 226 (389)
T PRK06849 158 KPIYSRFVRRVDLLPKEAALKELP---------ISKDNPWVMQEFIQ-GKEYCSYSIVR-SGELRAHSCYKPEYCAGSGA 226 (389)
T ss_pred EeCcccCCCeEEEecCHHHhcccc---------cCCCCCeEEEEEec-CCeEEEEEEEE-CCEEEEEEEeeccccCCCCc
Confidence 999999999999998855433211 11235799999999 66777777764 36666542211100001111
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHH
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte 357 (1427)
.+...|. ..++|.+.+.++++++||.|.+++||+++++|++|+||||||++++.+++.
T Consensus 227 ~~~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 227 QIAFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred eeEeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 1112222 135789999999999999999999999998899999999999998866553
No 94
>KOG0369|consensus
Probab=99.96 E-value=8.6e-29 Score=288.60 Aligned_cols=575 Identities=20% Similarity=0.240 Sum_probs=300.6
Q ss_pred heeeccceeEeecccccccchhhhhccccccccccccc-cccccccccc--cCCCeEEeecCcccCCCCCCCcccCHHHH
Q psy15244 607 TTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM-GAGEFVNSVR--KLKHILLTDTTFRDAHQSLLATRVRTYDL 683 (1427)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~~~~~~~~--~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~ 683 (1427)
+.||++|++|||||||||+||||+|||+|++||+++++ .+.+|+.... +... --+|+.||==|.++| -|+ +++
T Consensus 552 k~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGG-ATFDVamRFLhEcPW-eRL--~~l 627 (1176)
T KOG0369|consen 552 KAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGG-ATFDVAMRFLHECPW-ERL--REL 627 (1176)
T ss_pred HHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCC-chhhHHHHHHhcChH-HHH--HHH
Confidence 46889999999999999999999999999999999988 5666654332 2222 357999999999988 333 334
Q ss_pred HHHHHHHH--hhcCCccEEeccCCCchhhhhhcccc------Ch---HHHHHHHHHhCCCCceeeeecccc------ccc
Q psy15244 684 KKVSPFVA--NRFNNLYSLEMWGGAVSHTCLKFLKE------CP---WERLAELRELIPNIPFQMILRGNS------LVG 746 (1427)
Q Consensus 684 l~ia~~l~--~~~~G~~~iE~~ggatfd~~~rfl~e------~p---~erl~~lr~~~p~~~~qml~Rg~n------~vg 746 (1427)
.++.+.+- -++-|...+--. .---.+-+.|+.- |- ++.| ..+||..+.|-.-|.. .+-
T Consensus 628 RkliPNIPFQmLLRGANavgYs-syPDNviykFce~Ak~nGmDiFRVFDsL----N~lpnl~lGmeAagkAGGVVEAai~ 702 (1176)
T KOG0369|consen 628 RKLIPNIPFQMLLRGANAVGYS-SYPDNVIYKFCEQAKKNGMDIFRVFDSL----NYLPNLLLGMEAAGKAGGVVEAAIC 702 (1176)
T ss_pred HHhCCCCcHHHHhccccccccc-CCChhHHHHHHHHHHhcCcceeeehhhh----hhhhhhhhhHhhhhccCCeEEEEEe
Confidence 44333211 001122221110 0001122333311 00 1111 1123333333211110 111
Q ss_pred c---------cCCCcchHHHHHHHHHhcCCCEEEEeccCChH--HHHHHHHHHHHHhcCCCcEEEEEEE-eeccCCCCCC
Q psy15244 747 Y---------SNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--PNLVKGMDAVQQVTGGSTIVEATIC-YAGDLTNPNK 814 (1427)
Q Consensus 747 y---------~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--~~~~~~i~~a~~~G~~~~~v~~~i~-~t~d~~~p~~ 814 (1427)
| +.|.-+.--..+++..+.|..+..|=|-..-+ +..+..|.+.++.-- . ..|. .|.| .
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~P---d--lPiHvHtHD-----t 772 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFP---D--LPIHVHTHD-----T 772 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCC---C--CceEEeccC-----C
Confidence 2 12222222334556667777777666544422 344444555554321 0 0111 1111 1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEE--EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH--HHHHHhcC
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVL--CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT--LACVKAGA 890 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i--~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~--laAi~AGa 890 (1427)
+-.-+..+. ++..+|||.+ .+--|.|+..--.+-.++..+.-. |+ |.|+-+-+. +.|..++.
T Consensus 773 ---sGagVAsMl-aca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt----~~------Dt~l~~~~v~eysaYWe~~ 838 (1176)
T KOG0369|consen 773 ---SGAGVASML-ACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGT----PL------DTGLNLEHVREYSAYWEQM 838 (1176)
T ss_pred ---ccHHHHHHH-HHHHcCCceeeeecccccccccCCchhhhhhhccCC----cc------cCCCchHHHHHHHHHHHHH
Confidence 111223333 4456788864 444577766655666666665532 21 123322221 23444444
Q ss_pred CEEEeccccC-CCCCCCCcHHHHHHHHHhC--CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHH
Q psy15244 891 DIVDVAADSM-SGICSQPAMGTIVSCLENT--DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSY 967 (1427)
Q Consensus 891 d~VD~av~Gm-G~~tgn~~lE~vv~~L~~~--g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~ 967 (1427)
+.+=..+..- --..||+.. . ..+. |.-|.+.. +.-+--.-+-
T Consensus 839 R~LYapFe~tttmksgn~dV---Y--~hEIPGGQyTNL~F------------------------------QA~slGLG~q 883 (1176)
T KOG0369|consen 839 RLLYAPFECTTTMKSGNSDV---Y--QHEIPGGQYTNLQF------------------------------QAFSLGLGEQ 883 (1176)
T ss_pred hhhhchhhhcccccCCCcch---h--hccCCCcceeeeee------------------------------ehhhccchhh
Confidence 4322221110 012344432 1 1111 11122222 1222223455
Q ss_pred HHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHH
Q psy15244 968 WRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047 (1427)
Q Consensus 968 ~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~ 1047 (1427)
|..+.+.|..-+ .+.| +++.---+..-...|.+-.-+.+|.-+++.+ -.++|.+|-.| +=--|-.
T Consensus 884 ~~evKkaYrEAN--~lLG---DiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~----rA~~LsFP~SV-----vdf~qG~- 948 (1176)
T KOG0369|consen 884 FAEVKKAYREAN--LLLG---DIIKVTPSSKVVGDLAQFMVQNKLTRDDVER----RAEELSFPKSV-----VDFFQGL- 948 (1176)
T ss_pred HHHHHHHHHHHH--HHhh---CeeeeccchhhHHHHHHHHHhcCCCHHHHHH----HhhhcCCcHHH-----HHHHhcc-
Confidence 666766775432 1222 2222111222223566666677776555443 33456555433 1111111
Q ss_pred HHHcCCChhhhhhccccccccHhHHH-Hhcc---ccCCCCCCCCH---hHHHHHhCCCCCcccCCCCCCCccccccccCC
Q psy15244 1048 MTQEKLSYRDVMENADKIIFPKSVTE-FFQG---SIGEPYQGFPK---KLQEKVLDSLKDHALERKAEFDPIMACDYRED 1120 (1427)
Q Consensus 1048 ~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~g---~~g~~~~~~~~---~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~ 1120 (1427)
-|..|. -||+-... .++| .-|+|-...|+ +-.++-| ..|-+ .+
T Consensus 949 ---iGqP~g---------GFPEPlRs~VLk~~~r~~gRPG~~l~p~Dldai~keL------~e~~~------------~~ 998 (1176)
T KOG0369|consen 949 ---IGQPYG---------GFPEPLRSKVLKGKPRLTGRPGAELPPLDLDAIRKEL------QERHG------------DV 998 (1176)
T ss_pred ---cCCCCC---------CCCchhHHHHhcCCCccCCCCCCcCCccCHHHHHHHH------HHhcC------------CC
Confidence 122221 24443322 2233 22343333322 1112212 12222 25
Q ss_pred Cccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1121 EPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1121 ~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
.+.| +++.|||.|+++|++++++||++++||||.||++.|++||++ +..|.
T Consensus 999 s~~Dv~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~-Veie~--------------------------- 1050 (1176)
T KOG0369|consen 999 SECDVASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFE-VEIEQ--------------------------- 1050 (1176)
T ss_pred cHHHhhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEE-EEecc---------------------------
Confidence 6777 555699999999999999999999999999999999999997 66555
Q ss_pred cCCCCCCCccccc-CCCCCC-cEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchh
Q psy15244 1200 FGPVDKLPTRIFL-NGPNIG-EEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVF 1277 (1427)
Q Consensus 1200 ~~~~~~l~~~~f~-~g~~~g-~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~ 1277 (1427)
|..-.+-.-..- ..-+.| -+++++++ |+...|.+..++ . ..+.+.
T Consensus 1051 -GKTL~ik~lAvg~~~~~~GqReVfFeLN-GqlR~i~v~Dk~------a-------------------------~ke~v~ 1097 (1176)
T KOG0369|consen 1051 -GKTLIIKLLAVGDLLKKTGQREVFFELN-GQLRSIRVADKE------A-------------------------AKEIVT 1097 (1176)
T ss_pred -CcEEEEEeeecccccccCCceEEEEEec-CceeeEEeechh------h-------------------------hhhhcc
Confidence 211000000000 001223 36778887 887777633322 0 125567
Q ss_pred hhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCC
Q psy15244 1278 AFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTA 1357 (1427)
Q Consensus 1278 ~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~ 1357 (1427)
.|+++.+..-.+.++|.|...++.+++|+.+ .+ ||+..| .++ -...
T Consensus 1098 ~PkA~~~~~g~igAPMpG~vieikvk~G~kV-----------~K-----------gqpl~V-LSA-----------MKME 1143 (1176)
T KOG0369|consen 1098 RPKADPGVKGHIGAPMPGTVIEIKVKEGAKV-----------KK-----------GQPLAV-LSA-----------MKME 1143 (1176)
T ss_pred cccCCCCCcccccCCCCCceEEEEEecCcee-----------cC-----------CCceEe-eec-----------ceee
Confidence 7888999999999999999999999999987 33 444333 010 0134
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.-|.||+.|+|.++.|..|++|+.||.+++||
T Consensus 1144 mVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1144 MVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred eeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 56889999999999999999999999999987
No 95
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.96 E-value=1e-27 Score=283.43 Aligned_cols=297 Identities=21% Similarity=0.256 Sum_probs=219.2
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccce-EEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ-AFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe-~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
++||.|+-+|. .|..+++++++.||+++.++-+.+. .+. .-+. ...+..+.....++. +....
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g--~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~ 75 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDG--RWY-LIDADNMELADDDNDKEDLS----LLILP 75 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCC--CEe-eccchhhhcccccccccccc----hhccc
Confidence 55788775543 3556899999999999999876641 000 0000 000000000000110 11111
Q ss_pred Hhc--CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH----
Q psy15244 127 KNN--NVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK---- 199 (1427)
Q Consensus 127 ~~~--~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee---- 199 (1427)
+.. ++|+|+|. +|...|+..+...|+..|++|+|+++.+...+.||..+|++++++|||+|++. .+.+.++
T Consensus 76 ~~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~ 153 (333)
T PRK01966 76 SGGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEAS 153 (333)
T ss_pred cccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhh
Confidence 122 69999999 78888999999999999999999999999999999999999999999999986 3443332
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+..+.+.++||+||||..|+||.||.+|++.+||.++++.+.+. ++.++||+||+ |+|++|.++++ ++.+..
T Consensus 154 ~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~-G~E~~v~vl~~-~~~~~~ 225 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIK-GREIECAVLGN-DPKASV 225 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcC-CEEEEEEEECC-CCeEcc
Confidence 35566789999999999999999999999999999999876542 47899999999 79999999987 344433
Q ss_pred eeeeccc-----ccccc--ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 280 LYERDCS-----MQRRY--QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 280 l~erd~s-----~qr~~--qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
+.+..++ ....+ .......|+ .++++..+++.+.+.+++++||++|.+++||+++++|++||+|||||++-.
T Consensus 226 ~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t 304 (333)
T PRK01966 226 PGEIVKPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFT 304 (333)
T ss_pred cEEEecCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 3332221 11111 123456687 699999999999999999999999999999999988999999999999854
Q ss_pred ----hhHHHHHhCCCHHHHHHHH
Q psy15244 353 ----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 ----~~vte~~tGiDLv~~~i~i 371 (1427)
.+.....+|+|+.+..-++
T Consensus 305 ~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 305 PISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred cccHHHHHHHHcCCCHHHHHHHH
Confidence 2334456888887766554
No 96
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.96 E-value=3.3e-27 Score=275.88 Aligned_cols=277 Identities=22% Similarity=0.322 Sum_probs=216.9
Q ss_pred CCCCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 55 KTMEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 55 ~~~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
+|+++|.|+-+|. .+..++++++++|++++.++.+.+ +++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~------------------------------~~~~ 51 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED------------------------------IAAQ 51 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc------------------------------hHHH
Confidence 4556788776332 356799999999999998854422 2233
Q ss_pred HHhcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 126 AKNNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 126 a~~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
.+..++|+|++.+ |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|++. .+.+.+++..++
T Consensus 52 ~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~ 129 (304)
T PRK01372 52 LKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREEDLLAAI 129 (304)
T ss_pred hccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcchHHHHH
Confidence 3456799999974 4566888889999999999999999999999999999999999999999987 678888888889
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD 284 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd 284 (1427)
+++|||+||||..|+||+|+.++++.+|+.++++.+.. + +..+++|+||+ |+|++|.++.+....++.+....
T Consensus 130 ~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~~~~ 202 (304)
T PRK01372 130 DKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKALPVIEIVPAG 202 (304)
T ss_pred hhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCccceEEEEecC
Confidence 99999999999999999999999999999998876532 2 46899999999 89999999877433333221110
Q ss_pred --ccccc--ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHH
Q psy15244 285 --CSMQR--RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLS 356 (1427)
Q Consensus 285 --~s~qr--~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vt 356 (1427)
+.... .........|+ .++++..+++.+.+.++++++|+.|.+++||+++++|++||||+|||++-. .+..
T Consensus 203 ~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~ 281 (304)
T PRK01372 203 EFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMA 281 (304)
T ss_pred CEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHH
Confidence 01111 11223455666 588999999999999999999999999999999998999999999998743 2223
Q ss_pred HHHhCCCHHHHHHHH
Q psy15244 357 EEITGIDVVQSQIKI 371 (1427)
Q Consensus 357 e~~tGiDLv~~~i~i 371 (1427)
....|+|+.+....+
T Consensus 282 ~~~~g~~~~~~~~~i 296 (304)
T PRK01372 282 ARAAGISFSELVDRI 296 (304)
T ss_pred HHHcCCCHHHHHHHH
Confidence 334688877766554
No 97
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.96 E-value=2.1e-27 Score=283.08 Aligned_cols=176 Identities=24% Similarity=0.372 Sum_probs=146.3
Q ss_pred CCccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhh
Q psy15244 1120 DEPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRD 1198 (1427)
Q Consensus 1120 ~~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1198 (1427)
....| ++.+|||||+.+|.+.+++||++|.|||++||.||+.|||++ +..|+
T Consensus 972 ~~d~d~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~-v~ie~-------------------------- 1024 (1149)
T COG1038 972 VSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIE-VEIEK-------------------------- 1024 (1149)
T ss_pred chhHHHHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEE-EEecC--------------------------
Confidence 44556 456699999999999999999999999999999999999997 55555
Q ss_pred ccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhh
Q psy15244 1199 EFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFA 1278 (1427)
Q Consensus 1199 ~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~ 1278 (1427)
|+++.|.+ ..|. +++..++|+|||+||||.|.+.++++ ....+....
T Consensus 1025 -------------------GktLii~l-----~aig------e~d~~G~r~v~felNGq~R~i~v~Dr---s~~~~~~~r 1071 (1149)
T COG1038 1025 -------------------GKTLIIKL-----QAIG------EPDEKGMRTVYFELNGQPREIKVKDR---SVGSSVVAR 1071 (1149)
T ss_pred -------------------CcEEEEEe-----cccC------CCCcCCcEEEEEEeCCceeeeeeccc---ccccccccc
Confidence 89999955 4555 67788999999999999999999998 344457778
Q ss_pred hhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCC
Q psy15244 1279 FLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAG 1358 (1427)
Q Consensus 1279 ~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~ 1358 (1427)
++...+...++.++|.|...++.++.|+.+ .. |+..-+-. .-....
T Consensus 1072 ~KAd~~Np~higApmpG~Vv~v~V~~G~~V-----------k~-----------Gd~l~~ie------------AMKMEt 1117 (1149)
T COG1038 1072 RKADPGNPGHIGAPMPGVVVEVKVKKGDKV-----------KK-----------GDVLAVIE------------AMKMET 1117 (1149)
T ss_pred cccCCCCccccCCCCCCceEEEEEccCCee-----------cC-----------CCeeeehh------------hhhhce
Confidence 889999999999999999999999999987 22 33322100 001456
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|.||..|+|.+++|+.||+|..||.|++++
T Consensus 1118 ~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1118 TISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred eeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 7999999999999999999999999999876
No 98
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.96 E-value=1.1e-26 Score=272.61 Aligned_cols=275 Identities=21% Similarity=0.320 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHH-HHHH-HHhcCCCEEEeC-CCccccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPE-IICI-AKNNNVDAIHPG-YGFLSER 144 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~-Ii~i-a~~~~vDaI~pg-~gflsE~ 144 (1427)
.+..++++++++|++++.++...+... . +.+... +... ....++|+|+|. .|...|+
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~ 78 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSW----------T----------YKDLPQLILELGALLEGIDVVFPVLHGRYGED 78 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccc----------c----------ccchHHHHhhccccCCCCCEEEEecCCCCCCC
Confidence 366799999999999999987765311 0 011111 2111 122579999997 4566788
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC-CHH---HH--HHHHHhcCCcEEEeecCC
Q psy15244 145 EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT-DVD---KV--KEFCDEVEFPVILKAAFG 218 (1427)
Q Consensus 145 ~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~-s~e---ea--~~~a~~iGyPvVVKP~~G 218 (1427)
..++..|+..|++++|+++.++..+.||..++++++++|||+|++. .+. +.+ ++ ..+.+.++||+||||..|
T Consensus 79 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~ 156 (315)
T TIGR01205 79 GTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECEQVAEPLGFPVIVKPARE 156 (315)
T ss_pred cHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHHHHHHhcCCCEEEEeCCC
Confidence 8899999999999999999999999999999999999999999986 343 332 22 234568899999999999
Q ss_pred CCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEE-Eeeeecc---ccccc-c-c
Q psy15244 219 GGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVV-HLYERDC---SMQRR-Y-Q 292 (1427)
Q Consensus 219 gGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv-~l~erd~---s~qr~-~-q 292 (1427)
+||+||.+|++.+||.++++.+... +..+++|+||+ |+|+++.+++++++..+ .+..+.+ ..... + .
T Consensus 157 ~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (315)
T TIGR01205 157 GSSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDG 229 (315)
T ss_pred CCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCCCCeeCcccccCCC
Confidence 9999999999999999998876432 46899999999 99999999986543222 2211111 11111 1 1
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQSQ 368 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~~ 368 (1427)
......|+ .++++..++|.+.+.+++++||+.|.+++||+++++|++||||||||++.. .+..-...|+|..+..
T Consensus 230 ~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~ 308 (315)
T TIGR01205 230 STEYVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLV 308 (315)
T ss_pred CeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHH
Confidence 13344576 589999999999999999999999999999999988899999999998754 2233345788888777
Q ss_pred HHHH
Q psy15244 369 IKIA 372 (1427)
Q Consensus 369 i~iA 372 (1427)
..+.
T Consensus 309 ~~ii 312 (315)
T TIGR01205 309 ERIL 312 (315)
T ss_pred HHHH
Confidence 6653
No 99
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.95 E-value=5.2e-26 Score=270.23 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=213.6
Q ss_pred CEEEEEcCCHH---------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCC-CH---HHH--
Q psy15244 58 EKILIANRSEV---------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL-NI---PEI-- 122 (1427)
Q Consensus 58 kkVLIagrGei---------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yl-di---~~I-- 122 (1427)
.||.|+-+|.. |..+++++++.||+++.++.+.|..-......+..+..+..... ..+. ++ ..+
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSE-DLFLEEFQKANGVSE 80 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccc-ccccccccccccccc
Confidence 47777665542 45689999999999998886654210000011111111000000 0000 00 000
Q ss_pred HHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc----CCCH
Q psy15244 123 ICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP----VTDV 197 (1427)
Q Consensus 123 i~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~----v~s~ 197 (1427)
.......++|.++++ +|...|+..+...|+..|++++|+++.++..+.||..+|++++++|||+|++.... ..+.
T Consensus 81 ~~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~ 160 (347)
T PRK14572 81 PADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSP 160 (347)
T ss_pred cccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccCh
Confidence 011123468999988 67778999999999999999999999999999999999999999999999986211 1234
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc-c-
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY-G- 275 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~-G- 275 (1427)
+++.+..++++||+||||+.|++|+||.+|++.+||..+++.+.+. +..++||+||+ |+|++|.++.+.. |
T Consensus 161 ~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~-G~E~sv~vi~~~~~g~ 233 (347)
T PRK14572 161 RKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLS-GTEVSCGVLERYRGGK 233 (347)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCcc-cEEEEEEEEeCccCCC
Confidence 4555556789999999999999999999999999999999876532 56899999999 7999999997522 2
Q ss_pred -cEEEeeeecc-------cccccc--ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEee
Q psy15244 276 -DVVHLYERDC-------SMQRRY--QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEV 345 (1427)
Q Consensus 276 -~vv~l~erd~-------s~qr~~--qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEI 345 (1427)
+.+.+..... ....++ ....+..|+ .+++++.+++.+.|.+++++||+.|.+++||+++ +|++|++||
T Consensus 234 ~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEi 311 (347)
T PRK14572 234 RNPIALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILET 311 (347)
T ss_pred CCceecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEee
Confidence 2322221111 111111 234456788 5899999999999999999999999999999997 577999999
Q ss_pred CCCCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 346 NPRLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 346 NpRl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
|++++-. .+..-...|+++.+..-++
T Consensus 312 Nt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 312 NTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999843 2333345788877665544
No 100
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.95 E-value=4.7e-26 Score=270.30 Aligned_cols=294 Identities=20% Similarity=0.220 Sum_probs=212.1
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCc-cCccccc--------cceEEEcCCCCCcccCCCC
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDK-FSAHRTK--------VDQAFLVGKGMPPVAAYLN 118 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~-~s~~~~~--------aDe~~~i~~~~~~~~~yld 118 (1427)
++||.|+-+|. .|..+++++.+.||+++.++-+.+. ....... ....+..+ . ..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~--- 74 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSP-D----RK--- 74 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeecc-c----cc---
Confidence 45777775553 3556899999999999999865541 1000000 00011100 0 00
Q ss_pred HHHHHHH----HHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc
Q psy15244 119 IPEIICI----AKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP 193 (1427)
Q Consensus 119 i~~Ii~i----a~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~ 193 (1427)
...+... .+..++|.++|. +|...|+..+...++..|++++|+++.+...+.||..+|++++++|||+|++. .
T Consensus 75 ~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~ 152 (343)
T PRK14568 75 VHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--T 152 (343)
T ss_pred cccccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--E
Confidence 0000000 123569999998 78888999999999999999999999999999999999999999999999986 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecc
Q psy15244 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK 273 (1427)
Q Consensus 194 v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg 273 (1427)
+.+.++.. .+.++||+||||+.|++|+|+.+|++.+||.++++.+.+. ++.++||+||+ |+|+++.+++++
T Consensus 153 ~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~-G~E~sv~vl~~~ 223 (343)
T PRK14568 153 VTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVV-GSEVGCAVLGNG 223 (343)
T ss_pred EECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcC-CEEEEEEEEcCC
Confidence 44444322 3578999999999999999999999999999999876432 46899999999 899999999875
Q ss_pred cccEEE-eeeecc--ccccccc---------eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEE
Q psy15244 274 YGDVVH-LYERDC--SMQRRYQ---------KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFY 341 (1427)
Q Consensus 274 ~G~vv~-l~erd~--s~qr~~q---------k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~y 341 (1427)
.+..+. +.+... ...+.++ ......|+ .++++..+++.+.+.+++++||+.|.+++||+++++|++|
T Consensus 224 ~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~ 302 (343)
T PRK14568 224 ADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVV 302 (343)
T ss_pred CCcceecceEEecCCCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEE
Confidence 432221 111000 1111111 22345687 6999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCc----hhHHHHHhCCCHHHHHHH
Q psy15244 342 FIEVNPRLQVE----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 342 fIEINpRl~ge----~~vte~~tGiDLv~~~i~ 370 (1427)
|+|||++++-. .+..-.+.|+++.+..-+
T Consensus 303 llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 303 LNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 99999999854 122234567776555443
No 101
>KOG2368|consensus
Probab=99.95 E-value=1.3e-26 Score=242.55 Aligned_cols=264 Identities=20% Similarity=0.239 Sum_probs=226.6
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc--cChHHHHHHHHHhCCCC
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWERLAELRELIPNI 733 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~erl~~lr~~~p~~ 733 (1427)
.++++|+++.-|||-|..- .-++|+-|+++...|.+ +|+..+|..+ | ++-.+.. -|--|-++.+++ .|
T Consensus 16 ~~~vkiVEVGpRDGLQnEk-~~vpt~vKveLI~~Lse--~Gl~~vEtTS---F-VSpKWVPQl~D~~ev~k~i~~-~~-- 85 (316)
T KOG2368|consen 16 PKRVKIVEVGPRDGLQNEK-NIVPTEVKVELIDRLSE--CGLQVVETTS---F-VSPKWVPQLADHNEVMKGIRK-FP-- 85 (316)
T ss_pred cceeEEEEecCcccccccC-ccCCchHHHHHHHHHHH--cCCceeeeec---c-cCccccccccchHHHHHhhhc-CC--
Confidence 5789999999999999765 66999999999999999 8999999864 1 1111110 122333443332 12
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEE
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v 799 (1427)
.+.|.-..+|... .+.|.++|...+.||.+.|+. ..++...++|++++. .+
T Consensus 86 ----------Gv~yPVLtPNlkG--f~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni---~v 150 (316)
T KOG2368|consen 86 ----------GVSYPVLTPNLKG--FEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNI---RV 150 (316)
T ss_pred ----------CccccccCcchhh--HHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCC---cc
Confidence 3456666788777 889999999999999999863 345667778888888 88
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHH
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
.++++.. ++||+.+...++.+.++++++.++|+-.|.|.||.|+.+|..+.++..++-+.+|.-.+.+|||||+|.|+
T Consensus 151 RGYVScv--vGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQAL 228 (316)
T KOG2368|consen 151 RGYVSCV--VGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQAL 228 (316)
T ss_pred ceEEEEE--ecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHH
Confidence 9988887 68999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhcCCEEEeccccCCCC------CCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMSGI------CSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG~~------tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~ 946 (1427)
||.|.+++.|+++||.++.|+||| +||.++|+++++|+++|++||+||.+|.+.++++.+.+|+.-.
T Consensus 229 aNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~ 301 (316)
T KOG2368|consen 229 ANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTW 301 (316)
T ss_pred HHHHHHHHhcceehhhhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999 6999999999999999999999999999999999999998743
No 102
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.95 E-value=1.2e-25 Score=267.56 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=213.9
Q ss_pred CCEEEEEcCCHH---------HHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCC-CCcccCCC----CHHH
Q psy15244 57 MEKILIANRSEV---------AIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG-MPPVAAYL----NIPE 121 (1427)
Q Consensus 57 ~kkVLIagrGei---------a~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~-~~~~~~yl----di~~ 121 (1427)
++||.|+-+|.. |..+++++ .+.+++++.|+-+.+. ..+. ..+........ ......+. ....
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCT-GIWY-LLDSVPDPPKLIKRDVLPIVSLIPGCGI 79 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCC-CeEE-ecCccccccccccccccccccccccccc
Confidence 557887765543 44689998 6789999988765441 0000 01000000000 00000000 0000
Q ss_pred HHHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccc----cCCC
Q psy15244 122 IICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTE----PVTD 196 (1427)
Q Consensus 122 Ii~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~----~v~s 196 (1427)
+.. .+..++|.|+|. .|...|+..+...|+.+|||++|++..+..++.||..+|++++++|||+||+... ...+
T Consensus 80 ~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 80 FVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred ccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc
Confidence 110 122468999998 6777799999999999999999999999999999999999999999999997521 1124
Q ss_pred HHHHHH-HHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 197 VDKVKE-FCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 197 ~eea~~-~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
.+++.+ +.+.+|||+||||+.+++|.||.+|++.+||..+++.+... ++.++||+||+ |+|++|.+++++..
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~-GrEi~v~Vlg~~~~ 231 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIE-AREIECSVIGNEQI 231 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcC-CEEEEEEEECCCCc
Confidence 455544 34679999999999999999999999999999999877532 46799999999 89999999987654
Q ss_pred cEEEeeeecc------cccc-----ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEE
Q psy15244 276 DVVHLYERDC------SMQR-----RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFI 343 (1427)
Q Consensus 276 ~vv~l~erd~------s~qr-----~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfI 343 (1427)
.+....+... ++.. ..+......|+ .++++..++|.+.|.++.++||++|.+.+||++++ +|++||+
T Consensus 232 ~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvl 310 (364)
T PRK14570 232 KIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLN 310 (364)
T ss_pred eEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEE
Confidence 4444333211 1111 11223445687 59999999999999999999999999999999996 5899999
Q ss_pred eeCCCCCCc----hhHHHHHhCCCHHHHHHH
Q psy15244 344 EVNPRLQVE----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 344 EINpRl~ge----~~vte~~tGiDLv~~~i~ 370 (1427)
|||++++-. .+..-...|+++.+..-+
T Consensus 311 EiNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 341 (364)
T PRK14570 311 EINTIPGFTDISMFAKMCEHDGLQYKSLVDN 341 (364)
T ss_pred EeeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 999999843 233334478876654433
No 103
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.94 E-value=5.6e-28 Score=235.82 Aligned_cols=107 Identities=40% Similarity=0.775 Sum_probs=101.6
Q ss_pred EEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc
Q psy15244 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 395 ~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
|||||||||.++|.|++|+|+.+++|+++|||+|+ +++.|+.|+++||||+||||+||.||++|++||.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt-~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDT-GVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEE-SESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEe-cCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC
Confidence 79999999999999999999999999999999995 48999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHhhcCCcccccCCcccccccc
Q psy15244 475 VTTNLPFLLNVFDDKKFLSGEALETNFID 503 (1427)
Q Consensus 475 v~tni~~l~~~l~~~~f~~g~~~~t~~i~ 503 (1427)
++||++||++||.||+|++| +++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g-~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSG-TYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT--SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccC-CCeeeccC
Confidence 99999999999999999999 99999986
No 104
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.94 E-value=1.6e-24 Score=252.67 Aligned_cols=254 Identities=19% Similarity=0.265 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDF 147 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~ 147 (1427)
+..++++++++|++++.++...+- ... +.+..++|.|++. .|...|+..+
T Consensus 21 ~~~i~~al~~~g~~~~~i~~~~~~--------------------------~~~---~~~~~~~D~v~~~~~g~~ge~~~~ 71 (299)
T PRK14571 21 GERVKKALEKLGYEVTVFDVDEDF--------------------------LKK---VDQLKSFDVVFNVLHGTFGEDGTL 71 (299)
T ss_pred HHHHHHHHHHcCCeEEEEccCchH--------------------------HHH---hhhccCCCEEEEeCCCCCCCccHH
Confidence 556899999999999988654320 001 1122458999987 4555688889
Q ss_pred HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEe
Q psy15244 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227 (1427)
Q Consensus 148 a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV 227 (1427)
+..|+..|++++|+++.++..+.||..++++++ +|||+|++. .+.+.. ....++||+||||..|+||+||.+|
T Consensus 72 ~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v 144 (299)
T PRK14571 72 QAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPLGYPCVVKPRREGSSIGVFIC 144 (299)
T ss_pred HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhcCCCEEEecCCCCCcCCEEEE
Confidence 999999999999999999999999999999998 589999986 343322 2457899999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccccc-EEEeeeecc-----ccccc--cceEEEEcc
Q psy15244 228 ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLYERDC-----SMQRR--YQKVIQIAP 299 (1427)
Q Consensus 228 ~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~erd~-----s~qr~--~qk~ie~aP 299 (1427)
++.+||.++++.+... .+.++||+||+ |+|++|.+++++.+. ++.+.+..- ..... ........|
T Consensus 145 ~~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 145 ESDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred CCHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeC
Confidence 9999999988765421 35799999999 899999999976443 333332210 01101 112233457
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHH
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQS 367 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~ 367 (1427)
+ .++++..++|.+.+.++++++|+.|.+++||+++ +|++||+|||++++-. .+..-...|+|+.+.
T Consensus 218 ~-~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~l 287 (299)
T PRK14571 218 A-PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEEL 287 (299)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHH
Confidence 7 5899999999999999999999999999999997 4679999999999854 222223478877663
No 105
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.93 E-value=1e-26 Score=227.47 Aligned_cols=107 Identities=40% Similarity=0.799 Sum_probs=104.0
Q ss_pred EEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc
Q psy15244 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 395 ~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
|||||||||.++|.|++|+|+.+++|+++|+|+|+ .++.|+.|+++||||+||||+||+||++|++||.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt-~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDS-GVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEc-cCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC
Confidence 69999999999999999999999999999999995 47899999999999999999999999999999999999999999
Q ss_pred cccCHHHHHhhcCCcccccCCcccccccc
Q psy15244 475 VTTNLPFLLNVFDDKKFLSGEALETNFID 503 (1427)
Q Consensus 475 v~tni~~l~~~l~~~~f~~g~~~~t~~i~ 503 (1427)
++||++||++||.||+|++| +++|+||+
T Consensus 80 v~TN~~~l~~ll~~~~f~~g-~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAG-DVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcC-cccccccC
Confidence 99999999999999999999 99999985
No 106
>KOG0370|consensus
Probab=99.93 E-value=1.8e-26 Score=277.54 Aligned_cols=430 Identities=21% Similarity=0.329 Sum_probs=340.2
Q ss_pred CCCEEEEEcCCHHHH-----------HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEVAI-----------RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGeia~-----------riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
+.+|+||+|.|...+ ..++|++|-|+.++++..+-........+||..|.++ ...+.+-.
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp---------vT~~~vt~ 446 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP---------VTPEYVTK 446 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee---------cCHHHHHH
Confidence 458999999875544 4799999999999999888777777778999999997 55677888
Q ss_pred HHHhcCCCEEEeCCCcccc-cH--HHHH--HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSE-RE--DFAK--AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK 199 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE-~~--~~a~--~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee 199 (1427)
..+...+|+|..++|.-.- |. ++-+ .+++.|....|-+.+++....|+..+-+.+.+.+.++.++. .+++.++
T Consensus 447 vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~--a~~sie~ 524 (1435)
T KOG0370|consen 447 VIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSE--AVSTIEE 524 (1435)
T ss_pred HHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchh--hHhHHHH
Confidence 8888999999988773211 11 2222 56778899999999999999999999999999999999975 7899999
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+.++++++|||+|+.+++.-||-|--.+++.+||.+....+.+. ...++||+-+.|.+|+|.+++.|..+|++.
T Consensus 525 al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 525 ALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred HHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhh
Confidence 99999999999999999999999999999999999887766543 578999999999999999999999999998
Q ss_pred eeeecccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCc
Q psy15244 280 LYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 280 l~erd~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge 352 (1427)
+ |.+.. +....+-.+|++.|+++.++.++..|.++.++||..|-+++++.+++ .-++++||+|+|++.+
T Consensus 599 v----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrs 674 (1435)
T KOG0370|consen 599 V----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRS 674 (1435)
T ss_pred h----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeeh
Confidence 7 55443 34667789999999999999999999999999999999999999998 4569999999999999
Q ss_pred hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC-
Q psy15244 353 HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC- 431 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~- 431 (1427)
..+...+||..|.....++++|.+|++++ ..+.-... ..|.|+-..+... . -|||-..
T Consensus 675 saLASkaTgypLAy~aAKlalg~~lpe~~---n~Vt~~T~------------AcFEpslDY~v~K-i-----prWDl~kf 733 (1435)
T KOG0370|consen 675 SALASKATGYPLAYTAAKLALGIPLPELK---NSVTKTTT------------ACFEPSLDYCVVK-I-----PRWDLSKF 733 (1435)
T ss_pred hhhhccCccCcHHHHHHHHhcCcccccCC---ccccccee------------cccCcchhheeee-c-----ccccHHHH
Confidence 99999999999999999999999998763 22222222 2577876654332 1 1444221
Q ss_pred cCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccccCHHH---HHhhcCCcc----cccCCccccc-ccc
Q psy15244 432 PYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPF---LLNVFDDKK----FLSGEALETN-FID 503 (1427)
Q Consensus 432 ~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tni~~---l~~~l~~~~----f~~g~~~~t~-~i~ 503 (1427)
.+....|...+.| +|.|++.|+++|||.+|+.|..+. .+.|.. ..++ +..-|+.|. |.-.....-+ .+|
T Consensus 734 ~~vs~~igssmKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~-~~~~~~~~~~eL~~ptd~r~faia~a~~~~~svd 810 (1435)
T KOG0370|consen 734 QRVSTEIGSSMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM-STPFLDDLDEELSTPTDRRVFAIAAALAKGYSVD 810 (1435)
T ss_pred HHHHHhhchhhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc-cccchhhHHHHhcCCccccHHHHHHHHHhcCCHH
Confidence 1222334444444 899999999999999999998854 566764 3333 334455554 2211111222 267
Q ss_pred CcchhhhcCCcchhHHHHHHHHHHHhh
Q psy15244 504 DNPQLLERNSYQTCRDMKILRFIGETL 530 (1427)
Q Consensus 504 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 530 (1427)
+..+|+.++.|++.+...|++....+.
T Consensus 811 ~~~elt~IdkWFL~k~~~i~~~~~~l~ 837 (1435)
T KOG0370|consen 811 RIHELTRIDKWFLYKLMNIVNIYKLLE 837 (1435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999888888887777663
No 107
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.93 E-value=3.7e-24 Score=280.22 Aligned_cols=299 Identities=21% Similarity=0.239 Sum_probs=217.6
Q ss_pred CCEEEEEcCCHH---------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHH
Q psy15244 57 MEKILIANRSEV---------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAK 127 (1427)
Q Consensus 57 ~kkVLIagrGei---------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~ 127 (1427)
++||.|+-+|.. |..+++++.+.||+++.++-..+. .+........... .......+. ..+. -.
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g--~~~~~~~~~~~~~-~~~~~~~~~--~~~~--~~ 523 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQG--LWETVSSLETAIE-EDSGKSVLS--SEIA--QA 523 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCC--eEEeccccccccc-ccccccccc--hhhh--hc
Confidence 457877765543 556899999999999998865542 1111100000000 000000111 1111 01
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC------CHH-H
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT------DVD-K 199 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~------s~e-e 199 (1427)
..++|.++|. .|...|+..+...|+..||+|+|+++.+...+.||..+|++++++|||+|++. .+. +.+ .
T Consensus 524 ~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~~ 601 (809)
T PRK14573 524 LAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPELC 601 (809)
T ss_pred cccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHHH
Confidence 1468999998 57778999999999999999999999999999999999999999999999986 332 222 2
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+.++.+.+|||+||||+.+|+|.||.+|++.+||.++++.+... +.+++||+||.+++|++|.+++++.+..+.
T Consensus 602 ~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~ 675 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVI 675 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEe
Confidence 35567789999999999999999999999999999999876532 578999999997899999999987654322
Q ss_pred --eeeecc-----ccccccc----e-EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC
Q psy15244 280 --LYERDC-----SMQRRYQ----K-VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347 (1427)
Q Consensus 280 --l~erd~-----s~qr~~q----k-~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp 347 (1427)
..++.+ .++..+. . .....|+ .+++++.+++.+.|.++.++||++|.++|||+++++|++||+||||
T Consensus 676 ~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt 754 (809)
T PRK14573 676 AGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDL-DLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNP 754 (809)
T ss_pred ccceEEccCCCeeCchhcccCCCCCceEEecCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeC
Confidence 233322 1222221 1 1223466 6999999999999999999999999999999999889999999999
Q ss_pred CCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 348 RLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 348 Rl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
|++-. .+..-...|++..+..-++
T Consensus 755 ~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 755 IPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99943 2333345788766554443
No 108
>KOG0237|consensus
Probab=99.93 E-value=4.4e-23 Score=240.37 Aligned_cols=403 Identities=15% Similarity=0.192 Sum_probs=285.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+.+|||+|.|.---.++..+++.-.- --||..+.+..... -|.. .++ .-.+ +-.|.+++.++|+++++..|+|
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v-~~v~vaPGn~G~a~--~~~~-~~~--~~dI-~~~d~~ala~f~~e~~I~lVvv 74 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKV-KKVYVAPGNGGTAS--GDAS-KVP--NLDI-SVADFEALASFCKEHNINLVVV 74 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCcc-ceEEEccCCCCccc--Cccc-cCc--cccc-ChhhHHHHHHHHHHcceeEEEE
Confidence 45899999985555677777775432 12232222211111 1111 111 0001 1246899999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP 215 (1427)
|.+.- -...++..+.+.||+++||+.+++++..+|..+|++|.++|||+..|. .+++.+++..|.++.+| ++|||+
T Consensus 75 GPE~P-L~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~--~ft~~e~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 75 GPELP-LVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK--TFTDPEEAKSFIQSATDKALVIKA 151 (788)
T ss_pred CCchh-hhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee--eeCCHHHHHHHHHhCCCcceEEee
Confidence 98521 112678889999999999999999999999999999999999999986 78999999999999995 599999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eec------cc
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERD------CS 286 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd------~s 286 (1427)
..-+.|+||.+..+.+|.-++++.....- .|| ...++|||+++ |.|+++-.+.||. .+..+- ..| -.
T Consensus 152 dGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LE-GeEvS~laftDG~-s~~~mp~aQDHKRl~dgD 227 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLE-GEEVSFLAFTDGY-SVRPLPPAQDHKRLGDGD 227 (788)
T ss_pred cccccCCceEeeccHHHHHHHHHHHHhhh--hhccccceEehhhhcC-cceEEEEEEecCc-ccccCCcccchhhhcCCC
Confidence 99999999999999999999999887653 344 57899999999 9999999999986 333221 111 11
Q ss_pred cccccceEEEEccCCCCCHHHHHHHHHHHHH-HH-----HHcCCCCeEEEEEEEcCCCcEEEEeeCCCCC-CchhHHHHH
Q psy15244 287 MQRRYQKVIQIAPAQDMSVSVRDAITETSVR-LA-----KSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ-VEHTLSEEI 359 (1427)
Q Consensus 287 ~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~-l~-----~alg~~G~~~VEflvd~dG~~yfIEINpRl~-ge~~vte~~ 359 (1427)
...+...+..++|+|..++++.+.+.+...+ .+ +.+.|.|+...-++++++| |.++|.|.|++ .|.++.-..
T Consensus 228 ~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQv~l~l 306 (788)
T KOG0237|consen 228 TGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQVLLPL 306 (788)
T ss_pred CCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhhhhHHH
Confidence 2233456778899999998877766655443 22 2456779999999999988 99999999999 667777777
Q ss_pred hCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccC--CCcCCCce
Q psy15244 360 TGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDS--SCPYPGLQ 437 (1427)
Q Consensus 360 tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~--~~~~~G~~ 437 (1427)
..-||++.++..+.|. |..+.+.+.. +....-+.+......-.-....|+.+..+..++.|+.. ..+..+..
T Consensus 307 LesDL~evi~a~~~~~-L~~~~i~w~~-----~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~v 380 (788)
T KOG0237|consen 307 LESDLAEVILACCNGR-LDTVDIVWSK-----KSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNV 380 (788)
T ss_pred HHhHHHHHHHHHhhCC-ccccCccccc-----cceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccce
Confidence 7889999988877776 5544444443 22223334333221111122235555555555655542 23334422
Q ss_pred ecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc--cccCHHHH
Q psy15244 438 ISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG--VTTNLPFL 482 (1427)
Q Consensus 438 I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G--v~tni~~l 482 (1427)
++ + .+.+-.|++.+.|.++|.++++.+++.+.+.| .+++|.|.
T Consensus 381 vT-N-GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237|consen 381 VT-N-GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR 425 (788)
T ss_pred Ee-c-CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhhh
Confidence 22 2 44456699999999999999999999999988 36666653
No 109
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=231.52 Aligned_cols=350 Identities=20% Similarity=0.251 Sum_probs=245.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCccc--CCCCHHHHHHHHHhc--CCC
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA--AYLNIPEIICIAKNN--NVD 132 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~--~yldi~~Ii~ia~~~--~vD 132 (1427)
+-|||++|-. .+.+..+|.++|+++..+....+..-. ..++..+....+ .... .-+|.++|++.+.+. .+|
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~-~~~~rfe~~de~~li~~~~~~~~dvD 85 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPG-ELLGRFENLDEQKLIEAAEDLAEDVD 85 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecCh-hhcCcccCCCHHHHHHHHHhhhhhcc
Confidence 5689999965 678999999999999988543332222 345555443321 1111 135778999998774 478
Q ss_pred E-EEeCCCcccccHHHHHHHHHCCCceeCCCHH-HHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc
Q psy15244 133 A-IHPGYGFLSEREDFAKAVIGAGLEFIGPAPN-VLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP 210 (1427)
Q Consensus 133 a-I~pg~gflsE~~~~a~~~e~~Gi~fiGps~e-ai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP 210 (1427)
+ |+|+.||...+. --..+..+.|++++ ....+.+|..+.+.+..+|.|.|+.. .. +. ...--++
T Consensus 86 ~~ii~~sg~e~l~~-----~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e~----~~~gekt 151 (389)
T COG2232 86 APIIPFSGFEALRT-----SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---EP----LEEGEKT 151 (389)
T ss_pred eeeeeccccccccc-----cCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---hh----hhhccee
Confidence 8 888888744331 12345667788888 88999999999999999999999854 11 11 1222368
Q ss_pred EEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc---
Q psy15244 211 VILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM--- 287 (1427)
Q Consensus 211 vVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~--- 287 (1427)
+|+||+.|+||. +.++.-.++.. ..++++|+||+ |+++||.++++|.......+.+..-.
T Consensus 152 ~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~-G~p~Svs~is~g~~a~~la~N~QiI~~~~ 214 (389)
T COG2232 152 LILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIE-GRPVSVSFISNGSDALTLAVNDQIIDGLR 214 (389)
T ss_pred eEEeeccCCCce-eeecccccccC---------------CcceehhhhcC-CceeEEEEEecCcceEEEEEeeeeecccc
Confidence 999999999996 33333222211 15899999999 99999999999864333222211100
Q ss_pred --ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHH
Q psy15244 288 --QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVV 365 (1427)
Q Consensus 288 --qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv 365 (1427)
...+...+...|.+... .+++.+.|..++..||+.|...|||++.+.| +|+||||||+||.....|+.+|+|++
T Consensus 215 ~~~~~f~Y~GNlTP~~~~~---~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~ 290 (389)
T COG2232 215 GEYSQFVYKGNLTPFPYEE---VEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLF 290 (389)
T ss_pred cccccceeccCcCCCcchh---hHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHH
Confidence 01122334556664322 2788999999999999999999999999877 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccc
Q psy15244 366 QSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSL 445 (1427)
Q Consensus 366 ~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~ 445 (1427)
++++++..|+- ++.+.++++|+...+|+..- .+ +..+ ...++| | ...+|.+|.+ +-.
T Consensus 291 ~lHi~af~G~L-------pEr~kpr~~a~krILyap~~--v~------v~~l---~~~~~~-D--iP~~Gtviek--geP 347 (389)
T COG2232 291 RLHIQAFDGEL-------PERPKPRGYACKRILYAPRT--VR------VPIL---KLSWTH-D--IPRPGTVIEK--GEP 347 (389)
T ss_pred HHHHHHhcCcC-------cCCCCcceeEEeEEEeccce--ee------cccc---cccccc-c--CCCCCcccCC--CCc
Confidence 99999999983 35667899998877765322 12 2110 112333 2 2456666654 334
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhc
Q psy15244 446 LAKIIVHTATYKSSCEKMRRALEE 469 (1427)
Q Consensus 446 l~kvi~~G~~~~eA~~r~~raL~e 469 (1427)
++.|++.+.++++|.+-+.|.++.
T Consensus 348 l~sviA~~nt~~~a~~~~er~~er 371 (389)
T COG2232 348 LCSVIASSNTRSGAESMAERLAER 371 (389)
T ss_pred eeeeeeccCCHHHHHHHHHHHHHH
Confidence 899999999999999977777654
No 110
>KOG0370|consensus
Probab=99.91 E-value=6.8e-23 Score=247.14 Aligned_cols=303 Identities=16% Similarity=0.306 Sum_probs=259.3
Q ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 57 MEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 57 ~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
.+-++|+|.|-. |+..+|.+|++|++|+.|..++...+.....||+.|.-. ++.+.++++
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFee---------is~E~vmDi 988 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEE---------ISYERVMDI 988 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHhh---------hhhhhhhhh
Confidence 468899998743 445799999999999999999999999999999998743 567888998
Q ss_pred HHhcCCCEEEeCCC-cccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 126 AKNNNVDAIHPGYG-FLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 126 a~~~~vDaI~pg~g-flsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
-.......|+-..| -+.-| +|-.+.+.|.+++|.+|+.+..+.|+..+.+++.+.||..|+|. .+++.+++.+|+
T Consensus 989 Ye~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wk--elt~~~eA~~F~ 1064 (1435)
T KOG0370|consen 989 YELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWK--ELTSLEEAKKFA 1064 (1435)
T ss_pred hhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhh--hhccHHHHHHHH
Confidence 88888887777765 44333 57788899999999999999999999999999999999999997 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe--ee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL--YE 282 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l--~e 282 (1427)
+++||||+|.|++--.|.-|-++++.+||+..++.+..-++ ++++++-+||++.+|++|+.++. +|+++.. .|
T Consensus 1065 ~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSE 1139 (1435)
T KOG0370|consen 1065 EKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISE 1139 (1435)
T ss_pred HhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhcc-CCeEEEEehhh
Confidence 99999999999999999999999999999999988765443 79999999999999999999975 3565532 22
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
.--.-.-+...-.-..|++.++++..+++.+++.++++++.+.|+++++|+... +++.+||+|-|.+.+.|+.....|+
T Consensus 1140 HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~-n~lkVIECN~RaSRSFPFvSKtlgv 1218 (1435)
T KOG0370|consen 1140 HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD-NELKVIECNVRASRSFPFVSKTLGV 1218 (1435)
T ss_pred hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC-CeEEEEEeeeeeeccccceehhcCc
Confidence 111111122333446688899999999999999999999999999999999865 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCc
Q psy15244 363 DVVQSQIKIAQGKSLT 378 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~ 378 (1427)
|+++...+..+|.+++
T Consensus 1219 dfi~~At~~i~g~~~~ 1234 (1435)
T KOG0370|consen 1219 DFIALATRAIMGVPVP 1234 (1435)
T ss_pred hHHHHHHHHHhCCCCC
Confidence 9999999999998875
No 111
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.90 E-value=3.1e-22 Score=230.32 Aligned_cols=266 Identities=20% Similarity=0.290 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc
Q psy15244 65 RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER 144 (1427)
Q Consensus 65 rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~ 144 (1427)
.+....+++++|+++|+++..+...... +.+... . .....+|+|++........
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~~~-----------~~~~~~--~-------------~~~~~~d~v~~r~~~~~~~ 62 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPAIP-----------LTFNEG--P-------------RELAELDVVIVRIVSMFRG 62 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHHcE-----------EeccCC--C-------------ccCCCCCEEEEechhHhhH
Confidence 4556678999999999998888543221 111100 0 0023478888765222233
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCe
Q psy15244 145 EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGM 224 (1427)
Q Consensus 145 ~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV 224 (1427)
..+++.++..|+++++ +++++..+.||..++++++++|+|+|++. .+.+.+++.++.++++||+|+||..|+||+|+
T Consensus 63 ~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv 139 (277)
T TIGR00768 63 LAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFGSWGRLV 139 (277)
T ss_pred HHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcCCCCCce
Confidence 4678889999999875 58999999999999999999999999986 67889999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec--cccccccceEEEEccCCC
Q psy15244 225 RMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD--CSMQRRYQKVIQIAPAQD 302 (1427)
Q Consensus 225 ~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd--~s~qr~~qk~ie~aPa~~ 302 (1427)
.++++.+++.++++...... -....+++|+||++....++.++..+ |+++....|. .....+...-....|. .
T Consensus 140 ~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~-~ 214 (277)
T TIGR00768 140 SLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVVG-DEVIAAIYRITSGHWRTNLARGGKAEPC-P 214 (277)
T ss_pred EEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEEC-CEEEEEEEEcCCCchhhhhhcCCeeeec-C
Confidence 99999999998876543321 11257999999995432444444432 4566555442 1111110011112233 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 303 MSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 303 l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
++ +++.+.+.++++++|+ +.+.+||+++++|++||+|+|+|++.. ..+..+|+|+.+++++.
T Consensus 215 l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 215 LT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 44 4678899999999999 788999999998889999999998743 45678999999988763
No 112
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.90 E-value=1.4e-22 Score=267.28 Aligned_cols=171 Identities=27% Similarity=0.402 Sum_probs=137.1
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
++++|||+|..+|.+.+++||+++.|||++||.||+.|||+. +..++
T Consensus 973 ~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~-v~~~~-------------------------------- 1019 (1143)
T TIGR01235 973 ASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIE-VDIEK-------------------------------- 1019 (1143)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEE-EEecC--------------------------------
Confidence 778899999999999999999999999999999999999886 43333
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
|+++.|.+. .+. .++.++.|+|||++||+.+.+.+.+.+..... ...++...+
T Consensus 1020 -------------g~~~~i~~~-----~~~------~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~---~~~~KAd~~ 1072 (1143)
T TIGR01235 1020 -------------GKTLIIKLQ-----AVG------ATDSQGEREVFFELNGQPRRIKVPDRSHKAEA---AVRRKADPG 1072 (1143)
T ss_pred -------------CcEEEEEec-----ccc------ccCCCCcEEEEEEECCeEEEEEecCccccccc---ccccccccc
Confidence 898888664 333 34556899999999999999999988654422 223444456
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....|.++|.|...+|.+++|+.+ .. |..-+.+|-. .....|.||.
T Consensus 1073 ~~~~I~a~~~G~v~~~~v~~Gd~V-----------~~-Gd~L~~iEam----------------------Km~~~I~Ap~ 1118 (1143)
T TIGR01235 1073 NPAHVGAPMPGVIIEVKVSSGQAV-----------NK-GDPLVVLEAM----------------------KMETAIQAPK 1118 (1143)
T ss_pred cCceeecCCCcEEEEEEeCCCCEe-----------CC-CCEEEEEEec----------------------ceeEEEecCC
Confidence 777899999999999999999997 23 4333333311 1347899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|+|.++.|++||.|+.||+|++||
T Consensus 1119 ~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1119 DGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999986
No 113
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.89 E-value=1.9e-21 Score=228.84 Aligned_cols=270 Identities=15% Similarity=0.215 Sum_probs=192.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCc-cCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDK-FSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~-~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
+|..+| +..++.|++.|++.|++++++....+. .-....++|+.+.+.. ..+-.+.+...++++. ++ .++|.
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~----~~di~~~~~~~~l~~~-~~-iiIp~ 92 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDD----FSDILNEAVQEKLREM-NA-ILIPH 92 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcc----hhhhcCHHHHHHHhhc-Cc-EEEeC
Confidence 555555 234999999999999999999876542 2344567788887641 1112344445555555 22 25555
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
|...........+ .+++++.| +.++++...||..+|++|+++|||+|++ +.+.++ ++||+||||..
T Consensus 93 -gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~ 158 (358)
T PRK13278 93 -GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPG 158 (358)
T ss_pred -CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCC
Confidence 4444444444444 78888665 8889999999999999999999999985 345443 47999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEec---ccccEEEeeeeccc---cccc-
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD---KYGDVVHLYERDCS---MQRR- 290 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~D---g~G~vv~l~erd~s---~qr~- 290 (1427)
|.||+|+++|++.+|+.++++.+.+...... ...++|||||+ |.+++++++.. +.-+++.+-+|--+ ...+
T Consensus 159 g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~ 236 (358)
T PRK13278 159 AKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRI 236 (358)
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCC-CcEEEEEEEEeccCCeEEEEeeceeeeecccceeec
Confidence 9999999999999999999887654221111 47899999999 88999999974 33233333222211 0000
Q ss_pred ------------cceEEEEccCCCCCHHHHHHHHHHHHHHHHH----c--CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 291 ------------YQKVIQIAPAQDMSVSVRDAITETSVRLAKS----L--GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 291 ------------~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~a----l--g~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
..-.....|+ .+.+.+..++.+.+.+++++ + |..|++++|+++++++++|++|+|+|++|+
T Consensus 237 p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 237 PAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAG 315 (358)
T ss_pred cchhhhhcccCCceeEecceec-cchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCC
Confidence 1112233466 57788889999999999988 4 666999999999999999999999999764
No 114
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.89 E-value=1.8e-21 Score=227.17 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=199.2
Q ss_pred EEEEEcCC---HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 59 KILIANRS---EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 59 kVLIagrG---eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++|+.|. -.+.+++++++++|++++.++........... .+..+. .. -+..++|+|+
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~~-----------~~-------~~~~~~d~v~ 62 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIHY-----------KG-------RKLPHFDAVI 62 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEEE-----------CC-------cccCCCCEEE
Confidence 57777732 34678999999999999988644221111000 011111 00 0123689999
Q ss_pred eCCCcc-ccc-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEE
Q psy15244 136 PGYGFL-SER-EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVI 212 (1427)
Q Consensus 136 pg~gfl-sE~-~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvV 212 (1427)
+..+.. ... ...+..++..| +++++++.++..+.||..++++++++|||+|++. .+.+.+++.++++++ +||+|
T Consensus 63 ~~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~~P~V 139 (300)
T PRK10446 63 PRIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMVGGAPLV 139 (300)
T ss_pred EcCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHhCCCCEE
Confidence 864321 111 23467888999 5678999999999999999999999999999986 567888888888877 79999
Q ss_pred EeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeecc--CCceEEEEEEecccccEEEeeeeccccccc
Q psy15244 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID--RPRHIEVQILGDKYGDVVHLYERDCSMQRR 290 (1427)
Q Consensus 213 VKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIe--ggreieVqvl~Dg~G~vv~l~erd~s~qr~ 290 (1427)
|||..|+||+||+++++.+++..+++..... +..+++|+||+ .++++.|.++++ +++...+|..+-...
T Consensus 140 vKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g~d~rv~vig~---~~~~~~~r~~~~~~~ 210 (300)
T PRK10446 140 VKLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD---EVVAAIERRAKEGDF 210 (300)
T ss_pred EEECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCCceEEEEEECC---EEEEEEEEecCCCch
Confidence 9999999999999999999988887654321 36799999996 379999998753 566666654322110
Q ss_pred cceE---EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHH
Q psy15244 291 YQKV---IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQS 367 (1427)
Q Consensus 291 ~qk~---ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~ 367 (1427)
..+. ....|. .++ +++.+.|.++++++|+. .+.|||+++++| +||+|||++++. ..++.++|+|+.+.
T Consensus 211 ~~n~~~g~~~~~~-~l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~--~~~~~~~g~~~~~~ 281 (300)
T PRK10446 211 RSNLHRGGAASVA-SIT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGL--EGIEKTTGIDIAGK 281 (300)
T ss_pred hheeccCCeeccC-CCC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCCh--hhhHHHHCcCHHHH
Confidence 0111 111122 344 55788999999999997 889999999888 999999998864 45677899999999
Q ss_pred HHHHHcCC
Q psy15244 368 QIKIAQGK 375 (1427)
Q Consensus 368 ~i~iA~G~ 375 (1427)
.++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 98876443
No 115
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.89 E-value=1.5e-22 Score=217.99 Aligned_cols=177 Identities=24% Similarity=0.447 Sum_probs=132.0
Q ss_pred HhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHc
Q psy15244 168 TLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALAS 247 (1427)
Q Consensus 168 ~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~ 247 (1427)
++.||..++++++++|||+|++. .+.+.+++.++++.++||+||||..|+||+||+++++.+||..+++.......
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 47899999999999999999987 78999999999999999999999999999999999999999999988765432
Q ss_pred cCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccc--ccc---ceEEEEccCCCCCHHHHHHHHHHHHHHHHHc
Q psy15244 248 FGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ--RRY---QKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322 (1427)
Q Consensus 248 fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~q--r~~---qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al 322 (1427)
..+..+++|+||+ |.++++.++.+ +|.++.+...+.... .+. .......+. +....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIP-GDEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS---EPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE----SEEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeee-eeeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeeccc---ccccHHHHHHHHHHHHHHc
Confidence 1246899999999 79999999988 677765443222222 111 122222222 3334489999999999999
Q ss_pred CC-CCeEEEEEEEcCCCcEEEEeeCCCCCCch
Q psy15244 323 GY-SNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353 (1427)
Q Consensus 323 g~-~G~~~VEflvd~dG~~yfIEINpRl~ge~ 353 (1427)
|| .|++++||+++++|++||||||||++|.+
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99 79999999999999999999999999864
No 116
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.89 E-value=5.8e-21 Score=220.59 Aligned_cols=263 Identities=21% Similarity=0.307 Sum_probs=188.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFA 148 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a 148 (1427)
...++.+|+++|+++..++.... .+.+... . ..-.++|++++-...-.....++
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~~--~-------------~~~~~~d~v~~r~~~~~~~~~~~ 65 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPAL-----------PLPFGER--P-------------KELEDVDVAIIRCVSQSRALYSA 65 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhhe-----------EEEcCCC--c-------------cccCCCCEEEEcCcchhhHHHHH
Confidence 45789999999999988865432 1111100 0 01124777776421111223457
Q ss_pred HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEec
Q psy15244 149 KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228 (1427)
Q Consensus 149 ~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~ 228 (1427)
..++..|+++++ ++++++.+.||..++++++++|||+|++. .+.+.+++.++.+.+|||+|+||..|+||+|+++++
T Consensus 66 ~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~ 142 (280)
T TIGR02144 66 RLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIR 142 (280)
T ss_pred HHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence 788999999886 57999999999999999999999999986 567888888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeeccccccccce-EEEEccCCCCCHH
Q psy15244 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERDCSMQRRYQK-VIQIAPAQDMSVS 306 (1427)
Q Consensus 229 s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd~s~qr~~qk-~ie~aPa~~l~~e 306 (1427)
+.+++.++++.... .....+..+++|+||++ ++++++.++++ ..++...|...-.+.+.. .....|. .+++
T Consensus 143 ~~~~l~~~~~~~~~--~~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~-~~~~- 215 (280)
T TIGR02144 143 DKDELESLLEHKEV--LGGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPC-PLDE- 215 (280)
T ss_pred CHHHHHHHHHHHHh--hcCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceecc-CCCH-
Confidence 99999887753211 11112457999999986 58888887743 333322222111111111 1122343 2444
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 307 VRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 307 ~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
++.+.|.++++++|+ +.++|||+++++|++||+|||+|++-.. ++..+|+|+.+..++.+.
T Consensus 216 ---~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 216 ---EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred ---HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHH
Confidence 577889999999996 6889999999888899999999987542 456799999999998764
No 117
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.88 E-value=7.8e-23 Score=201.86 Aligned_cols=110 Identities=47% Similarity=0.803 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++++|++|+|+++|++++++++++|+.+.|.++||+.|.++ +....++|+|++.|++++++.++|++|
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~-~~~~~~~yl~~e~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEP-PGPSPESYLNIEAIIDIARKEGADAIH 79 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEE-SSSGGGTTTSHHHHHHHHHHTTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecC-cchhhhhhccHHHHhhHhhhhcCcccc
Confidence 5899999999999999999999999999999999999999999999999998 667889999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
|||||++|+++|++.|+++|+.|+||+++++
T Consensus 80 pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 80 PGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp STSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred cccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 9999999999999999999999999999875
No 118
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.86 E-value=4.9e-20 Score=213.19 Aligned_cols=294 Identities=16% Similarity=0.175 Sum_probs=211.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCcc--ccccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEE
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAH--RTKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAI 134 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~--~~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI 134 (1427)
+|..+| +..|+.|++-|++.|++|+++.......... +..+|+.+.++ +|.++ +.+.+-.++.+ +|
T Consensus 19 ~i~t~~-SHsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~-------~f~~~~~~~~~~~l~~~n--~i 88 (366)
T PRK13277 19 KIGVLA-SHSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLD-------KFKDILSEKVQDELREEN--AI 88 (366)
T ss_pred EEEEEe-cchHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEec-------chhhhhhHHHHHHHHHCC--eE
Confidence 566666 3469999999999999999997655332222 23689988864 34332 35555555543 45
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHh--CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTL--GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVI 212 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~--~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvV 212 (1427)
+--.|.+.+....-..-.+.-+|++|+. ..++.- +||..+.++|+++||++|+.+ .++ +++.+|||
T Consensus 89 ~iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~PVI 156 (366)
T PRK13277 89 FVPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRPVI 156 (366)
T ss_pred EecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCccEE
Confidence 4445766666544333335889999874 455554 788888889999999999965 333 36689999
Q ss_pred EeecCCCC--CcCeEEecCHHHHHHHHHHHHHHHHH-ccCCCcEEEEeeccCCceEEEEEEecc-cccEEEe--eeeccc
Q psy15244 213 LKAAFGGG--GRGMRMVANKDAIEENFKRAQSEALA-SFGKDDMLVEKYIDRPRHIEVQILGDK-YGDVVHL--YERDCS 286 (1427)
Q Consensus 213 VKP~~GgG--GrGV~iV~s~eeL~~a~~~a~~ea~~-~fg~~~vlVEeyIeggreieVqvl~Dg-~G~vv~l--~erd~s 286 (1427)
|||..|.| |+|++++.|.+|+....+.......- .-+..+++|||||. |.|+.++++.+. +|++..+ ..|.-+
T Consensus 157 VKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~id~R~es 235 (366)
T PRK13277 157 VKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLGIDRRIQS 235 (366)
T ss_pred EEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC-CCEEEEEEEEeccCCcEEEEEEeecccc
Confidence 99999999 99999999999998876554321000 00124567999999 899999999883 5654443 222111
Q ss_pred -----------------cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC------CCCeEEEEEEEcCCCcEEEE
Q psy15244 287 -----------------MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG------YSNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 287 -----------------~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg------~~G~~~VEflvd~dG~~yfI 343 (1427)
...++..++ ..|. .+.+.+.+++.+.+.+++++++ +.|++++|+++++++++|++
T Consensus 236 n~dg~~r~pa~~ql~~~~~p~~vv~G-~~p~-t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~ 313 (366)
T PRK13277 236 NLDGFVRLPAPQQLKLNEEPRYIEVG-HEPA-TIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVY 313 (366)
T ss_pred ccccccccChhhhhhcccCCceEEEc-Cccc-cchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEE
Confidence 011122222 3566 5777899999999999999976 67999999999999999999
Q ss_pred eeCCCCCCchhHHHHHhCCCHHHHHHH--HHcCCCCc
Q psy15244 344 EVNPRLQVEHTLSEEITGIDVVQSQIK--IAQGKSLT 378 (1427)
Q Consensus 344 EINpRl~ge~~vte~~tGiDLv~~~i~--iA~G~~l~ 378 (1427)
|||||++|+.++. +.+|.|...+.+. +.+|+++.
T Consensus 314 EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 314 DVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EEcCCcCCCccce-eecCCCcHHHHhcCccccCCcch
Confidence 9999999987665 3479999999999 89999875
No 119
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.85 E-value=5.2e-20 Score=244.48 Aligned_cols=563 Identities=19% Similarity=0.208 Sum_probs=307.8
Q ss_pred hheeeccceeEeecccccccchhhhhcccccccccccccccccc---ccccccCCCeEEeecCcccCCCCCCCcccC---
Q psy15244 606 VTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEF---VNSVRKLKHILLTDTTFRDAHQSLLATRVR--- 679 (1427)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~---~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~--- 679 (1427)
+.|++.++.++|+|||+||+|||+.++|.|+.|.+.+++--+.. ...|.....-. +|+-+|=-+.++| -|++
T Consensus 524 ~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggat-fd~~~r~l~e~p~-erl~~~r 601 (1146)
T PRK12999 524 ADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGAT-FDVAYRFLKEDPW-ERLAELR 601 (1146)
T ss_pred HHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcc-hhhhccccCCCHH-HHHHHHH
Confidence 36899999999999999999999999999999999986522221 00011111111 1444444433332 1111
Q ss_pred -----------------------HHHHHH-HHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 680 -----------------------TYDLKK-VSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 680 -----------------------t~d~l~-ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
.++..+ ..+...+ .|++.+=+.-+ -+..+.++..-+.+.+.-.
T Consensus 602 ~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~--~Gid~~rifd~-----------lnd~~~~~~~i~~vk~~g~ 668 (1146)
T PRK12999 602 EAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAA--AGIDVFRIFDS-----------LNWVENMRVAIDAVRETGK 668 (1146)
T ss_pred HhCCCCeEEEEecccccccccCCCchHHHHHHHHHHH--cCCCEEEEecc-----------CChHHHHHHHHHHHHHcCC
Confidence 112222 1333334 57776655321 1223334333333332221
Q ss_pred eeeeccccccccc---------CCCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh-cCCCcEEEEEE
Q psy15244 736 QMILRGNSLVGYS---------NYSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV-TGGSTIVEATI 803 (1427)
Q Consensus 736 qml~Rg~n~vgy~---------~~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~-G~~~~~v~~~i 803 (1427)
.+. -.++|+ .|..+..-++++.+.+.|+|+++|-|..-- -..+...+..+|+. +. .+..
T Consensus 669 --~~~--~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~i---pi~~-- 739 (1146)
T PRK12999 669 --IAE--AAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDL---PIHL-- 739 (1146)
T ss_pred --eEE--EEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCC---eEEE--
Confidence 111 123444 245556667788889999999999998874 35667777777754 23 2222
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
-.| .|.-.-..-+-++.++|||+|-.+ =+.|..---.+..++.+|+.. +...++... .=..+++
T Consensus 740 --H~H--------nt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~--~~~t~idl~--~l~~~s~ 805 (1146)
T PRK12999 740 --HTH--------DTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGT--ERDTGLDLD--AIRKLSP 805 (1146)
T ss_pred --EeC--------CCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhc--CCCCCcCHH--HHHHHHH
Confidence 111 112223333445667899976433 334443335577888888732 222111111 1123344
Q ss_pred HHHHHH-------hcCCEEEeccc--cC-CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCC--CCCC
Q psy15244 882 TLACVK-------AGADIVDVAAD--SM-SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYA--PAHN 949 (1427)
Q Consensus 882 ~laAi~-------AGad~VD~av~--Gm-G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~--~~~k 949 (1427)
+++.++ .|....|+.+. -| ||..+ .+..-|+..|... .++.+.+--..+.+.+|.++ -|..
T Consensus 806 ~~~~~r~~y~~~~~~~~~~~~~v~~~~~PGG~~s-----nl~~q~~~~g~~~--~~~~v~~~~~~v~~~~G~~~~VTP~S 878 (1146)
T PRK12999 806 YWEAVRPYYAPFESGLKSPTTEVYLHEMPGGQYS-----NLKQQARALGLGD--RFEEVKEMYAAVNRMFGDIVKVTPSS 878 (1146)
T ss_pred HHHHHHhHhhccCCCCCCCCcCeEEecCCCcccc-----hHHHHHHHCChHh--HHHHHHHHHHHHHHHcCCCceeCccc
Confidence 444443 33333332221 11 12222 2555566665433 34455555666677777764 4445
Q ss_pred cccccchhhhhHHHH--HHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q psy15244 950 LLWRCGIDLHDVCDY--SSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFL 1027 (1427)
Q Consensus 950 pivG~~~f~~~~~~~--~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~ 1027 (1427)
-+||.-++-.-.... .+.+. ....| .|. .+++.. -.=++|+-|||.- +++.+.+
T Consensus 879 q~vg~~A~~~v~~~~~~~~~~~-~~~~~-~~~-~~v~~~-~~G~~G~~~~~~~--------------~~~~~~~------ 934 (1146)
T PRK12999 879 KVVGDMALFMVQNGLTPEDVYE-PGEDL-DFP-DSVVSF-LKGELGQPPGGFP--------------EPLQKKV------ 934 (1146)
T ss_pred hhhHHHHHHHHhhccchhhhhc-cCcee-eCC-HHHHHH-hCcCCCCCCCCCC--------------HHHHHHH------
Confidence 566665532111100 00000 01112 121 111000 0002344444431 1111110
Q ss_pred cCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCC
Q psy15244 1028 LGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKA 1107 (1427)
Q Consensus 1028 lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~ 1107 (1427)
|+..--+| .++.+.. +|..| +.+++.+.+. ..++
T Consensus 935 l~~~~~~~-----------------~rp~~~~----------------------~~~d~-~~~~~~~~~~----~~~~-- 968 (1146)
T PRK12999 935 LKGEEPIT-----------------VRPGELL----------------------EPVDF-EAERAELEEK----LGRE-- 968 (1146)
T ss_pred hCCCCCCc-----------------CChhhhC----------------------CcccH-HHHHHHHHHH----hcCC--
Confidence 11000000 0010000 01111 1233322110 0111
Q ss_pred CCCccccccccCCCccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcC
Q psy15244 1108 EFDPIMACDYREDEPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIF 1186 (1427)
Q Consensus 1108 ~~~~~~~~~~~e~~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1186 (1427)
..+.| ++++|||+|..+|.+.+++||+++.|||+.||.|++.||++. +..
T Consensus 969 ------------~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~-~~~---------------- 1019 (1146)
T PRK12999 969 ------------VTDRDVLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIE-VEI---------------- 1019 (1146)
T ss_pred ------------CCHHHHHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEE-eec----------------
Confidence 22234 778899999999999999999999999999999999999986 322
Q ss_pred chhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccc
Q psy15244 1187 PKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQ 1266 (1427)
Q Consensus 1187 p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~ 1266 (1427)
++|+++.+.+. .+. ..+..+.|++||++||+.+.+.+.+.
T Consensus 1020 -----------------------------~~gk~~~i~~~-----~~~------~~~~~g~~~~~~~vnG~~~~V~v~d~ 1059 (1146)
T PRK12999 1020 -----------------------------EPGKTLIIKLE-----AIG------EPDEDGMRTVYFELNGQPREVQVRDR 1059 (1146)
T ss_pred -----------------------------CCCceeEEEee-----ccc------CcccCCcEEEEEEECCEEEEEEEecC
Confidence 34788888553 343 34556899999999999999999987
Q ss_pred cccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhh
Q psy15244 1267 QILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKL 1346 (1427)
Q Consensus 1267 ~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~ 1346 (1427)
..-.. ....++...+....|.++|.|+..+|.++.|+.+ .. |..-+.++
T Consensus 1060 ~~~~~---~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V-----------~~-G~~L~~le---------------- 1108 (1146)
T PRK12999 1060 SVKST---VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEV-----------KA-GDPLAVIE---------------- 1108 (1146)
T ss_pred ccccc---cccccccCCCCCceEeCCceEEEEEEEcCCCCEE-----------CC-CCEEEEEE----------------
Confidence 53221 1223444456678899999999999999999997 23 33222222
Q ss_pred hccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1347 KLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1347 ~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
+. .....|.||.+|+|.++.|++|+.|+.||.|++||
T Consensus 1109 -----am-Kme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1109 -----AM-KMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred -----cc-ccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 00 13578999999999999999999999999999987
No 120
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.84 E-value=5.9e-20 Score=195.64 Aligned_cols=167 Identities=23% Similarity=0.400 Sum_probs=140.7
Q ss_pred HHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe-ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEe
Q psy15244 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK-AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEK 257 (1427)
Q Consensus 179 a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK-P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEe 257 (1427)
|+++|||+|||. .+.+.+++.++++++|||+|+| +..|..|+|..++++.+|+..+++.. +..++++|+
T Consensus 1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 578999999997 7999999999999999999999 55666999999999999999988754 468999999
Q ss_pred eccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC
Q psy15244 258 YIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337 (1427)
Q Consensus 258 yIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d 337 (1427)
||+..+|+++.+.++.+|++.. ++--..+++++.....++|+ .++++..+++.+.|.+++++|+|.|++.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~-yp~~en~~~~~il~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRF-YPPVENVHRDGILHESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEE-EEEEEEEEETTEEEEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEE-EcCceEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 9999999999999999998665 44445778888888889999 599999999999999999999999999999999999
Q ss_pred Cc-EEEEeeCCCCCCchhHHH
Q psy15244 338 DN-FYFIEVNPRLQVEHTLSE 357 (1427)
Q Consensus 338 G~-~yfIEINpRl~ge~~vte 357 (1427)
|+ +||.||.||++.+.++|.
T Consensus 149 g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp STEEEEEEEESS--GGGGGHH
T ss_pred CCEEEEEeccCCccCcccEee
Confidence 98 999999999998755553
No 121
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.83 E-value=2.2e-20 Score=233.14 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=187.6
Q ss_pred HHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEEEeCCCcccccHHH-----
Q psy15244 75 ACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAIHPGYGFLSEREDF----- 147 (1427)
Q Consensus 75 aa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI~pg~gflsE~~~~----- 147 (1427)
-.+++|++.+.+|+..|..+. |+++++++ .+.. + +++ +.|++.|++.++++++.. +|+..|
T Consensus 206 fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~-~~~~-~-l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g 273 (547)
T TIGR03103 206 LYEKLGFRRIPVFALKRKNAI-----NERLFSGP-APEA-D-LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLG 273 (547)
T ss_pred HHHHCCCEEeeEEEEeccCCc-----CcccccCC-Cccc-c-cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCC
Confidence 345678888888887776555 88899873 2222 2 677 899999999999999955 232212
Q ss_pred --HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeE
Q psy15244 148 --AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 148 --a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~ 225 (1427)
+..|... +. .-+++.++..++||..++++++++|||+|++. .+.+.+++.++++++| |+||||..|++|+||+
T Consensus 274 ~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~ 348 (547)
T TIGR03103 274 GRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGIS 348 (547)
T ss_pred ceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeE
Confidence 1112111 11 12689999999999999999999999999987 5788999999999998 6999999999999999
Q ss_pred E-ecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceE----------------EEEEEecccccEEEeeeeccccc
Q psy15244 226 M-VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI----------------EVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 226 i-V~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggrei----------------eVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
+ +++.++|.++++.+.+. ...+|+|+||+ |+++ ..++++||++++.+|+++.....
T Consensus 349 v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~-G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~ 421 (547)
T TIGR03103 349 VDVRTPDDLEAAIAKARQF------CDRVLLERYVP-GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRR 421 (547)
T ss_pred EecCCHHHHHHHHHHHHhc------CCcEEEEEecc-CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCc
Confidence 7 99999999999887643 35899999999 5444 55777888888777766542211
Q ss_pred cc-------------------------------cceEE--------EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q psy15244 289 RR-------------------------------YQKVI--------QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT 329 (1427)
Q Consensus 289 r~-------------------------------~qk~i--------e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~ 329 (1427)
.+ .+.+. ....+..+++++.+++.+.|+++++++|+. .+.
T Consensus 422 ~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~G 500 (547)
T TIGR03103 422 AAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVG 500 (547)
T ss_pred cCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEE
Confidence 11 01110 001111346678889999999999999996 778
Q ss_pred EEEEEcC-C-CcEEEEeeCCCCCCc
Q psy15244 330 VEFLLDK-D-DNFYFIEVNPRLQVE 352 (1427)
Q Consensus 330 VEflvd~-d-G~~yfIEINpRl~ge 352 (1427)
||+++++ + ..++|||+|.|++-.
T Consensus 501 vD~i~~~~~~p~~~iiEvN~~Pgl~ 525 (547)
T TIGR03103 501 IDFLVPDVTGPDYVIIEANERPGLA 525 (547)
T ss_pred EEEEeccCCCCCeEEEEecCCcccc
Confidence 9999875 2 236999999999954
No 122
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.81 E-value=1.4e-19 Score=232.69 Aligned_cols=256 Identities=22% Similarity=0.322 Sum_probs=188.8
Q ss_pred CCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE--------EEeCCCcccccHHHHHHHHHCCCceeC
Q psy15244 89 EQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA--------IHPGYGFLSEREDFAKAVIGAGLEFIG 160 (1427)
Q Consensus 89 ~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa--------I~pg~gflsE~~~~a~~~e~~Gi~fiG 160 (1427)
+.|....+.+.+++.+.+++ +...|++.|++.++++ ++||||+.++ .++..+.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~lgp---------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~ 203 (727)
T PRK14016 141 DLEAALARLRELDEDERLGP---------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--Q 203 (727)
T ss_pred CHHHHHHHHHHHHHhcccCC---------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--C
Confidence 44555777888889988871 2469999999999988 9999999775 34444443 8
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEE-ecCHHHHHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM-VANKDAIEENFKR 239 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~i-V~s~eeL~~a~~~ 239 (1427)
++..+++.++||..++++|+++|||+|++. .+.+.+++.++++++|||+||||..|++|+||++ +++.+|+.++++.
T Consensus 204 ~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~ 281 (727)
T PRK14016 204 TSAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAV 281 (727)
T ss_pred CcHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999997 7899999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHccCCCcEEEEeeccCCceEEEE----------------EEecccccEEEeeeeccccccc-------------
Q psy15244 240 AQSEALASFGKDDMLVEKYIDRPRHIEVQ----------------ILGDKYGDVVHLYERDCSMQRR------------- 290 (1427)
Q Consensus 240 a~~ea~~~fg~~~vlVEeyIeggreieVq----------------vl~Dg~G~vv~l~erd~s~qr~------------- 290 (1427)
+... +..++||+||+ |+++.+. +++||++++.+|.++...-.||
T Consensus 282 a~~~------~~~viVEe~I~-G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~ 354 (727)
T PRK14016 282 ASKE------SSDVIVERYIP-GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKL 354 (727)
T ss_pred HHHh------CCeEEEEEecC-CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCC
Confidence 7653 36899999999 5555554 4444444444444331111111
Q ss_pred ---------------------cceEEEEc--------cCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-----
Q psy15244 291 ---------------------YQKVIQIA--------PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK----- 336 (1427)
Q Consensus 291 ---------------------~qk~ie~a--------Pa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~----- 336 (1427)
.+++.-.. -+...++++.+++.+.|.++++.+|+. .+.||++.++
T Consensus 355 d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-~~GvDi~~~di~~p~ 433 (727)
T PRK14016 355 DDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGLD-IAGVDVVCEDISKPL 433 (727)
T ss_pred CHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCccccc
Confidence 11111000 011235567788899999999999994 7889998863
Q ss_pred -CCcEEEEeeCCCCCCch-hHHHHHhCCCHHHHHHHH
Q psy15244 337 -DDNFYFIEVNPRLQVEH-TLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 337 -dG~~yfIEINpRl~ge~-~vte~~tGiDLv~~~i~i 371 (1427)
.....+||||..++-.. .......+.|.....+..
T Consensus 434 ~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 434 EEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred ccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 12379999999998542 212223456666666554
No 123
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.81 E-value=6.1e-19 Score=193.87 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=136.2
Q ss_pred HHHhCCCCCCCCccccCCCHHH--HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEE
Q psy15244 178 AALKADVPIIPGTTEPVTDVDK--VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255 (1427)
Q Consensus 178 ~a~~aGVpvp~~~~~~v~s~ee--a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlV 255 (1427)
+++++|||+|++....-.+... ..+....++||+||||..+|+|.|+.+|++.+||..+++.+.+. +..++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceEEE
Confidence 4789999999997322222222 34567889999999999999999999999999999999886532 468999
Q ss_pred EeeccCCceEEEEEEecccccEEEeeeeccc-----cccc----cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q psy15244 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCS-----MQRR----YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSN 326 (1427)
Q Consensus 256 EeyIeggreieVqvl~Dg~G~vv~l~erd~s-----~qr~----~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G 326 (1427)
|+||+ |+|++|.+++++...+....+.... .... ........|+ .+++++.++|.+.|.++.++||.+|
T Consensus 75 EefI~-G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa-~l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFIS-GREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPA-DLSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--S-SEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS--SS-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeec-ccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997 9999999999877555554433211 1111 2455667787 6999999999999999999999999
Q ss_pred eEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 327 AGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 327 ~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
.+.+||+++++|++||+|+|+-++-+ .+..-...|+++.+..-++
T Consensus 153 ~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999988832 2333344777776665543
No 124
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=6.2e-18 Score=196.60 Aligned_cols=269 Identities=20% Similarity=0.290 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDF 147 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~ 147 (1427)
+..++++++..|+.+.-++...+.. ...++... . ..-.++|.++|. .|+..|+-.+
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~-----~~~~~~~vvfp~lhG~~gEDg~i 79 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGL----WMLDKEVT--------------K-----RVLQKADVVFPVLHGPYGEDGTI 79 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccce----EEeccccc--------------h-----hhcccCCEEEEeCCCCCCCCchH
Confidence 5568999999999988887665421 01111100 0 222457788887 7888899899
Q ss_pred HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC--CHHHHHHHHHhcCCcEEEeecCCCCCcCeE
Q psy15244 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT--DVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 148 a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~--s~eea~~~a~~iGyPvVVKP~~GgGGrGV~ 225 (1427)
...++..|+|++|++..+...+.||..+|.+++..|+|++++...... +...+.++.+..+||++|||...+++.|+.
T Consensus 80 qg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 80 QGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRS 159 (317)
T ss_pred HHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCccceeeEE
Confidence 999999999999999999999999999999999999999998621111 223345677789999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE------------eeeeccccccccce
Q psy15244 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH------------LYERDCSMQRRYQK 293 (1427)
Q Consensus 226 iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~------------l~erd~s~qr~~qk 293 (1427)
.+++.+|+..+++.+... +.++++|+|+. ++|++|.++.+.. .... ++.++.+.... ..
T Consensus 160 ~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~-gg 230 (317)
T COG1181 160 PVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLST-GG 230 (317)
T ss_pred EeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc-cceecCceEEecCCCeEEeeeccccCC-CC
Confidence 999999999987776654 78999999999 9999999998744 2221 12222222221 11
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCC-Cc---hhHHHHHhCCCHHHHH
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQ-VE---HTLSEEITGIDVVQSQ 368 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~-ge---~~vte~~tGiDLv~~~ 368 (1427)
.....|+ .++++..+++.+.|.++.+++|..|.+.+||++++ +|++|++|+|+.+| -. .|..-...|++.....
T Consensus 231 ~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~ 309 (317)
T COG1181 231 AQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILV 309 (317)
T ss_pred ceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHH
Confidence 3446677 59999999999999999999999999999999998 78899999999999 32 2333334566655544
Q ss_pred HH
Q psy15244 369 IK 370 (1427)
Q Consensus 369 i~ 370 (1427)
..
T Consensus 310 ~~ 311 (317)
T COG1181 310 LR 311 (317)
T ss_pred HH
Confidence 43
No 125
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.78 E-value=1.7e-18 Score=186.07 Aligned_cols=174 Identities=19% Similarity=0.297 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE-EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV-ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv-VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
++|..+|++|+++|||++++. .++|.+++.+++++.++|+ ||||..-++|+||.++.+.+|..+++++.... ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~--~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYK--VFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EE--EESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 379999999999999999987 7999999999999999999 99999999999999999999999999988753 356
Q ss_pred C--CCcEEEEeeccCCceEEEEEEecccccEEEe-eeecccc------ccccceEEEEccCCCCCHHHHHHHHH-HHHHH
Q psy15244 249 G--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERDCSM------QRRYQKVIQIAPAQDMSVSVRDAITE-TSVRL 318 (1427)
Q Consensus 249 g--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd~s~------qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~l 318 (1427)
| +..++||||++ |.|+|+.++.|+.. ++.+ ..+|... ..+...++.++|.+.++++..+++.+ .....
T Consensus 77 g~~~~~vvIEE~l~-G~E~S~~a~~dG~~-~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt 154 (194)
T PF01071_consen 77 GDAGSKVVIEEFLE-GEEVSLFALTDGKN-FVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPT 154 (194)
T ss_dssp CCCGSSEEEEE----SEEEEEEEEEESSE-EEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHH
T ss_pred CCCCCcEEEEeccC-CeEEEEEEEEcCCe-EEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHH
Confidence 5 57999999999 99999999999864 4433 2333221 22335678899999899988877776 45555
Q ss_pred HHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCC
Q psy15244 319 AKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 319 ~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ 350 (1427)
+++| .|+|+..+.++++++| +++||.|.|++
T Consensus 155 ~~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 155 LKGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 5544 7889999999999888 99999999997
No 126
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.76 E-value=5.7e-16 Score=192.17 Aligned_cols=171 Identities=17% Similarity=0.246 Sum_probs=125.2
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++ ++.|||+.||.+++.|+... ++
T Consensus 425 l~y~l~p~v~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~----~e-------------------------------- 465 (596)
T PRK14042 425 LLYAMFPEIGRQFLEQRKN---NQLIPEPLLTQSSAPDNSVM----SE-------------------------------- 465 (596)
T ss_pred HHHHhCcHHHHHHHHHHhc---cccCCccccccccccCCCCc----eE--------------------------------
Confidence 7788999999999999877 56899999999987666321 01
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
..+ . ..|+++.|.+.. +. . ...+.|+|||++||+.+.+++.+...-. .....+++..+
T Consensus 466 ---~~v--~--~~Gk~~~Ikl~~-----~g------~-~~~G~r~v~fevng~~r~v~v~d~~~~~---~~~~~~~a~~~ 523 (596)
T PRK14042 466 ---FDI--I--LHGESYHVKVAG-----YG------M-IEHGQQSCFLWVDGVPEEVVVQHSELHD---KIERSSVNNKI 523 (596)
T ss_pred ---EEE--E--ECCEEEEEEEec-----cc------c-ccCCceEEEEEEcCccceeecccccccc---cccccccCCCC
Confidence 000 0 239999998862 22 1 2369999999999999999998764211 11122333344
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
..-.|.++|.|...+|.+++||.+ .. |..-+.+|-. . ....|.||.
T Consensus 524 ~~~~v~apm~G~V~~~~V~~Gd~V-----------~~-Gq~L~~iEam---------------------K-me~eV~AP~ 569 (596)
T PRK14042 524 GPGDITVAIPGSIIAIHVSAGDEV-----------KA-GQAVLVIEAM---------------------K-METEIKAPA 569 (596)
T ss_pred CCCeEecCcceEEEEEEeCCCCEe-----------CC-CCEEEEEEec---------------------c-eeeEEecCC
Confidence 455799999999999999999997 23 4333333311 1 346899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.|+|.+++|++||.|+.||+|+.||.
T Consensus 570 ~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 570 NGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 99999999999999999999999974
No 127
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.72 E-value=8.4e-18 Score=173.41 Aligned_cols=71 Identities=38% Similarity=0.582 Sum_probs=69.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+...|.|||+|++++++|++||+|++||+||+|||||||++|.||.+|+|++|+|++||.|+.||+|+.|+
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999986
No 128
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.71 E-value=2.5e-17 Score=174.98 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=90.2
Q ss_pred hCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 169 ~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
|.||.++.+.++++|||+|... ..... ....+|+|+||.+|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 6799999999999999999322 11111 12378999999999999999999999988765542
Q ss_pred CCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc--ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCC
Q psy15244 249 GKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM--QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYS 325 (1427)
Q Consensus 249 g~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~--qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~ 325 (1427)
..++|+||+ |.++++.++.++.+..+..+.|...- ..++...+...|.. .....++.+.+.++++++ |+.
T Consensus 63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 63 ---LRIVQEFIE-GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp -----EEEE----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--
T ss_pred ---ceEEeeeeC-CEEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCCe
Confidence 239999999 99999999998754433322222111 11234556666762 334789999999999999 999
Q ss_pred CeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 326 NAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 326 G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
|...|||++++ +++|+||||||++++
T Consensus 136 G~~giD~I~~~-~~~~viEINPR~t~S 161 (161)
T PF02655_consen 136 GYVGIDFILDD-GGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEEEEEEESS--SEEEEEEESS--GG
T ss_pred eeEeEEEEEeC-CcEEEEEEcCCCCCC
Confidence 99999999987 669999999999863
No 129
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.71 E-value=1.1e-14 Score=182.24 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=127.4
Q ss_pred cccccChhhHHHHHhHhhhcCCCC--CCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVD--KLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGP 1202 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~--~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1202 (1427)
+.++|||+|..+|.+.+++||+++ .+||+.||.+++.++|+. +.
T Consensus 426 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~--------------------------------- 471 (592)
T PRK09282 426 LTYALFPQIAKKFLEEREAGELKPEPEPKEAAAAGAEGIPTEFK-VE--------------------------------- 471 (592)
T ss_pred HHHHhCcHHHHHHHHHHhccCCcccccCCccccccCCCCCeEEE-EE---------------------------------
Confidence 778899999999999999999998 999999999999888875 21
Q ss_pred CCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcc
Q psy15244 1203 VDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRL 1282 (1427)
Q Consensus 1203 ~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 1282 (1427)
++ |+++.|.+. .+. ..+ .|++||++||+.+.+++.+...-.... +..
T Consensus 472 ------------i~-Gk~~~i~~~-----~~g------~~~---~r~~~~~~ng~~~~v~v~d~~~~~~~~------~~~ 518 (592)
T PRK09282 472 ------------VD-GEKYEVKIE-----GVK------AEG---KRPFYLRVDGMPEEVVVEPLKEIVVGG------RPR 518 (592)
T ss_pred ------------EC-CEEEEEEEe-----ecc------CCC---cceEEEEecCceeeeeccCcccccccc------cCC
Confidence 12 888999775 222 111 799999999999999998874322110 233
Q ss_pred cccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceec
Q psy15244 1283 KSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGA 1362 (1427)
Q Consensus 1283 ~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~A 1362 (1427)
.+....|.+++.|+..+|.+++|+.+ .. |..-..++.. .....|.|
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V-----------~~-Gq~L~~ieam----------------------Kme~~V~A 564 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKV-----------KA-GDTVLVLEAM----------------------KMENEIQA 564 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEE-----------CC-CCEEEEEecc----------------------ccceEEEc
Confidence 45667899999999999999999997 22 3322222211 12467999
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.+|+|.++.|++||.|..||+|+.|+
T Consensus 565 p~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 565 PVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 999999999999999999999999986
No 130
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=7e-16 Score=179.97 Aligned_cols=284 Identities=23% Similarity=0.306 Sum_probs=186.9
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc-HH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER-ED 146 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~-~~ 146 (1427)
..+..+++++.|++...++...-........+-.. ..+.. .....| ....-.........|++++-.+..... ..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 19 TFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE--VIGLHY-ELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred HHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh--cccccc-ccccccccchhccCCEEEEecCCchhhHHH
Confidence 56788999999999776654432211111111000 00000 000000 000111122334678898875533233 46
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHH-hcCCcEEEeecCCCCCcCeE
Q psy15244 147 FAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCD-EVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 147 ~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~-~iGyPvVVKP~~GgGGrGV~ 225 (1427)
+++.+|..|.+++ ++++++..|+||..+-+++.++|+|+|++. ...+.+++..+++ ..|||+|+||.+|++|+||.
T Consensus 96 ~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence 7889999999877 899999999999999999999999999986 6777766666655 55899999999999999999
Q ss_pred EecCHH-HHHHHHHHHHHHHHHccCCCcEEEEeeccCCc-eEEEEEEecccccEEEee--eecc--ccccccceEEEEcc
Q psy15244 226 MVANKD-AIEENFKRAQSEALASFGKDDMLVEKYIDRPR-HIEVQILGDKYGDVVHLY--ERDC--SMQRRYQKVIQIAP 299 (1427)
Q Consensus 226 iV~s~e-eL~~a~~~a~~ea~~~fg~~~vlVEeyIeggr-eieVqvl~Dg~G~vv~l~--erd~--s~qr~~qk~ie~aP 299 (1427)
+|++.+ ++.+.++..... +...+|+|+||+.+. .+-.-+++| +.++..+ .|-+ .--|.+...+..+.
T Consensus 173 ~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 173 LVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred EecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeecccccccc
Confidence 999999 888877665432 234699999999775 444545555 3555543 2211 01111111222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
...++ +++.+.|.+++++||. +...||++.+.+| +|++|||..+.+-+. ++..+|+|....+++..
T Consensus 246 ~~~l~----~e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCELT----EEEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccCCC----HHHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 22455 5677899999999987 5788999999777 999999996655443 45568898888777654
No 131
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.69 E-value=5.3e-16 Score=169.45 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=201.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE--EEe
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA--IHP 136 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa--I~p 136 (1427)
-|+|+|+....+.++|++.+.-+.+.++..+. .....++++.+....+.+. +-..++.+.++|.+++-.. +++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~-plPt~Sr~vr~t~~w~gph----d~gaiafLrd~Aekhglkg~LLva 79 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADG-PLPTYSRIVRVTTHWNGPH----DEGAIAFLRDFAEKHGLKGYLLVA 79 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCC-CCcchhhhheeeeccCCCC----cccHHHHHHHHHhhcCcCceEEEe
Confidence 57899988778889999999998877764433 3344677777766654111 1234788999999987542 233
Q ss_pred -CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 -GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 -g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|-|..--.....+.+.+. ..++-|+...++.+.+|-.+.+.|.+.|+|+|..+ .++|..+ ..+.++.||+|+||
T Consensus 80 ~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v~S~~d--~~~~el~FPvILKP 154 (415)
T COG3919 80 CGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LVNSEID--TLVDELTFPVILKP 154 (415)
T ss_pred cCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Eecchhh--hhhhheeeeEEecC
Confidence 333211111222222221 23346899999999999999999999999999987 5676544 45678999999999
Q ss_pred cCCCC-----CcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCce--EEEEEEecccccEEEeeeeccccc
Q psy15244 216 AFGGG-----GRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRH--IEVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 216 ~~GgG-----GrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggre--ieVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
-.|+| -.....+.+.+|+..++.++..+ .|.++++||+||+||.| ++...+.|+ |+.+.. |.-.
T Consensus 155 ~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~-g~pvae----ftar 225 (415)
T COG3919 155 GMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDK-GHPVAE----FTAR 225 (415)
T ss_pred CCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhC-CCchhh----hhcc
Confidence 98884 34556778899999999888765 46789999999998865 444455665 444432 3322
Q ss_pred cccceEEEE---ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCH
Q psy15244 289 RRYQKVIQI---APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDV 364 (1427)
Q Consensus 289 r~~qk~ie~---aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDL 364 (1427)
|-.|.-... +-...+.+ .+++.++++++++.+++.|...|||++|+ ||.+.++|||||++....+.. +.|+||
T Consensus 226 r~rqyPvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~t-aaG~nL 302 (415)
T COG3919 226 RLRQYPVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVT-AAGYNL 302 (415)
T ss_pred hhhcCCcccccccEEEEecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEEe-cccccc
Confidence 222211000 00001112 37889999999999999999999999997 899999999999987543332 367777
Q ss_pred HHHHHHHHcCC
Q psy15244 365 VQSQIKIAQGK 375 (1427)
Q Consensus 365 v~~~i~iA~G~ 375 (1427)
-....+...+.
T Consensus 303 g~~Lwa~~~~~ 313 (415)
T COG3919 303 GRYLWADRINN 313 (415)
T ss_pred cceEEeeecCC
Confidence 66555544443
No 132
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.67 E-value=4.8e-16 Score=169.67 Aligned_cols=182 Identities=27% Similarity=0.497 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
.||..+.++|+++|||+|++. .+.+.+++.++++++ ++|+|+||..|++|+||.++++.+++...++.....
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~----- 74 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL----- 74 (190)
T ss_dssp HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH----------
T ss_pred CCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc-----
Confidence 599999999999999999986 678999999999999 899999999999999999999999999887754321
Q ss_pred CCCcEEEEeeccCC--ceEEEEEEecccccEEEeeeeccc---cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy15244 249 GKDDMLVEKYIDRP--RHIEVQILGDKYGDVVHLYERDCS---MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG 323 (1427)
Q Consensus 249 g~~~vlVEeyIegg--reieVqvl~Dg~G~vv~l~erd~s---~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg 323 (1427)
+..+++|+||+.. +++.|.++++ +++..+.|.-. ...+...-....|. .++ +++.+.|.++++++|
T Consensus 75 -~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~~~g~~~~~~-~l~----~e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 75 -ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNLSRGGKVEPY-DLP----EEIKELALKAARALG 145 (190)
T ss_dssp -TTT-EEEE----SS---EEEEEETT---EEEEEEE------------------EE---------HHHHHHHHHHHHHTT
T ss_pred -cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhhccCceEEEe-cCC----HHHHHHHHHHHHHhC
Confidence 4688999999965 4899888865 46655544311 11111111112233 234 567888999999999
Q ss_pred CCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 324 YSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 324 ~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
+. .+.||++.++ +++||+|+|+.++ ...++..+|+|+.+..+..
T Consensus 146 l~-~~giDi~~~~-~~~~v~EvN~~~~--~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 146 LD-FAGIDILDTN-DGPYVLEVNPNPG--FRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp -S-EEEEEEEEET-TEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CC-EEEEEEEecC-CCeEEEEecCCch--HhHHHHHHCcCHHHHHHhh
Confidence 85 7889966554 5699999999887 4467788999999987753
No 133
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.61 E-value=4.8e-15 Score=149.61 Aligned_cols=70 Identities=39% Similarity=0.586 Sum_probs=68.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.||.|+.|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 5677999999999999999999999999999999999999999999999999999999999999999987
No 134
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.61 E-value=5.9e-15 Score=153.51 Aligned_cols=70 Identities=40% Similarity=0.617 Sum_probs=68.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++.|+.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 5678999999999999999999999999999999999999999999999999999999999999999987
No 135
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.59 E-value=5.3e-15 Score=135.28 Aligned_cols=69 Identities=30% Similarity=0.530 Sum_probs=66.8
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999999999885
No 136
>PRK12458 glutathione synthetase; Provisional
Probab=99.59 E-value=3.4e-13 Score=159.74 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCC-CcccCCCCHHHHHHHH-------HhcCCCEEEe
Q psy15244 65 RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGM-PPVAAYLNIPEIICIA-------KNNNVDAIHP 136 (1427)
Q Consensus 65 rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~-~~~~~yldi~~Ii~ia-------~~~~vDaI~p 136 (1427)
..-...+++.+|+++|+++..+....-........|.-...+..+. .....+ ....+.. .-..+|+|++
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~V~~ 85 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENF---LSFLKKAEFKKERLPLAGFDVIFL 85 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccch---hhHhhccccccccCchhhCCEEEE
Confidence 3445788999999999998877544322111122222222221100 000000 0111111 1134899998
Q ss_pred C--CCcccccHHHH--------HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh
Q psy15244 137 G--YGFLSEREDFA--------KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE 206 (1427)
Q Consensus 137 g--~gflsE~~~~a--------~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~ 206 (1427)
- +.+..+...++ ..++..|++++ +++++++.+.||..+.++++ +++|++. ...+.+++.+++++
T Consensus 86 R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~ 159 (338)
T PRK12458 86 RANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEE 159 (338)
T ss_pred eCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHH
Confidence 5 33322222222 23356788766 99999999999999977665 6777765 56788899999999
Q ss_pred cCCc-EEEeecCCCCCcCeEEecCHHH--HHHHHHHHHHHHHHccCCCcEEEEeeccCC--ceEEEEEEecccccEE---
Q psy15244 207 VEFP-VILKAAFGGGGRGMRMVANKDA--IEENFKRAQSEALASFGKDDMLVEKYIDRP--RHIEVQILGDKYGDVV--- 278 (1427)
Q Consensus 207 iGyP-vVVKP~~GgGGrGV~iV~s~ee--L~~a~~~a~~ea~~~fg~~~vlVEeyIegg--reieVqvl~Dg~G~vv--- 278 (1427)
+++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++. .++.+.++. |+++
T Consensus 160 ~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv~---g~~v~~~ 229 (338)
T PRK12458 160 SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLLN---GEPLERD 229 (338)
T ss_pred cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEEC---CEEEeec
Confidence 9775 9999999999999999987664 4444443211 3589999999954 445555432 4566
Q ss_pred ---Eeeeecccc--ccccceE-EEEccCCCCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEEEcCCCcEEEEeeCCCC
Q psy15244 279 ---HLYERDCSM--QRRYQKV-IQIAPAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDKDDNFYFIEVNPRL 349 (1427)
Q Consensus 279 ---~l~erd~s~--qr~~qk~-ie~aPa~~l~~e~~~~l~~~a~~l~~al---g~~G~~~VEflvd~dG~~yfIEINpRl 349 (1427)
+...|...- -|.+... ....+. .+++ ++.+.|.+++..+ |+. .+.||++ | .+++|||++-
T Consensus 230 g~~~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~~----~~~~ia~~~~~~l~~~GL~-~~gVDli----~-~~l~EIN~~s 298 (338)
T PRK12458 230 GHYAAMRRVPAGGDVRSNVHAGGSVVKH-TLTK----EELELCEAIRPKLVRDGLF-FVGLDIV----G-DKLVEVNVFS 298 (338)
T ss_pred cceeEEEEecCCCCeeecccCCCcccCc-CCCH----HHHHHHHHHHHHHhhcCCe-EEeEEEE----C-CEEEEEeCCC
Confidence 554442211 0111111 112222 3554 4455555655554 553 6779997 2 3799999998
Q ss_pred CCchhHHHHHhCCCHHHHHHHHH
Q psy15244 350 QVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 350 ~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
+++.+-.+..+|+|+....+...
T Consensus 299 p~g~~~~~~~~g~d~a~~i~~~i 321 (338)
T PRK12458 299 PGGLTRINKLNKIDFVEDIIEAL 321 (338)
T ss_pred cchHHHHHHHhCCCHHHHHHHHH
Confidence 87777777889999999988865
No 137
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.56 E-value=6.8e-14 Score=151.07 Aligned_cols=247 Identities=19% Similarity=0.219 Sum_probs=166.9
Q ss_pred HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHHHH
Q psy15244 71 RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDFAK 149 (1427)
Q Consensus 71 riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~a~ 149 (1427)
.++++.++.|+.+.....-.|.. .+-.+..- + . ...+.+-+.+++.++-.++.- .++ ....+.+
T Consensus 29 sll~~F~~~~ve~y~~~~f~~~~------ig~~f~s~----~-~--~~~~~~ek~le~~Da~LvIAPEdd~--lLy~Ltr 93 (307)
T COG1821 29 SLLRAFAKSGVEVYETLTFADPS------IGVRFKST----A-D--DVLRDEEKALEKADATLVIAPEDDG--LLYSLTR 93 (307)
T ss_pred HHHHHHHhcCceEEEeecccccc------cceeeecc----h-h--HHHHHHHHHHhcCCeeEEEecCcCC--hHHHHHH
Confidence 36788888997655443322221 11111100 0 0 113344445554333334322 233 3346777
Q ss_pred HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecC
Q psy15244 150 AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN 229 (1427)
Q Consensus 150 ~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s 229 (1427)
..++. ...+|+|+++++.+.||..+...++.+ +++|+.+ . ....+--.|+||++|+||.|+.+..+
T Consensus 94 i~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~--e----------~~~~~~k~ViKp~dgCgge~i~~~~~ 159 (307)
T COG1821 94 IYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTR--E----------WAEEPKKYVIKPADGCGGEGILFGRD 159 (307)
T ss_pred HHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcc--c----------cccCCceEEecccccCCcceeeccCC
Confidence 77777 666899999999999999999999999 9999875 1 11233458999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc-----cceEE-EEccCCCC
Q psy15244 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR-----YQKVI-QIAPAQDM 303 (1427)
Q Consensus 230 ~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~-----~qk~i-e~aPa~~l 303 (1427)
..++ .++|+||+ |.|.||. +.+|. .+..| |+.|. ..+.. ...++ ..
T Consensus 160 ~pd~-------------------~i~qEfIe-G~~lSVS-L~~GE-kv~pL-----svNrQfi~~~~~~~~y~gg~~-pi 211 (307)
T COG1821 160 FPDI-------------------EIAQEFIE-GEHLSVS-LSVGE-KVLPL-----SVNRQFIIFAGSELVYNGGRT-PI 211 (307)
T ss_pred Ccch-------------------hhHHHhcC-CcceEEE-EecCC-ccccc-----eechhhhhhccceeeeccCcC-CC
Confidence 6653 47889999 9999999 55543 23333 23222 12222 23344 36
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 304 SVSVRDAITETSVRLAKSLG-YSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 304 ~~e~~~~l~~~a~~l~~alg-~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
+.+..+++.+.|+++++.++ +.|...|++++. ++||+||||||+.-..--...+++-++.+..+.-..|.-
T Consensus 212 ~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~ 283 (307)
T COG1821 212 DHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKV 283 (307)
T ss_pred CcHHHHHHHHHHHHHHHhhccccceeeEEEEec--CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCccccc
Confidence 77999999999999999996 889999999997 459999999999865333445577778887777666664
No 138
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.54 E-value=2.6e-14 Score=168.83 Aligned_cols=76 Identities=41% Similarity=0.670 Sum_probs=71.6
Q ss_pred cCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1351 KADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1351 ~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+......+.+.|||||+|++|.|++|++|.+||+|+++||||||+.|+||.+|+|+++.+++|++|..|++|++++
T Consensus 569 ~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 569 KVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred cccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 3444567889999999999999999999999999999999999999999999999999999999999999999986
No 139
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.53 E-value=2.6e-13 Score=178.34 Aligned_cols=240 Identities=23% Similarity=0.313 Sum_probs=169.6
Q ss_pred HHHHHHHHHhcCCCEEEeCCCcccccH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCC
Q psy15244 119 IPEIICIAKNNNVDAIHPGYGFLSERE--DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTD 196 (1427)
Q Consensus 119 i~~Ii~ia~~~~vDaI~pg~gflsE~~--~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s 196 (1427)
-..|++.|.+.++....-..|.+-... .-.+.+... .+--.+..++..+.||..++++|+++|||+|++. .+.+
T Consensus 161 t~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~s 236 (864)
T TIGR02068 161 TAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQS 236 (864)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EECC
Confidence 467777777777765543322111100 000111111 1113578899999999999999999999999986 6889
Q ss_pred HHHHHHHHHhcCCcEEEeecCCCCCcCeEE-ecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 197 VDKVKEFCDEVEFPVILKAAFGGGGRGMRM-VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 197 ~eea~~~a~~iGyPvVVKP~~GgGGrGV~i-V~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
.+++.++++++|||+||||..|++|+||.+ +++.+++.++++.+.+. +..++||+||+ |+++.+.++. |
T Consensus 237 ~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~-G~e~rvlVv~---~ 306 (864)
T TIGR02068 237 AEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFIT-GRDHRLLVVG---G 306 (864)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEecc-CCEEEEEEEC---C
Confidence 999999999999999999999999999998 99999999999887543 36899999999 7999987753 3
Q ss_pred cEEEeeeecccc-------------------ccc----------------------------------cceEEE------
Q psy15244 276 DVVHLYERDCSM-------------------QRR----------------------------------YQKVIQ------ 296 (1427)
Q Consensus 276 ~vv~l~erd~s~-------------------qr~----------------------------------~qk~ie------ 296 (1427)
+++...+|.... .|| .+.+.-
T Consensus 307 ~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nl 386 (864)
T TIGR02068 307 KVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANL 386 (864)
T ss_pred EEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccc
Confidence 577665554311 011 000000
Q ss_pred --EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC------CCcEEEEeeCCCCCCc-hhHHHHHhCCCHHHH
Q psy15244 297 --IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK------DDNFYFIEVNPRLQVE-HTLSEEITGIDVVQS 367 (1427)
Q Consensus 297 --~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~------dG~~yfIEINpRl~ge-~~vte~~tGiDLv~~ 367 (1427)
..-+...+++..++..+.|+++++++|+. .+.||++..+ .....+||+|+.++-. |..-..-.+.++...
T Consensus 387 s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~ 465 (864)
T TIGR02068 387 STGGVAIDRTDEIHPENAATAVRAAKIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARA 465 (864)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHH
Confidence 00111346677788999999999999997 6669998752 2236899999999854 444444457788888
Q ss_pred HHHHHc
Q psy15244 368 QIKIAQ 373 (1427)
Q Consensus 368 ~i~iA~ 373 (1427)
.+....
T Consensus 466 Il~~lf 471 (864)
T TIGR02068 466 IVDMLF 471 (864)
T ss_pred HHHHhc
Confidence 887664
No 140
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.51 E-value=7.7e-14 Score=127.31 Aligned_cols=69 Identities=32% Similarity=0.513 Sum_probs=67.2
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|.|||+|+|++|.|++||+|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999999986
No 141
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.49 E-value=1.1e-12 Score=168.72 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEe---cCHHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMV---ANKDAIEEN 236 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV---~s~eeL~~a 236 (1427)
.+..+...++||..+|++++++|||+|++. .+.+.+++.+.+..+ |||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAGD--EFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 445567788999999999999999999986 678888887777764 89999999999999999986 468888888
Q ss_pred HHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccc---------c----------ccc---cce-
Q psy15244 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS---------M----------QRR---YQK- 293 (1427)
Q Consensus 237 ~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s---------~----------qr~---~qk- 293 (1427)
++.+.+. +..++|||||+ |+|+.|.++. |+++....|... + .+| |..
T Consensus 556 ~~~a~~~------~~~vlVEEfI~-G~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIV-GTEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEeccc-CCEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8776432 46799999999 8999998873 356655444211 0 000 000
Q ss_pred -------------------EEEEcc-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Q psy15244 294 -------------------VIQIAP-------------------AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335 (1427)
Q Consensus 294 -------------------~ie~aP-------------------a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd 335 (1427)
..+..| +..+++.+.+...+.|+++++++|+. .+.||+++.
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 000111 11456778899999999999999987 566999986
Q ss_pred C-C-----C--cEEEEeeCCCCCCc-hhHHHHHhCCCHHHHHHH
Q psy15244 336 K-D-----D--NFYFIEVNPRLQVE-HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 336 ~-d-----G--~~yfIEINpRl~ge-~~vte~~tGiDLv~~~i~ 370 (1427)
+ . . +..+||+|.+++-. |..-..-...|+.+..+.
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 4 1 2 57899999999854 432222233444444443
No 142
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.47 E-value=1.1e-12 Score=166.04 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=142.8
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecC---HHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVAN---KDAIEEN 236 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s---~eeL~~a 236 (1427)
.+..++..|.||..+|++++++|||||++. .+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 467788999999999999999999999986 678887777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecc---------cc----------ccc---cc--
Q psy15244 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDC---------SM----------QRR---YQ-- 292 (1427)
Q Consensus 237 ~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~---------s~----------qr~---~q-- 292 (1427)
++.+.+. +..++||+||+ |+|+.|.|+.+ +++....|.- ++ .+| |.
T Consensus 543 l~~A~~~------~~~VLVEefI~-G~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLP-GTEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEeccc-CCEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8765432 46799999999 89999988864 4555433320 00 000 00
Q ss_pred --e---------------EEEEcc-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Q psy15244 293 --K---------------VIQIAP-------------------AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336 (1427)
Q Consensus 293 --k---------------~ie~aP-------------------a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~ 336 (1427)
+ ..+..| +..+++++.+...+.|+++++++|+. ++.||+++.+
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 0 001111 11456788899999999999999997 8889999863
Q ss_pred C--------CcEEEEeeCCCCCCc-hhHHHHHhCCCHHHHHHH
Q psy15244 337 D--------DNFYFIEVNPRLQVE-HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 337 d--------G~~yfIEINpRl~ge-~~vte~~tGiDLv~~~i~ 370 (1427)
- ..+.+||+|.+++-. |..-..-.+-|+....+.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 1 226799999999954 433333334455544443
No 143
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.47 E-value=7.4e-12 Score=147.10 Aligned_cols=275 Identities=14% Similarity=0.151 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHH--HHHHHHHhcCCCEEEeCCC--ccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIP--EIICIAKNNNVDAIHPGYG--FLS 142 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~--~Ii~ia~~~~vDaI~pg~g--fls 142 (1427)
...+++.+++++|++++.+....-......-.+... +.+..+ ...+.... ..+. -...|+|++-.+ +..
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~---l~~~D~v~~R~~~~~~~ 92 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPN---KQDWYTLGEKVRLS---LGELDAVLMRKDPPFDM 92 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccC---CcceeecCcccccc---cccCCEEEEeCCCCCCh
Confidence 467899999999999887754432211111112111 222111 01110000 1111 124799987632 221
Q ss_pred c---cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 143 E---REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 143 E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
+ ...+.+.++..|++++ +++++++.+.||..+.+++. ++|++. ...+.+++.++++++| |+|+||..|+
T Consensus 93 ~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~~~~g-~vVvKPl~G~ 164 (312)
T TIGR01380 93 EYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFLAEHG-DIVLKPLDGM 164 (312)
T ss_pred hhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHHHHcC-CEEEEECCCC
Confidence 1 1367888889999876 88999999999999887653 788875 5678899999999998 9999999999
Q ss_pred CCcCeEEecCHH-HHHHHHHHHHHHHHHccCCCcEEEEeeccC--CceEEEEEEecccccEEE-eeeecccc--ccccce
Q psy15244 220 GGRGMRMVANKD-AIEENFKRAQSEALASFGKDDMLVEKYIDR--PRHIEVQILGDKYGDVVH-LYERDCSM--QRRYQK 293 (1427)
Q Consensus 220 GGrGV~iV~s~e-eL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--greieVqvl~Dg~G~vv~-l~erd~s~--qr~~qk 293 (1427)
||+|+.++.+.+ ++...++.. ...+...+++|+||+. +.++.+.++. |+++. ...|...- -|.+..
T Consensus 165 ~G~gv~~v~~~~~~~~~~~~~~-----~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~~ 236 (312)
T TIGR01380 165 GGEGIFRLDPGDPNFNSILETM-----TQRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNLA 236 (312)
T ss_pred CCceEEEEcCCCccHHHHHHHH-----HhccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCcccccc
Confidence 999999997633 343333222 1223468999999984 3688887764 35553 44442111 111111
Q ss_pred E-EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 294 V-IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 294 ~-ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
. ....|. .++++. .++...+...++++|+. .+.||++ | .||+|||+-=+.+..-.+.++|+|+....+...
T Consensus 237 ~Gg~~~~~-~l~~e~-~~ia~~~~~~~~~~gl~-~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 237 VGGRGEAT-ELSERD-REICADVAPELKRRGLL-FVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred CCceeecc-CCCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 1 223333 356543 34444444455666764 6779998 3 579999987444555567779999999888754
No 144
>PRK06748 hypothetical protein; Validated
Probab=99.47 E-value=2.4e-13 Score=126.36 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=64.5
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcC-CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM-KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam-Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|.|||||+|++|+|++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 589999999999999999999999999999997 45669999999999999999999999999999986
No 145
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.47 E-value=8.2e-14 Score=128.47 Aligned_cols=67 Identities=39% Similarity=0.615 Sum_probs=64.4
Q ss_pred ceecCCCeEEEE------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1359 EIGAPMPGNIIE------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1359 ~V~APm~G~v~~------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|.+|++|...+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++++++|+.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 689999998776 9999999999999999999999999999999999999999999999999999986
No 146
>PRK05246 glutathione synthetase; Provisional
Probab=99.46 E-value=1.3e-11 Score=145.60 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHH--HHHHHHHhcCCCEEEeCCC--ccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIP--EIICIAKNNNVDAIHPGYG--FLS 142 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~--~Ii~ia~~~~vDaI~pg~g--fls 142 (1427)
...+++++++++|++++.+....-......-.+... +.+. . ....|.... ....+ ...|+|++-.+ +-.
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~-~--~~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~~ 93 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVR-D--DKGDWYELGEEQRLPL---ADFDVILMRKDPPFDM 93 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEec-c--CCccceeccccccCcc---ccCCEEEEcCCCCCCh
Confidence 357899999999999887754322111111111000 1111 0 011111100 00111 23799997632 211
Q ss_pred c---cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 143 E---REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 143 E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
+ ...+.+.++..|++++ +++++++.+.||..+.+++. ++|++. ...+.+++.++++++| |+|+||..|+
T Consensus 94 ~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~~~~~-~vVlKP~~G~ 165 (316)
T PRK05246 94 EYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFRAEHG-DIILKPLDGM 165 (316)
T ss_pred HHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHHHHCC-CEEEEECCCC
Confidence 1 1246777787899876 88999999999999988765 688865 5778899999999998 9999999999
Q ss_pred CCcCeEEecC-HHHHHHHHHHHHHHHHHccCCCcEEEEeeccC--CceEEEEEEecccccEEE-eeeecccc--ccccc-
Q psy15244 220 GGRGMRMVAN-KDAIEENFKRAQSEALASFGKDDMLVEKYIDR--PRHIEVQILGDKYGDVVH-LYERDCSM--QRRYQ- 292 (1427)
Q Consensus 220 GGrGV~iV~s-~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--greieVqvl~Dg~G~vv~-l~erd~s~--qr~~q- 292 (1427)
+|+|+.++.. ..++...++... ..+...+++|+||+. +.++.|.++ + |++++ ...|-..- -+.+.
T Consensus 166 ~G~gV~~i~~~~~~~~~~~~~l~-----~~~~~~~lvQ~~I~~~~~~D~Rv~vv-~--g~vv~~a~~R~~~~~~~rtN~~ 237 (316)
T PRK05246 166 GGAGIFRVKADDPNLGSILETLT-----EHGREPVMAQRYLPEIKEGDKRILLV-D--GEPVGYALARIPAGGETRGNLA 237 (316)
T ss_pred CccceEEEeCCCccHHHHHHHHH-----HccCCeEEEEeccccCCCCCEEEEEE-C--CEEhhheeEecCCCCCcccCcc
Confidence 9999999954 444443333321 234568999999986 367887776 3 46776 55552111 11111
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
.-....|. .++++. .+++..+.+.++.+|+. .+.||++ | .|++|||..-+++..-.+.+||+|+.+..++..
T Consensus 238 ~Gg~~~~~-~l~~~~-~~ia~~~~~~l~~~gl~-~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~ 309 (316)
T PRK05246 238 AGGRGEAT-PLTERD-REICAAIGPELKERGLI-FVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDAI 309 (316)
T ss_pred CCceEecc-CCCHHH-HHHHHHHHHHHHHhCCC-EEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHHH
Confidence 11223344 355443 34444444444666653 6789998 2 279999987455588888999999999988765
Q ss_pred c
Q psy15244 373 Q 373 (1427)
Q Consensus 373 ~ 373 (1427)
.
T Consensus 310 ~ 310 (316)
T PRK05246 310 E 310 (316)
T ss_pred H
Confidence 4
No 147
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.43 E-value=1e-11 Score=144.94 Aligned_cols=178 Identities=13% Similarity=0.247 Sum_probs=130.1
Q ss_pred HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCC-------CCCCCCccccCCCHHHHH---HHHHhcCCcEEEeecCC-
Q psy15244 150 AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD-------VPIIPGTTEPVTDVDKVK---EFCDEVEFPVILKAAFG- 218 (1427)
Q Consensus 150 ~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aG-------Vpvp~~~~~~v~s~eea~---~~a~~iGyPvVVKP~~G- 218 (1427)
..+..|++++ .++++++.+.||..+.+.+.++| ||+|++. .+.+.+.+. .....+|||+|+||..|
T Consensus 87 ~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~g~ 163 (328)
T PLN02941 87 REKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLVAD 163 (328)
T ss_pred HHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecccC
Confidence 4455688877 88999999999999999999999 9999986 566765533 33468899999999999
Q ss_pred --CCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeecccccc-c-c-c
Q psy15244 219 --GGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERDCSMQR-R-Y-Q 292 (1427)
Q Consensus 219 --gGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd~s~qr-~-~-q 292 (1427)
+.|++|.++.+.+.|... +.++++||||+. ++.+-|.+++|. +. ...| .|... + . .
T Consensus 164 Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd~---v~-~~~R-~S~~n~~~~~~ 225 (328)
T PLN02941 164 GSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGDY---VK-CVRR-FSLPDVSEEEL 225 (328)
T ss_pred CCccccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECCE---EE-EEEe-cCCcccccccc
Confidence 789999999999887751 247999999975 588999998875 32 2222 12210 0 0 0
Q ss_pred eEE------------------E----EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC--CcEEEEeeCCC
Q psy15244 293 KVI------------------Q----IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD--DNFYFIEVNPR 348 (1427)
Q Consensus 293 k~i------------------e----~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d--G~~yfIEINpR 348 (1427)
... . .-|. .......+++.+.|.++.++||.. .+.||++.+.+ +++++||||.-
T Consensus 226 n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~-~~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~f 303 (328)
T PLN02941 226 SSAEGVLPFPRVSNAAASADDADNGGLDPE-VAELPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYF 303 (328)
T ss_pred cccccccccccccccccccccccccccccc-cccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCC
Confidence 000 0 0000 011112356999999999999995 88899999863 46999999998
Q ss_pred CC
Q psy15244 349 LQ 350 (1427)
Q Consensus 349 l~ 350 (1427)
++
T Consensus 304 P~ 305 (328)
T PLN02941 304 PG 305 (328)
T ss_pred Cc
Confidence 87
No 148
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.41 E-value=6.8e-13 Score=139.43 Aligned_cols=70 Identities=31% Similarity=0.466 Sum_probs=67.1
Q ss_pred CCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|++++++.|+.|+.|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999997 79999999999999999999999999999999999999999999999999999885
No 149
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.39 E-value=5.7e-11 Score=148.86 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=99.9
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++ +.||.+++.+|+.... . .+
T Consensus 435 l~~~~~p~v~~~f~~~~~~---------~~~~~~~~~~~~~~~~---~--------------------------~~---- 472 (593)
T PRK14040 435 LTYALFPQIGLKFLENRHN---------PAAFEPVPQAEAAQPA---A--------------------------KA---- 472 (593)
T ss_pred HHHHhccHHHHHHHHhhcc---------cccccCCCcccccccc---c--------------------------cC----
Confidence 7788999999999888754 5788888877765410 0 00
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhc-cc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLR-LK 1283 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 1283 (1427)
...-..++.++++ |+.+.|++...+ .+ . .+.... ...+.....++. ..
T Consensus 473 ---------~e~g~~~~~~~vn-G~~~~V~v~~~~-~~----------------~--~~~~~~--~~~~~~~~~~~a~~~ 521 (593)
T PRK14040 473 ---------EPAGSETYTVEVE-GKAYVVKVSEGG-DI----------------S--QITPAA--PAAAPAAAAAAAPAA 521 (593)
T ss_pred ---------CCCCCeEEEEEEC-CEEEEEEECCCC-cc----------------c--cccccc--cccccccccccccCC
Confidence 0011246888998 999998833322 00 0 010000 000000011112 22
Q ss_pred ccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecC
Q psy15244 1284 SERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAP 1363 (1427)
Q Consensus 1284 s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~AP 1363 (1427)
+....|.++|.|+.++|.++.|+.+ .. |..-+.++.. . ....|.||
T Consensus 522 ~~~~~V~Ap~~G~I~~~~V~~Gd~V-----------~~-Gd~l~~iEam---------------------K-me~~I~Ap 567 (593)
T PRK14040 522 AAGEPVTAPLAGNIFKVIVTEGQTV-----------AE-GDVLLILEAM---------------------K-METEIRAA 567 (593)
T ss_pred CCCceEECCccEEEEEEEeCCCCEe-----------CC-CCEEEEEecC---------------------c-eeEEEEcC
Confidence 4456899999999999999999997 22 3322222211 0 24579999
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.+|+|.++.|++||.|+.||+|++|
T Consensus 568 ~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 568 QAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEe
Confidence 9999999999999999999999987
No 150
>PRK07051 hypothetical protein; Validated
Probab=99.34 E-value=3.5e-12 Score=119.49 Aligned_cols=69 Identities=35% Similarity=0.500 Sum_probs=66.8
Q ss_pred CceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||++|++++ ++|++||.|++||+++.+|+|||+++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999999999999999999999885
No 151
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.34 E-value=1.6e-10 Score=129.19 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=184.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccc--cccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEE
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHR--TKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAI 134 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~--~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI 134 (1427)
+|-.+| +..|+.|++.|++-|++|+++....- .-+.. ..+|+.+.++ +|.|+ ++|.+-.++. ++|
T Consensus 20 ~Iat~g-SHSaL~Il~GAK~EGF~Ti~v~~~gr-~~~Y~~f~~a~e~i~v~-------~f~dil~~~iqe~L~~~--n~I 88 (361)
T COG1759 20 TIATIG-SHSALQILDGAKEEGFRTIAVCQRGR-EKPYEKFPVADEVIIVD-------KFSDILNEEIQEELREL--NAI 88 (361)
T ss_pred EEEEee-cchHHHHhhhHHhcCCcEEEEEecCc-cchHHhhchhheEEEec-------hhHHHhhHHHHHHHHHc--CeE
Confidence 444444 45799999999999999999976432 22222 3366666654 45443 2444544443 345
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+.-.|.+......-....+.-+|.+|+ ...++.-.|...-+.+|.++||+.|. ...|++|+ .-|||||
T Consensus 89 ~IP~gSfv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~----~~~~PeeI-------dr~VIVK 156 (361)
T COG1759 89 FIPHGSFVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPK----KYKSPEEI-------DRPVIVK 156 (361)
T ss_pred EecCCceEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCc----ccCChHHc-------CCceEEe
Confidence 444454444444433455567888886 56777777999999999999999998 46788775 4599999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHc-cCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc---
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALAS-FGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR--- 290 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~-fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~--- 290 (1427)
....-||||-+++.|.+|+.+..++........ -+-.+..|||||- |-++..+.+...--+.+.+..-|-.++.+
T Consensus 157 ~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~-G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg 235 (361)
T COG1759 157 LPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV-GAPFYFHYFYSPIKDRLELLGIDRRYESNLDG 235 (361)
T ss_pred cCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee-ccceeeeeeeccccCceeEeeeeheeeccchh
Confidence 999999999999999999999998876521100 0124689999999 66666665543221223333222111111
Q ss_pred -------cc---------eEEEEccCCCCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCC
Q psy15244 291 -------YQ---------KVIQIAPAQDMSVSVRDAITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 291 -------~q---------k~ie~aPa~~l~~e~~~~l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpR 348 (1427)
.| .++...|. .+-+.+..++.+++.+++++. |+-|+++.|.++++|=++|+.|+.+|
T Consensus 236 ~~RlPa~~ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~R 314 (361)
T COG1759 236 LVRLPAKDQLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSAR 314 (361)
T ss_pred hccCCHHHHhhcCCCceEEEECCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEecc
Confidence 11 11223344 467788888999999888765 78899999999999988999999999
Q ss_pred CCCchh
Q psy15244 349 LQVEHT 354 (1427)
Q Consensus 349 l~ge~~ 354 (1427)
+.++.-
T Consensus 315 i~gGTN 320 (361)
T COG1759 315 IVGGTN 320 (361)
T ss_pred ccCCcc
Confidence 998643
No 152
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.33 E-value=3.3e-12 Score=140.38 Aligned_cols=72 Identities=29% Similarity=0.474 Sum_probs=68.6
Q ss_pred CCCCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1355 DTAGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1355 ~~~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+...|.|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|+++.++.|+.|..|++|++|+
T Consensus 195 s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 195 SSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3446799999999999 79999999999999999999999999999999999999999999999999999986
No 153
>KOG0368|consensus
Probab=99.32 E-value=1e-12 Score=165.75 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=136.6
Q ss_pred cceeEEEEeccceeeeeecccccccc-CCCchhhhhcccccceeccCCCCCcceeeee-ecCCcceEEEeeccccccc--
Q psy15244 1246 GERTVFFLYNGLHTTNTYNLQQILKT-SPSDVFAFLRLKSERIFLNGPNIGEEFSCEF-KTGDTAYVTTLSISEHLND-- 1321 (1427)
Q Consensus 1246 ~~r~~~~~~~g~~~~~~~~~~~~~~~-~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v-~~Gd~~~~~~~~i~~~~~~-- 1321 (1427)
-.|++|=.|.+.++++|+++.+.+++ ++.++++. |.+|.++| +.+...|++.++-+.....
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e---------------~~kY~lkV~rss~~~y~l~mngs~~~v~v~ 641 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYE---------------GNKYTLKVVRSSSGTYVLRMNGSEVTVGVH 641 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEec---------------CcEEEEEEEecCCceEEEEEcCcEEEEEEE
Confidence 35677888999999999999999997 77777655 99999999 8888888888765442111
Q ss_pred -CCceEEEEEECCEEeEe---ch----hhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCc
Q psy15244 1322 -HGERTVFFLYNGQLRSL---DK----NKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKT 1393 (1427)
Q Consensus 1322 -~g~r~v~~elnG~~~~v---d~----~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKm 1393 (1427)
-+...+.+.+||+++.+ +. .......++....+++|..+++|.||++++++|+.|++|.+||+.+++|.|||
T Consensus 642 ~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKM 721 (2196)
T KOG0368|consen 642 QLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKM 721 (2196)
T ss_pred EecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhhe
Confidence 12235888999999988 11 12334455555668899999999999999999999999999999999999999
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+++.|+.+|+|. ...++|+.+++|++|+.++
T Consensus 722 vm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 722 VMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred eeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 9999999999988 7889999999999999876
No 154
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.32 E-value=4.9e-12 Score=132.91 Aligned_cols=71 Identities=32% Similarity=0.475 Sum_probs=67.6
Q ss_pred CCCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
....|.|||.|+++. |+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.|+.|..|++|++|+
T Consensus 78 ~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 78 EGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 346899999999997 89999999999999999999999999999999999999999999999999999885
No 155
>KOG0238|consensus
Probab=99.32 E-value=8e-12 Score=145.43 Aligned_cols=75 Identities=37% Similarity=0.578 Sum_probs=70.7
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.....++.+.|||||.|.+++|++||.|++||.+++|+|||||+.++||.+|+|+.+.++.|++|..|++|++++
T Consensus 596 ~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 596 TKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred hccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 444567789999999999999999999999999999999999999999999999999999999999999999875
No 156
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.30 E-value=6.6e-10 Score=139.35 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=98.4
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++| .||.+++++||+. + + +. + . . .
T Consensus 424 l~~~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~-----~-~~------~----~---~------~ 464 (582)
T TIGR01108 424 LTYALFPQVGLKFLENRHNP---------AAFEPKPEEKVIE-----Q-----E-HA------Q----V---V------G 464 (582)
T ss_pred HHHHhccHHHHHHHHhhhcc---------ccccCCCCcchhh-----h-----h-hh------h----c---c------c
Confidence 77889999999999998876 4788888887764 1 0 00 0 0 0 0
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
. +.. ..-..++.++++ |+++.|++....... +...... . .... ..++...+
T Consensus 465 ~-~~~-----~~g~~~~~~~vn-G~~~~V~v~d~~~~~-------------------~~~~~~~-~-~~~~-~~~~a~~~ 515 (582)
T TIGR01108 465 K-YEE-----THASGSYTVEVE-GKAFVVKVSPGGDVS-------------------QITASAP-A-NTSG-GTVAAKAG 515 (582)
T ss_pred c-ccc-----cCCceEEEEEEC-CEEEEEEEcCCcccc-------------------ccccccc-c-cccc-ccccCCCC
Confidence 0 000 001346888898 999988833322110 1110000 0 0000 01112223
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.++|.|..++|.+++||.+ .. |..-+.+|-. .....|.||.
T Consensus 516 ~~~~v~ap~~G~v~~~~V~~Gd~V-----------~~-G~~l~~iEam----------------------Kme~~i~ap~ 561 (582)
T TIGR01108 516 AGTPVTAPIAGSIVKVKVSEGQTV-----------AE-GEVLLILEAM----------------------KMETEIKAAA 561 (582)
T ss_pred CCCeEeCCccEEEEEEEeCCCCEE-----------CC-CCEEEEEEec----------------------cceeEEecCC
Confidence 455799999999999999999997 23 3322222211 1356899999
Q ss_pred CeEEEEEEecCCCEEecCCEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVL 1385 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l 1385 (1427)
+|+|.++.|++||.|+.||+|
T Consensus 562 ~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 562 AGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999975
No 157
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.26 E-value=1.7e-10 Score=133.93 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=124.7
Q ss_pred CCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH----HHHHHHHhcCC-cEEEeecCCCCCcCeEEecCHHH--
Q psy15244 160 GPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD----KVKEFCDEVEF-PVILKAAFGGGGRGMRMVANKDA-- 232 (1427)
Q Consensus 160 Gps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e----ea~~~a~~iGy-PvVVKP~~GgGGrGV~iV~s~ee-- 232 (1427)
-++.+...++.||..+..+++++|||+|+++ .+.+.+ ++.+++. ++ |+|+||..|++|+||.++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~ 101 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGR 101 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEeccccc
Confidence 3677888899999999999999999999965 344443 3444433 45 69999999999999999976543
Q ss_pred -------------HHHHHHHHHHHHHHccCC-CcEEEEeeccCC-----------ceEEEEEEecccccEEEeeeeccc-
Q psy15244 233 -------------IEENFKRAQSEALASFGK-DDMLVEKYIDRP-----------RHIEVQILGDKYGDVVHLYERDCS- 286 (1427)
Q Consensus 233 -------------L~~a~~~a~~ea~~~fg~-~~vlVEeyIegg-----------reieVqvl~Dg~G~vv~l~erd~s- 286 (1427)
+...+......-....+. +.+++|+++... +.+.|.++.+. .+...-|-..
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~---~vaa~~R~~~~ 178 (317)
T TIGR02291 102 YRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGY---PVMAMMRLPTR 178 (317)
T ss_pred cccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCE---EEEEEEEccCc
Confidence 444333322111111122 235565544422 45666666543 3322223110
Q ss_pred --ccccc----ceEE-------------------EEccC-----CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Q psy15244 287 --MQRRY----QKVI-------------------QIAPA-----QDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336 (1427)
Q Consensus 287 --~qr~~----qk~i-------------------e~aPa-----~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~ 336 (1427)
..+.+ .... ..-|. ..+..+..+++.+.|.++.+++|+ |...+|++++.
T Consensus 179 ~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~ 257 (317)
T TIGR02291 179 ASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK 257 (317)
T ss_pred cCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC
Confidence 01111 0011 01111 022335567899999999999998 89999999987
Q ss_pred CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHH
Q psy15244 337 DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 337 dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~ 370 (1427)
++.++++|+|+.++-++ ......|++-.-..+.
T Consensus 258 ~~g~~VlEVN~~Pg~t~-~~a~~~Gl~~~~~~~~ 290 (317)
T TIGR02291 258 EEGPLVLELNARPGLAI-QIANGAGLLPRLKHIE 290 (317)
T ss_pred CCCEEEEEeCCCCCCCH-HHHHHCCCcHHHHHHH
Confidence 66799999999998663 3333456654444443
No 158
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.21 E-value=5.7e-11 Score=106.74 Aligned_cols=67 Identities=45% Similarity=0.708 Sum_probs=64.7
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|.||++|+|.+|+|++|+.|++||+|+.+++||+..+|+||.+|+|.++.++.|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999875
No 159
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.01 E-value=1.3e-09 Score=100.31 Aligned_cols=61 Identities=33% Similarity=0.520 Sum_probs=59.1
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|++.+|++++|+.|++||+|+.+|+|||..+|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999874
No 160
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.00 E-value=7.5e-10 Score=133.69 Aligned_cols=67 Identities=22% Similarity=0.427 Sum_probs=62.5
Q ss_pred eecCC-CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPM-PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm-~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++.-| +|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 99 lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 99 MGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred CCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 33334 59999999999999999999999999999999999999999999999999999999999985
No 161
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=98.98 E-value=1.1e-09 Score=131.39 Aligned_cols=67 Identities=33% Similarity=0.547 Sum_probs=63.0
Q ss_pred eecCC-CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPM-PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm-~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++..| .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 52 lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 52 MGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred CCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 44455 59999999999999999999999999999999999999999999999999999999999985
No 162
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.96 E-value=1.3e-09 Score=130.58 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++.+++|+.|..|++|+.++
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~ 77 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVA 77 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence 359999999999999999999999999999999999999999999999999999999999886
No 163
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=98.82 E-value=9.2e-09 Score=124.43 Aligned_cols=62 Identities=29% Similarity=0.403 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999986
No 164
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.76 E-value=2.1e-07 Score=113.04 Aligned_cols=109 Identities=24% Similarity=0.298 Sum_probs=89.5
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEAL 245 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~ 245 (1427)
+++.+|++++++|||+|++. .+.+.+++.++++++ |||+|+||....||| ||+++.+.+++.+++++......
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 57889999999999999987 789999999999999 999999998655665 99999999999999988764311
Q ss_pred --Hc---cC--CCcEEEEeeccCCceEEEEEEeccc-ccEEEee
Q psy15244 246 --AS---FG--KDDMLVEKYIDRPRHIEVQILGDKY-GDVVHLY 281 (1427)
Q Consensus 246 --~~---fg--~~~vlVEeyIeggreieVqvl~Dg~-G~vv~l~ 281 (1427)
.. .| -..++||+++++++|+.+.+..|.. |.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 01 11 1259999999989999999999864 5655444
No 165
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.75 E-value=2.2e-07 Score=106.65 Aligned_cols=185 Identities=19% Similarity=0.328 Sum_probs=122.8
Q ss_pred HHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCC-CC--CCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEe
Q psy15244 151 VIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD-VP--IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227 (1427)
Q Consensus 151 ~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aG-Vp--vp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV 227 (1427)
-++.|++|+.|. +.||+...+.|.+.. +. .|++. .+.+.+++.+++++++ -|+|||..|++|+||..+
T Consensus 4 k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~--~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETE--LLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCce--EcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 356799999773 579999999999864 33 45543 6788899999999876 699999999999999866
Q ss_pred c----------------------CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC----CceEEEEEE--ecccc--cE
Q psy15244 228 A----------------------NKDAIEENFKRAQSEALASFGKDDMLVEKYIDR----PRHIEVQIL--GDKYG--DV 277 (1427)
Q Consensus 228 ~----------------------s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg----greieVqvl--~Dg~G--~v 277 (1427)
. +.++|...+.. ..+...++||+.|+- ++.+.+-++ .++.| .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKE-------LLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHH-------hcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 34555555543 234679999999983 345554444 45444 44
Q ss_pred EEeeeeccc---cccccceEEEEccC-CCC-----CHHHHHHHHHHHHHHHHHc----CC-CCeEEEEEEEcCCCcEEEE
Q psy15244 278 VHLYERDCS---MQRRYQKVIQIAPA-QDM-----SVSVRDAITETSVRLAKSL----GY-SNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 278 v~l~erd~s---~qr~~qk~ie~aPa-~~l-----~~e~~~~l~~~a~~l~~al----g~-~G~~~VEflvd~dG~~yfI 343 (1427)
..+..|-.. +..+...-....|. ..+ .....++|.+.+..+++++ |. -|-..+|+-+|.+|+++||
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWli 227 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLI 227 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEE
Confidence 444443211 11111000111110 011 2335677777777777655 55 4678899999999999999
Q ss_pred eeCCCCCC
Q psy15244 344 EVNPRLQV 351 (1427)
Q Consensus 344 EINpRl~g 351 (1427)
|+|++++-
T Consensus 228 EvN~kP~~ 235 (262)
T PF14398_consen 228 EVNSKPGK 235 (262)
T ss_pred EEeCCCCc
Confidence 99999884
No 166
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.73 E-value=2.9e-07 Score=111.71 Aligned_cols=173 Identities=20% Similarity=0.306 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcC-CcEEEeec--CCC-CC-cCeEEecCHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-FPVILKAA--FGG-GG-RGMRMVANKDAIEENFKRAQSEAL 245 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iG-yPvVVKP~--~Gg-GG-rGV~iV~s~eeL~~a~~~a~~ea~ 245 (1427)
+.+.+|++++++|||+|++. .+.+.+++.++++++| ||+|+||. .|+ |+ -||+++.+++|+.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 46788999999999999987 6789999999999999 99999998 222 22 299999999999999987754211
Q ss_pred Hc--c---CC--CcEEEEeeccCCceEEEEEEeccc--ccEEEeeee---cc-cc---ccccceEEEEccCC--------
Q psy15244 246 AS--F---GK--DDMLVEKYIDRPRHIEVQILGDKY--GDVVHLYER---DC-SM---QRRYQKVIQIAPAQ-------- 301 (1427)
Q Consensus 246 ~~--f---g~--~~vlVEeyIeggreieVqvl~Dg~--G~vv~l~er---d~-s~---qr~~qk~ie~aPa~-------- 301 (1427)
.. . |. ..++||+|++.++|+.+.++.|.. |-++.++.. +- .+ .......+...|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 10 0 11 369999999989999999999864 334433210 00 00 00111233333421
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEE---EEcCCCcEEEEee
Q psy15244 302 ------DMSVSVRDAITETSVRLAKSLGYSNAGTVEF---LLDKDDNFYFIEV 345 (1427)
Q Consensus 302 ------~l~~e~~~~l~~~a~~l~~alg~~G~~~VEf---lvd~dG~~yfIEI 345 (1427)
.++....+++.+.+.++.+.+.-..+..+|+ +++++|+++.+..
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Da 214 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDA 214 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEee
Confidence 2455666778888888877765444556665 5556665544443
No 167
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.72 E-value=5e-07 Score=104.97 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=126.5
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc---------ccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTT---------EPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANK 230 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~---------~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~ 230 (1427)
++.+...++.||..+++++.++|||+|+... ....+.+++.+++... ..++++||+.|+||+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6678888999999999999999999999321 0134678888888765 67999999999999999999766
Q ss_pred HH--HHHHHHHHHHHHHHccCCCcEEEEeeccCCce-----------EEEEEEecccccEEEe--eee--------c---
Q psy15244 231 DA--IEENFKRAQSEALASFGKDDMLVEKYIDRPRH-----------IEVQILGDKYGDVVHL--YER--------D--- 284 (1427)
Q Consensus 231 ee--L~~a~~~a~~ea~~~fg~~~vlVEeyIeggre-----------ieVqvl~Dg~G~vv~l--~er--------d--- 284 (1427)
+. +............ ..+...+++|++|..-.+ +.|..+.++ |.+..+ .-| |
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 52 1111111111111 111228999999984322 445555554 332211 000 0
Q ss_pred --------------ccc--ccccceEEEEccCCC-----CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEE
Q psy15244 285 --------------CSM--QRRYQKVIQIAPAQD-----MSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 285 --------------~s~--qr~~qk~ie~aPa~~-----l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfI 343 (1427)
+.. ........+.-|... +.-..-+++.+.+.++.+.+-..+....|+.+|++| |++|
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~ll 252 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLL 252 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEE
Confidence 000 001111222234221 122234789999999999888888899999999999 9999
Q ss_pred eeCCCCCCchhHHHHHhCCCHH
Q psy15244 344 EVNPRLQVEHTLSEEITGIDVV 365 (1427)
Q Consensus 344 EINpRl~ge~~vte~~tGiDLv 365 (1427)
|.|.|.+...... .++|.-+.
T Consensus 253 E~N~~~~pgl~~~-~~~g~gl~ 273 (285)
T PF14397_consen 253 EGNARWDPGLMIQ-IANGPGLF 273 (285)
T ss_pred EeeCCCCCCcHhh-hccCcchH
Confidence 9999954333322 44555443
No 168
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=98.71 E-value=3.5e-08 Score=119.12 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 39999999999999999999999999999999999999999999999999999999999986
No 169
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.62 E-value=7.1e-08 Score=123.37 Aligned_cols=62 Identities=32% Similarity=0.498 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++++++|+.|..|++|++|+
T Consensus 14 eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 14 EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999986
No 170
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.62 E-value=6.3e-08 Score=123.81 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=61.5
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999985
No 171
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.56 E-value=1.2e-07 Score=114.84 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=61.7
Q ss_pred CCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|. |+|++|+|++||.|++||+|++||+.|..++|.||.+|+|.+|.+++|+.|..|++|+.|+
T Consensus 13 ~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 13 TMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred ccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 464 9999999999999999999999999999999999999999999999999999999999986
No 172
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.55 E-value=1.8e-07 Score=113.78 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=62.1
Q ss_pred ecCCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1361 GAPMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1361 ~APm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|. |+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 7 g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 7 GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred CCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 33454 9999999999999999999999999999999999999999999999999999999999885
No 173
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.53 E-value=2e-07 Score=117.06 Aligned_cols=67 Identities=34% Similarity=0.536 Sum_probs=63.5
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++..|+|++|+|++||.|++||+|+++|+|||+++|.|+.+|+|++++++.|+.|..|++|++|+
T Consensus 8 lg~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 8 IGDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 3445789999999999999999999999999999999999999999999999999999999999885
No 174
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.50 E-value=2e-07 Score=117.16 Aligned_cols=62 Identities=39% Similarity=0.540 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 129 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999985
No 175
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.47 E-value=2.8e-07 Score=116.70 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|++++|+.|..|++|++|+
T Consensus 149 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999985
No 176
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.39 E-value=6e-07 Score=113.42 Aligned_cols=62 Identities=39% Similarity=0.533 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 38999999999999999999999999999999999999999999999999999999999885
No 177
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.37 E-value=1.7e-06 Score=77.83 Aligned_cols=64 Identities=33% Similarity=0.480 Sum_probs=61.1
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++-.|++.+|.++.|+.|.+|++++.+|+|||...+.+|.+|+|.+..++.|+.+..|++|++|
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5667999999999999999999999999999999999999999999999999999999999874
No 178
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.29 E-value=1.5e-06 Score=109.72 Aligned_cols=62 Identities=35% Similarity=0.479 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 49999999999999999999999999999999999999999999999999999999999875
No 179
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.20 E-value=3.6e-06 Score=103.02 Aligned_cols=62 Identities=31% Similarity=0.463 Sum_probs=60.4
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 16 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 16 EGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999885
No 180
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.19 E-value=3.3e-06 Score=103.47 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCe-eCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|.||+.++|.||.+|+|.++++++|+. |..|++|++|+
T Consensus 13 eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 13 TGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999999999 99999999984
No 181
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.17 E-value=2.2e-05 Score=91.79 Aligned_cols=166 Identities=20% Similarity=0.315 Sum_probs=113.3
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcC-CcEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHH--
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-FPVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEA-- 244 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iG-yPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea-- 244 (1427)
-+++|++++++|||+|++. .+.+.+++.++++++| .|+|+|+---.||| ||+++.|.+|..++.+......
T Consensus 5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 4688999999999999987 7999999999999998 89999998666665 7999999999998887765411
Q ss_pred --HHccCCCcEEEEeeccCC-ceEEEEEEecccccEEEee-eeccc-----cc---cccceEEEEccCCCCCHHHHHHHH
Q psy15244 245 --LASFGKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLY-ERDCS-----MQ---RRYQKVIQIAPAQDMSVSVRDAIT 312 (1427)
Q Consensus 245 --~~~fg~~~vlVEeyIegg-reieVqvl~Dg~G~vv~l~-erd~s-----~q---r~~qk~ie~aPa~~l~~e~~~~l~ 312 (1427)
...---..+|||+.++-. +|+-+.++.|.......+. ...-- +. +.......+.|...+.+-
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~g~~~~------ 156 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPY------ 156 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCccCCCHH------
Confidence 110013579999999944 5999999998776554432 11111 11 112234456676666553
Q ss_pred HHHHHHHHHcCCCCeE---EE-------EEEEcCCCcEEEEeeCCC
Q psy15244 313 ETSVRLAKSLGYSNAG---TV-------EFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 313 ~~a~~l~~alg~~G~~---~V-------Eflvd~dG~~yfIEINpR 348 (1427)
.+++++..+|+.|-. -. +.+++. ..-++||||=
T Consensus 157 -~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~--Da~lvEINPL 199 (387)
T COG0045 157 -QARELAFKLGLEGELVKQVADIIKKLYKLFVEK--DATLVEINPL 199 (387)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHc--CCcEEEeecc
Confidence 466777777777520 01 122222 3568888883
No 182
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.12 E-value=1.9e-05 Score=88.25 Aligned_cols=109 Identities=24% Similarity=0.389 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC-----CCcCeEE-ecCHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG-----GGRGMRM-VANKDAIEENFKRAQSEA 244 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg-----GGrGV~i-V~s~eeL~~a~~~a~~ea 244 (1427)
+-..+++++..+|||+|++. .+.|.+++.++++++|||+++|...-. ---||++ +++++++.+++++.....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp -HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 55788999999999999997 799999999999999999999998543 1227887 899999999999988776
Q ss_pred HHccC---CCcEEEEeecc-CCceEEEEEEecc-cccEEEee
Q psy15244 245 LASFG---KDDMLVEKYID-RPRHIEVQILGDK-YGDVVHLY 281 (1427)
Q Consensus 245 ~~~fg---~~~vlVEeyIe-ggreieVqvl~Dg-~G~vv~l~ 281 (1427)
..... ...++||+.++ ++.|+.+.+..|. .|.++.++
T Consensus 89 ~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G 130 (222)
T PF13549_consen 89 AAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG 130 (222)
T ss_dssp HHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE
T ss_pred HHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc
Confidence 54333 36899999999 8999999999985 46676654
No 183
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=98.11 E-value=6.2e-12 Score=149.97 Aligned_cols=191 Identities=7% Similarity=-0.127 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHCCCC-EEEEccccCcCCHHHHHHHHHHHHHHc--------------C-CceEEEeecCCcchHHHHHHH
Q psy15244 821 YYEDLAKQLVESGAQ-VLCLKDMAGLLKPTAAKLLIGSFREKY--------------P-NILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P~~~~~lv~~lr~~~--------------p-~ipi~~H~Hnd~GlA~An~la 884 (1427)
.+...++.+.+.|.+ .+.+.|++ ...|....++++.+...- | +++..+|+||+.|++++|.+.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 445556666667765 56777775 456777777777776432 2 355789999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CC-CCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DK-RCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~-~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
|...|+..++.|++|+++|+|+.+++ +..|-.. |. ++.+++..|..++.++...++..++.++|++|.+.|.+.++
T Consensus 190 ~Hn~~g~avant~~al~~ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 267 (344)
T TIGR02146 190 AHNDTGCAVANAYNAIEGGATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVGVTIPFN 267 (344)
T ss_pred ecCCCCHHHHHHHHHHHcCCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999984 3233222 32 23345556666665555556677889999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDV 1017 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev 1017 (1427)
.|..+..+.+..|.+|. +++.+..+.+..++.+|.. +.+..+.+.+.....+
T Consensus 268 ~~~~G~~~~~~~~g~h~-~~~~~~~~~y~~~~~s~~g--~~~~~~~~~~~g~~~~ 319 (344)
T TIGR02146 268 NPITGELAFTHKAGIHV-KAILGNPRTYEFLPPEVFG--RKRHILIARLTGKHAI 319 (344)
T ss_pred CCeeCcchhhcccchhH-HHHhCCcccCCCCCHHHcC--CcceEeeeccccHHHH
Confidence 99999999999999999 7777766666676666632 5556666666644443
No 184
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.11 E-value=6e-06 Score=101.59 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=59.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
.|+|.+|+|++||.|++||+|+++|++|+.++|.||.+|+|.++.+++|+ .|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 38999999999999999999999999999999999999999999999995 799999999884
No 185
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.09 E-value=0.0001 Score=89.57 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHH-
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEAL- 245 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~- 245 (1427)
-+..|++++++|||+|++. .+.+.+|+.+.++++||| +++|+..-.|+| ||++..|++|+.+++++......
T Consensus 5 E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 4678999999999999987 789999999999999995 599985333333 79999999999999998876421
Q ss_pred -Hcc-----CCCcEEEEeeccCCceEEEEEEeccc-ccEEEee
Q psy15244 246 -ASF-----GKDDMLVEKYIDRPRHIEVQILGDKY-GDVVHLY 281 (1427)
Q Consensus 246 -~~f-----g~~~vlVEeyIeggreieVqvl~Dg~-G~vv~l~ 281 (1427)
... .-..++||++++.++|+.+.+..|.. |.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 111 12469999999989999999999864 5666553
No 186
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.07 E-value=7.2e-06 Score=104.12 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 16 EGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred EEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999874
No 187
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.05 E-value=0.00013 Score=88.68 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=81.3
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc---CCcEEEeecCCCCCcC-----------eEEecCHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV---EFPVILKAAFGGGGRG-----------MRMVANKDAIEEN 236 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i---GyPvVVKP~~GgGGrG-----------V~iV~s~eeL~~a 236 (1427)
.-+.+|++++++|||+|++. .+.+.+|+.+.++++ ++|+|+|+.--.|||| |+++++ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 56788999999999999987 789999999999998 6999999995545444 667766 999999
Q ss_pred HHHHHHHH--HHcc---C--CCcEEEEeeccCCceEEEEEEeccc--ccEE
Q psy15244 237 FKRAQSEA--LASF---G--KDDMLVEKYIDRPRHIEVQILGDKY--GDVV 278 (1427)
Q Consensus 237 ~~~a~~ea--~~~f---g--~~~vlVEeyIeggreieVqvl~Dg~--G~vv 278 (1427)
+++..... .... | -..++|||.+..++|+-+.+..|.. |.++
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 98876531 1111 1 2358878878778999999999963 4454
No 188
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.03 E-value=9.6e-06 Score=100.64 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=58.4
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVL 1425 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i 1425 (1427)
|+|++|+|++||.|++||+|+++|.+|..++|.||.+|+|.+|++++|+ .|..|++|+++
T Consensus 127 g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 127 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999996 79999999877
No 189
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.01 E-value=2.8e-05 Score=85.63 Aligned_cols=165 Identities=21% Similarity=0.333 Sum_probs=101.1
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
-+.+|++++++|||+|++. .+.+++++.+.++.+|.| +||||---.||| ||.+++|++|+.++..+.......
T Consensus 4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 4678999999999999997 789999999999999875 799998767666 689999999999887765432110
Q ss_pred --ccC-----CCcEEEEeeccCCceEEEEEEecccccE-EEeeeecc--cc------ccccceEEEEccCCCCCHHHHHH
Q psy15244 247 --SFG-----KDDMLVEKYIDRPRHIEVQILGDKYGDV-VHLYERDC--SM------QRRYQKVIQIAPAQDMSVSVRDA 310 (1427)
Q Consensus 247 --~fg-----~~~vlVEeyIeggreieVqvl~Dg~G~v-v~l~erd~--s~------qr~~qk~ie~aPa~~l~~e~~~~ 310 (1427)
..| -..++||++++-.+|+-+.+..|...+. +.+....- .+ .+.......+-|...+++.
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g~~~~---- 157 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEGLTPY---- 157 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB--HH----
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCCCCHH----
Confidence 011 2478999999988999999998876543 33332211 11 1112233445565555543
Q ss_pred HHHHHHHHHHHcCCCCeE---EEEE-------EEcCCCcEEEEeeCC
Q psy15244 311 ITETSVRLAKSLGYSNAG---TVEF-------LLDKDDNFYFIEVNP 347 (1427)
Q Consensus 311 l~~~a~~l~~alg~~G~~---~VEf-------lvd~dG~~yfIEINp 347 (1427)
.+.+++..+|+.+.. -.+| +++ -..-++||||
T Consensus 158 ---~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~--~DatllEINP 199 (202)
T PF08442_consen 158 ---QAREIAKKLGLPGKLAEQLADILKKLYRLFRE--YDATLLEINP 199 (202)
T ss_dssp ---HHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHH--TTEEEEEEEE
T ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHHHHHHH--cCCcEEEecC
Confidence 456667777776421 1122 222 2378999998
No 190
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.91 E-value=9.2e-06 Score=84.47 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=51.0
Q ss_pred CceecCCCeEEEEEEec-CCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1358 GEIGAPMPGNIIEVKVK-VGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~-~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
....+.+.|.|+.+.+. +|++|++||++++||+|||..+|.||.+|+|.+++.+.-+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 34566899999999997 8999999999999999999999999999999999876544
No 191
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.89 E-value=4e-05 Score=93.86 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=64.9
Q ss_pred CCCCCCCceecCCCeEEEEEE-ecCCCEEecCCEEEEEEcC---------------------------------------
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVK-VKVGQQVKKNDVLIVMSVM--------------------------------------- 1391 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~-V~~Gd~V~~G~~l~~ieam--------------------------------------- 1391 (1427)
.++....+|.|+++|.|.+++ +++||.|++||+|+.|++-
T Consensus 118 ~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i 197 (409)
T PRK09783 118 YNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADI 197 (409)
T ss_pred ECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHH
Confidence 334456789999999999998 9999999999999999821
Q ss_pred ---------CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1392 ---------KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1392 ---------Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.-...|+||++|+|.+..+.+|+.|..|+.|++|.
T Consensus 198 ~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 198 RRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 02357999999999999999999999999999873
No 192
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.89 E-value=9.4e-05 Score=79.49 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCH-HHHHHHHHHHHHHHHHccCCCcEEEEeeccCCc-
Q psy15244 186 IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK-DAIEENFKRAQSEALASFGKDDMLVEKYIDRPR- 263 (1427)
Q Consensus 186 vp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~-eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggr- 263 (1427)
+|++. ...+.+++.+|.++.+. +|+||..|.||+||.++... ..+...++.+. ..+...+++|+||+.-+
T Consensus 12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~-----~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLT-----KNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-----TTTTS-EEEEE--GGGGG
T ss_pred CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-----hcCCccEEEEeccccccC
Confidence 35554 56789999999999998 99999999999999999874 34444444332 22346799999999544
Q ss_pred -eEEEEEEecccccEEEeeeec-----cccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC
Q psy15244 264 -HIEVQILGDKYGDVVHLYERD-----CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337 (1427)
Q Consensus 264 -eieVqvl~Dg~G~vv~l~erd-----~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d 337 (1427)
+.++-++ + |..++..-|- ...+.......+.+ .++++. .++++.....++.-|+. ...+|++-
T Consensus 84 GDkRii~~-n--G~~~~av~R~P~~gd~R~N~~~Gg~~~~~---~lt~~e-~~i~~~i~~~L~~~Gl~-f~GiDvig--- 152 (173)
T PF02955_consen 84 GDKRIILF-N--GEPSHAVRRIPAKGDFRSNLAAGGSAEPA---ELTERE-REICEQIGPKLREDGLL-FVGIDVIG--- 152 (173)
T ss_dssp -EEEEEEE-T--TEE-SEEEEE--SS-S---GGGTSCEEEE---E--HHH-HHHHHHHHHHHHHTT---EEEEEEET---
T ss_pred CCEEEEEE-C--CEEhHHeecCCCCCCceeeeccCCceeec---CCCHHH-HHHHHHHHHHHhhcCcE-EEEEeccc---
Confidence 3444443 2 3455433331 11111122222222 234333 34444444444444443 45688762
Q ss_pred CcEEEEeeCCCCCC
Q psy15244 338 DNFYFIEVNPRLQV 351 (1427)
Q Consensus 338 G~~yfIEINpRl~g 351 (1427)
+ |++|||.-=.+
T Consensus 153 ~--~l~EiNvtsp~ 164 (173)
T PF02955_consen 153 D--KLTEINVTSPT 164 (173)
T ss_dssp T--EEEEEE-SS--
T ss_pred c--ceEEEeccCch
Confidence 2 89999975443
No 193
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.79 E-value=0.0014 Score=81.22 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=29.1
Q ss_pred ceeEeecccccccchhhhhccccccccccccc
Q psy15244 613 KHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
+.+.|+|||+||+|||+.|+|.|+.|.+.+++
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~ 34 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACE 34 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHH
Confidence 46899999999999999999999999998744
No 194
>KOG0559|consensus
Probab=97.73 E-value=1.1e-05 Score=91.71 Aligned_cols=61 Identities=23% Similarity=0.420 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|++..|+.++||.|++.+.++.||..|...+|.||.+|+|++++|++||+|+.|+-|+.|+
T Consensus 87 G~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~ 147 (457)
T KOG0559|consen 87 GDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS 147 (457)
T ss_pred chHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEec
Confidence 6666799999999999999999999999999999999999999999999999999999886
No 195
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.72 E-value=5.2e-05 Score=73.81 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=49.0
Q ss_pred ecCCCeEEEEEEecC-CCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCee
Q psy15244 1361 GAPMPGNIIEVKVKV-GQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416 (1427)
Q Consensus 1361 ~APm~G~v~~v~V~~-Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V 1416 (1427)
...+.|+|..+.... |+.|++||++++||+||+..+|.||.+|+|.+++.+.++..
T Consensus 24 ~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 24 AQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred HHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 446789999866555 99999999999999999999999999999999988776654
No 196
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.69 E-value=0.0011 Score=80.02 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=83.3
Q ss_pred HHHHHHHHHhC-----CCCCCCCccccC-CCHHHHHHHHHh---cCCc-EEEeecCCCCCc----CeEEecCHHHHHHHH
Q psy15244 172 KVLARDAALKA-----DVPIIPGTTEPV-TDVDKVKEFCDE---VEFP-VILKAAFGGGGR----GMRMVANKDAIEENF 237 (1427)
Q Consensus 172 K~~~r~~a~~a-----GVpvp~~~~~~v-~s~eea~~~a~~---iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~ 237 (1427)
-+.+|++++++ |||+|.+. .+ .+.+++.+++++ ++.| +||||---.||| ||.++.|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 35678888887 99999987 45 899999999988 7775 699999888777 489999999999998
Q ss_pred HHHHHHHHHcc----CCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 238 KRAQSEALASF----GKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 238 ~~a~~ea~~~f----g~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
++......... .-..++||++++-.+|+-+.++.|.....+.
T Consensus 86 ~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii 131 (423)
T PLN02235 86 KERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSIS 131 (423)
T ss_pred HHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEE
Confidence 87654321000 1137899999998899999999987766643
No 197
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.67 E-value=8.6e-05 Score=88.48 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=32.4
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.||.+|.|.+++|++||.|++||+|+.|+.
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 45679999999999999999999999999999965
No 198
>KOG0557|consensus
Probab=97.53 E-value=0.00013 Score=86.59 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=60.1
Q ss_pred CCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCC-CeeCCCCEEEEE
Q psy15244 1363 PMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG-GQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G-~~V~~g~~L~~i 1425 (1427)
.|. |+|++|.-++||.+++||+||+||+.|-.+.+.++.+|.+.+|++.+| ..|..|.+|+.|
T Consensus 49 TMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaii 113 (470)
T KOG0557|consen 49 TMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAII 113 (470)
T ss_pred cccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEE
Confidence 465 999999999999999999999999999999999999999999999999 889999999976
No 199
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.52 E-value=0.00017 Score=86.53 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.++++|.|.+++|++||.|++||+|+.|+.
T Consensus 47 ~~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 47 DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eeEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 35679999999999999999999999999999976
No 200
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.51 E-value=0.00018 Score=84.87 Aligned_cols=68 Identities=32% Similarity=0.409 Sum_probs=60.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC---------------------------------------------
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--------------------------------------------- 1392 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--------------------------------------------- 1392 (1427)
..|.++.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a 127 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQA 127 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45888999999999999999999999999997610
Q ss_pred -------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1393 -------------------------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1393 -------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
-.+.|+||++|+|.++.+++|+.|..|++|+.|
T Consensus 128 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~I 185 (310)
T PRK10559 128 NNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVAL 185 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEE
Confidence 025799999999999999999999999999875
No 201
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.48 E-value=0.00045 Score=80.46 Aligned_cols=174 Identities=17% Similarity=0.347 Sum_probs=104.2
Q ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHhC-------CCCCCCCccccCC-CHHHHHHHH--HhcCCcEEEeecCCC---CC
Q psy15244 155 GLEFIGPAPNVLKTLGDKVLARDAALKA-------DVPIIPGTTEPVT-DVDKVKEFC--DEVEFPVILKAAFGG---GG 221 (1427)
Q Consensus 155 Gi~fiGps~eai~~~~DK~~~r~~a~~a-------GVpvp~~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~Gg---GG 221 (1427)
.+.++ -++++++.+.|...+.+.+.+. .|.+|++. .+. +.+++.+.. ..+.||+|+||.... .+
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 45544 5678899999999888888764 57788875 333 344444443 467899999999654 56
Q ss_pred cCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC-ceEEEEEEecccccEEEeeeec----ccc---ccc---
Q psy15244 222 RGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLYERD----CSM---QRR--- 290 (1427)
Q Consensus 222 rGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg-reieVqvl~Dg~G~vv~l~erd----~s~---qr~--- 290 (1427)
..|.+|.+.+.|.+. ..++++||||..+ .-+-|.+++|.. ++..|. .+. .+.
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~v----~~v~R~SLpn~~~~~~~~~~~~ 217 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDKV----FVVKRPSLPNVSSGKLDREEIF 217 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTEE----EEEEEE------SSS-TCGGCC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCEE----EEEECCCCCCCCcccccccccc
Confidence 789999999998752 3689999999965 678888887742 222221 000 000
Q ss_pred --cceE-----------EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-C-CcEEEEeeCCCCC
Q psy15244 291 --YQKV-----------IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-D-DNFYFIEVNPRLQ 350 (1427)
Q Consensus 291 --~qk~-----------ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-d-G~~yfIEINpRl~ 350 (1427)
+..+ ....+. .....-.+.+.+.|..+-++||+. .+++|++++. + |++|+|.||.=++
T Consensus 218 f~~~~vs~~~~~~~~~~~d~~~~-~~~~p~~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 218 FDFHQVSKLESSSDLSDLDKDPS-QVEMPPDELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CEGGGTCSTTTSSGGGSBSS-TT-TTTS--HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred eeccccCCccccCchhhcccCcc-cccCCCHHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 0000 000011 011112356788888888999996 8899999986 5 7899999999777
No 202
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.47 E-value=0.00013 Score=72.38 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=44.5
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
-+-|.|+.+.+ ++|+.|++||++++||+||+..+|.||.+|+|.+++.+..+
T Consensus 27 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 27 ENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred HhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 45677877766 56999999999999999999999999999999999655444
No 203
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.47 E-value=0.0052 Score=76.02 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=127.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.+.+ .|++.||.+.+. ......+.++.+++..++..+-..+|-.-. | ..
T Consensus 13 ~~~~~~~~~~~~~~~--~Gv~~ie~g~p~--------~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~------g----~~ 72 (430)
T PRK07028 13 LELDRAVEIAKEAVA--GGADWIEAGTPL--------IKSEGMNAIRTLRKNFPDHTIVADMKTMDT------G----AI 72 (430)
T ss_pred CCHHHHHHHHHHHHh--cCCcEEEeCCHH--------HHHhhHHHHHHHHHHCCCCEEEEEeeeccc------h----HH
Confidence 577899999999887 799999985321 112236778888887766554444442211 1 22
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.|.++|.|.+++.... +...+...++.+++.|. .+...+ + ++ .+ ..+.++++.+.|+|.|
T Consensus 73 ~v~~a~~aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~---~~~~g~-~-----s~----~t---~~e~~~~a~~~GaD~I 135 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA-DDSTIEDAVRAARKYGV---RLMADL-I-----NV----PD---PVKRAVELEELGVDYI 135 (430)
T ss_pred HHHHHHHcCCCEEEEecCC-ChHHHHHHHHHHHHcCC---EEEEEe-c-----CC----CC---HHHHHHHHHhcCCCEE
Confidence 6899999999999987543 33346778889999988 443321 1 22 11 1234677788999998
Q ss_pred EEccccCc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHH
Q psy15244 838 CLKDMAGL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVS 914 (1427)
Q Consensus 838 ~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~ 914 (1427)
.+. .|. ..+....+.++.+++.+ ++||.+|+ |....|+..++++||+.|=+.-. -.+.++..+.+.
T Consensus 136 ~~~--pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~G----GI~~~n~~~~l~aGAdgv~vGsa----I~~~~d~~~~~~ 204 (430)
T PRK07028 136 NVH--VGIDQQMLGKDPLELLKEVSEEV-SIPIAVAG----GLDAETAAKAVAAGADIVIVGGN----IIKSADVTEAAR 204 (430)
T ss_pred EEE--eccchhhcCCChHHHHHHHHhhC-CCcEEEEC----CCCHHHHHHHHHcCCCEEEEChH----HcCCCCHHHHHH
Confidence 765 232 12223456788888887 69999988 88999999999999998744322 233455555555
Q ss_pred HHHh
Q psy15244 915 CLEN 918 (1427)
Q Consensus 915 ~L~~ 918 (1427)
.|+.
T Consensus 205 ~l~~ 208 (430)
T PRK07028 205 KIRE 208 (430)
T ss_pred HHHH
Confidence 5543
No 204
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.44 E-value=0.00017 Score=85.11 Aligned_cols=70 Identities=30% Similarity=0.433 Sum_probs=61.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--------------------------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------------------------------------------- 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------------------------------------------- 1392 (1427)
...|.||.+|.|.+++|++||.|++||+|+.++.-.
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 457999999999999999999999999999996411
Q ss_pred ---------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1393 ---------------------------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1393 ---------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
-...|+||++|+|..+.+++|+.|.+|+.|+.|.
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 1247999999999999999999999999999763
No 205
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.43 E-value=0.001 Score=64.79 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|.-.-.+++++.+..--.- +|..+.. .......+.+.+ +..|.+.|+++|+++++|.+++|
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~-v~~aPGN--~G~~~~~~~~~~--------~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEE-VYVAPGN--PGTAELGKNVPI--------DITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEE-EEEEE----TTGGGTSEEE-S---------TT-HHHHHHHHHHTTESEEEES
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCE-EEEeCCC--HHHHhhceecCC--------CCCCHHHHHHHHHHcCCCEEEEC
Confidence 389999999666678999987643322 2222221 111122233332 24789999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHH
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKT 168 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~ 168 (1427)
.+.--. ..+++.+++.||+.+||+.++.++
T Consensus 70 PE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 70 PEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp SHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred ChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 742111 157899999999999999988764
No 206
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.42 E-value=0.0028 Score=72.01 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=105.3
Q ss_pred HHHHhCCHHHHHHHHHhCC--CCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHH
Q psy15244 165 VLKTLGDKVLARDAALKAD--VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQS 242 (1427)
Q Consensus 165 ai~~~~DK~~~r~~a~~aG--Vpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ 242 (1427)
....+.||...|+.+++.+ ...||-. +..++++++.- ..+.-++||||..|+|+..+....+.-+...+...+..
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~~--~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~ 90 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDIDF--DSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR 90 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhhh--hcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence 3457889999999999886 3344433 35566666532 35567799999999998777766554444333333221
Q ss_pred HHHHccC-----------CCcEEEEeeccCCc-----eEEEEEEecccccEEE--------------eeeeccccccccc
Q psy15244 243 EALASFG-----------KDDMLVEKYIDRPR-----HIEVQILGDKYGDVVH--------------LYERDCSMQRRYQ 292 (1427)
Q Consensus 243 ea~~~fg-----------~~~vlVEeyIeggr-----eieVqvl~Dg~G~vv~--------------l~erd~s~qr~~q 292 (1427)
-....++ ...+++|++|+... .+-+.++. |++.. ++.++-....-..
T Consensus 91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~ 167 (239)
T PF14305_consen 91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRS 167 (239)
T ss_pred HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeCCCCCeEEEEECcccCCCcccc
Confidence 1111111 36899999998542 34444443 22222 1222111111000
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
..- .....--++..++|.+.|.++++.+.| ..|||...+ |++||-|+-..++++
T Consensus 168 ~~~--~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~~-~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 168 DYP--PDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNVD-GKIYFGELTFTPGAG 221 (239)
T ss_pred CCC--CCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEeC-CcEEEEeeecCCCCc
Confidence 000 111112356668999999999988665 689998774 669999999998865
No 207
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=97.40 E-value=0.0028 Score=77.80 Aligned_cols=33 Identities=42% Similarity=0.624 Sum_probs=30.0
Q ss_pred cceeEeecccccccchhhhhccccccccccccc
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
++.+.|+|||+||+|||++|||.|+.|+..+++
T Consensus 10 ~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~ 42 (468)
T PRK12581 10 QQQVAITETVLRDGHQSLMATRLSIEDMLPVLT 42 (468)
T ss_pred CCceEEEECCccchhhhccccCCCHHHHHHHHH
Confidence 357999999999999999999999999998755
No 208
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.39 E-value=0.00021 Score=60.95 Aligned_cols=36 Identities=47% Similarity=0.600 Sum_probs=31.8
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCc
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKT 1393 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKm 1393 (1427)
..|.||++|+|.+|+|++||.|++||+|++|+....
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 368899999999999999999999999999987543
No 209
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.36 E-value=0.00031 Score=85.56 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.++.+|.|.++.|++||.|++||+|+.|+.
T Consensus 60 ~~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 60 NQVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred eEEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 35678999999999999999999999999999964
No 210
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.33 E-value=0.00035 Score=71.53 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=52.2
Q ss_pred ecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE---ecCCCeeC---CCC-EEEEEe
Q psy15244 1361 GAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF---VEVGGQVA---QND-LVVVLD 1426 (1427)
Q Consensus 1361 ~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~---v~~G~~V~---~g~-~L~~i~ 1426 (1427)
.....|.|..+.. +.|++|++||++++||+||...+|.||++|+|.+++ ....+.++ .|+ -|++|+
T Consensus 32 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~ 105 (127)
T PRK01202 32 AQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIK 105 (127)
T ss_pred HHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEE
Confidence 3457788877754 569999999999999999999999999999999994 44445565 444 677664
No 211
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.31 E-value=0.00035 Score=83.33 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 4579999999999999999999999999999974
No 212
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.30 E-value=0.00054 Score=83.46 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=60.7
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
....|.++++|.|.++.|++||.|++||+|+.|+.-.
T Consensus 62 ~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~ 141 (385)
T PRK09578 62 RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDY 141 (385)
T ss_pred eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3568999999999999999999999999999997521
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCC--CEEEEEe
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQN--DLVVVLD 1426 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g--~~L~~i~ 1426 (1427)
-.+.|+||++|+|.+..+++|+.|..| .+|+.|.
T Consensus 142 ~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 142 TEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 024899999999999999999999986 4777653
No 213
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.29 E-value=0.001 Score=61.08 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=52.5
Q ss_pred ccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1289 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1289 v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.+++.|+..+|.+++|+.+ +. |..-..++-+ .....|.||++|+|
T Consensus 5 v~a~~~G~i~~~~v~~Gd~V-----------~~-g~~l~~ve~~----------------------K~~~~I~a~~~G~V 50 (71)
T PRK05889 5 VRAEIVASVLEVVVNEGDQI-----------GK-GDTLVLLESM----------------------KMEIPVLAEVAGTV 50 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEEec----------------------cceeEEeCCCCEEE
Confidence 67889999999999999997 22 3222222211 13567999999999
Q ss_pred EEEEecCCCEEecCCEEEEEE
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.++++++||.|+.|++|++|+
T Consensus 51 ~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 51 SKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEEEeCCCCEECCCCEEEEEC
Confidence 999999999999999999874
No 214
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.16 E-value=0.00061 Score=68.15 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=42.3
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
-+-|.|+.+.. +.|+.|++||++++||+||+-.+|.||++|+|.+++-
T Consensus 29 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~ 77 (114)
T PRK00624 29 ENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT 77 (114)
T ss_pred HhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 45677887776 5599999999999999999999999999999999853
No 215
>KOG0558|consensus
Probab=97.16 E-value=0.00023 Score=80.77 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=58.9
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
+|.+|+|++||.|++=|+||++++.|...+|++-++|+|++++-+++|....|++|+.+++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~ev 140 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEV 140 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeee
Confidence 6889999999999999999999999999999999999999999999999999999998874
No 216
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.14 E-value=0.035 Score=65.72 Aligned_cols=226 Identities=9% Similarity=0.056 Sum_probs=141.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++++.++...+ .|+..|-+-||..++....+ -.+-++.|++..|+..+..+.++--.. +.....-..
T Consensus 34 ~~ls~eeI~~~~~~~~~--~G~~~i~l~gg~~~~~~~~~----~~~i~~~Ik~~~~~i~~~~~s~~e~~~-~~~~~g~~~ 106 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVA--KGATEVCIQGGLNPQLDIEY----YEELFRAIKQEFPDVHIHAFSPMEVYF-LAKNEGLSI 106 (309)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCCCHHH----HHHHHHHHHHHCCCceEEecCHHHHHH-HHHHcCCCH
Confidence 46899999999988877 69998888776544211111 124456777777777776665421000 000000113
Q ss_pred HHHHHHHHhcCCCEEE-E-ecc------------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 756 GAFCRLASQAGIDIFR-V-FDP------------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~r-i-f~~------------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
.+.+++.+++|++.+. + +.. -...+...++++.+++.|+ .+..++.+. -| -+.+.
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi---~~~s~~iiG----~~----Et~ed 175 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI---PTTATMMFG----HV----ENPEH 175 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CceeeEEec----CC----CCHHH
Confidence 5568888899999774 1 111 1133455688999999999 666665544 33 47778
Q ss_pred HHHHHHHHHHCCCCEEE----E------cccc-------CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHH
Q psy15244 822 YEDLAKQLVESGAQVLC----L------KDMA-------GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~----i------~Dt~-------G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~l 883 (1427)
.++.+..+.+.+.+... + ++|- .-++|.+..+++...|=-+|+++ |..-. +++|.- ...
T Consensus 176 ~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~ 252 (309)
T TIGR00423 176 RVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQ 252 (309)
T ss_pred HHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHH
Confidence 88888888887765211 1 3442 23677888888888887777544 43333 445533 247
Q ss_pred HHHHhcCCEEEecc-----ccCCCCCC--CCcHHHHHHHHHhCCCC
Q psy15244 884 ACVKAGADIVDVAA-----DSMSGICS--QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 884 aAi~AGad~VD~av-----~GmG~~tg--n~~lE~vv~~L~~~g~~ 922 (1427)
.|+.+||+-+++|+ +...|... .++.++++..++..|+.
T Consensus 253 ~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~ 298 (309)
T TIGR00423 253 VALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV 298 (309)
T ss_pred HHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 88999999999876 44444222 35789999988877654
No 217
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.13 E-value=0.016 Score=62.55 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=96.7
Q ss_pred CHHHHHHhCCHHHHHHHH----HhC---CCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHH
Q psy15244 162 APNVLKTLGDKVLARDAA----LKA---DVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234 (1427)
Q Consensus 162 s~eai~~~~DK~~~r~~a----~~a---GVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~ 234 (1427)
|.+++-.+.||--....| ++. .+|..+-+ ...+..+. ...-.||+|||--.+.+|.|=.+|++..++.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~q 76 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQ 76 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHHH
Confidence 455666677774433222 333 45655543 23344432 3345799999999999999999999999888
Q ss_pred HHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec-cccc--cccceEEEEccCCCCCHHHHHHH
Q psy15244 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD-CSMQ--RRYQKVIQIAPAQDMSVSVRDAI 311 (1427)
Q Consensus 235 ~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd-~s~q--r~~qk~ie~aPa~~l~~e~~~~l 311 (1427)
+...-.... +.-+-+|.||+....+.+|-+++.. .+...+. +.-- .-...+.|..|. + ++.
T Consensus 77 Di~sll~~~------~~Y~T~EPfId~kyDirvqkIG~~y---kA~~R~sis~nWK~N~gsa~lEqi~~---~----~ry 140 (203)
T PF02750_consen 77 DIASLLAIT------KDYATTEPFIDAKYDIRVQKIGNNY---KAYMRTSISGNWKANTGSAMLEQIAM---T----ERY 140 (203)
T ss_dssp HHHHHHHHH------TS-EEEEE---EEEEEEEEEETTEE---EEEEEEESSSTSSTTSSSEEEEEE----------HHH
T ss_pred HHHHHHHhc------CceEEeeccccceeEEEEEEEcCeE---EEEEEccccccccccccchheeecCC---C----hHH
Confidence 765443321 4567899999977889998887643 3322221 1111 112334444432 2 455
Q ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC---CCCCchh
Q psy15244 312 TETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP---RLQVEHT 354 (1427)
Q Consensus 312 ~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp---Rl~ge~~ 354 (1427)
...+..+.+.+|=--.+.+|.+..+||+-|++|+|- .+-|+|.
T Consensus 141 k~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m~L~g~~q 186 (203)
T PF02750_consen 141 KLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQ 186 (203)
T ss_dssp HHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT----GGGH
T ss_pred HHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcccccchhH
Confidence 567777788885445899999999999999999994 3435543
No 218
>PRK12784 hypothetical protein; Provisional
Probab=97.12 E-value=0.0023 Score=57.92 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=63.6
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-eeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-LIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||.-|+|-+++|.+++.|-+-++|+.|+.|.-+. .|.--++|-|..+.|.+||.|..+.+|+.++
T Consensus 6 e~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 46889999999999999999999999999999997554 4788999999999999999999999999876
No 219
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.12 E-value=0.00089 Score=81.92 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
....|.++.+|.|.++.|++||.|++||+|+.|+.-.
T Consensus 64 ~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~ 143 (397)
T PRK15030 64 RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEY 143 (397)
T ss_pred EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567999999999999999999999999999997421
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCE--EEEE
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQNDL--VVVL 1425 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~--L~~i 1425 (1427)
-.+.|+||++|+|.+..+++|+.|..|+. |+.|
T Consensus 144 d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 144 DQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 12579999999999999999999999984 5554
No 220
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.11 E-value=0.0011 Score=80.23 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.5
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
....|.||++|.|.++.|++||.|++||+|+.|+.
T Consensus 60 ~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 60 RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 45679999999999999999999999999999986
No 221
>PRK06748 hypothetical protein; Validated
Probab=97.11 E-value=0.0017 Score=61.11 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred eccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeE
Q psy15244 1288 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGN 1367 (1427)
Q Consensus 1288 ~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~ 1367 (1427)
.+.++|.|...+|.+++||.+ .. |.--+.+|-. +. ....|.||..|+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V-----------~~-gd~l~~IETM--------------------dK-~~~ei~Ap~~G~ 52 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYV-----------YE-WEKLALIETI--------------------DK-QKVEIKVGISGY 52 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEE-----------CC-CCEEEEEEcC--------------------CC-ceEEEecCCCEE
Confidence 467889999999999999997 22 3322222210 11 123799999999
Q ss_pred EEEEEecCCCEEecCCEEEEEEc
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
|.+++|++||.|+.||+|+.|+.
T Consensus 53 v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 53 IESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEEEeCCCCEECCCCEEEEEEC
Confidence 99999999999999999999974
No 222
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.09 E-value=0.0005 Score=70.36 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=44.5
Q ss_pred cCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1362 APMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1362 APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
....|.|..+.. ++|++|++||++++|||||+-.+|.||++|+|.+++-..-+
T Consensus 32 ~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 32 QDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred hhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 457777766654 57999999999999999999999999999999998755433
No 223
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.07 E-value=0.0019 Score=59.08 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=52.1
Q ss_pred eccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeE
Q psy15244 1288 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGN 1367 (1427)
Q Consensus 1288 ~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~ 1367 (1427)
.+.+++.|+.++|.++.|+.+ .. |..-..++.. .....|.||..|+
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V-----------~~-g~~l~~ve~~----------------------k~~~~v~s~~~G~ 48 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTV-----------EE-GQDVVILESM----------------------KMEIPIVAEEAGT 48 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEEcC----------------------CCcceEeCCCCEE
Confidence 356789999999999999986 22 3222222111 1356799999999
Q ss_pred EEEEEecCCCEEecCCEEEEEE
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.++++++||.|+.||+|+.||
T Consensus 49 v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 49 VKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEecCCCEECCCCEEEEEC
Confidence 9999999999999999999986
No 224
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.06 E-value=0.012 Score=67.87 Aligned_cols=184 Identities=15% Similarity=0.062 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.++-++++..|.+ .|++.||+|-|.. =.++.|-|.. +-|+.++++|+. +++++-.+
T Consensus 27 ~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm------ 97 (263)
T CHL00200 27 DIVITKKALKILDK--KGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIF------ 97 (263)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEE------
Confidence 45778899999998 7999999985433 2233455444 457888888865 67774322
Q ss_pred ccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-. .-=++.|++.++++|+|.+-|-|-. ++......+.+++.|+ .. +.+. +| .++.+.+.
T Consensus 98 -~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP--~ee~~~~~~~~~~~gi---~~---I~lv----~P---tT~~eri~ 161 (263)
T CHL00200 98 -TYYNPVLHYGINKFIKKISQAGVKGLIIPDLP--YEESDYLISVCNLYNI---EL---ILLI----AP---TSSKSRIQ 161 (263)
T ss_pred -ecccHHHHhCHHHHHHHHHHcCCeEEEecCCC--HHHHHHHHHHHHHcCC---CE---EEEE----CC---CCCHHHHH
Confidence 343311 1125789999999999999888864 4778888899999999 22 2222 55 24556555
Q ss_pred HHHHHHHHCCCCEEEEccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++..... +-.++..=++|. ..|..+.++++.+|+.. ++||.+ .+|.. ..++-...++|||.|
T Consensus 162 ~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 162 KIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 555443211 222333555665 45788999999999987 889887 45666 345666778999975
No 225
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.04 E-value=0.015 Score=66.76 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhccc-----cChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLK-----ECPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~-----e~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-|.+ -.++.|-|. ++-++.++.+|+..+++++-.+.
T Consensus 22 ~~~~~~~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~----- 94 (256)
T TIGR00262 22 TLETSLEIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT----- 94 (256)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE-----
Confidence 45677899999998 7999999986542 122344443 34477788888765667754322
Q ss_pred ccccCC-CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNY-SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~-~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
|.|- -.-=.++|++.++++|++.+-+.|-. .+.....++.+++.|. .... . .+| .++.+.+.
T Consensus 95 --Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl---~~i~---l----v~P---~T~~eri~ 157 (256)
T TIGR00262 95 --YYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGV---KPIF---L----VAP---NADDERLK 157 (256)
T ss_pred --eccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCC---cEEE---E----ECC---CCCHHHHH
Confidence 3220 01124679999999999998888754 4678888999999998 3221 1 145 35566665
Q ss_pred HHHHHHHHCCC-CEEEEccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESGA-QVLCLKDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Ga-d~i~i~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++.. .|. -.++.....|.- .+..+.++++.+|+.. +.||.+ +.|.. -.++-.++++|||.|
T Consensus 158 ~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~v----gfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 158 QIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYS-AKPVLV----GFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc-CCCEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence 555532 222 233445667762 4566999999999986 667655 34444 557778899999976
No 226
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.04 E-value=0.0011 Score=81.61 Aligned_cols=70 Identities=27% Similarity=0.383 Sum_probs=60.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
+...|.++++|.|.+++|++||.|++||+|+.|..-.
T Consensus 86 ~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~l 165 (415)
T PRK11556 86 NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQEL 165 (415)
T ss_pred eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 5678999999999999999999999999999995410
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCCC--EEEEE
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQND--LVVVL 1425 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~--~L~~i 1425 (1427)
-...|+||++|+|..+.+++|+.|..|+ .|+.|
T Consensus 166 d~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 166 DAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 1348999999999999999999999985 56554
No 227
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.01 E-value=0.0012 Score=80.55 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=59.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--------------------------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------------------------------------------- 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------------------------------------------- 1392 (1427)
...|.++.+|.|.++.|++||.|++||+|+.|+.-.
T Consensus 61 ~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d 140 (385)
T PRK09859 61 VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYD 140 (385)
T ss_pred EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 457999999999999999999999999999997420
Q ss_pred ---------------------------ceeeeecCCCeEEEEEEecCCCeeCCCC--EEEEE
Q psy15244 1393 ---------------------------TETLIHASADGVVKEIFVEVGGQVAQND--LVVVL 1425 (1427)
Q Consensus 1393 ---------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~--~L~~i 1425 (1427)
-.+.|+||++|+|.+..+++|+.|..|+ +|+.|
T Consensus 141 ~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 141 TARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1258999999999999999999999984 57655
No 228
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.00 E-value=0.0012 Score=56.30 Aligned_cols=32 Identities=38% Similarity=0.657 Sum_probs=30.4
Q ss_pred eeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1395 TLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1395 ~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||.+|+|.+++|++|+.|++||+|++|+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld 34 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLD 34 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEEC
Confidence 57999999999999999999999999999986
No 229
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=96.99 E-value=0.03 Score=67.13 Aligned_cols=220 Identities=11% Similarity=0.054 Sum_probs=140.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccCh-HHHHHHHHHhCCCCceeeeeccc-----ccccccC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECP-WERLAELRELIPNIPFQMILRGN-----SLVGYSN 749 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p-~erl~~lr~~~p~~~~qml~Rg~-----n~vgy~~ 749 (1427)
..++.+++++.++.+.+ .|+..+-+.||...+. ..+- .+-++.+++..|++.+..+.++. ...|+.
T Consensus 70 ~~ls~eei~~~~~~~~~--~G~~~i~l~gG~~p~~-----~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~- 141 (340)
T TIGR03699 70 YVLSVEEILQKIEELVA--YGGTQILLQGGVNPDL-----GLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLS- 141 (340)
T ss_pred cCCCHHHHHHHHHHHHH--cCCcEEEEecCCCCCC-----CHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCC-
Confidence 35899999999999887 7999888876643221 1111 13456777777766654433220 001221
Q ss_pred CCcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
.++.+++.+++|++.+.- ...++ +.+...++++.++++|+ .+...+.+. .
T Consensus 142 -----~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi---~v~~~~iiG-----l--- 205 (340)
T TIGR03699 142 -----LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL---PTTATMMFG-----H--- 205 (340)
T ss_pred -----HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CccceeEee-----C---
Confidence 256688888999987652 12221 34456788999999999 555555444 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE----------cccc----CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCL----------KDMA----GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVA 880 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i----------~Dt~----G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~A 880 (1427)
.-+.+..++.+..+.+.+.+.+.+ ++|- ....|.+..+.+...|--+|+++ |..-. ...| ..
T Consensus 206 gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g--~~ 282 (340)
T TIGR03699 206 VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQG--KE 282 (340)
T ss_pred CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccC--hH
Confidence 356777888888888887764221 2332 24678889999988888788632 22222 2233 33
Q ss_pred HHHHHHHhcCCEEEecc--ccCCCCCCCCc---HHHHHHHHHhCCCC
Q psy15244 881 TTLACVKAGADIVDVAA--DSMSGICSQPA---MGTIVSCLENTDKR 922 (1427)
Q Consensus 881 n~laAi~AGad~VD~av--~GmG~~tgn~~---lE~vv~~L~~~g~~ 922 (1427)
....|+.+||+-+++++ ..+--.+|.+. .++++.+++..|+.
T Consensus 283 ~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g~~ 329 (340)
T TIGR03699 283 VGQLALHFGANDFGSTMLEENVVAAAGATHRASREEIIRIIREAGFI 329 (340)
T ss_pred HHHHHHhcCCccCCCccccccccccCCCCCCCCHHHHHHHHHHcCCC
Confidence 45678999999988877 35555566665 68888888887654
No 230
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.92 E-value=0.0019 Score=67.27 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=56.4
Q ss_pred ceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCC
Q psy15244 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMP 1365 (1427)
Q Consensus 1286 ~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~ 1365 (1427)
.-.|.++|.|..|...++.||.+ .. |+.-..+|- -...+.|.||..
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V-----------~~-Gq~l~IiEA----------------------MKmeneI~A~~~ 115 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTV-----------KA-GQTLAIIEA----------------------MKMENEIEAPAD 115 (140)
T ss_pred CceEecCcceEEEEEeeccCCEE-----------cC-CCEEEEEEe----------------------eeccceecCCCC
Confidence 45789999999999999999997 33 332222220 014678999999
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
|+|.+|+|++||.|+.||+|++|+.
T Consensus 116 G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 116 GVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cEEEEEEecCCCccCCCCEEEEecC
Confidence 9999999999999999999999973
No 231
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.83 E-value=0.0043 Score=72.74 Aligned_cols=44 Identities=30% Similarity=0.509 Sum_probs=25.5
Q ss_pred cEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC
Q psy15244 210 PVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP 262 (1427)
Q Consensus 210 PvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg 262 (1427)
-+|+||..++.|+|++++++.+++... .......++||+||++|
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCC
Confidence 489999999999999999999887753 12236799999999975
No 232
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.79 E-value=0.004 Score=70.00 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...-|+||.+|.+ +..++.||.|+|||+|+.++. ++|+||.+|+|. =.+..|-.|.+|.-|++|+
T Consensus 163 ~Er~IrAp~~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dID 227 (256)
T TIGR03309 163 HERVLRAPADGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVD 227 (256)
T ss_pred ceEEEECCCCeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEEC
Confidence 3456999999954 559999999999999999986 799999999988 5688999999999998875
No 233
>PRK07360 FO synthase subunit 2; Reviewed
Probab=96.70 E-value=0.12 Score=62.78 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=141.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhh-hhccccChHHHHHHHHHhCCCCceeeeec-----ccccccccC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC-LKFLKECPWERLAELRELIPNIPFQMILR-----GNSLVGYSN 749 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~-~rfl~e~p~erl~~lr~~~p~~~~qml~R-----g~n~vgy~~ 749 (1427)
.+++.+++++.|+...+ .|+..+-+.||-..+-. ..++ .+.++.+++..|++.+.++.. ..+..|
T Consensus 89 y~ls~eeI~~~a~~a~~--~G~~~i~l~~G~~p~~~~~e~~----~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G--- 159 (371)
T PRK07360 89 FWLTIAEILEKAAEAVK--RGATEVCIQGGLHPAADSLEFY----LEILEAIKEEFPDIHLHAFSPMEVYFAAREDG--- 159 (371)
T ss_pred eeCCHHHHHHHHHHHHh--CCCCEEEEccCCCCCCCcHHHH----HHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC---
Confidence 46999999999999988 79999998776332111 1111 244667777777766554311 000112
Q ss_pred CCcchHHHHHHHHHhcCCCEEE--------------EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFR--------------VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~r--------------if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
...++.+++.+++|++.+. ++-..-+.+.-.++++.++++|+ .+..++.+. -
T Consensus 160 ---~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl---~~~sg~i~G----~---- 225 (371)
T PRK07360 160 ---LSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGL---PTTSTMMYG----H---- 225 (371)
T ss_pred ---CCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CceeeEEee----C----
Confidence 2235568888899999884 11112244566788999999999 666665554 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEE---------ccccCc---CCHHHHHHHHHHHHHHcCC--ceEEEeecCCc
Q psy15244 816 KYSLNYYEDLAKQLVESGAQV------LCL---------KDMAGL---LKPTAAKLLIGSFREKYPN--ILIHVHTHDMA 875 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~------i~i---------~Dt~G~---l~P~~~~~lv~~lr~~~p~--ipi~~H~Hnd~ 875 (1427)
.-+.+..++.+..+.+.+.+. |-+ .++..+ ..|.+..+.|...|=-+|+ +.|-.-. .++
T Consensus 226 gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~l 304 (371)
T PRK07360 226 VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKL 304 (371)
T ss_pred CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eee
Confidence 257788888888888887655 322 232222 3677778888888877787 3343332 234
Q ss_pred chHHHHHHHHHHhcCCEEEecccc------CCCCCC-CCcHHHHHHHHHhCCCCC
Q psy15244 876 GTGVATTLACVKAGADIVDVAADS------MSGICS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av~G------mG~~tg-n~~lE~vv~~L~~~g~~t 923 (1427)
|.. ....|+.+||+.+.+++.+ -|..+. .++.+++...++..|+..
T Consensus 305 g~~--~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~ 357 (371)
T PRK07360 305 GLK--LAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIP 357 (371)
T ss_pred CHH--HHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCce
Confidence 433 3466899999999888754 222222 258899999999887653
No 234
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=96.66 E-value=0.1 Score=62.82 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=140.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccCC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSNY 750 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~~ 750 (1427)
.+++.+++++.++.+.+ .|+..|=+.||..++....++ .+-++.|++..|+..+..+.+. ...+|.
T Consensus 68 y~ls~eeI~e~~~~~~~--~G~~~i~l~gG~~p~~~~~~~----~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~--- 138 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWK--AGATEVCIQGGIHPDLDGDFY----LDILRAVKEEVPGMHIHAFSPMEVYYGARNSGL--- 138 (343)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCHHHH----HHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC---
Confidence 46899999999999888 699888776664322111111 2456778887777776554211 011222
Q ss_pred CcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
...+.+++.+++|++.+.. ...++ ..+.-.++++.++++|+ .+...+.+. -+
T Consensus 139 ---~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi---~v~s~~i~G----~~---- 204 (343)
T TIGR03551 139 ---SVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI---PTTATIMYG----HV---- 204 (343)
T ss_pred ---CHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---cccceEEEe----cC----
Confidence 2356688888999997752 12222 34455788999999999 665555543 22
Q ss_pred CCHHHHHHHHHHHHHCCCCE------EEEc----ccc--------CcCCHHHHHHHHHHHHHHcCCc--eEEEeecCCcc
Q psy15244 817 YSLNYYEDLAKQLVESGAQV------LCLK----DMA--------GLLKPTAAKLLIGSFREKYPNI--LIHVHTHDMAG 876 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~------i~i~----Dt~--------G~l~P~~~~~lv~~lr~~~p~i--pi~~H~Hnd~G 876 (1427)
-+.+..++.+..+.+++.+. +-+. .|- ..+.|.++.++|...|=-+|+. .|..-. .++|
T Consensus 205 Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~ 283 (343)
T TIGR03551 205 ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLG 283 (343)
T ss_pred CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccC
Confidence 45677777777777766542 2221 321 2357888999998888777864 444444 3445
Q ss_pred hHHHHHHHHHHhcCCEEEecccc-----CCCC-CC-CCcHHHHHHHHHhCCCCC
Q psy15244 877 TGVATTLACVKAGADIVDVAADS-----MSGI-CS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~G-----mG~~-tg-n~~lE~vv~~L~~~g~~t 923 (1427)
.. ....|+.+||+-+++|+.. ..|. ++ ..+.++++...+..|+.+
T Consensus 284 ~~--~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 284 KK--LAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred HH--HHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 43 3478899999999988633 3332 21 236788998888877654
No 235
>PLN02591 tryptophan synthase
Probab=96.65 E-value=0.053 Score=62.01 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-+.. -.++.|-|.. +-|+.++++|+. +++++-++
T Consensus 14 ~~e~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm------ 84 (250)
T PLN02591 14 DLDTTAEALRLLDA--CGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLF------ 84 (250)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEE------
Confidence 45778899999998 7999999985433 2223444443 357777888854 56665432
Q ss_pred ccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|.. .-=+++|++.++++|+|-+-|-|- .++......+.+++.|+ . .|++. +| .++.+.+.
T Consensus 85 -~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl---~---~I~lv----~P---tt~~~ri~ 148 (250)
T PLN02591 85 -TYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGI---E---LVLLT----TP---TTPTERMK 148 (250)
T ss_pred -ecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCC---e---EEEEe----CC---CCCHHHHH
Confidence 343321 113678999999999999988875 35888889999999998 2 23333 34 24455555
Q ss_pred HHHHHHHHCC-CCEEEEccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESG-AQVLCLKDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~G-ad~i~i~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++.. .| +-.|+..-++|. ..|..+.++++.+|+.. ++||-+ -+|.. -.++-+..+.|||.|
T Consensus 149 ~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 149 AIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 554442 12 223334556665 45788999999999974 888765 23333 346667778889875
No 236
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.60 E-value=0.1 Score=57.60 Aligned_cols=172 Identities=20% Similarity=0.178 Sum_probs=112.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++..++++.|.+ ++..+|++.+ | ....-.+-++.+++..++.++-..+. ...++ ..
T Consensus 10 ~~~~~~~~~~~~l~~---~i~~ieig~~--~------~~~~g~~~i~~i~~~~~~~~i~~~~~-------v~~~~---~~ 68 (202)
T cd04726 10 LDLEEALELAKKVPD---GVDIIEAGTP--L------IKSEGMEAVRALREAFPDKIIVADLK-------TADAG---AL 68 (202)
T ss_pred CCHHHHHHHHHHhhh---cCCEEEcCCH--H------HHHhCHHHHHHHHHHCCCCEEEEEEE-------ecccc---HH
Confidence 567888999999998 4999999532 2 12333567888888877776544322 11222 34
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.++++|.|.+-+-...+. +.+...++.+++.|. .+...+. +| .|+....+ +...|+|.+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~---~~~v~~~------~~----~t~~e~~~----~~~~~~d~v 130 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKYGK---EVQVDLI------GV----EDPEKRAK----LLKLGVDIV 130 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHcCC---eEEEEEe------CC----CCHHHHHH----HHHCCCCEE
Confidence 678899999999887775543 667888999999988 4433211 22 44444432 566799988
Q ss_pred EEc-----cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 838 CLK-----DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 838 ~i~-----Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+- .+.| .....+.++.+++. +++||..=. |....|.-.++++|||.+=+.
T Consensus 131 ~~~~~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 131 ILHRGIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred EEcCcccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEEEe
Confidence 772 2222 12344556666655 477776654 555678899999999987443
No 237
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.58 E-value=0.1 Score=59.78 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=115.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCc--------hhh-hhhccccChHHHHHHHHHhCCCCceeeeeccccccccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAV--------SHT-CLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYS 748 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------fd~-~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~ 748 (1427)
-+.++..+++..+++ . ++.||++-+.. +.. +.+.+...-++.++.+|+. .+.++-++..- .
T Consensus 15 p~~~~~~~~~~~l~~--~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-~~~Pl~lM~y~------n 84 (244)
T PRK13125 15 PNVESFKEFIIGLVE--L-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-VSVPIILMTYL------E 84 (244)
T ss_pred CCHHHHHHHHHHHHh--h-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-CCCCEEEEEec------c
Confidence 466888999999988 5 99999974322 111 1222222224566777754 46665322211 1
Q ss_pred CCCcchHHHHHHHHHhcCCCEEEEeccC-ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 749 NYSPAEVGAFCRLASQAGIDIFRVFDPL-NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 749 ~~~~nvv~~~v~~a~~~Gid~~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
++-.+ ...|++.+.++|+|.+-+-+.. ...+.+...++.+++.|+ .+-..+ +| .++.+.+..+++
T Consensus 85 ~~~~~-~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl---~~~~~v-------~p---~T~~e~l~~~~~ 150 (244)
T PRK13125 85 DYVDS-LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGL---KPVFFT-------SP---KFPDLLIHRLSK 150 (244)
T ss_pred hhhhC-HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCC---CEEEEE-------CC---CCCHHHHHHHHH
Confidence 12222 5678999999999999887643 225678889999999999 443322 44 345555554444
Q ss_pred HHHHCCCCEEEE--ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcch-HHHHHHHHHHhcCCEEE
Q psy15244 828 QLVESGAQVLCL--KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT-GVATTLACVKAGADIVD 894 (1427)
Q Consensus 828 ~l~~~Gad~i~i--~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl-A~An~laAi~AGad~VD 894 (1427)
. .-..+++ .-..|.-.+..+.+.++.+|+..++.+|.+ +.|. ...++-.++++|||.+=
T Consensus 151 ~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~vv 212 (244)
T PRK13125 151 L----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGVV 212 (244)
T ss_pred h----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEEE
Confidence 3 3334432 222455567888899999998876666653 4566 44566677899999763
No 238
>PRK07051 hypothetical protein; Validated
Probab=96.54 E-value=0.0093 Score=56.09 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.4
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||.+|+|.++.+++|+.|+.||+|+.++
T Consensus 47 ~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 47 FTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 346899999999999999999999999999986
No 239
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=96.50 E-value=0.00097 Score=73.05 Aligned_cols=50 Identities=32% Similarity=0.612 Sum_probs=41.0
Q ss_pred Cccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccc
Q psy15244 1121 EPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMAC 1171 (1427)
Q Consensus 1121 ~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~ 1171 (1427)
.+.| ++.+|||+|..+|.+.+++||+++.|||+.||.++++|||+. ++.+
T Consensus 137 ~dedvlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~-v~l~ 187 (196)
T PF02436_consen 137 TDEDVLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEIS-VELE 187 (196)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEE-EESC
T ss_pred CHHHHHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEE-EEEC
Confidence 3345 778899999999999999999999999999999999999996 4444
No 240
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.41 E-value=0.046 Score=57.80 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=53.7
Q ss_pred ceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCC
Q psy15244 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMP 1365 (1427)
Q Consensus 1286 ~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~ 1365 (1427)
...|.+++.|+..+|.++.||.+ .. |..-+.++.. .....|.||..
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V-----------~~-Gq~l~~iEam----------------------Kme~eI~Ap~~ 129 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQV-----------KV-GQGLLILEAM----------------------KMENEIPAPKD 129 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEE-----------cC-CCEEEEEeec----------------------ccceEEecCCC
Confidence 45789999999999999999997 22 3322222210 02357999999
Q ss_pred eEEEEEEecCCCEEecCCEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
|+|.++++++||.|+.||+|+.|
T Consensus 130 G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 130 GVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEEEEEcCCCCEECCCCEEEEe
Confidence 99999999999999999999986
No 241
>PRK07094 biotin synthase; Provisional
Probab=96.41 E-value=0.27 Score=58.56 Aligned_cols=190 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.+++.+++++.++.+.+ .|+..+-+.||..+. +..+.-.+-++.+++. ++..+.+-+ | ...
T Consensus 68 ~~ls~eei~~~~~~~~~--~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~-~~l~i~~~~------g------~~~ 128 (323)
T PRK07094 68 YRLSPEEILECAKKAYE--LGYRTIVLQSGEDPY----YTDEKIADIIKEIKKE-LDVAITLSL------G------ERS 128 (323)
T ss_pred cCCCHHHHHHHHHHHHH--CCCCEEEEecCCCCC----CCHHHHHHHHHHHHcc-CCceEEEec------C------CCC
Confidence 35789999999998887 799998887664211 1111112333444443 343332211 1 123
Q ss_pred HHHHHHHHhcCCCEEEE-eccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRV-FDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~ri-f~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.+ +.+.| +.+....+++.++++|. .+...+.+. -| ..+.+.+.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi---~v~~~~iiG----lp---get~ed~~ 198 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY---EVGSGFMVG----LP---GQTLEDLA 198 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC---eecceEEEE----CC---CCCHHHHH
Confidence 45688888999998876 34443 34567788999999999 666665554 45 46788999
Q ss_pred HHHHHHHHCCCCEEEEc------cc----cCcCCHHHHHHHHHHHHHHcCCceE----EEeecCCcchHHHHHHHHHHhc
Q psy15244 824 DLAKQLVESGAQVLCLK------DM----AGLLKPTAAKLLIGSFREKYPNILI----HVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~------Dt----~G~l~P~~~~~lv~~lr~~~p~ipi----~~H~Hnd~GlA~An~laAi~AG 889 (1427)
+.++.+.+.+++.+.+- .| .....+..+.+++..+|-.+|+..| .+-+|...| ...|+.+|
T Consensus 199 ~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~-----~~~~l~~G 273 (323)
T PRK07094 199 DDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDG-----REKGLKAG 273 (323)
T ss_pred HHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchh-----HHHHHHcC
Confidence 99999999998866541 11 0124567788889999988887444 333343322 24899999
Q ss_pred CCEEEecccc
Q psy15244 890 ADIVDVAADS 899 (1427)
Q Consensus 890 ad~VD~av~G 899 (1427)
|+.+=.++.+
T Consensus 274 an~~~~~~~~ 283 (323)
T PRK07094 274 ANVVMPNLTP 283 (323)
T ss_pred CceecCCCCc
Confidence 9988665533
No 242
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.38 E-value=0.011 Score=72.61 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
....|.||.+|.|.+++|++||.|++||+|+.++
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 4566889999999999999999999999999984
No 243
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=96.38 E-value=0.0076 Score=55.78 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=48.5
Q ss_pred ccCCCCCccee------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceec
Q psy15244 1289 LNGPNIGEEFS------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGA 1362 (1427)
Q Consensus 1289 v~~~~~g~~~~------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~A 1362 (1427)
+..|+.|..++ |.++.|+.+ .. |..-..++.+.. ...|.|
T Consensus 3 i~~P~~G~~~~~~~i~~~~v~~G~~V-----------~~-G~~l~~iet~K~----------------------~~~v~a 48 (74)
T PF00364_consen 3 IKAPMLGEVMEEGTITKWLVEEGDKV-----------KK-GDPLAEIETMKM----------------------EMEVEA 48 (74)
T ss_dssp EEESSSSEEEEEEEEEEESSSTTEEE-----------ST-TSEEEEEESSSE----------------------EEEEEB
T ss_pred EECCCCccEEEecceeEEEECCCCEE-----------Ec-CceEEEEEcCcc----------------------ceEEEC
Confidence 34556666666 888888886 22 444444443322 347899
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
|.+|+|.++++++||.|..||+|+.|
T Consensus 49 ~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 49 PVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCCEEEEEEEECCCCEECCCCEEEEC
Confidence 99999999999999999999999986
No 244
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.31 E-value=0.0078 Score=71.69 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.7
Q ss_pred CceecCCC---eEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1358 GEIGAPMP---GNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1358 ~~V~APm~---G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
..|.++.+ |+|.+|+|++||.|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 46889999 9999999999999999999999985
No 245
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.21 E-value=0.071 Score=61.97 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=127.6
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEF 203 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~ 203 (1427)
+-+.+.++....--||-....+-++-....++++ ++... .-.+- ...++.+..=-+.||+ .+.|.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~a~--aP~GW---~~~fa~~~~~~vL~G~--tvFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPDAA--APAGW---SPAFAERVRDAVLPGY--TVFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCCCC--CCCCc---CHHHHHHHhhhccCCc--cccCHHHHHHH
Confidence 5677777765554555555555445555555553 33221 11222 2223333333356776 68899999888
Q ss_pred HHhc--CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEee
Q psy15244 204 CDEV--EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY 281 (1427)
Q Consensus 204 a~~i--GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~ 281 (1427)
+..+ +-||-+||..+.||+|..++.+.++|+.+++..-..... ...+++|+-|+...-+||.-+.-+ |..+..+
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-GLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-CEEEEEe
Confidence 8765 679999999999999999999999999999875443332 357999999998888888766543 3455554
Q ss_pred eeccccccccc-eEEEEc------------cCCCCCHHHHHHHHHHHH-HHHHHcCCCCe----EEEEEE--EcCCCcEE
Q psy15244 282 ERDCSMQRRYQ-KVIQIA------------PAQDMSVSVRDAITETSV-RLAKSLGYSNA----GTVEFL--LDKDDNFY 341 (1427)
Q Consensus 282 erd~s~qr~~q-k~ie~a------------Pa~~l~~e~~~~l~~~a~-~l~~alg~~G~----~~VEfl--vd~dG~~y 341 (1427)
...|....++. ++-..+ -...+++..+..|..... ..+-.-.|-|. -+-|.. .|..|.+.
T Consensus 206 GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA~~Yd~Aa~~~yPgf~ASRRNYDVa~G~da~G~~r 285 (355)
T PF11379_consen 206 GTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQARAYDAAAQACYPGFFASRRNYDVAQGLDAQGRWR 285 (355)
T ss_pred eEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCchhheeeccceeeeccCCCCCee
Confidence 44444444332 221111 022466666655543322 11111122221 123333 24455543
Q ss_pred --EEeeCCCCCCc
Q psy15244 342 --FIEVNPRLQVE 352 (1427)
Q Consensus 342 --fIEINpRl~ge 352 (1427)
++|=.=|++|.
T Consensus 286 ~GVLEQSWRvGGA 298 (355)
T PF11379_consen 286 SGVLEQSWRVGGA 298 (355)
T ss_pred eceeeeeeccCCC
Confidence 89999999874
No 246
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=96.20 E-value=0.23 Score=59.93 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=140.2
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~ 749 (1427)
..+++.+++++.++...+ .|+..+-+-+|-.++..+ +.-.+.++.+++..|++.+..+... .+..|
T Consensus 76 ~y~l~~eeI~~~a~~~~~--~G~~~v~l~~G~~p~~~~----~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g--- 146 (351)
T TIGR03700 76 AYAMSLEEIVARVKEAYA--PGATEVHIVGGLHPNLPF----EWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISG--- 146 (351)
T ss_pred cCCCCHHHHHHHHHHHHH--CCCcEEEEecCCCCCCCH----HHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcC---
Confidence 345899999999998887 799888776664432111 1123456778888888876654221 00111
Q ss_pred CCcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
...++.+++.+++|+|.+.- .-+.+ +.+...++++.++++|+ .+..++.+. -
T Consensus 147 ---~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi---~~~sg~i~G----l---- 212 (351)
T TIGR03700 147 ---LPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGL---KTNATMLYG----H---- 212 (351)
T ss_pred ---CCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC---CcceEEEee----C----
Confidence 12345577888899987751 22221 34555678999999999 666666655 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEE----cccc------CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQV------LCL----KDMA------GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTG 878 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~------i~i----~Dt~------G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA 878 (1427)
.-+.+..++.+..+.+.+.+. |-+ .+|- ..+.|.+....+...|=-+|+++ |-. .-...|.
T Consensus 213 gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a-~w~~~~~- 290 (351)
T TIGR03700 213 IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKA-YWVMLGL- 290 (351)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccc-cccccCH-
Confidence 256777777777777776643 444 2442 34678888888888876666533 111 1112243
Q ss_pred HHHHHHHHHhcCCEEEecccc--CC---C-CCC-CCcHHHHHHHHHhCCCCC
Q psy15244 879 VATTLACVKAGADIVDVAADS--MS---G-ICS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~av~G--mG---~-~tg-n~~lE~vv~~L~~~g~~t 923 (1427)
.....++.+||+=+++|+.. +. | ..+ .++.+++...++..|+.+
T Consensus 291 -~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p 341 (351)
T TIGR03700 291 -KLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVP 341 (351)
T ss_pred -HHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCe
Confidence 35588999999999877642 11 1 222 467899999888776543
No 247
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.19 E-value=0.013 Score=57.56 Aligned_cols=46 Identities=35% Similarity=0.345 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecC
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~ 1412 (1427)
|.-.+..|++||.|++||.|+.-+. -+...|.||++|+|+.|.-..
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~ 84 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP 84 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence 3445889999999999999999986 668999999999999886433
No 248
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.18 E-value=0.34 Score=53.75 Aligned_cols=194 Identities=17% Similarity=0.141 Sum_probs=117.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
++.++.+++++.+ . .|++.||++-. +..+...+-++.||+..|+..+-.-+.=. -|++ .
T Consensus 9 ~~~~~a~~~~~~l-~--~~v~~iev~~~--------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-------d~~~---~ 67 (206)
T TIGR03128 9 LDIEEALELAEKV-A--DYVDIIEIGTP--------LIKNEGIEAVKEMKEAFPDRKVLADLKTM-------DAGE---Y 67 (206)
T ss_pred CCHHHHHHHHHHc-c--cCeeEEEeCCH--------HHHHhCHHHHHHHHHHCCCCEEEEEEeec-------cchH---H
Confidence 5678899999999 5 59999999522 12233356788898887754432111000 1222 1
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.+.++|.|.+-+- ......++...++.+++.|. .+...++ +| .+ ..+.++.+.+.|+|.+
T Consensus 68 ~~~~~~~~Gad~i~vh-~~~~~~~~~~~i~~~~~~g~---~~~~~~~------~~----~t---~~~~~~~~~~~g~d~v 130 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-GVADDATIKGAVKAAKKHGK---EVQVDLI------NV----KD---KVKRAKELKELGADYI 130 (206)
T ss_pred HHHHHHHcCCCEEEEe-ccCCHHHHHHHHHHHHHcCC---EEEEEec------CC----CC---hHHHHHHHHHcCCCEE
Confidence 3788899999987644 33444567888999999998 5544321 23 11 3344556677899998
Q ss_pred EEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 838 CLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 838 ~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
.+-= ..|-.......+.++.+++.++..+|.+ +-|....|.-..+++||+.+-+.-+= ...++..+.+..|
T Consensus 131 ~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v----~GGI~~~n~~~~~~~Ga~~v~vGsai----~~~~d~~~~~~~l 202 (206)
T TIGR03128 131 GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAV----AGGINLDTIPDVIKLGPDIVIVGGAI----TKAADPAEAARQI 202 (206)
T ss_pred EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEE----ECCcCHHHHHHHHHcCCCEEEEeehh----cCCCCHHHHHHHH
Confidence 7731 0011111112345667777665555432 34666778889999999988543222 2334555666555
Q ss_pred H
Q psy15244 917 E 917 (1427)
Q Consensus 917 ~ 917 (1427)
+
T Consensus 203 ~ 203 (206)
T TIGR03128 203 R 203 (206)
T ss_pred H
Confidence 4
No 249
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.17 E-value=0.0034 Score=74.31 Aligned_cols=34 Identities=35% Similarity=0.580 Sum_probs=24.7
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.||.+|.| +++|++||.|++||+|+.++.
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 3567999999999 999999999999999999964
No 250
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.10 E-value=0.019 Score=58.97 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=54.9
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.+++.|+..+|.+..|+.+ .. |..-+.++-. .....|.||.
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V-----------~~-Gq~L~~lEam----------------------Kme~eI~Ap~ 105 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQV-----------TE-NQPLLILEAM----------------------KMENEIVASS 105 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEecc----------------------CccEEEEcCC
Confidence 466799999999999999999987 22 3322222210 1356899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.|+|.+++|++||.|+.||+|+.|
T Consensus 106 ~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 106 AGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CeEEEEEEeCCCCEeCCCCEEEEe
Confidence 999999999999999999999986
No 251
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=96.00 E-value=0.2 Score=57.80 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=108.9
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCCEEEEcc-cc--C--cCCHH-H---HHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 814 KKK-YSLNYYEDLAKQLVESGAQVLCLKD-MA--G--LLKPT-A---AKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 814 ~~~-~~~~~~~~~a~~l~~~Gad~i~i~D-t~--G--~l~P~-~---~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
.++ .+++..++.+++..+.|||.|-|.- +. | ...|+ + +..+|+.+++.+ ++||.+|+++ ...+.
T Consensus 16 g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~-----~~vi~ 89 (257)
T TIGR01496 16 GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYR-----AEVAR 89 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCC-----HHHHH
Confidence 445 4789999999999999999999941 11 0 11222 3 666778888777 8999999999 45556
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC------CCC-------------ChhhHHHHHHHHHHHhCCC
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR------CGI-------------DLHDVCDYSSYWRKVRELY 944 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~------tgi-------------dl~~L~~l~~~v~~~~g~~ 944 (1427)
+|+++|+++|+-.- |. . .+++...+++.|.. .++ -.+.+..+.+.++.....-
T Consensus 90 ~al~~G~~iINsis-~~---~----~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G 161 (257)
T TIGR01496 90 AALEAGADIINDVS-GG---Q----DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAG 161 (257)
T ss_pred HHHHcCCCEEEECC-CC---C----CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 88889999987552 22 1 23344444443211 011 0113333445555555555
Q ss_pred CCCCCcccccch-hhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC-------ccHHHHHHHHHHCCC---C
Q psy15244 945 APAHNLLWRCGI-DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG-------GQYTNLKFRTMSFGL---D 1013 (1427)
Q Consensus 945 ~~~~kpivG~~~-f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG-------g~~snl~~ql~~~gl---~ 1013 (1427)
++.+.+++--++ |... ..++-.+.+.-+.+..+..|-+.|.++.-+++..-| +....+...+.++|. |
T Consensus 162 i~~~~iilDPg~gf~ks-~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~iiR 240 (257)
T TIGR01496 162 VAAERIILDPGIGFGKT-PEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIVR 240 (257)
T ss_pred CCHHHEEEECCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEEE
Confidence 666775554433 5442 333333333323333233355666655555443322 112234455667777 5
Q ss_pred HHHHHHHHH
Q psy15244 1014 FEDVKRAYR 1022 (1427)
Q Consensus 1014 ~~ev~~~~~ 1022 (1427)
-.+|.+...
T Consensus 241 ~Hdv~~~~~ 249 (257)
T TIGR01496 241 VHDVKETRD 249 (257)
T ss_pred eCCHHHHHH
Confidence 555555443
No 252
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.99 E-value=0.091 Score=59.98 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=134.7
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCC--------chhh-hhhccc-----cChH
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA--------VSHT-CLKFLK-----ECPW 720 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~gga--------tfd~-~~rfl~-----e~p~ 720 (1427)
+.++-.|.=.|+=|- +.+.-+++++.|.+ .|.+.||.|-+. +... ..|-|+ ++-|
T Consensus 14 ~~~~a~i~yit~GdP---------~~e~s~e~i~~L~~--~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~l 82 (265)
T COG0159 14 ENRGALIPYVTAGDP---------DLETSLEIIKTLVE--AGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTL 82 (265)
T ss_pred hCCCCeEEEEeCCCC---------CHHHHHHHHHHHHh--CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHH
Confidence 344455555555552 34778899999988 799999998432 2222 244444 4668
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCC-CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNY-SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~-~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
+-++++|+..+++++.++. |-|. -..=++.|++.++++|+|-+-|.|--- +.-....+.+++.|+
T Consensus 83 el~~~~r~~~~~~Pivlm~-------Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~--ee~~~~~~~~~~~gi----- 148 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMT-------YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP--EESDELLKAAEKHGI----- 148 (265)
T ss_pred HHHHHHHhcCCCCCEEEEE-------eccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh--HHHHHHHHHHHHcCC-----
Confidence 8889999888999977654 3332 122367899999999999999888643 344456667778888
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEccccCcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcc
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG-AQVLCLKDMAGLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAG 876 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~G 876 (1427)
..|... +| .++.+.+.++++... | +--++..=++|.-.| ..+.++|+.+|+.. ++|+.+ |
T Consensus 149 -~~I~lv----aP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v------G 211 (265)
T COG0159 149 -DPIFLV----AP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV------G 211 (265)
T ss_pred -cEEEEe----CC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE------e
Confidence 123333 55 355555555444332 3 334555566777776 33899999999988 899876 5
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
.|+.+--.+.+.+.- .|+.+-|- .+|..++..
T Consensus 212 FGIs~~e~~~~v~~~-ADGVIVGS----------AiV~~i~~~ 243 (265)
T COG0159 212 FGISSPEQAAQVAEA-ADGVIVGS----------AIVKIIEEG 243 (265)
T ss_pred cCcCCHHHHHHHHHh-CCeEEEcH----------HHHHHHHhc
Confidence 555544444443322 34445442 477776653
No 253
>PRK08444 hypothetical protein; Provisional
Probab=95.95 E-value=0.38 Score=58.00 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=149.0
Q ss_pred CeEEeecCc---ccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 658 HILLTDTTF---RDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 658 ~v~i~DtTl---RDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
++-..||.+ |-..+..-+..++.+++++.|+...+ .|+..+=+-||-..+..+.+. .+.++.+++..|++.
T Consensus 57 N~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~--~G~~ei~iv~G~~p~~~~e~y----~e~ir~Ik~~~p~i~ 130 (353)
T PRK08444 57 NICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK--RGIKEVHIVSAHNPNYGYEWY----LEIFKKIKEAYPNLH 130 (353)
T ss_pred cccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH--CCCCEEEEeccCCCCCCHHHH----HHHHHHHHHHCCCce
Confidence 344455544 33333444567999999999999888 799988876654332211111 245677888888887
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEE-----e--------cc-CChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV-----F--------DP-LNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~ri-----f--------~~-~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+..+..+- +.-......-..++.+++.+++|+|.+.- | .+ -.+.+.....++.|+++|+ .+.
T Consensus 131 i~a~s~~E-i~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi---~~~ 206 (353)
T PRK08444 131 VKAMTAAE-VDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGK---MSN 206 (353)
T ss_pred EeeCCHHH-HHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCC---Ccc
Confidence 76543221 00000001122556778888999985432 1 11 1133566778899999999 677
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE------EEE----cccc----CcCCHHHHHHHHHHHHHHcCCce
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV------LCL----KDMA----GLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~------i~i----~Dt~----G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
.++.|. - .-+++..++.+..+.+...+. |-+ +.|- ..++|.+..+++...|=-+|++|
T Consensus 207 sg~l~G----~----gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ 278 (353)
T PRK08444 207 ATMLFG----H----IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIP 278 (353)
T ss_pred ceeEEe----c----CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 777776 2 256677777777777765442 333 4441 24677888887777776666552
Q ss_pred EEEeecCC-cchHHHHHHHHHHhcCCEEEecc-----ccCCC-CCC-CCcHHHHHHHHHhCCCC
Q psy15244 867 IHVHTHDM-AGTGVATTLACVKAGADIVDVAA-----DSMSG-ICS-QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 867 i~~H~Hnd-~GlA~An~laAi~AGad~VD~av-----~GmG~-~tg-n~~lE~vv~~L~~~g~~ 922 (1427)
|..-. .-++...+..|+.+||+=+++|+ ....| .++ .++.+++...++..|+.
T Consensus 279 ---ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~ 339 (353)
T PRK08444 279 ---HIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI 339 (353)
T ss_pred ---ccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence 21111 12456777889999999998886 33333 333 46789999999877654
No 254
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.86 E-value=0.25 Score=56.95 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-|.. -+++.|.|.. +-++.++++|+..+++++-.+
T Consensus 24 ~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm------ 95 (258)
T PRK13111 24 DLETSLEIIKALVE--AGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM------ 95 (258)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE------
Confidence 45778899999998 7999999996542 2333444433 336777888866677875432
Q ss_pred ccccCCCcc-hHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSPA-EVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~n-vv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-.-. =+++|++.++++|+|.+-|-|- .++..+..++.+++.|+ .. |.+. +| .++.+.+.
T Consensus 96 -~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl---~~---I~lv----ap---~t~~eri~ 159 (258)
T PRK13111 96 -TYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGL---DL---IFLV----AP---TTTDERLK 159 (258)
T ss_pred -ecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCC---cE---EEEe----CC---CCCHHHHH
Confidence 34331111 2678999999999999999654 35788899999999998 22 2222 44 23444444
Q ss_pred HHHHHHHHCCCCEEEE---ccccCc--CCHHHHHHHHHHHHHHcCCceEEE
Q psy15244 824 DLAKQLVESGAQVLCL---KDMAGL--LKPTAAKLLIGSFREKYPNILIHV 869 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i---~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~ 869 (1427)
.+++. .-.-|++ .=++|. ..|....++++.+|+.. ++||-+
T Consensus 160 ~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v 205 (258)
T PRK13111 160 KIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV 205 (258)
T ss_pred HHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE
Confidence 44333 3344544 334554 55677899999999976 788654
No 255
>PRK08445 hypothetical protein; Provisional
Probab=95.84 E-value=0.45 Score=57.33 Aligned_cols=226 Identities=8% Similarity=0.032 Sum_probs=134.7
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccc-ccccccCCCc
Q psy15244 674 LATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGN-SLVGYSNYSP 752 (1427)
Q Consensus 674 ~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~-n~vgy~~~~~ 752 (1427)
....++.+++++.++...+ .|...|=+-||-.++..+.++ -+-++.|++..|+..+..+.++. ..+. ..-.
T Consensus 69 ~~y~l~~eeI~~~~~~a~~--~g~~~i~~~gg~~~~~~~e~~----~~l~~~Ik~~~p~i~~~a~s~~ei~~~a--~~~~ 140 (348)
T PRK08445 69 DAYILSFEEIDKKIEELLA--IGGTQILFQGGVHPKLKIEWY----ENLVSHIAQKYPTITIHGFSAVEIDYIA--KISK 140 (348)
T ss_pred CCeeCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCCHHHH----HHHHHHHHHHCCCcEEEEccHHHHHHHH--HHhC
Confidence 3456799999999999888 688766444444332222121 23456788888887765443320 0000 0000
Q ss_pred chHHHHHHHHHhcCCCEEE-E-eccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFR-V-FDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~r-i-f~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
-..++.+++.+++|++.+. + .-++++ .+.-.++++.++++|+ .+..++.|. - .-+
T Consensus 141 ~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi---~~~sg~i~G----~----~Et 209 (348)
T PRK08445 141 ISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGM---KSTATMMFG----T----VEN 209 (348)
T ss_pred CCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---eeeeEEEec----C----CCC
Confidence 0124568888999999763 4 444442 2345688999999999 777776665 1 245
Q ss_pred HHHHHHHHHHHHHCCCC-----EEE-----Ecccc--------CcCCHHHHHHHHHHHHHHcCCc-eEEEeecCCcchHH
Q psy15244 819 LNYYEDLAKQLVESGAQ-----VLC-----LKDMA--------GLLKPTAAKLLIGSFREKYPNI-LIHVHTHDMAGTGV 879 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad-----~i~-----i~Dt~--------G~l~P~~~~~lv~~lr~~~p~i-pi~~H~Hnd~GlA~ 879 (1427)
.+..++.+..+.+.+.+ .+- -.+|- .-++|.+..+++...|=-+|++ .|-.-. -..|..+
T Consensus 210 ~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~ 288 (348)
T PRK08445 210 DEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI 288 (348)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH
Confidence 66666666666655432 221 12221 1377788888887777666652 122222 2445544
Q ss_pred HHHHHHHHhcCCEEEeccc-----cCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 880 ATTLACVKAGADIVDVAAD-----SMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~-----GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
+..|+.+||+-+++|+. ..+|.+...+.++++.+.+..|+
T Consensus 289 --~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~g~ 333 (348)
T PRK08445 289 --GQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDIGE 333 (348)
T ss_pred --HHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHcCC
Confidence 47889999999999873 23332222356888888887664
No 256
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=95.82 E-value=0.014 Score=59.38 Aligned_cols=46 Identities=30% Similarity=0.450 Sum_probs=35.7
Q ss_pred eEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEec
Q psy15244 1366 GNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411 (1427)
Q Consensus 1366 G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~ 1411 (1427)
|.|+.+.. +.|+.+++|++++.||+.|...++.||++|+|.+++-+
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 56666655 45999999999999999999999999999999988644
No 257
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=95.72 E-value=0.029 Score=63.21 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=58.7
Q ss_pred hcccccceeccCCCCCccee-------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccC
Q psy15244 1280 LRLKSERIFLNGPNIGEEFS-------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKA 1352 (1427)
Q Consensus 1280 ~~~~s~~v~v~~~~~g~~~~-------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a 1352 (1427)
+...+....|.++|.|..|. |.++.||.+ .. |..-..+|-+-
T Consensus 191 ~~~~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsV-----------kk-GQvLavIEAMK------------------- 239 (274)
T PLN02983 191 KAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKV-----------QK-GQVVCIIEAMK------------------- 239 (274)
T ss_pred CCCcCCCCeEeCCcCeEEEeccCCCCcceeCCCCEe-----------cC-CCEEEEEEeec-------------------
Confidence 34577778899999999999 677888876 22 44333333221
Q ss_pred CCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1353 ~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
....|.||..|+|.++++++||.|..||+|++||
T Consensus 240 ---meieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 240 ---LMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred ---eeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 2357899999999999999999999999999986
No 258
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.61 E-value=0.63 Score=54.43 Aligned_cols=207 Identities=16% Similarity=0.151 Sum_probs=122.4
Q ss_pred CccEEeccCCCchhhhhhccc--cChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEE
Q psy15244 696 NLYSLEMWGGAVSHTCLKFLK--ECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772 (1427)
Q Consensus 696 G~~~iE~~ggatfd~~~rfl~--e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~ri 772 (1427)
||..|=+.|.+ +..++.+-. --+| |.+..++...+.+.+-...-..+. | -+.| +...+++..++|+.-+.|
T Consensus 38 Gf~ai~~ss~~-~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g---~~~~-v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 38 GFDGIWSSSLT-DSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-G---NFEH-FRRLVRKLERRGVSAVCI 111 (285)
T ss_pred CcCEEEechHH-HHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-C---CHHH-HHHHHHHHHHcCCeEEEE
Confidence 77777654422 222222211 1123 344445444443333333333322 2 4555 566788899999999999
Q ss_pred eccC----------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 773 FDPL----------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 773 f~~~----------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
=|.. -+.+.+..-|++++++... ....|.-..| -.......+..++-++...++|||.
T Consensus 112 EDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~---~~~~IiARTD---a~~~~~~~~eAi~Ra~ay~eAGAD~ 185 (285)
T TIGR02320 112 EDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT---EDFMIIARVE---SLILGKGMEDALKRAEAYAEAGADG 185 (285)
T ss_pred eccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC---CCeEEEEecc---cccccCCHHHHHHHHHHHHHcCCCE
Confidence 5532 2456666777777766321 1122222212 1111346889999999999999999
Q ss_pred EEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 837 i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
|.+. .+..+++++.++++.++..+|++|+-+.. ...+.- +.-.--+.|++.|-.....+ ++-.-++++.+..+
T Consensus 186 ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~~~~~--~aa~~a~~~~~~~~ 258 (285)
T TIGR02320 186 IMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYANHLL--RAAYAAMQQVAERI 258 (285)
T ss_pred EEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEhHHHH--HHHHHHHHHHHHHH
Confidence 9986 44688999999999999888888985433 222221 34455678999985544333 44444566666666
Q ss_pred HhCCC
Q psy15244 917 ENTDK 921 (1427)
Q Consensus 917 ~~~g~ 921 (1427)
...|.
T Consensus 259 ~~~g~ 263 (285)
T TIGR02320 259 LEHGR 263 (285)
T ss_pred HHcCC
Confidence 65543
No 259
>PRK05927 hypothetical protein; Provisional
Probab=95.56 E-value=0.45 Score=57.35 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=138.5
Q ss_pred CcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 665 TFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 665 TlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
.+|...++..+..++.+++++.++.... .|+..+=+.||-..+..+.|+ .+.++.+++..|++.+..+... .+
T Consensus 63 af~~~~~~~~~y~ls~eei~~~a~~~~~--~G~~~i~i~gG~~p~~~~e~~----~~~i~~ik~~~p~l~~~~~s~~-ei 135 (350)
T PRK05927 63 AFYRKPHSSDAYLLSFDEFRSLMQRYVS--AGVKTVLLQGGVHPQLGIDYL----EELVRITVKEFPSLHPHFFSAV-EI 135 (350)
T ss_pred CccCCCCCccccccCHHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCHHHH----HHHHHHHHHHCCCCcccCCCHH-HH
Confidence 4555444444457999999999999888 699887777775433221111 2345667777776643111000 00
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEE-------------EeccCC-hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCC
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFR-------------VFDPLN-SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLT 810 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~r-------------if~~~n-d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~ 810 (1427)
.-.....-...++.+++..++|++.+. +..+-. +.+.=.+.++.|++.|+ .+..++.|..
T Consensus 136 ~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi---~~~sg~l~G~--- 209 (350)
T PRK05927 136 AHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGF---RSTATMMFGH--- 209 (350)
T ss_pred HHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCC---CcCceeEEee---
Confidence 000000122346667888899997433 111212 23555678899999999 6666666662
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC---CEE-EEc------ccc-C-----cCCHHHHHHHHHHHHHHcCCceEEEeecCC
Q psy15244 811 NPNKKKYSLNYYEDLAKQLVESGA---QVL-CLK------DMA-G-----LLKPTAAKLLIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 811 ~p~~~~~~~~~~~~~a~~l~~~Ga---d~i-~i~------Dt~-G-----~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
.-+.+..++.+..+.+.+- ... -|+ +|- + -++|.+..+++...|--+|++++ +-+ .-
T Consensus 210 -----gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~-i~~-~w 282 (350)
T PRK05927 210 -----VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH-IAA-SW 282 (350)
T ss_pred -----CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-ccC-Cc
Confidence 2355555555555555431 111 133 342 1 37788888888888877887662 222 12
Q ss_pred cchHHHHHHHHHHhcCCEEEecc-----ccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 875 AGTGVATTLACVKAGADIVDVAA-----DSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av-----~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
..+|...+..|+.+||+-+++++ +...+.+...+.+++...++..|+.
T Consensus 283 ~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~~~~~~l~~~i~~~G~~ 335 (350)
T PRK05927 283 FGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQSSEEEICAMILSEGFI 335 (350)
T ss_pred cccCHHHHHHHHhCCCccccCCCccceeeccCCCCCcCCHHHHHHHHHHcCCC
Confidence 23455566789999999999877 2222222222678888888877654
No 260
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.56 E-value=0.22 Score=61.95 Aligned_cols=30 Identities=53% Similarity=0.766 Sum_probs=27.0
Q ss_pred eEeecccccccchhhhhccccccccccccc
Q psy15244 615 VLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
+.|+|||+||++||+.+++.++-|.+.++.
T Consensus 3 V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~ 32 (467)
T PRK14041 3 VMFVDTTLRDGHQSLIATRMRTEDMLPALE 32 (467)
T ss_pred eEEEECCCCccccCcCCccCCHHHHHHHHH
Confidence 789999999999999999999999887643
No 261
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=95.53 E-value=0.26 Score=56.33 Aligned_cols=181 Identities=17% Similarity=0.094 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---hh------hhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---SH------TCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---fd------~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+...+.++.|.+ .|++.||++-+.+ .| .+.|-|.. .-++-++.+|+.. ++++.++.--
T Consensus 12 ~~~~~~~~~~~l~~--~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~--- 85 (242)
T cd04724 12 DLETTLEILKALVE--AGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYY--- 85 (242)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEec---
Confidence 44678889999998 7999999984331 11 12222221 3366677777765 5664433211
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.++-.+=+..|++.++++|++.+-+.|- ..+.+...++.+++.|. ..... . +| .++.+.+..
T Consensus 86 ---n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~---~~i~~---i----~P---~T~~~~i~~ 147 (242)
T cd04724 86 ---NPILQYGLERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGL---DLIFL---V----AP---TTPDERIKK 147 (242)
T ss_pred ---CHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCC---cEEEE---e----CC---CCCHHHHHH
Confidence 1111112577999999999999888764 24688889999999998 33222 1 44 244444444
Q ss_pred HHHHHHHCCCCE---EEEccccCcCC--HHHHHHHHHHHHHHcCCceEEEeecCCcchHHH-HHHHHHHhcCCEE
Q psy15244 825 LAKQLVESGAQV---LCLKDMAGLLK--PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA-TTLACVKAGADIV 893 (1427)
Q Consensus 825 ~a~~l~~~Gad~---i~i~Dt~G~l~--P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A-n~laAi~AGad~V 893 (1427)
++ +...+. +.+.-..|.-+ +..+.+.++.+|+.. ++||.+ +.|.-.. ++-.++++ ||.+
T Consensus 148 i~----~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 148 IA----ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HH----hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 33 323333 33455566543 467889999999875 888877 3455534 66667777 8765
No 262
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=95.53 E-value=0.079 Score=56.66 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=62.5
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeeecccccc--------------------ccceEEEEccCCCCCHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR--------------------RYQKVIQIAPAQDMSVSVRDA 310 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr--------------------~~qk~ie~aPa~~l~~e~~~~ 310 (1427)
.+..|||||- |-++-+..+...=-+-+.+..-|-.++. .+. ++...|. .+-+.+.++
T Consensus 21 ~~~~IeEyvi-G~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~v-vvGn~p~-vlRESLL~~ 97 (188)
T PF06973_consen 21 ENAIIEEYVI-GVPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYV-VVGNIPA-VLRESLLPK 97 (188)
T ss_dssp CCEEEEE----SEEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EE-EEEEEEE-EE-GGGHHH
T ss_pred cccEEEEEec-CceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceE-EECCccc-chhHhhHHH
Confidence 6899999999 7777777775433233333322211111 111 2233455 477888899
Q ss_pred HHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 311 ITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 311 l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
+.+++.+++++. |+-|++.+|.+++++.++++.|+.+|+.++
T Consensus 98 vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 98 VFEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCC
Confidence 999999888765 788999999999999999999999999986
No 263
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.51 E-value=0.83 Score=49.77 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC--CceeeeecccccccccCCCcchHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN--IPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~--~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+.+...++++.+.+ .|++.|++.| +-++.+++..++ .++.+-+-+.+ ++ ... ....
T Consensus 11 d~~~~~~~~~~~~~--~gv~gi~~~g----------------~~i~~~~~~~~~~~~~v~~~v~~~~--~~-~~~-~~~~ 68 (201)
T cd00945 11 TLEDIAKLCDEAIE--YGFAAVCVNP----------------GYVRLAADALAGSDVPVIVVVGFPT--GL-TTT-EVKV 68 (201)
T ss_pred CHHHHHHHHHHHHH--hCCcEEEECH----------------HHHHHHHHHhCCCCCeEEEEecCCC--CC-CcH-HHHH
Confidence 56778888888887 7999999875 345566666664 44333221111 11 112 2345
Q ss_pred HHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh---cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV---TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~---G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
+.++.|.+.|.|.+-+..+... .+.+...++.+.+. +. - .+.|. .|..+ .+++.+.++++.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---p---v~iy~----~p~~~-~~~~~~~~~~~~ 137 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGL---P---LKVIL----ETRGL-KTADEIAKAARI 137 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCc---e---EEEEE----ECCCC-CCHHHHHHHHHH
Confidence 5688999999999887544321 34444545545444 55 2 22333 34332 478889988888
Q ss_pred HHHCCCCEEEEccccCcC----CHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 829 LVESGAQVLCLKDMAGLL----KPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l----~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+.|++. ||++.|.. ....+..+ ++.++ ++++-.-+-.+ ...++..++.+||+.+
T Consensus 138 ~~~~g~~~--iK~~~~~~~~~~~~~~~~~i----~~~~~~~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 138 AAEAGADF--IKTSTGFGGGGATVEDVKLM----KEAVGGRVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred HHHhCCCE--EEeCCCCCCCCCCHHHHHHH----HHhcccCCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 88888885 56777743 44555444 44443 45665554333 2567788888898865
No 264
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.50 E-value=0.06 Score=47.98 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=47.3
Q ss_pred ccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1289 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1289 v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.+++.|...+|.++.|+.+ .. |..-..++-. .....|.||..|.|
T Consensus 2 v~a~~~G~v~~~~v~~G~~v-----------~~-g~~l~~i~~~----------------------~~~~~i~ap~~G~v 47 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKV-----------EA-GQPLAVLEAM----------------------KMENEVTAPVAGVV 47 (67)
T ss_pred ccCCccEEEEEEEeCCCCEE-----------CC-CCEEEEEEcc----------------------cEEEEEeCCCCEEE
Confidence 45778888888888888775 12 3222111100 01346999999999
Q ss_pred EEEEecCCCEEecCCEEEEE
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.++.++.|+.|++|++|+.|
T Consensus 48 ~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 48 KEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEECCCCEECCCCEEEEC
Confidence 99999999999999999875
No 265
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.32 E-value=0.055 Score=63.38 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=53.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..|.||-+|. +...++.||.|++||+|+.+-..- ...+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~-~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGL-LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeE-EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 4789999994 567999999999999999996532 33689999999994 45577788889998875
No 266
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.26 E-value=0.059 Score=63.99 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=54.0
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcC----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..|.||.+| ++...++.||.|++||+|+.|-.+ ....+|+||.+|+|... ...-.|..||.|+.|
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i 313 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVL 313 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEE
Confidence 568999999 778999999999999999999775 34678999999998644 344568888888765
No 267
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.15 E-value=0.13 Score=60.97 Aligned_cols=32 Identities=53% Similarity=0.769 Sum_probs=28.6
Q ss_pred cceeEeecccccccchhhhhcccccccccccc
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVM 643 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~ 643 (1427)
.+.+.++||+.||+|||+.|||.|+=|.+-+.
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~ 34 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIA 34 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHH
Confidence 46789999999999999999999999987653
No 268
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.04 E-value=0.068 Score=62.91 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC---CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM---KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam---Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.||-+| ++...++.||.|++||+|+.|=.. ....+|+||.+|+|.. ....-.|..|++|+.|
T Consensus 228 ~~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 228 DVVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred ceEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 34678999999 778889999999999999998764 2466899999999965 4566788999999875
No 269
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.92 E-value=0.077 Score=63.12 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=55.0
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.-|.||-+| ++...|+.||.|++||+|+.|=..- ...+|+||.+|+|-. ....-.|..||.|+.|
T Consensus 256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 469999999 6679999999999999999997752 467899999999975 5566788889998865
No 270
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.92 E-value=0.12 Score=64.13 Aligned_cols=31 Identities=35% Similarity=0.586 Sum_probs=27.8
Q ss_pred eeEeecccccccchhhhhccccccccccccc
Q psy15244 614 HVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
.+.|+|||+||++||+.+++.++-|...++.
T Consensus 3 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~ 33 (448)
T PRK12331 3 KIKITETVLRDGQQSLIATRMTTEEMLPILE 33 (448)
T ss_pred ccEEEECCCCccccCcCCcccCHHHHHHHHH
Confidence 5899999999999999999999999887643
No 271
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=94.80 E-value=0.15 Score=62.53 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHHHH
Q psy15244 71 RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKA 150 (1427)
Q Consensus 71 riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~ 150 (1427)
...+.+.+.|+.+++++...-. +.|.....+ + .+ ++.|-+.+--.. +++-++ +...+.++
T Consensus 204 ~f~~~f~~~G~~~vI~d~~~L~------y~~g~L~~~-~-~~------ID~VyRR~Vt~e---~l~~~d---~~~~li~A 263 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPRDLE------YRDGRLYAG-G-RP------IDAVYRRFVTSE---LLERYD---EVQPLIQA 263 (445)
T ss_pred HHHHHHHHcCCceEecChHHce------ecCCEEEEC-C-Ee------eehhhHhhhhHH---hhhccc---cchHHHHH
Confidence 3677788999999987543322 233333322 1 11 334444333322 122232 33355666
Q ss_pred HHHCCCceeCCCHHHHHHhCCHHHHHHHHH---------------hCCCCCCCCccccCCC--------HHHHHHHHHhc
Q psy15244 151 VIGAGLEFIGPAPNVLKTLGDKVLARDAAL---------------KADVPIIPGTTEPVTD--------VDKVKEFCDEV 207 (1427)
Q Consensus 151 ~e~~Gi~fiGps~eai~~~~DK~~~r~~a~---------------~aGVpvp~~~~~~v~s--------~eea~~~a~~i 207 (1427)
..+.-+.++|+ -..++++||..+.-+-. +..||-.. .++. ..++.+++...
T Consensus 264 y~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~----~l~~~~~~~~g~~~dL~~~~~a~ 337 (445)
T PF14403_consen 264 YRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTR----LLTAGRTTYQGEDVDLVEFAIAN 337 (445)
T ss_pred HhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceE----EEcCccccccccchhHHHHHHhc
Confidence 66655666653 34456666655543322 22243221 2222 34555555555
Q ss_pred CCcEEEeecCCCCCcCeEEe--cCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 208 EFPVILKAAFGGGGRGMRMV--ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 208 GyPvVVKP~~GgGGrGV~iV--~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
.=-+|+||.++.||+||.+= .++++.+++++++. ++++++|||++ +.......+.|++
T Consensus 338 r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~-~~~~~~~~~~dg~ 397 (445)
T PF14403_consen 338 RDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVR-PPREPMPAFEDGE 397 (445)
T ss_pred hhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEec-CCccccccccCCc
Confidence 56789999999999999976 56788888877654 35899999999 5444444444543
No 272
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=94.80 E-value=7.6 Score=45.56 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=127.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec-cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM-WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~-~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.+.+++++.++.+.+ .|+..+-+ .+|-.. ....+.+.++.+++...+..+...+. +|+ +-+
T Consensus 62 ~~~eei~~~~~~~~~--~g~~~~~l~~~g~~~------~~~~~~~~~~~i~~~~~~~~i~~~~~----~g~------~~~ 123 (296)
T TIGR00433 62 KKVDEVLEEARKAKA--AGATRFCLVASGRGP------KDREFMEYVEAMVQIVEEMGLKTCAT----LGL------LDP 123 (296)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEEecCCC------ChHHHHHHHHHHHHHHHhCCCeEEec----CCC------CCH
Confidence 567888888888877 68765432 111111 12233556666665544333333221 121 225
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
+.++...++|++.+.+..-.| +++....+++.++++|. .+...+.+. . ..+.+.+.+.
T Consensus 124 e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi---~v~~~~i~G----l----~et~~d~~~~ 192 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGL---KVCSGGIFG----L----GETVEDRIGL 192 (296)
T ss_pred HHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCC---EEEEeEEEe----C----CCCHHHHHHH
Confidence 668888999999987754444 23355678889999998 666555443 1 2467888899
Q ss_pred HHHHHHCCCCEEEE------cccc----CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 826 AKQLVESGAQVLCL------KDMA----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 826 a~~l~~~Gad~i~i------~Dt~----G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++.+.+.|++.+.+ +.|. ....+.+..+++...|..+|+..|-+=+=--.-+.---..-|+.+||+.+
T Consensus 193 ~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i-- 270 (296)
T TIGR00433 193 ALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSI-- 270 (296)
T ss_pred HHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceE--
Confidence 99999999986642 2331 23455788889999998898755522111111112111223899999987
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCC
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTD 920 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g 920 (1427)
.++++=-..|++.-++=+.+++..|
T Consensus 271 ~~g~~~~~~g~~~~~~~~~~~~~~~ 295 (296)
T TIGR00433 271 FVGDYLTTTGNPEEDKDKKLLAKLG 295 (296)
T ss_pred EEcCcccCCCCCCcHHHHHHHHHcC
Confidence 4567666788888734344555543
No 273
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.80 E-value=0.072 Score=62.47 Aligned_cols=66 Identities=29% Similarity=0.372 Sum_probs=54.0
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC---CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM---KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam---Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..-+.||-.| +++..|+.||.|++||+|+.+=.+ +-+.+|+|+.+|+|.... ---.|+.||++..+
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v 324 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV 324 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence 3459999999 779999999999999999999888 688899999999997664 23345556776654
No 274
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.69 E-value=4 Score=46.29 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=117.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
...+.+|..++++...+ .|++.+-+-.|. ++..++.. .+.++-+-+++...+++-..+...
T Consensus 16 p~~~~~d~~~~~~~~~~--~g~~av~v~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~ 77 (235)
T cd00958 16 PNPGLEDPEETVKLAAE--GGADAVALTKGI----------------ARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKV 77 (235)
T ss_pred CCccccCHHHHHHHHHh--cCCCEEEeChHH----------------HHhcccccCCCCcEEEEECCCCCCCCCCCCchh
Confidence 34567788888888887 688888764321 11111112 233333334555566653333333
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
....++.|.+.|.+.+-+-....+ ++.+....+.+++.|. .+-......+ .-.+. ..+.+.+...++.
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~---~~iie~~~~g-~~~~~--~~~~~~i~~~~~~ 151 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL---PLIAWMYPRG-PAVKN--EKDPDLIAYAARI 151 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC---CEEEEEeccC-CcccC--ccCHHHHHHHHHH
Confidence 344589999999997744443332 2366667777777887 3222211111 00111 2345666666888
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEee---cCCcchHHHHHHHHHHhcCCEEEeccccCCCCCC
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT---HDMAGTGVATTLACVKAGADIVDVAADSMSGICS 905 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~---Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tg 905 (1427)
+.++|||.|.+.=+. .++. ++.+.+.. .+|+-+=. .+|..-.+.|+-.++++||+.|-..-+=+ .
T Consensus 152 a~~~GaD~Ik~~~~~---~~~~----~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~----~ 219 (235)
T cd00958 152 GAELGADIVKTKYTG---DAES----FKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF----Q 219 (235)
T ss_pred HHHHCCCEEEecCCC---CHHH----HHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh----c
Confidence 889999999985322 2333 44455555 46654422 24455577889999999999885544333 3
Q ss_pred CCcHHHHHHHHH
Q psy15244 906 QPAMGTIVSCLE 917 (1427)
Q Consensus 906 n~~lE~vv~~L~ 917 (1427)
.++.++.+..|+
T Consensus 220 ~~dp~~~~~~~~ 231 (235)
T cd00958 220 RPDPVAMLRAIS 231 (235)
T ss_pred CCCHHHHHHHHH
Confidence 344555665554
No 275
>KOG3895|consensus
Probab=94.67 E-value=0.21 Score=57.76 Aligned_cols=219 Identities=18% Similarity=0.192 Sum_probs=129.4
Q ss_pred HhcCCCEEEeCCCc--ccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHH----HHhCC---CCCCCCccccC
Q psy15244 127 KNNNVDAIHPGYGF--LSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA----ALKAD---VPIIPGTTEPV 194 (1427)
Q Consensus 127 ~~~~vDaI~pg~gf--lsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~----a~~aG---Vpvp~~~~~~v 194 (1427)
+....|+|+.+-+. +.+|. .+...+..+||+++ +|...+-.+.||-..+.- ....| +|..+-++ .
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--Y 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--c
Confidence 34567888877442 23333 45567788999988 788888888887554433 34455 56555431 2
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 195 TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 195 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
-+-.+ ....-.||+|||--.+..|.|=.+|+|.+|+.+.-.- .... +...-+|.||+.-..+.||-++..+
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~sv-val~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASV-VALT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHH-HHHH-----hhhhhccccccccceeehhhhhhhH
Confidence 22222 2234459999999999999999999999998764332 2211 2456689999966778888776643
Q ss_pred ccEEEeeeeccccccccceEEEEccCCCCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC-CCC--
Q psy15244 275 GDVVHLYERDCSMQRRYQKVIQIAPAQDMS-VSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP-RLQ-- 350 (1427)
Q Consensus 275 G~vv~l~erd~s~qr~~qk~ie~aPa~~l~-~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp-Rl~-- 350 (1427)
-..+ .+ ++-. +.|.-..+ + -|. -..-++-.-+...+.+.+|---++.|+.+..+||+=|++|+|- -+.
T Consensus 300 Kaym---Rt--sIsg-nWKtNtGS-a-mLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~smpli 371 (488)
T KOG3895|consen 300 KAYM---RT--SISG-NWKTNTGS-A-MLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLI 371 (488)
T ss_pred HHHh---hh--hhcc-CcccCchH-H-HHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccccccc
Confidence 2111 10 1111 11111000 0 000 0011233334445566666666888999999999999999997 222
Q ss_pred CchhHHHHHhCCCHH
Q psy15244 351 VEHTLSEEITGIDVV 365 (1427)
Q Consensus 351 ge~~vte~~tGiDLv 365 (1427)
|||..-..-.-.+|+
T Consensus 372 Geh~eeDrql~~~Lv 386 (488)
T KOG3895|consen 372 GEHQEEDRQLISELV 386 (488)
T ss_pred ccchhHHHHHHHHHH
Confidence 666554433333333
No 276
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.53 E-value=0.64 Score=53.54 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc--------h-hhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV--------S-HTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------f-d~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|++ .|++.||+|-|.. . .++.|-|.. +-++-++.+|+..+++++-.+.
T Consensus 22 ~~~~~~~~~~~l~~--~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~----- 94 (259)
T PF00290_consen 22 DLETTLEILKALEE--AGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT----- 94 (259)
T ss_dssp SHHHHHHHHHHHHH--TTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-----
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe-----
Confidence 45778999999999 8999999985433 1 112222222 3367778888778888865543
Q ss_pred ccccCCCcc-hHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSPA-EVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~n-vv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
|-|-.-. =+++|++.+.++|+|-+-|-|-.. +......+.+++.|+ . .|.+. +| .++.+.+.
T Consensus 95 --Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~--ee~~~~~~~~~~~gl---~---~I~lv----~p---~t~~~Ri~ 157 (259)
T PF00290_consen 95 --YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPP--EESEELREAAKKHGL---D---LIPLV----AP---TTPEERIK 157 (259)
T ss_dssp ---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBG--GGHHHHHHHHHHTT----E---EEEEE----ET---TS-HHHHH
T ss_pred --eccHHhccchHHHHHHHHHcCCCEEEEcCCCh--HHHHHHHHHHHHcCC---e---EEEEE----CC---CCCHHHHH
Confidence 3221111 156899999999999999988653 444555667888898 3 23333 44 24555555
Q ss_pred HHHHHHHHCCCCEEEE---ccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 824 DLAKQLVESGAQVLCL---KDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i---~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
.+++.. -.-||+ .-++|.- .|..+.++++.+|+.. ++||-+= +|.....-.+.+..|||.|=+.
T Consensus 158 ~i~~~a----~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGvIVG-- 226 (259)
T PF00290_consen 158 KIAKQA----SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGVIVG-- 226 (259)
T ss_dssp HHHHH-----SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEEEES--
T ss_pred HHHHhC----CcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEEEEC--
Confidence 544433 344555 4444543 4788999999999998 8897652 2444445566666888876332
Q ss_pred cCCCCCCCCcHHHHHHHHHhC
Q psy15244 899 SMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 899 GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
..++..++..
T Consensus 227 -----------Sa~v~~i~~~ 236 (259)
T PF00290_consen 227 -----------SAFVKIIEEN 236 (259)
T ss_dssp -----------HHHHHHHHHT
T ss_pred -----------HHHHHHHHHc
Confidence 2477777763
No 277
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.49 E-value=2 Score=48.29 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccc----ccccccCCCcch
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGN----SLVGYSNYSPAE 754 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~----n~vgy~~~~~nv 754 (1427)
+.++..+++..+.+ .|...+++.+ ++.++.+++.. ++|+-.+.+-. +.+- ++
T Consensus 21 ~~~~~~~~a~a~~~--~G~~~~~~~~---------------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~---~~--- 76 (221)
T PRK01130 21 SPEIMAAMALAAVQ--GGAVGIRANG---------------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYI---TP--- 76 (221)
T ss_pred CHHHHHHHHHHHHH--CCCeEEEcCC---------------HHHHHHHHHhC-CCCEEEEEecCCCCCCceE---CC---
Confidence 34678999999988 7988888631 46677787764 67753222311 1211 11
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC---hHHHHHHHHHHHHH-hcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN---SVPNLVKGMDAVQQ-VTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n---d~~~~~~~i~~a~~-~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
..++++.+.++|+|.+-+-.+.. +-+.+...++.+++ .+. .+.. . .++.+. ++.+.
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i---~vi~----~---------v~t~ee----~~~a~ 136 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQ---LLMA----D---------CSTLEE----GLAAQ 136 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCC---eEEE----e---------CCCHHH----HHHHH
Confidence 23568999999999655543321 11456677888888 666 3221 1 234443 46788
Q ss_pred HCCCCEEEEc--cccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 831 ESGAQVLCLK--DMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 831 ~~Gad~i~i~--Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
++|+|.|.+- +..|. ........+++.+++.+ ++|+-. ..|.. ..++..++++|||.|=
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia----~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIA----EGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEE----ECCCCCHHHHHHHHHCCCCEEE
Confidence 8999988652 21111 11122356788888887 788765 56774 5788889999999873
No 278
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=94.43 E-value=0.052 Score=55.20 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=42.2
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEec
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~ 1411 (1427)
-+-|.|+-|.. +.|+.|++|+++++||+-|--.+|.||.+|+|.+++-+
T Consensus 36 ~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 36 DQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred HhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 45677877754 67899999999999999999999999999999988643
No 279
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.21 E-value=1.5 Score=49.12 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+..+..++|+...+ .|...|=+-- .+ .+.. .-.+.++.+++.. ++|+++. + | --+ ..
T Consensus 28 ~~~~~~~~~A~~~~~--~GA~~l~v~~---~~---~~~~-g~~~~~~~i~~~v-~iPi~~~--~-----~---i~~--~~ 85 (217)
T cd00331 28 REDFDPVEIAKAYEK--AGAAAISVLT---EP---KYFQ-GSLEDLRAVREAV-SLPVLRK--D-----F---IID--PY 85 (217)
T ss_pred CCCCCHHHHHHHHHH--cCCCEEEEEe---Cc---cccC-CCHHHHHHHHHhc-CCCEEEC--C-----e---ecC--HH
Confidence 455678899999988 6887764320 00 0111 2235677777764 6777742 2 1 111 23
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.+.++|+|.+.+....-..+.++..++.++..|. .+.+. . ++.+. ++++.+.|++.+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~---~~~v~--v-----------~~~~e----~~~~~~~g~~~i 145 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELGM---EVLVE--V-----------HDEEE----LERALALGAKII 145 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCC---eEEEE--E-----------CCHHH----HHHHHHcCCCEE
Confidence 6999999999999988776666888888998888888 44221 1 22222 667778899999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
.+-...|...+... +++..+++.+| ++|+-.=+ |.. ..+...+.++||+.|=
T Consensus 146 ~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~g----GI~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 146 GINNRDLKTFEVDL-NTTERLAPLIPKDVILVSES----GISTPEDVKRLAEAGADAVL 199 (217)
T ss_pred EEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEEc----CCCCHHHHHHHHHcCCCEEE
Confidence 88866666555555 67788887763 66764321 222 3678888999998764
No 280
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=94.17 E-value=0.12 Score=55.07 Aligned_cols=69 Identities=26% Similarity=0.414 Sum_probs=51.3
Q ss_pred eeccCCCCCccee-------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCc
Q psy15244 1287 IFLNGPNIGEEFS-------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGE 1359 (1427)
Q Consensus 1287 v~v~~~~~g~~~~-------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~ 1359 (1427)
..|.++|.|.-|. |.++.|+.+ .. |..-..+|-. .....
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V-----------~~-Gq~l~iiEam----------------------K~~~e 126 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKV-----------KK-GQIVCIVEAM----------------------KLMNE 126 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEe-----------CC-CCEEEEEEec----------------------ccceE
Confidence 4578999999887 556777775 22 3322222211 13568
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.||..|+|.+|+|+.||.|+.||+|+.|+
T Consensus 127 I~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 127 IEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 999999999999999999999999999885
No 281
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.17 E-value=0.12 Score=54.97 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||..|+|.+|+++.|+.|..||+|+.|+
T Consensus 123 ~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 468999999999999999999999999999875
No 282
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=94.14 E-value=0.78 Score=55.23 Aligned_cols=211 Identities=15% Similarity=0.096 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHHHH-
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLACV- 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~laAi- 886 (1427)
+.+++.+++.++.+.+.|++.|+|.+- .-......+.++++.+|+..|++.++. |.|.+.|+-....+..+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 469999999999999999999999831 113567778999999999987666543 34677887776665544
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSS 966 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~ 966 (1427)
+||++.+..+ |.-..++ ++...+. ..++..+.-.+..+...+ .|+.+.. --++|-+==....-.|..
T Consensus 149 eAGl~~i~~~----~~E~~~~---~v~~~i~----~~~~~~~~~~~~i~~a~~-~Gi~v~s-~~i~G~~Et~ed~~~~l~ 215 (343)
T TIGR03551 149 EAGLDSMPGT----AAEILDD---EVRKVIC----PDKLSTAEWIEIIKTAHK-LGIPTTA-TIMYGHVETPEHWVDHLL 215 (343)
T ss_pred HhCcccccCc----chhhcCH---HHHHhcC----CCCCCHHHHHHHHHHHHH-cCCcccc-eEEEecCCCHHHHHHHHH
Confidence 6899988621 1111111 1111110 011222222233332222 2443322 124554421234445555
Q ss_pred HHHHhhhhcCCCCCCCCCcCcccEEE-ecCCCccHHHHHHH-HHHCCCCHHHHHHHHHHHHHHcCCC-CccccchhhHHH
Q psy15244 967 YWRKVRELYAPFECTDLKAASSEAYL-YEIPGGQYTNLKFR-TMSFGLDFEDVKRAYRTANFLLGDI-IKCTPSSKVVAD 1043 (1427)
Q Consensus 967 ~~~~~~~~Y~~f~~~~~~g~~~~v~~-~~~pGg~~snl~~q-l~~~gl~~~ev~~~~~~v~~~lG~~-~~vTP~sq~vg~ 1043 (1427)
.+.+....|..|. + -+-+ ...||.. +..+ ...-++...+.++.++-.|-.+.+. +.+.-+....|+
T Consensus 216 ~lr~l~~~~~~~~-~-------~iP~~f~~~gT~---l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~ 284 (343)
T TIGR03551 216 ILREIQEETGGFT-E-------FVPLPFVHYNAP---LYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGK 284 (343)
T ss_pred HHHHhhHHhCCee-E-------EEeccccCCCCc---cccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCH
Confidence 5555544443332 0 1111 1123432 2211 0112347889999999999999874 455544456665
Q ss_pred H-HHHHHH
Q psy15244 1044 L-AIFMTQ 1050 (1427)
Q Consensus 1044 ~-a~~~v~ 1050 (1427)
. +.+...
T Consensus 285 ~~~~~~l~ 292 (343)
T TIGR03551 285 KLAQVALR 292 (343)
T ss_pred HHHHHHHh
Confidence 4 344343
No 283
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=94.04 E-value=0.12 Score=51.85 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHcCCEEEEEecCCCccC-ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc
Q psy15244 66 SEVAIRVARACNEMGIKSVGIYSEQDKFS-AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER 144 (1427)
Q Consensus 66 Geia~riiraa~elGi~~vav~s~~d~~s-~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~ 144 (1427)
+..|+.|++-|++.|++|++|........ .....+|+.+.+++ ..+.++ +.+.+-.++. ++|+.-.|.+.+.
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~----f~di~~-~~~q~~L~~~--N~I~VPhgSfv~Y 78 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDS----FSDILS-EEVQEKLREM--NAIFVPHGSFVAY 78 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESS----CGHCCS-HHHHHHHHHT--TEEE--BTTHHHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCC----HHHHHh-HHHHHHHHHC--CeEEecCCCeeEe
Confidence 34699999999999999999976443211 12237899988751 122222 2444444443 4566566666665
Q ss_pred HHHHHHHHH-CCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q psy15244 145 EDFAKAVIG-AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPG 189 (1427)
Q Consensus 145 ~~~a~~~e~-~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~ 189 (1427)
... +..++ .-+|++|+. ..++.-.|...-+++|.++|||.|.-
T Consensus 79 ~G~-d~ie~~~~vP~FGNR-~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 79 VGY-DRIENEFKVPIFGNR-NLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp H-H-HHHHHT-SS-EES-C-CGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred ecH-HHHhhcCCCCeecCh-HHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 544 34455 899999974 55666668888889999999999973
No 284
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=94.04 E-value=12 Score=42.20 Aligned_cols=210 Identities=18% Similarity=0.144 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc----cChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK----ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~----e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
+.+++++-++.+.. .|.+.||.- .| ++. +..++.+..+++.. +.++-.-+|-.+-=|.....++.
T Consensus 8 ~~~~~~~~~~~~~~--~~~D~vElR----lD----~l~~~~~~~~~~~l~~lr~~~-~~piI~T~R~~~eGG~~~~~~~~ 76 (224)
T PF01487_consen 8 TLEELLAELEEAES--SGADAVELR----LD----YLENDSAEDISEQLAELRRSL-DLPIIFTVRTKEEGGRFQGSEEE 76 (224)
T ss_dssp SHHHHHHHHHHHHH--TTTSEEEEE----GG----GSTTTSHHHHHHHHHHHHHHC-TSEEEEE--BGGGTSSBSS-HHH
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEE----ec----cccccChHHHHHHHHHHHHhC-CCCEEEEecccccCCCCcCCHHH
Confidence 34455555555544 499999973 22 233 45678888999888 88888888865444555666777
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
..++++.+++.|++.+-|=.... +.... ...++..+. .+ -++|- ||.. --+.+.+.++.+++.+.|
T Consensus 77 ~~~ll~~~~~~~~d~iDiE~~~~~~~~~~---~~~~~~~~~---~i--I~S~H-~f~~----tp~~~~l~~~~~~~~~~g 143 (224)
T PF01487_consen 77 YLELLERAIRLGPDYIDIELDLFPDDLKS---RLAARKGGT---KI--ILSYH-DFEK----TPSWEELIELLEEMQELG 143 (224)
T ss_dssp HHHHHHHHHHHTSSEEEEEGGCCHHHHHH---HHHHHHTTS---EE--EEEEE-ESS-------THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEEcccchhHHHH---HHHHhhCCC---eE--EEEec-cCCC----CCCHHHHHHHHHHHHhcC
Confidence 88999999999999998877632 22111 344444554 33 23444 3322 234556999999999999
Q ss_pred CCEEEEccccCcCCHHHHHHHHHHHHHHc--CCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKY--PNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 834 ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~--p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
||++-|+=|+. .+.+...|...+++.- ++.|+-..+=-..| ..+-+.+-..|....=+ ..|-..-+||+++++
T Consensus 144 adivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G--~~SRi~~~~~Gs~~t~~-~~~~~sApGQl~~~~ 218 (224)
T PF01487_consen 144 ADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISMGELG--RISRILNPIFGSVLTFA-SAGEASAPGQLTLEE 218 (224)
T ss_dssp -SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEETGGG--HHHHHCHHHHTBSEEEE-BSSS-SSTT-EBHHH
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEcCCCc--hhHHHHHhhhcCCcccC-CCCCCCCCCCCcHHH
Confidence 99999986654 4567777666655432 57887766544444 55667777778766555 555555789999999
Q ss_pred HHHHHH
Q psy15244 912 IVSCLE 917 (1427)
Q Consensus 912 vv~~L~ 917 (1427)
+...|+
T Consensus 219 l~~~~~ 224 (224)
T PF01487_consen 219 LREILH 224 (224)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887663
No 285
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.03 E-value=0.16 Score=61.30 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.||-.| ++...|+.||.|++||+|+.|-..- -+.+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 288 ~~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 288 GVEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CcEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 34578999999 7778999999999999999885522 23336999999985 55678889999999876
No 286
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.90 E-value=0.42 Score=59.81 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecccc
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADS 899 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~G 899 (1427)
...+.++.|.+.|++.|.| |++- ..|..+.++|+.+|+.+|++||-. ..+.....+..++++|||.|++.+.|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred cHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 4568899999999999888 8887 888999999999999999999877 55666778889999999999976544
No 287
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.86 E-value=2.5 Score=46.52 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+.+++.+.+ .|+..+|+-- -+.+..+.++.+++..|+..+.. |. ......
T Consensus 14 ~~~~~~~~~~~l~~--~G~~~vev~~----------~~~~~~~~i~~l~~~~~~~~iGa---g~----------v~~~~~ 68 (190)
T cd00452 14 DAEDALALAEALIE--GGIRAIEITL----------RTPGALEAIRALRKEFPEALIGA---GT----------VLTPEQ 68 (190)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEeC----------CChhHHHHHHHHHHHCCCCEEEE---Ee----------CCCHHH
Confidence 46788899999988 7999999841 23455667889999888654332 11 011345
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.+.+.|.+.++.-. ++ ...+++++..|. ..... ..|++. +.++.++|+|.|.
T Consensus 69 ~~~a~~~Ga~~i~~p~--~~----~~~~~~~~~~~~---~~i~g-------------v~t~~e----~~~A~~~Gad~i~ 122 (190)
T cd00452 69 ADAAIAAGAQFIVSPG--LD----PEVVKAANRAGI---PLLPG-------------VATPTE----IMQALELGADIVK 122 (190)
T ss_pred HHHHHHcCCCEEEcCC--CC----HHHHHHHHHcCC---cEECC-------------cCCHHH----HHHHHHCCCCEEE
Confidence 8899999999986432 22 345666777666 22111 224433 4455679999999
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+ +-+. |. -.++++.+++.+|++|+..= -|.-..|....+++||+.|-++
T Consensus 123 ~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 123 L-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred E-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCCEEEEEc
Confidence 8 4332 22 45577888887777776553 3666789999999999887433
No 288
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.84 E-value=0.14 Score=59.98 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC--CceeeeecCCCeEEEEEEecCCCeeCCCCEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM--KTETLIHASADGVVKEIFVEVGGQVAQNDLV 1422 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam--Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L 1422 (1427)
....+.||-+| ++...++.||.|++||+|+.+=.. ....+|+||.+|+|..+. ..-.|..|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 45678999999 778899999999999999998442 346789999999997554 34566666665
No 289
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.84 E-value=4.8 Score=44.79 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=103.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nvv 755 (1427)
.+.+|+.++++...+ .|+..+-+..+ .++..++...+..+.+-. .+||.. .+...+
T Consensus 14 ~t~~~i~~~~~~a~~--~~~~av~v~p~----------------~v~~~~~~l~~~~~~v~~----~~~fp~g~~~~~~k 71 (203)
T cd00959 14 ATEEDIRKLCDEAKE--YGFAAVCVNPC----------------FVPLAREALKGSGVKVCT----VIGFPLGATTTEVK 71 (203)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEcHH----------------HHHHHHHHcCCCCcEEEE----EEecCCCCCcHHHH
Confidence 577888888888877 57888766421 233445555444433222 233322 334445
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
-.-++.|++.|.|.+-+...... .+.+..-+..+++. |. .+-+ |.-+ . ..+++.+...++.
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~---~lkv-I~e~----~----~l~~~~i~~a~ri 139 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGA---PLKV-ILET----G----LLTDEEIIKACEI 139 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCC---eEEE-EEec----C----CCCHHHHHHHHHH
Confidence 55589999999999888766552 23222222222222 44 3433 2222 1 3468899999999
Q ss_pred HHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEe--ecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 829 LVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVH--THDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 829 l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H--~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+.++|||.|-.. =+.+-.+|..+..+-+.++. .++|-.= .+ | ...+++-+++||+.+-+
T Consensus 140 a~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~---~v~ik~aGGik-t----~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 140 AIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGG---RVGVKAAGGIR-T----LEDALAMIEAGATRIGT 202 (203)
T ss_pred HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCC---CceEEEeCCCC-C----HHHHHHHHHhChhhccC
Confidence 999999988765 22234566777766666652 3454332 12 2 45667777889987744
No 290
>PRK15108 biotin synthase; Provisional
Probab=93.72 E-value=16 Score=44.25 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=132.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.++.+++++.|....+ .|+..+=.+++.. + ....+++.+..+.+.+....+...+ ..|+ .-.
T Consensus 75 ~ls~eEI~~~a~~~~~--~G~~~i~i~~~g~-~-----p~~~~~e~i~~~i~~ik~~~i~v~~----s~G~------ls~ 136 (345)
T PRK15108 75 LMEVEQVLESARKAKA--AGSTRFCMGAAWK-N-----PHERDMPYLEQMVQGVKAMGLETCM----TLGT------LSE 136 (345)
T ss_pred CCCHHHHHHHHHHHHH--cCCCEEEEEecCC-C-----CCcchHHHHHHHHHHHHhCCCEEEE----eCCc------CCH
Confidence 3899999999998887 7999884432211 0 0122345554443333322222111 1232 224
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
+.+++.+++|+|.+.+..-.+ +++.-...++.++++|+ .+...+.+. - .-+.+..++.
T Consensus 137 e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~---~v~sg~i~G----l----gEt~ed~v~~ 205 (345)
T PRK15108 137 SQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI---KVCSGGIVG----L----GETVKDRAGL 205 (345)
T ss_pred HHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCC---ceeeEEEEe----C----CCCHHHHHHH
Confidence 557888899999888744333 44566778889999998 665554444 1 2477888888
Q ss_pred HHHHHHC--CCCEEEE------ccc-c-C--cCCHHHHHHHHHHHHHHcCCceEEEeecC-CcchHHHHHHHHHHhcCCE
Q psy15244 826 AKQLVES--GAQVLCL------KDM-A-G--LLKPTAAKLLIGSFREKYPNILIHVHTHD-MAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 826 a~~l~~~--Gad~i~i------~Dt-~-G--~l~P~~~~~lv~~lr~~~p~ipi~~H~Hn-d~GlA~An~laAi~AGad~ 892 (1427)
+..+.++ ..+.|.+ +.| . + .+.|.+..+.|...|=-+|+..|.+=.-- +.|- -....|+.+||+.
T Consensus 206 ~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~--~~~~~~l~~Gan~ 283 (345)
T PRK15108 206 LLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANS 283 (345)
T ss_pred HHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh--hhHHHHHHcCCcE
Confidence 9888888 4566543 344 1 1 35778899999998877887554432221 2221 2457899999998
Q ss_pred EEecccc-CCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 893 VDVAADS-MSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 893 VD~av~G-mG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
+ -+.. +=-.+| -+.++.+.+++..|+.+
T Consensus 284 ~--~~g~~~ltt~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 284 I--FYGCKLLTTPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred E--EECCccccCCC-CCHHHHHHHHHHcCCCc
Confidence 8 2222 112233 47789999999887764
No 291
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=93.62 E-value=12 Score=43.20 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc----ChH-HHHHHHHHhCCCCceeeeecccccccccCCCcc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE----CPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e----~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~n 753 (1427)
+.+++++-++.+.. .|.+.+|.- .| |+.. +.+ +.+..+++..++.++-.-+|..+-=|-....+.
T Consensus 26 ~~~e~~~~~~~~~~--~~aD~vElR----lD----~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~ 95 (253)
T PRK02412 26 TLEEVLAEALAISK--YDADIIEWR----AD----FLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDE 95 (253)
T ss_pred CHHHHHHHHHHHhh--cCCCEEEEE----ec----hhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHH
Confidence 45677777776666 588999962 12 2222 111 234566677777888888886544344444555
Q ss_pred hHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 754 EVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 754 vv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
...+.++.+.+.| +|.+-|=...+ -+.+...++.+++.|. .+ -++|- ||... -+.+.+.++.+++.+.
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~-~~~~~~l~~~~~~~~~---kv--I~S~H-~f~~t----P~~~~l~~~~~~~~~~ 164 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSG-KDVVKEMVAFAHEHGV---KV--VLSYH-DFEKT----PPKEEIVERLRKMESL 164 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCC-hHHHHHHHHHHHHcCC---EE--EEeeC-CCCCC----cCHHHHHHHHHHHHHh
Confidence 5666788889999 88888765433 3556777777777766 33 33443 23111 2335688899999999
Q ss_pred CCCEEEEccccCcCCHHHHHHHHHHHHH---HcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 833 GAQVLCLKDMAGLLKPTAAKLLIGSFRE---KYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P~~~~~lv~~lr~---~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
|||++-|+=|+- .+.++.+++...++ ..++.|+-.=+=-. +|..+=+.+-..|--+.-+++.. ..-+||++.
T Consensus 165 gaDivKia~~a~--~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~--~G~~SRil~~~~GS~~ty~~~~~-~sAPGQ~~~ 239 (253)
T PRK02412 165 GADIVKIAVMPQ--SEQDVLTLLNATREMKELYADQPLITMSMGK--LGRISRLAGEVFGSSWTFASLDK-ASAPGQISV 239 (253)
T ss_pred CCCEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCCEEEEeCCC--CchHHHcchhhhCCcceecCCCC-CCCCCCCCH
Confidence 999999875543 45677777766543 22456754322222 23345566677787777666654 457999999
Q ss_pred HHHHHHHHhCC
Q psy15244 910 GTIVSCLENTD 920 (1427)
Q Consensus 910 E~vv~~L~~~g 920 (1427)
+++...++..+
T Consensus 240 ~el~~i~~~l~ 250 (253)
T PRK02412 240 EDLRRILEILH 250 (253)
T ss_pred HHHHHHHHHhc
Confidence 99988887653
No 292
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=93.57 E-value=6.1 Score=44.64 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=107.4
Q ss_pred CCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccccccc--CC
Q psy15244 673 LLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYS--NY 750 (1427)
Q Consensus 673 l~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~--~~ 750 (1427)
++....+.+|+.++++.-.+ -|+.++-+.. ..+...++.+.++.+..- ..+||- ..
T Consensus 14 ~L~p~~t~~~i~~~~~~A~~--~~~~avcv~p----------------~~v~~a~~~l~~~~v~v~----tVigFP~G~~ 71 (221)
T PRK00507 14 LLKPEATEEDIDKLCDEAKE--YGFASVCVNP----------------SYVKLAAELLKGSDVKVC----TVIGFPLGAN 71 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHH--hCCeEEEECH----------------HHHHHHHHHhCCCCCeEE----EEecccCCCC
Confidence 34445778888888887766 5888776542 234455555554432221 134442 22
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+-...-.-++.|.+.|.+.+.+....+. ++.+..-+..+++. +. .+-+-+. .+ ..+.+.+.
T Consensus 72 ~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~---~lKvIlE------t~---~L~~e~i~ 139 (221)
T PRK00507 72 TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGA---VLKVIIE------TC---LLTDEEKV 139 (221)
T ss_pred hHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCc---eEEEEee------cC---cCCHHHHH
Confidence 3333445578899999999998877764 45555556655553 32 3333222 22 35677889
Q ss_pred HHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++.+.++|+| .||=+.|....-...+-|+.+++..+ .++|-.=.== .....+++-++|||+.|-+|
T Consensus 140 ~a~~~~~~agad--fIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGI---rt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 140 KACEIAKEAGAD--FVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGI---RTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHhCCC--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCc---CCHHHHHHHHHcCcceEccC
Confidence 999999999999 45544554322223333444444442 2343221100 01456778889999999654
No 293
>PRK09234 fbiC FO synthase; Reviewed
Probab=93.48 E-value=2.7 Score=56.29 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=140.4
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~ 749 (1427)
+..++.+++++.|....+ .|+..+-+-||-..+-... .-.+-++.+++..|++.+..+..- ....|+
T Consensus 554 ~y~Ls~eeI~~~a~ea~~--~G~tev~i~gG~~p~~~~~----~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl-- 625 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWV--AGATEVCMQGGIHPELPGT----GYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGL-- 625 (843)
T ss_pred cccCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCcCHH----HHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCC--
Confidence 567999999999998887 7999988876643221111 112346888888888877654220 011122
Q ss_pred CCcchHHHHHHHHHhcCCCEEE-----Eecc---------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFR-----VFDP---------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~r-----if~~---------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
..++.+++.+++|+|.+. ||+. .-..+.-.+.++.|++.|+ .+..++.|.-
T Consensus 626 ----~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi---~~~stmm~G~-------- 690 (843)
T PRK09234 626 ----SIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL---RSSSTMMYGH-------- 690 (843)
T ss_pred ----CHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC---CcccceEEcC--------
Confidence 245678899999999773 3332 1123344578899999999 7777777762
Q ss_pred CCCHHHHHHHHHHHHHCCCC------EEE----Eccc----cC----cCCHHHHHHHHHHHHHHcCC-c-eEEEeecCCc
Q psy15244 816 KYSLNYYEDLAKQLVESGAQ------VLC----LKDM----AG----LLKPTAAKLLIGSFREKYPN-I-LIHVHTHDMA 875 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad------~i~----i~Dt----~G----~l~P~~~~~lv~~lr~~~p~-i-pi~~H~Hnd~ 875 (1427)
.-+.+..++.+..+.+.+.+ .|- -.+| .| .+++.+...++...|=-+|+ + .|..-. .++
T Consensus 691 ~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~l 769 (843)
T PRK09234 691 VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKL 769 (843)
T ss_pred CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhc
Confidence 25778888888888887653 222 1222 12 26777787777777655653 2 232222 344
Q ss_pred chHHHHHHHHHHhcCCEEEecc-----ccCCCCC-C-CCcHHHHHHHHHhCCCC
Q psy15244 876 GTGVATTLACVKAGADIVDVAA-----DSMSGIC-S-QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av-----~GmG~~t-g-n~~lE~vv~~L~~~g~~ 922 (1427)
|. .....++.+||+-+++|+ +.++|.. | .++.+++....+..|+.
T Consensus 770 g~--~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 770 GV--EGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred CH--HHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 43 345788999999887765 4444433 2 35678888888877643
No 294
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.41 E-value=2.6 Score=49.41 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccC----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
..+.++.+.+.|+|.+-+-.+. ++.+.+.+.++.+++. +. -+.+- . .+ ..+.+...
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~---pv~vK--l-----~~---~~~~~~~~ 179 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDI---PLLVK--L-----SP---YFDLEDIV 179 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCC---CEEEE--e-----CC---CCCHHHHH
Confidence 4456777788899998886653 2456677778888765 33 11111 1 22 25677899
Q ss_pred HHHHHHHHCCCCEEEEccccC-------------------cCCH---HHHHHHHHHHHHHcC-CceEEEeecCCcchHHH
Q psy15244 824 DLAKQLVESGAQVLCLKDMAG-------------------LLKP---TAAKLLIGSFREKYP-NILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G-------------------~l~P---~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~A 880 (1427)
++++.+.++|+|.|.+..+.+ +.-+ ....++++.+++.+| ++||-.=.--+.+ .
T Consensus 180 ~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~---~ 256 (289)
T cd02810 180 ELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG---E 256 (289)
T ss_pred HHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH---H
Confidence 999999999999998864432 1111 124667889998886 7887654443333 5
Q ss_pred HHHHHHHhcCCEEEeccccC
Q psy15244 881 TTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~Gm 900 (1427)
.+.+++.+|||.|-.+-.-|
T Consensus 257 da~~~l~~GAd~V~vg~a~~ 276 (289)
T cd02810 257 DVLEMLMAGASAVQVATALM 276 (289)
T ss_pred HHHHHHHcCccHheEcHHHH
Confidence 56667778999886654333
No 295
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.30 E-value=0.54 Score=57.28 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..+.++++.++|+|.|.| |++. ..+..+.++|+.+|+.+|+++|-+.-=.| ...+..++++|||.|-+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE
Confidence 567899999999999998 7766 44688999999999999998876654333 45568899999999985
No 296
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=93.23 E-value=0.8 Score=53.65 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCC----hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccC----CCC---CCCCCCHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLN----SVPNLVKGMDAVQQVTGGSTIVEATICYAGDL----TNP---NKKKYSLNYYED 824 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~n----d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~----~~p---~~~~~~~~~~~~ 824 (1427)
.+++.+|+++|.+.+-+=.|.- ++++-++.++.|+..|. .||+-|-..+.- ..+ ...-++++...+
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv---~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~ 162 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGV---SVEAELGHIGGKEDGIESEEETESLYTDPEEAKE 162 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT----EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCC---EEEEEeeeeeccCCCccccccccccccCHHHHHH
Confidence 4568999999999884433333 34466788999999999 889887766511 110 112246676666
Q ss_pred HHHHHHHCCCCEEEEccccC------cC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 825 LAKQLVESGAQVLCLKDMAG------LL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~Dt~G------~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+++ +.|+|.|.++ .| -. +|.-=.++++.+++.+|++||.+|. .+|+.--....|+..|+.-|+..
T Consensus 163 Fv~---~TgvD~LAva--iGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 163 FVE---ETGVDALAVA--IGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp HHH---HHTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEES
T ss_pred HHH---HhCCCEEEEe--cCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEEe
Confidence 554 4599987774 44 22 6666678899999998788877665 67888889999999999999876
Q ss_pred c
Q psy15244 897 A 897 (1427)
Q Consensus 897 v 897 (1427)
.
T Consensus 236 T 236 (287)
T PF01116_consen 236 T 236 (287)
T ss_dssp H
T ss_pred h
Confidence 4
No 297
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.22 E-value=4.2 Score=47.89 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccC-----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL-----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~-----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
....++++.+.|+|.|-+-.+. ++.+.+.+.++.+++. +. -+.+- . +| +.+..
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---Pv~vK--l-----~~-----~~~~~ 168 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---PVIVK--L-----TP-----NVTDI 168 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---CEEEE--e-----CC-----CchhH
Confidence 3445666677899998884432 3556777788888876 44 22221 1 22 22357
Q ss_pred HHHHHHHHHCCCCEEEEccccCc------------------CCH----HHHHHHHHHHHHHcCCceEEEeecCCcch-HH
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGL------------------LKP----TAAKLLIGSFREKYPNILIHVHTHDMAGT-GV 879 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~------------------l~P----~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl-A~ 879 (1427)
.++++.+.++|+|.|.+.+|.+- +.+ ....++++.+++.+ ++||-.= -|. -.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~----GGI~~~ 243 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGV----GGIASG 243 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEEE----CCCCCH
Confidence 88999999999998887654321 111 12457888899887 7887542 233 23
Q ss_pred HHHHHHHHhcCCEEEeccccCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG 901 (1427)
..+.+++++|||.|..+-.-+.
T Consensus 244 ~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 244 EDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHHHHHcCCCEEEEchhhhc
Confidence 6778888999999988766554
No 298
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.15 E-value=1.4 Score=51.38 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
++|.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-+-+.+. .++. ..++++...+++
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv---~VEaElG~vgg--~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGV---PVEAELGAILG--KEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEeccCCC--ccccccccccccCCHHHHHHHH
Confidence 46889999999998774444444 344678889999998 78887777642 2221 134666665544
Q ss_pred HHHHHCCCCEEEEcc--ccCcCC-HHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLKD--MAGLLK-PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~D--t~G~l~-P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+ +.|+|.+.++= .=|.-+ |.-=.++++.+++.. ++||.+|. .+|..-.....|++.|+.-|+...
T Consensus 163 ~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~-~vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 163 E---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS-PVPLVIHG--GSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred H---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC-CCCEEEeC--CCCCCHHHHHHHHHcCCcEEEECH
Confidence 4 45899776641 112111 443357888898887 78887776 558888889999999999997753
No 299
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=93.15 E-value=2.7 Score=48.67 Aligned_cols=209 Identities=10% Similarity=0.068 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC-CCc--------
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN-YSP-------- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~-~~~-------- 752 (1427)
++.+.++.+.+ .|+..||+|++-.-.-. .-+.....+.++.+.+.. +..+..+..+.+...+.. .++
T Consensus 14 ~l~~~l~~~~~--~G~~~vEl~~~~~~~~~-~~~~~~~~~~l~~~~~~~-gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~ 89 (275)
T PRK09856 14 PIEHAFRDASE--LGYDGIEIWGGRPHAFA-PDLKAGGIKQIKALAQTY-QMPIIGYTPETNGYPYNMMLGDEHMRRESL 89 (275)
T ss_pred CHHHHHHHHHH--cCCCEEEEccCCccccc-cccCchHHHHHHHHHHHc-CCeEEEecCcccCcCccccCCCHHHHHHHH
Confidence 35556666677 79999999864220000 001112234444333322 223323322222211110 122
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--CCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--KKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--~~~~ 818 (1427)
+.++..++.|...|.+.++++-.-. -++.++...+.|++.|. .+ ++-.. .|.. ...+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l--~iE~~----~~~~~~~~~t 160 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM---DL--ILEPL----TPYESNVVCN 160 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---EE--EEecC----CCCcccccCC
Confidence 2344566788899999998864321 12467788888888887 22 11111 1211 1235
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcC-CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLL-KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l-~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
.+.+.++++.+-. ...-...|+.-.. ......+.++.+ ++--.++|.+|..+-. +. -
T Consensus 161 ~~~~~~l~~~~~~--~~v~~~~D~~h~~~~~~~~~~~i~~~----~~rI~~vHi~D~~~~~---------------~~-~ 218 (275)
T PRK09856 161 ANDVLHALALVPS--PRLFSMVDICAPYVQAEPVMSYFDKL----GDKLRHLHIVDSDGAS---------------DT-H 218 (275)
T ss_pred HHHHHHHHHHcCC--CcceeEEeecchhcCCCCHHHHHHHh----CCcEEEEEEEcCCCCC---------------CC-C
Confidence 6666666654421 2222334774321 122233333333 3455799999987521 11 1
Q ss_pred ccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 898 DSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 898 ~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
... +.|..+...++.+|+..|++--+.+
T Consensus 219 ~~p--G~G~id~~~i~~~L~~~gy~g~~~l 246 (275)
T PRK09856 219 YIP--GEGKMPLRELMRDIIDRGYEGYCTV 246 (275)
T ss_pred cCC--CCCCCCHHHHHHHHHHcCCCceEEE
Confidence 122 3478899999999999987644444
No 300
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.14 E-value=0.33 Score=52.71 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCC
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSG 902 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~ 902 (1427)
++-++++.++|+|+|.| |-..-..|....+||+.+|+++ ..+---|-+ +...+.|.++|+|+|-+|++|.=+
T Consensus 54 ~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADist-----~ee~~~A~~~G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 54 LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADIST-----LEEAINAAELGFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SS-----HHHHHHHHHTT-SEEE-TTTTSST
T ss_pred HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecCC-----HHHHHHHHHcCCCEEEcccccCCC
Confidence 34577888999999998 8888899999999999999997 555555533 678899999999999999999865
Q ss_pred CC
Q psy15244 903 IC 904 (1427)
Q Consensus 903 ~t 904 (1427)
-+
T Consensus 126 ~t 127 (192)
T PF04131_consen 126 YT 127 (192)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 301
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=93.08 E-value=5.1 Score=44.90 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=108.2
Q ss_pred CCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--
Q psy15244 672 SLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN-- 749 (1427)
Q Consensus 672 sl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~-- 749 (1427)
+++....+.+++.++++.-.+ .|+.++-+. |+ .+...++.+.++.... ...+||-.
T Consensus 9 t~L~p~~t~~~i~~lc~~A~~--~~~~avcv~---------------p~-~v~~a~~~l~~~~v~v----~tVigFP~G~ 66 (211)
T TIGR00126 9 TALKADTTEEDIITLCAQAKT--YKFAAVCVN---------------PS-YVPLAKELLKGTEVRI----CTVVGFPLGA 66 (211)
T ss_pred cCCCCCCCHHHHHHHHHHHHh--hCCcEEEeC---------------HH-HHHHHHHHcCCCCCeE----EEEeCCCCCC
Confidence 344556788999999888776 588777653 21 3455566555543222 12455532
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
.+-.+.-.-++.|++.|.|.+-+......+ +.+..-+..+++. |. .+-+ |--++ ..+.+.+
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~---~lKv-IlE~~--------~L~~~ei 134 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGV---LLKV-IIETG--------LLTDEEI 134 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCC---eEEE-EEecC--------CCCHHHH
Confidence 344455556889999999998888777643 3333333333322 44 3433 22221 3555788
Q ss_pred HHHHHHHHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEe-ecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 823 EDLAKQLVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVH-THDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H-~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
...++.+.++|||.|-.. =+.+-.+|.++..+-+.++.. ++|-.= ...| ...+++-+++||+.+-++
T Consensus 135 ~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~---v~IKaaGGirt----~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 135 RKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDT---IGVKASGGVRT----AEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccC---CeEEEeCCCCC----HHHHHHHHHHhhHHhCcc
Confidence 899999999999976543 112335667666655555432 333221 1112 356677788899988654
No 302
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.07 E-value=4.4 Score=49.48 Aligned_cols=191 Identities=19% Similarity=0.157 Sum_probs=116.7
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.|.. .++..+|+|-+- |+... .+-++.|++..|+.++-.-+.=. -+++.+
T Consensus 182 ~~~~~A~~i~~~l~~--~~~~~iKvG~~L-------~~~~G-~~iVk~Lr~~~~~~~I~~DLK~~-------Di~~~v-- 242 (391)
T PRK13307 182 PDLEEVERVLSQLPK--SDHIIIEAGTPL-------IKKFG-LEVISKIREVRPDAFIVADLKTL-------DTGNLE-- 242 (391)
T ss_pred CCHHHHHHHHHhccc--ccceEEEECHHH-------HHHhC-HHHHHHHHHhCCCCeEEEEeccc-------ChhhHH--
Confidence 345677888888865 345678987321 22222 35678888887776654444322 233332
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
++.+.++|+|.+-+-... ..+.+..+++.+++.|. .+.. +. .+|. ...+ .++.+ ..++|.+
T Consensus 243 -v~~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~Gi---kvgV--D~----lnp~---tp~e----~i~~l-~~~vD~V 303 (391)
T PRK13307 243 -ARMAADATADAVVISGLA-PISTIEKAIHEAQKTGI---YSIL--DM----LNVE---DPVK----LLESL-KVKPDVV 303 (391)
T ss_pred -HHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCC---EEEE--EE----cCCC---CHHH----HHHHh-hCCCCEE
Confidence 777889999998887654 56678999999999998 5433 22 2441 2223 33333 5688988
Q ss_pred EEc---cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHH
Q psy15244 838 CLK---DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVS 914 (1427)
Q Consensus 838 ~i~---Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~ 914 (1427)
.+- |.-+. .| ..+.++.+|+..++++|.+= -|....|.-.++++|||++=+. +.-++..+..+.+.
T Consensus 304 llht~vdp~~~-~~--~~~kI~~ikk~~~~~~I~Vd----GGI~~eti~~l~~aGADivVVG----saIf~a~Dp~~aak 372 (391)
T PRK13307 304 ELHRGIDEEGT-EH--AWGNIKEIKKAGGKILVAVA----GGVRVENVEEALKAGADILVVG----RAITKSKDVRRAAE 372 (391)
T ss_pred EEccccCCCcc-cc--hHHHHHHHHHhCCCCcEEEE----CCcCHHHHHHHHHcCCCEEEEe----HHHhCCCCHHHHHH
Confidence 765 33232 12 33467778776446666654 4788888889999999986222 11234445444444
Q ss_pred HHH
Q psy15244 915 CLE 917 (1427)
Q Consensus 915 ~L~ 917 (1427)
.++
T Consensus 373 ~l~ 375 (391)
T PRK13307 373 DFL 375 (391)
T ss_pred HHH
Confidence 444
No 303
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.04 E-value=3.2 Score=46.62 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.|.+ .|+..+|+. |-.++..+.++.+++..+.-+ .+++ |.-.| -+ .+.
T Consensus 23 ~~~~a~~~~~al~~--~Gi~~iEit----------~~~~~a~~~i~~l~~~~~~~p-~~~v-GaGTV------~~--~~~ 80 (213)
T PRK06552 23 SKEEALKISLAVIK--GGIKAIEVT----------YTNPFASEVIKELVELYKDDP-EVLI-GAGTV------LD--AVT 80 (213)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEE----------CCCccHHHHHHHHHHHcCCCC-CeEE-eeeeC------CC--HHH
Confidence 66889999999998 899999985 225677788999998875321 1111 21111 11 233
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.|.++|.+.+- .+.-+ ...++++++.|. .. + | +.+|+..+. ++.++|+|.|.
T Consensus 81 ~~~a~~aGA~Fiv--sP~~~----~~v~~~~~~~~i---~~-----i------P--G~~T~~E~~----~A~~~Gad~vk 134 (213)
T PRK06552 81 ARLAILAGAQFIV--SPSFN----RETAKICNLYQI---PY-----L------P--GCMTVTEIV----TALEAGSEIVK 134 (213)
T ss_pred HHHHHHcCCCEEE--CCCCC----HHHHHHHHHcCC---CE-----E------C--CcCCHHHHH----HHHHcCCCEEE
Confidence 8899999998753 22222 344566788888 11 1 2 145665544 34569999999
Q ss_pred E--ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 839 L--KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 839 i--~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+ +|..| |. .++.++..+|++|+. -+-|....|.-.-+++|++.+-+
T Consensus 135 lFPa~~~G---~~----~ik~l~~~~p~ip~~----atGGI~~~N~~~~l~aGa~~vav 182 (213)
T PRK06552 135 LFPGSTLG---PS----FIKAIKGPLPQVNVM----VTGGVNLDNVKDWFAAGADAVGI 182 (213)
T ss_pred ECCcccCC---HH----HHHHHhhhCCCCEEE----EECCCCHHHHHHHHHCCCcEEEE
Confidence 8 34433 44 477778888888865 35688889999999999998733
No 304
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.02 E-value=0.55 Score=54.08 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=59.4
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++|||+|+ |+ +..+++.+.+.|+++++..............-...+..+ -++.+.+.++++++++|+|+-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g--------~l~~~~l~~~l~~~~i~~VID 71 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG--------ALDPQELREFLKRHSIDILVD 71 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC--------CCCHHHHHHHHHhcCCCEEEE
Confidence 37999997 66 999999999999998876555443222111111123322 256778889999999988874
Q ss_pred CCC-cccccH-HHHHHHHHCCCcee
Q psy15244 137 GYG-FLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 137 g~g-flsE~~-~~a~~~e~~Gi~fi 159 (1427)
..- |..+.. ...++|.+.||+++
T Consensus 72 AtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 72 ATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 422 222221 34567777777766
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.00 E-value=1.8 Score=54.60 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC---------hHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN---------SVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n---------d~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
....+.++...++++..+-|.+.-+ |+......-.++++. |. ..|.+++. ..++ .
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~Gr--L~Vgaavg------------~~~~-~ 242 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQ--LLVGAAIS------------TRPE-D 242 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCC--EEEEEEEC------------CCHH-H
Confidence 3345556667777887776665432 332222222334432 32 12222211 1223 3
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecccc
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADS 899 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~G 899 (1427)
.+.++.+.++|+|.|.| |++---++. +.+.|+.||+.+|+++|.. -.......+..+++||||.|.+++.+
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g~ 313 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMGS 313 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCcC
Confidence 78899999999999988 655434444 5778999999999999887 12333467889999999999986543
No 306
>PRK06256 biotin synthase; Validated
Probab=92.97 E-value=12 Score=44.79 Aligned_cols=211 Identities=14% Similarity=0.086 Sum_probs=127.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEecc-CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMW-GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~-ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
++.+++++.++.+.+ .|+..+-+. +|-..+. +. -+.-++-++.+++. ++..+.. . .|. +-.
T Consensus 91 ~s~eeI~~~~~~~~~--~g~~~~~l~~~g~~p~~--~~-~~~~~e~i~~i~~~-~~i~~~~--~----~g~------l~~ 152 (336)
T PRK06256 91 LDIEELIEAAKEAIE--EGAGTFCIVASGRGPSG--KE-VDQVVEAVKAIKEE-TDLEICA--C----LGL------LTE 152 (336)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEecCCCCCc--hH-HHHHHHHHHHHHhc-CCCcEEe--c----CCc------CCH
Confidence 688999999998887 687655442 2221110 00 01122344555544 3333221 1 122 234
Q ss_pred HHHHHHHhcCCCEEEE-eccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRV-FDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~ri-f~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+.+++.+++|++.+.+ +.+ | +.+....+++.++++|+ .+...+.+. - .-+.+.+.+
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~G----l----gEt~ed~~~ 220 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIG----M----GESLEDRVE 220 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEe----C----CCCHHHHHH
Confidence 5678888999998876 333 4 23466688999999998 555444332 1 257788889
Q ss_pred HHHHHHHCCCCEEEE------ccc----cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 825 LAKQLVESGAQVLCL------KDM----AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i------~Dt----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.++.+.+.|++.+.+ +.| ...+.|.++.+++..+|-.+|+..|-+=++-..-++-.- -+++ +||+.+
T Consensus 221 ~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~- 297 (336)
T PRK06256 221 HAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSV- 297 (336)
T ss_pred HHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCcee-
Confidence 999999999987665 233 124678899999999998899888766555422222111 2333 698876
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
-++++=-..|++..++ ..+++..|+..
T Consensus 298 -~~g~~lt~~g~~~~~d-~~~~~~~g~~~ 324 (336)
T PRK06256 298 -IVGNYLTTVGQPATAD-LDMIEDLGFEI 324 (336)
T ss_pred -eECCcccCCCCChHHH-HHHHHHCCCCc
Confidence 3334434566665544 44677777654
No 307
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=92.92 E-value=3.2 Score=50.65 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=90.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..|+.+++.++++.+.+ .|+..|-+.||-. +++.+-++.++.+++. +....+..-|. . +-
T Consensus 44 ~~~~~e~~~~ii~~~~~--~g~~~v~~~GGEP------ll~~~~~~il~~~~~~--g~~~~i~TNG~---l-------l~ 103 (378)
T PRK05301 44 AELSTEEWIRVLREARA--LGALQLHFSGGEP------LLRKDLEELVAHAREL--GLYTNLITSGV---G-------LT 103 (378)
T ss_pred CCCCHHHHHHHHHHHHH--cCCcEEEEECCcc------CCchhHHHHHHHHHHc--CCcEEEECCCc---c-------CC
Confidence 35889999999999888 6999998887764 5666655666666653 33444444332 1 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
++.++...+.|++.+.|..--.+ .+....+++.+++.|. .+......+ +.+.+.+
T Consensus 104 ~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~---~v~i~~vv~---------~~N~~~i 171 (378)
T PRK05301 104 EARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY---PLTLNAVIH---------RHNIDQI 171 (378)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC---ceEEEEEee---------cCCHHHH
Confidence 34466777889998777554321 2344567778888887 544433333 5788999
Q ss_pred HHHHHHHHHCCCCEEEEc
Q psy15244 823 EDLAKQLVESGAQVLCLK 840 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~ 840 (1427)
.++++.+.+.|++.+.+.
T Consensus 172 ~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 172 PRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999988764
No 308
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=92.87 E-value=9.6 Score=42.16 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=103.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
+......+.++.+.+ .|++.||+. .|- |-. -+. -.++.++.+++. ++.++...+... + .
T Consensus 8 ~~~~~~~~~~~~~~~--~g~d~i~~~~~Dg~-~~~---~~~-~~~~~v~~i~~~-~~~~v~v~lm~~----------~-~ 68 (210)
T TIGR01163 8 ADFARLGEEVKAVEE--AGADWIHVDVMDGH-FVP---NLT-FGPPVLEALRKY-TDLPIDVHLMVE----------N-P 68 (210)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEcCCCCC-CCC---Ccc-cCHHHHHHHHhc-CCCcEEEEeeeC----------C-H
Confidence 344567778888888 799999985 111 100 111 235778888864 555543322221 1 3
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..|++.+.++|+|.+.+-+... +.+...++.+++.|. ..... . ++ ....+.+ +++. .++|
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~--~~~~~~~~~~~~~g~---~~~~~--~-----~~---~t~~e~~----~~~~-~~~d 128 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS--EHIHRLLQLIKDLGA---KAGIV--L-----NP---ATPLEFL----EYVL-PDVD 128 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc--hhHHHHHHHHHHcCC---cEEEE--E-----CC---CCCHHHH----HHHH-hhCC
Confidence 5689999999999977755433 456777788888887 33222 1 22 1223333 3332 3578
Q ss_pred EEEE----ccccCcCCHHHHHHHHHHHHHHc----CCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 836 VLCL----KDMAGLLKPTAAKLLIGSFREKY----PNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 836 ~i~i----~Dt~G~l~P~~~~~lv~~lr~~~----p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.+ .-+.|-..+....+.++.+++.. |++||.+= .|....|.-.++++|||.+=+.
T Consensus 129 ~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 129 LVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred EEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEEEC
Confidence 7655 22344322333445566666543 23566543 3777888888899999987443
No 309
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=92.84 E-value=0.26 Score=59.18 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|+..+|.++.||.+ .. |..-+.+|-+ .....|.||..|+|.++.|
T Consensus 16 ~g~~~~~~~~~g~~v-----------~~-~~~~~~~e~~----------------------k~~~~~~a~~~g~~~~~~~ 61 (371)
T PRK14875 16 EGKVAGWLVQEGDEV-----------EK-GDELLDVETD----------------------KITNEVEAPAAGTLRRQVA 61 (371)
T ss_pred eEEEEEEEcCCCCEe-----------CC-CCEEEEEEec----------------------ceeEEEecCCCeEEEEEEc
Confidence 578888988999886 22 3332322211 1235699999999999999
Q ss_pred cCCCEEecCCEEEEEEcCC
Q psy15244 1374 KVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamK 1392 (1427)
++|+.|+.||+|+.++..+
T Consensus 62 ~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 62 QEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCCCEeCCCCEEEEEecCC
Confidence 9999999999999998653
No 310
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=92.83 E-value=0.23 Score=68.76 Aligned_cols=65 Identities=29% Similarity=0.527 Sum_probs=59.7
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE-----cCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS-----VMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie-----amKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.|||+|+|++|+|++||.|++||+|++|| - +|.||.+|+|+++++++|+.|..|++|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~-----~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEM-----PVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeE-----EEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 346899999999999999999999999999853 4 5889999999999999999999999999885
No 311
>PRK05926 hypothetical protein; Provisional
Probab=92.75 E-value=3.1 Score=50.61 Aligned_cols=223 Identities=12% Similarity=0.102 Sum_probs=129.7
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
+..++.+++++.|+.. + .|+..+=+-+|-..+-.+.++ .+.++.+++..|++.+..++ +......+....-.
T Consensus 96 ~~~ls~eeI~~~a~~a-~--~G~~ei~iv~G~~p~~~~e~~----~e~i~~Ik~~~p~i~i~a~s-~~Ei~~~~~~~~~~ 167 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-P--SPITETHIVAGCFPSCNLAYY----EELFSKIKQNFPDLHIKALT-AIEYAYLSKLDNLP 167 (370)
T ss_pred cccCCHHHHHHHHHHH-h--cCCCEEEEEeCcCCCCCHHHH----HHHHHHHHHhCCCeeEEECC-HHHHHHHHhhcCCC
Confidence 4568999999999987 5 588777665554432111121 23467788888877755442 10000001111122
Q ss_pred HHHHHHHHHhcCCCEEEEe--cc------------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVF--DP------------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif--~~------------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
.++.+++.+++|++.+..- .. ....++-.++++.++++|+ .+..++.|.- .-+++
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi---~~~sgmi~G~--------gEt~e 236 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGI---PSNATMLCYH--------RETPE 236 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---cccCceEEeC--------CCCHH
Confidence 4666888999999876642 11 1123556688999999999 6666666641 35778
Q ss_pred HHHHHHHHHHHCCCCEEEE----------cccc-C-------cCCHHHHHHHHHHHH---HHcCCceEEEeecCCcchHH
Q psy15244 821 YYEDLAKQLVESGAQVLCL----------KDMA-G-------LLKPTAAKLLIGSFR---EKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i----------~Dt~-G-------~l~P~~~~~lv~~lr---~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
..++.+..+.+.+.+.+.+ ++|- | ...+.....++.-.| .++|.+...+ +..| .
T Consensus 237 drv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~G--~ 311 (370)
T PRK05926 237 DIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYLG--I 311 (370)
T ss_pred HHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhcC--H
Confidence 8888888888886654322 2332 1 133443333333322 2234444444 3334 4
Q ss_pred HHHHHHHHhcCCEEEecccc-----CCC-CCC-CCcHHHHHHHHHhCCC
Q psy15244 880 ATTLACVKAGADIVDVAADS-----MSG-ICS-QPAMGTIVSCLENTDK 921 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~G-----mG~-~tg-n~~lE~vv~~L~~~g~ 921 (1427)
..+..|+.+||+-+++|+.. +.| .++ ..+.+++....+..|+
T Consensus 312 ~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~ 360 (370)
T PRK05926 312 EVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGR 360 (370)
T ss_pred HHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCC
Confidence 56688999999999998753 111 122 1245666666665554
No 312
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=92.73 E-value=5.1 Score=46.31 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc------cccCcCCHHH---HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLK------DMAGLLKPTA---AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~------Dt~G~l~P~~---~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
..+.+..++.+++..+.|||.|-|. +..++..-.+ +..+|+.+++.+ ++||.+-+=+ ...+.+|+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~-----~~v~e~al 93 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFR-----AEVARAAL 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCC-----HHHHHHHH
Confidence 3689999999999999999999984 2222222233 444578888877 8899886655 45667899
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC------CCC--C-----------hhhHHHHHHHHHHHhCCCCCC
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR------CGI--D-----------LHDVCDYSSYWRKVRELYAPA 947 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~------tgi--d-----------l~~L~~l~~~v~~~~g~~~~~ 947 (1427)
++|+++|+-- +|. ...+. ++..+++.|.. .++ + .+.+..+.+.++.....-++.
T Consensus 94 ~~G~~iINdi-sg~---~~~~~---~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~ 166 (257)
T cd00739 94 EAGADIINDV-SGG---SDDPA---MLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVAR 166 (257)
T ss_pred HhCCCEEEeC-CCC---CCChH---HHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999998743 332 22233 33333333211 111 0 123334455566666666665
Q ss_pred CCcccccch-hhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC-------ccHHHHHHHHHHCCC---CHHH
Q psy15244 948 HNLLWRCGI-DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG-------GQYTNLKFRTMSFGL---DFED 1016 (1427)
Q Consensus 948 ~kpivG~~~-f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG-------g~~snl~~ql~~~gl---~~~e 1016 (1427)
++=++--++ |... ..+.-.+.+.-..+..+..|-+.|.++.-+++.+-+ +....+...+.+.|. |-.+
T Consensus 167 ~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~iiRvHd 245 (257)
T cd00739 167 NRIILDPGIGFGKT-PEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIVRVHD 245 (257)
T ss_pred HHEEEecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEEEeCC
Confidence 553332222 4333 344433333333343345455666655444443322 222344455667776 6555
Q ss_pred HHHHH
Q psy15244 1017 VKRAY 1021 (1427)
Q Consensus 1017 v~~~~ 1021 (1427)
|.+..
T Consensus 246 v~~~~ 250 (257)
T cd00739 246 VKATR 250 (257)
T ss_pred HHHHH
Confidence 55543
No 313
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.71 E-value=1.4 Score=52.61 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=80.4
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.|++.+.|-.. ++.|.. .++.+.+.|+ ..|--|| ..+++.+...++.+.+.|.+.|.
T Consensus 103 vd~l~~~~v~~~KI~S~--~~~n~~-LL~~va~~gk------PvilstG--------~~t~~Ei~~Av~~i~~~g~~~i~ 165 (327)
T TIGR03586 103 VDFLESLDVPAYKIASF--EITDLP-LIRYVAKTGK------PIIMSTG--------IATLEEIQEAVEACREAGCKDLV 165 (327)
T ss_pred HHHHHHcCCCEEEECCc--cccCHH-HHHHHHhcCC------cEEEECC--------CCCHHHHHHHHHHHHHCCCCcEE
Confidence 66667788998887653 333332 3444555677 1223332 46899999999999999987666
Q ss_pred E--ccccCcCCHHHHHHH--HHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 839 L--KDMAGLLKPTAAKLL--IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 839 i--~Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
| | +.+.-+|.....| |..|++.+ ++||++=-|- .| ....++|+.+||++|.
T Consensus 166 LlhC-~s~YP~~~~~~nL~~i~~lk~~f-~~pVG~SDHt-~G--~~~~~aAva~GA~iIE 220 (327)
T TIGR03586 166 LLKC-TSSYPAPLEDANLRTIPDLAERF-NVPVGLSDHT-LG--ILAPVAAVALGACVIE 220 (327)
T ss_pred EEec-CCCCCCCcccCCHHHHHHHHHHh-CCCEEeeCCC-Cc--hHHHHHHHHcCCCEEE
Confidence 6 6 6666666555443 78899999 8999996564 44 5778999999999886
No 314
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=92.53 E-value=0.3 Score=60.35 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
+|...+|.+++||.+ .. |..-+.+|-+ .....|.||..|+|.+|++
T Consensus 105 eG~I~~w~v~~GD~V-----------~~-Gq~L~~VEtd----------------------K~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 105 DGTLATFLKKPGERV-----------QA-DEAIAQIETD----------------------KVTIDIASPASGVIQEFLV 150 (463)
T ss_pred eEEEEEEEeCCCCEe-----------cC-CCEEEEEEec----------------------ceeeEEecCCCeEEEEEEe
Confidence 577888999999887 22 3322322211 1356799999999999999
Q ss_pred cCCCEEecCCEEEEEEc
Q psy15244 1374 KVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~iea 1390 (1427)
++||.|+.||+|+.|+.
T Consensus 151 ~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 151 KEGDTVEPGTKVAIISK 167 (463)
T ss_pred CCCCEecCCCEEEEecc
Confidence 99999999999999975
No 315
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.50 E-value=2.7 Score=48.63 Aligned_cols=212 Identities=12% Similarity=0.105 Sum_probs=127.5
Q ss_pred HHHHHhhcCCccEEeccCCC-chhhhhhccccChHHHH-HHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHh
Q psy15244 687 SPFVANRFNNLYSLEMWGGA-VSHTCLKFLKECPWERL-AELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764 (1427)
Q Consensus 687 a~~l~~~~~G~~~iE~~gga-tfd~~~rfl~e~p~erl-~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~ 764 (1427)
|..+.+ .||..|=..|.. ++.-.++-++...|+.+ ...+.....+.+-.+.=. --||.. |.|+ ...|+.+.+
T Consensus 31 A~la~~--aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~--dtGfG~-~~nv-artV~~~~~ 104 (289)
T COG2513 31 ALLAER--AGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDI--DTGFGE-ALNV-ARTVRELEQ 104 (289)
T ss_pred HHHHHH--cCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEec--cCCCCc-HHHH-HHHHHHHHH
Confidence 334445 799988765432 22223444455556543 333433333333333322 247877 7784 458899999
Q ss_pred cCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 765 AGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 765 ~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
+|+--++|=|.... ++.|-.-|++++++.. -....|+--.|-.. .--++.-++-++..++
T Consensus 105 aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~---~~~fvi~ARTda~~----~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 105 AGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARR---DPDFVIIARTDALL----VEGLDDAIERAQAYVE 177 (289)
T ss_pred cCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhcc---CCCeEEEeehHHHH----hccHHHHHHHHHHHHH
Confidence 99999999998873 4566666666666654 12233333322111 1227888899999999
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
+|||.|... |+-.++++..+.++++ . .+|+-+-.+--..+-... .--++|+++|-..... -|+.+..++.
T Consensus 178 AGAD~if~~---al~~~e~i~~f~~av~--~-pl~~N~t~~g~tp~~~~~--~L~~~Gv~~V~~~~~~--~raa~~a~~~ 247 (289)
T COG2513 178 AGADAIFPE---ALTDLEEIRAFAEAVP--V-PLPANITEFGKTPLLTVA--ELAELGVKRVSYGLTA--FRAALKAAEQ 247 (289)
T ss_pred cCCcEEccc---cCCCHHHHHHHHHhcC--C-CeeeEeeccCCCCCcCHH--HHHhcCceEEEECcHH--HHHHHHHHHH
Confidence 999999954 6777777777766665 3 255555444433433333 3346799999554433 4566667777
Q ss_pred HHHHHHhCCC
Q psy15244 912 IVSCLENTDK 921 (1427)
Q Consensus 912 vv~~L~~~g~ 921 (1427)
++..+...|.
T Consensus 248 ~~~~i~~~gt 257 (289)
T COG2513 248 AAREIRREGT 257 (289)
T ss_pred HHHHHHhcCc
Confidence 7777776653
No 316
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=92.49 E-value=0.31 Score=59.75 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|...+|.+++||.+ .. |..-+.+|-+- ....|.||..|+|.+++|
T Consensus 58 eg~I~~w~v~~Gd~V-----------~~-Gd~L~~vEtdK----------------------~~~ei~Ap~~G~v~~i~v 103 (418)
T PTZ00144 58 EGTVVEWKKKVGDYV-----------KE-DEVICIIETDK----------------------VSVDIRAPASGVITKIFA 103 (418)
T ss_pred eEEEEEEEeCCCCEe-----------CC-CCEEEEEEEcc----------------------eEEEEecCCCeEEEEEEe
Confidence 588899999999997 22 44334433221 345789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++||.|+.|++|++|+.-
T Consensus 104 ~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 104 EEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCCEecCCCEEEEEcCC
Confidence 999999999999999754
No 317
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.45 E-value=6.4 Score=44.68 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+.++.||+..|+.++-.-+- +++ ...+++.+.++|+|.+-+-...+. +.+..+++.+++.|. .+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm----------~~~-p~~~i~~~~~~Gad~itvH~ea~~-~~~~~~l~~ik~~G~---~~g 118 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM----------VSN-PEKWVDDFAKAGASQFTFHIEATE-DDPKAVARKIREAGM---KVG 118 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC----------CCC-HHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHCCC---eEE
Confidence 56788888877887665553 233 455788888999999877665543 337889999999998 665
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHH-----HHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCc
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLA-----KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a-----~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~ 875 (1427)
.++. |. ++.+.+..+. ..+.-+.++ ....|...-....+.++.+++.++...|.+ |-
T Consensus 119 val~-------p~---t~~e~l~~~l~~~~vD~Vl~m~v~----pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dG 180 (228)
T PTZ00170 119 VAIK-------PK---TPVEVLFPLIDTDLVDMVLVMTVE----PGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DG 180 (228)
T ss_pred EEEC-------CC---CCHHHHHHHHccchhhhHHhhhcc----cCCCCcEecHHHHHHHHHHHHhcccCeEEE----CC
Confidence 5443 32 3444444332 222211111 112233333345556778888776544443 56
Q ss_pred chHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|.-..|.-.+.++|||++=+ | +.-+++++.++.+..++
T Consensus 181 GI~~~ti~~~~~aGad~iVv---G-saI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 181 GINLETIDIAADAGANVIVA---G-SSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCCHHHHHHHHHcCCCEEEE---c-hHHhCCCCHHHHHHHHH
Confidence 88888999999999998833 2 22345555555555544
No 318
>PLN02389 biotin synthase
Probab=92.42 E-value=29 Score=42.55 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=128.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhh-cccc-ChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK-FLKE-CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~r-fl~e-~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
.++.+++++.|+.+.+ .|+..+=+..+ .+ ..++ .+++++.++-+.+....+.... ..|+ .
T Consensus 115 ~Ls~EeIl~~a~~~~~--~G~~~~~ivts------~rg~~~e~~~~e~i~eiir~ik~~~l~i~~----s~G~------l 176 (379)
T PLN02389 115 LMSKDDVLEAAKRAKE--AGSTRFCMGAA------WRDTVGRKTNFNQILEYVKEIRGMGMEVCC----TLGM------L 176 (379)
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEEec------ccCCCCChhHHHHHHHHHHHHhcCCcEEEE----CCCC------C
Confidence 5899999999998887 68887644210 00 0122 2355554444444333333221 1232 2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
..+.+++.+++|+|.+.+-.-.+ +++.-...++.+++.|+ .+...+.+. - .-+.+..+
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi---~v~sg~IiG----l----gEt~edrv 245 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGI---SVCSGGIIG----L----GEAEEDRV 245 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC---eEeEEEEEC----C----CCCHHHHH
Confidence 34567888899999877644433 23455678899999999 666665554 1 24667777
Q ss_pred HHHHHHHHC--CCCEEEE------ccc--c--CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 824 DLAKQLVES--GAQVLCL------KDM--A--GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 824 ~~a~~l~~~--Gad~i~i------~Dt--~--G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
+.+..+.+. ..+.+.| +.| . ..++|.+..+.|...|-.+|+..|.+-.-- .-++......|+.+||+
T Consensus 246 ~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN 324 (379)
T PLN02389 246 GLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGAN 324 (379)
T ss_pred HHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCC
Confidence 777888777 4565543 244 2 247788899999999888887655432211 11122345789999999
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 892 ~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
.+= ++++==.|...+.++=..+++..|+..
T Consensus 325 ~~~--~g~~~Ltt~g~~~~~d~~~~~~lg~~~ 354 (379)
T PLN02389 325 SIF--TGDKLLTTPNNDFDADQAMFKELGLIP 354 (379)
T ss_pred EEE--ECCcccCCCCCChHHHHHHHHHcCCCc
Confidence 762 222201133345555567778777654
No 319
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.35 E-value=0.2 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK 1392 (1427)
.|.||+.|.|..+.++.|+.|.+|++|+.|..++
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence 3789999999999999999999999999998753
No 320
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.30 E-value=1.5 Score=52.34 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCc
Q psy15244 718 CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 718 ~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~ 797 (1427)
-||+.++.|.+...+.-+..+.. |-+.. .++...+.|++.+.|... ++.|.. .++++.+.|+
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~st----------pfd~~--svd~l~~~~v~~~KIaS~--~~~n~p-LL~~~A~~gk--- 134 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLST----------PFDLE--SADFLEDLGVPRFKIPSG--EITNAP-LLKKIARFGK--- 134 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEE----------eCCHH--HHHHHHhcCCCEEEECcc--cccCHH-HHHHHHhcCC---
Confidence 56677777777766555555543 22322 367777889999888654 333322 3455566677
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEE--ccccCcCCHHHHHHH--HHHHHHHcCCceEEEee
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ--VLCL--KDMAGLLKPTAAKLL--IGSFREKYPNILIHVHT 871 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad--~i~i--~Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~ 871 (1427)
..|.-|| -.+++.+...++.+.+.|.+ .|.| | +.+.-.|..-..| |..|++.+ ++||++=.
T Consensus 135 ---PvilStG--------matl~Ei~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f-~~pVG~Sd 201 (329)
T TIGR03569 135 ---PVILSTG--------MATLEEIEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAF-DLPVGYSD 201 (329)
T ss_pred ---cEEEECC--------CCCHHHHHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHh-CCCEEECC
Confidence 2233343 46899999999999999975 2444 5 5566666554443 78899999 79999966
Q ss_pred cCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 872 HDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 872 Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
|-+ | ....++|+..||++|.-
T Consensus 202 Ht~-G--~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 202 HTL-G--IEAPIAAVALGATVIEK 222 (329)
T ss_pred CCc-c--HHHHHHHHHcCCCEEEe
Confidence 653 4 56779999999999863
No 321
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=92.26 E-value=0.18 Score=57.33 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=41.6
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecC
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~ 1412 (1427)
+...++|..-++.|++||+|++||+|+.=-.. -+....||++|+|++|.--+
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence 45578898999999999999999999864211 34568999999999887533
No 322
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=92.18 E-value=3.8 Score=49.59 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=88.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..|+++++.++++.+.+ .|+..|-+.||-- +++++-++-++.+++. +..+.+..-|. . +-
T Consensus 35 ~~l~~e~~~~ii~~~~~--~g~~~v~~~GGEP------ll~~~~~~ii~~~~~~--g~~~~l~TNG~---l-------l~ 94 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAE--LGVLQLHFSGGEP------LARPDLVELVAHARRL--GLYTNLITSGV---G-------LT 94 (358)
T ss_pred CCCCHHHHHHHHHHHHh--cCCcEEEEeCccc------cccccHHHHHHHHHHc--CCeEEEEeCCc---c-------CC
Confidence 35889999999999988 6999998888754 4666655666666653 23344433331 1 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
++.++...++|++.+.|..--.+ .+....+++.+++.|. .+......+ +.+.+.+
T Consensus 95 ~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~---~v~v~~vv~---------~~N~~~l 162 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL---PLTLNFVIH---------RHNIDQI 162 (358)
T ss_pred HHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC---ceEEEEEec---------cCCHHHH
Confidence 34567777899998776543321 1233456677777887 444433333 6788999
Q ss_pred HHHHHHHHHCCCCEEEE
Q psy15244 823 EDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i 839 (1427)
.++++.+.+.|++.+.+
T Consensus 163 ~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 163 PEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998876
No 323
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=92.15 E-value=0.6 Score=47.20 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=62.0
Q ss_pred CEEEEEc----CCHHHHHHHHHHHHcCCEEEEEecCCCcc---Ccccccc------ceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 58 EKILIAN----RSEVAIRVARACNEMGIKSVGIYSEQDKF---SAHRTKV------DQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 58 kkVLIag----rGeia~riiraa~elGi~~vav~s~~d~~---s~~~~~a------De~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
|+|.|+| .+..+.++++.+++.|++++.|....+.. ..+..+. |-++..- ++ ....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~---~~----~~~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV---PP----DKVPEIVD 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S----H----HHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc---CH----HHHHHHHH
Confidence 5788998 56679999999999999999997665431 1222222 2222211 00 12456777
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~ea 165 (1427)
-|.+.++..++-..| .++.++.+.+++.|+.++||+---
T Consensus 74 ~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 777788998887776 466788999999999999987543
No 324
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=92.10 E-value=1.2 Score=51.09 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+.+|||+|+..-++.+++.+.+.|+++++........ . ... ...+..+ ...+.+.+.++++++++++|+
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-~-~~~-~~~v~~G-------~l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-P-ADL-PGPVRVG-------GFGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-c-ccC-CceEEEC-------CCCCHHHHHHHHHHCCCCEEE
Confidence 46789999988889999999999999876554433221 1 111 1122333 223889999999999998887
Q ss_pred eC-CCcccccH-HHHHHHHHCCCcee
Q psy15244 136 PG-YGFLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 136 pg-~gflsE~~-~~a~~~e~~Gi~fi 159 (1427)
-. .-|..+-. ...++|.+.||+++
T Consensus 71 DATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 71 DATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred ECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 44 23333322 34677888888876
No 325
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=92.05 E-value=1.6 Score=45.07 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=73.0
Q ss_pred CcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccc
Q psy15244 209 FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 209 yPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
-|+.|||....-.--=.++.+.++|...- ....+..+++.+.++-..|+.+.++. |+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEeec-----
Confidence 48999999855443334666666655211 12346789999999988899988864 466654221
Q ss_pred cccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCcEEEEeeCCCCC
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG-YSNAGTVEFLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg-~~G~~~VEflvd~dG~~yfIEINpRl~ 350 (1427)
+.. +....+ .++.+.+.+.+++.. .-.+..+++=++.+|+.++||+|+=-.
T Consensus 66 ~~~-------~~~~~~----~~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 66 RGD-------WDLEPD----PDVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred CCC-------cccCCC----HHHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 110 111122 344555555555442 336788999999888999999999443
No 326
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=92.00 E-value=0.37 Score=57.67 Aligned_cols=67 Identities=36% Similarity=0.473 Sum_probs=0.0
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcC-----------------------------------------------
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----------------------------------------------- 1391 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----------------------------------------------- 1391 (1427)
.|.+..+|.|.+|.|+..+.|++||+|+.|.--
T Consensus 55 ~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~ 134 (352)
T COG1566 55 PIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQN 134 (352)
T ss_pred EEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------------------------------------------------------CceeeeecC
Q psy15244 1392 -----------------------------------------------------------------------KTETLIHAS 1400 (1427)
Q Consensus 1392 -----------------------------------------------------------------------Kme~~i~Ap 1400 (1427)
=--+.|+||
T Consensus 135 ~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP 214 (352)
T COG1566 135 ELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAP 214 (352)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECC
Q ss_pred CCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1401 ADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1401 ~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++|+|.+..+.+|+.|.+|.+|+.+
T Consensus 215 ~dG~V~~~~v~~G~~V~~G~~l~al 239 (352)
T COG1566 215 VDGYVTNLSVRVGQYVSAGTPLMAL 239 (352)
T ss_pred CCceEEeecccCCCeecCCCceEEE
No 327
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=91.94 E-value=12 Score=47.05 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=128.3
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHH----HHHHHhCCC-CceeeeecccccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERL----AELRELIPN-IPFQMILRGNSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl----~~lr~~~p~-~~~qml~Rg~n~vgy~~ 749 (1427)
..+++.+++++-++.+.+ .|+..+=+-+|-.. ...+++.+ +.+++..+. ..+. . |+...
T Consensus 112 r~~Ls~EEI~~ea~~~~~--~G~~~i~LvsGe~p-------~~~~~eyi~e~i~~I~~~~~~~g~i~----~---v~ini 175 (469)
T PRK09613 112 RKKLTQEEIREEVKALED--MGHKRLALVAGEDP-------PNCDIEYILESIKTIYSTKHGNGEIR----R---VNVNI 175 (469)
T ss_pred ceECCHHHHHHHHHHHHH--CCCCEEEEEeCCCC-------CCCCHHHHHHHHHHHHHhccccCcce----e---eEEEe
Confidence 356899999999999988 78887665444320 12344444 444432211 1110 0 00111
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
.+-+ .+-.++.+++|++.+.+|--+. +.+.=..+++.|+++|+. .+...+-+ +-++
T Consensus 176 g~lt--~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~--~Vg~G~L~----GLge- 246 (469)
T PRK09613 176 APTT--VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGID--DVGIGVLF----GLYD- 246 (469)
T ss_pred ecCC--HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCC--eeCeEEEE----cCCC-
Confidence 2222 3347888999999988887664 334445688999999991 13322222 2332
Q ss_pred CCCCHHHHHHHHHHHH---HCCCCEEEEc------cc-----cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 815 KKYSLNYYEDLAKQLV---ESGAQVLCLK------DM-----AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~---~~Gad~i~i~------Dt-----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
++++.-.++.-++.|. ..|+|.|.+. +| --.+.+.+..++|..+|=.+|...|-+-++-...+=
T Consensus 247 ~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r-- 324 (469)
T PRK09613 247 YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR-- 324 (469)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH--
Confidence 1233222222233332 2267766543 43 123677899999999999999998989888875533
Q ss_pred HHHHHHHhcCCEEEeccc-cCCCCCC--------C------CcHHHHHHHHHhCCCCC
Q psy15244 881 TTLACVKAGADIVDVAAD-SMSGICS--------Q------PAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~-GmG~~tg--------n------~~lE~vv~~L~~~g~~t 923 (1427)
-..+..|++.+++... +.||-+- | -++++|+..|...|+.+
T Consensus 325 --~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p 380 (469)
T PRK09613 325 --REVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIP 380 (469)
T ss_pred --HHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeE
Confidence 3556679998864333 4444331 1 16677777777766654
No 328
>PLN00016 RNA-binding protein; Provisional
Probab=91.89 E-value=0.58 Score=56.95 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCCCCEEEEE----c-CCHHHHHHHHHHHHcCCEEEEEecCCCccCcc-----ccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 54 PKTMEKILIA----N-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAH-----RTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 54 ~~~~kkVLIa----g-rGeia~riiraa~elGi~~vav~s~~d~~s~~-----~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..+++||||+ | .|.++..+++.+.+.|++++++.......... ..+++.. ..+... -..|...+.
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~---~~~v~~--v~~D~~d~~ 123 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS---SAGVKT--VWGDPADVK 123 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh---hcCceE--EEecHHHHH
Confidence 3567899999 7 69999999999999999999887554321000 0000000 000000 012344444
Q ss_pred HHHHhcCCCEEEeCCCcccc-cHHHHHHHHHCCC-ceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc-cccCCCHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSE-REDFAKAVIGAGL-EFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT-TEPVTDVDKV 200 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE-~~~~a~~~e~~Gi-~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~-~~~v~s~eea 200 (1427)
++....++|.|+-..+...+ ...+.++|.+.|+ .|+-.|...+ .++. .+.|..... ..+..+..++
T Consensus 124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~v--yg~~---------~~~p~~E~~~~~p~~sK~~~ 192 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGV--YKKS---------DEPPHVEGDAVKPKAGHLEV 192 (378)
T ss_pred hhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhh--cCCC---------CCCCCCCCCcCCCcchHHHH
Confidence 44445679988865442211 1256778888887 3554443322 2220 011111100 0011133455
Q ss_pred HHHHHhcCCc-EEEeecCCC
Q psy15244 201 KEFCDEVEFP-VILKAAFGG 219 (1427)
Q Consensus 201 ~~~a~~iGyP-vVVKP~~Gg 219 (1427)
+.++++.++| +++.|..-.
T Consensus 193 E~~l~~~~l~~~ilRp~~vy 212 (378)
T PLN00016 193 EAYLQKLGVNWTSFRPQYIY 212 (378)
T ss_pred HHHHHHcCCCeEEEeceeEE
Confidence 5566677888 577886433
No 329
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=91.78 E-value=5.9 Score=44.30 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.+.. -+..+|++-+- ++...| +-++.+|+.. ++.+-+-+- .. .|-...+
T Consensus 14 ~~~~~~~~~~~~~~---~~~~vk~g~~l-------~~~~G~-~~v~~ir~~~-~i~~D~k~~--------di-~~~~~~~ 72 (215)
T PRK13813 14 DRERALKIAEELDD---YVDAIKVGWPL-------VLASGL-GIIEELKRYA-PVIADLKVA--------DI-PNTNRLI 72 (215)
T ss_pred CHHHHHHHHHhccc---cCCEEEEcHHH-------HHhhCH-HHHHHHHhcC-CEEEEeecc--------cc-HHHHHHH
Confidence 35566677766654 45678887321 223333 5677777653 222111110 00 1224456
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.+.+.|.|.+-+..... .+.+..+++.+++.|. .+-..+..+ .+.....-.+++..++....+.|++...
T Consensus 73 ~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~g~---~~~v~~~~~----~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 73 CEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAESGG---KVFVVVEMS----HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred HHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhcCC---eEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 6888899999887776644 4678889999999998 555544332 2211122245677777778888987553
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH--HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA--TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A--n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
+. ....+.++.+++..+. ++. . =|-|.... |.-.++++|||++-..- .-...+...+.+..|
T Consensus 145 ~~--------~~~~~~i~~l~~~~~~-~~~--i-vdgGI~~~g~~~~~~~~aGad~iV~Gr----~I~~~~d~~~~~~~l 208 (215)
T PRK13813 145 AP--------ATRPERVRYIRSRLGD-ELK--I-ISPGIGAQGGKAADAIKAGADYVIVGR----SIYNAADPREAAKAI 208 (215)
T ss_pred EC--------CCcchhHHHHHHhcCC-CcE--E-EeCCcCCCCCCHHHHHHcCCCEEEECc----ccCCCCCHHHHHHHH
Confidence 21 1123445677766632 111 1 22344443 47789999999874431 223344555656555
Q ss_pred H
Q psy15244 917 E 917 (1427)
Q Consensus 917 ~ 917 (1427)
+
T Consensus 209 ~ 209 (215)
T PRK13813 209 N 209 (215)
T ss_pred H
Confidence 4
No 330
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=91.74 E-value=0.45 Score=48.65 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=39.4
Q ss_pred CCCceecCCCeEEEEEEecCCCE-Eec--C-CEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQ-VKK--N-DVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~-V~~--G-~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+.|.||..|+|..+.-..-.- ++. | +.|+.+... +....|.=-++++++||.|.+||+|+++.
T Consensus 34 ~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGid------Tv~l~g~gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 34 SDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGID------TVKLNGEGFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred cCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeee------eeecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 45789999999997764322111 111 2 222222211 11123444568899999999999999875
No 331
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.71 E-value=2.8 Score=50.21 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----CC-------
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----PN------- 813 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p~------- 813 (1427)
+.|.+|.++|.+.|-+=.|.- +++.-++.+++|+..|. .||+-|-..+..-. .+
T Consensus 89 e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv---~VEaELG~vgg~e~~~~g~~~~~~~~~~ 165 (347)
T PRK09196 89 ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGV---SVEGELGCLGSLETGMGGEEDGHGAEGK 165 (347)
T ss_pred HHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeccCccccccccccCcccccc
Confidence 458899999998876655533 34455788999999999 88887765431100 01
Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCEEEEcc--ccCcC----CHH---HHHHHHHHHHHHcCCceEEEeecCCc-----
Q psy15244 814 ----KKKYSLNYYEDLAKQLVESGAQVLCLKD--MAGLL----KPT---AAKLLIGSFREKYPNILIHVHTHDMA----- 875 (1427)
Q Consensus 814 ----~~~~~~~~~~~~a~~l~~~Gad~i~i~D--t~G~l----~P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~----- 875 (1427)
...++++...++++ +.|+|.|.++= .=|.- +|. -=.++++.+++.+|++||.+|.=...
T Consensus 166 ~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 166 LSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred cchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHH
Confidence 11345555555443 46899766542 33333 242 34557788998987899999876644
Q ss_pred --------------chHHHHHHHHHHhcCCEEEecc
Q psy15244 876 --------------GTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 876 --------------GlA~An~laAi~AGad~VD~av 897 (1427)
|........|++.|+.-|+...
T Consensus 243 ~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~T 278 (347)
T PRK09196 243 DIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDT 278 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeCh
Confidence 5577888899999998887653
No 332
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=2.3 Score=51.21 Aligned_cols=132 Identities=23% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHHhcCCCEEEEecc-CC--------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDP-LN--------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~-~n--------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.+.++|+|.|-+-.. .+ ..+.++++++.|+++|+ .+.++++.. .. ....+.+.+..+.+
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk---k~~V~~N~~---~~----~~~~~~~~~~l~~l 88 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK---KVYVAVNTL---LH----NDELETLERYLDRL 88 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC---eEEEEeccc---cc----cchhhHHHHHHHHH
Confidence 67788889888766644 11 34579999999999999 666665543 11 23445578999999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE-EeccccCCCCCCCCc
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV-DVAADSMSGICSQPA 908 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V-D~av~GmG~~tgn~~ 908 (1427)
.++|+|.|.+.|.. +|..+++..|++|||+-+.-+.-.+- .+--.-+.|+..+ ..- --+
T Consensus 89 ~e~GvDaviv~Dpg----------~i~l~~e~~p~l~ih~S~q~~v~N~~-~~~f~~~~G~~rvVl~r---------Els 148 (347)
T COG0826 89 VELGVDAVIVADPG----------LIMLARERGPDLPIHVSTQANVTNAE-TAKFWKELGAKRVVLPR---------ELS 148 (347)
T ss_pred HHcCCCEEEEcCHH----------HHHHHHHhCCCCcEEEeeeEecCCHH-HHHHHHHcCCEEEEeCc---------cCC
Confidence 99999999999942 56778889999999997765544432 2222335676654 222 245
Q ss_pred HHHHHHHHHhCC
Q psy15244 909 MGTIVSCLENTD 920 (1427)
Q Consensus 909 lE~vv~~L~~~g 920 (1427)
++++....+...
T Consensus 149 ~~ei~~i~~~~~ 160 (347)
T COG0826 149 LEEIKEIKEQTP 160 (347)
T ss_pred HHHHHHHHHhCC
Confidence 677777777653
No 333
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=91.59 E-value=23 Score=40.07 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=116.5
Q ss_pred HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 720 WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 720 ~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
-+.++.|++..+ .++-.-+|..+-=|.....+....+.++.+.+.|++.+-|=... +.+...++.+++.+. .+
T Consensus 44 ~~~~~~lr~~~~-~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~---~~~~~~~~~~~~~~~---ki 116 (225)
T cd00502 44 AEQLSLLRELTP-LPIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS---ALLEELINSRKKGNT---KI 116 (225)
T ss_pred HHHHHHHHHhCC-CCEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc---hHHHHHHHHHHhCCC---EE
Confidence 445667776654 67777788765555555566667778899999999888775544 566777777665555 33
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc--CCceEEEeecCCcch
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY--PNILIHVHTHDMAGT 877 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~--p~ipi~~H~Hnd~Gl 877 (1427)
- ++|- ||.. + -+.+.+.++.+++.+.|+|++.|+=|+- .+.++.++....++.- ++.|+-.-+ .--+
T Consensus 117 I--~S~H-~f~~---t-p~~~~l~~~~~~~~~~gadivKla~~~~--~~~D~~~ll~~~~~~~~~~~~p~i~~~--MG~~ 185 (225)
T cd00502 117 I--GSYH-DFSG---T-PSDEELVSRLEKMAALGADIVKIAVMAN--SIEDNLRLLKFTRQVKNLYDIPLIAIN--MGEL 185 (225)
T ss_pred E--EEec-cCCC---C-cCHHHHHHHHHHHHHhCCCEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCEEEEE--cCCC
Confidence 2 3343 2211 1 1667888999999999999999986654 3667777776655442 245654433 2222
Q ss_pred HHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 878 GVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 878 A~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|..+=+.+-.-|.-+.-+++.. ..-+||++++++...++
T Consensus 186 G~~SRil~~~~gs~~t~~~~~~-~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 186 GKLSRILSPVFGSPLTYASLPE-PSAPGQLSVEELKQALS 224 (225)
T ss_pred CchhhccccccCCcccccCCCC-CCCCCCcCHHHHHHHHh
Confidence 3344445555777776666654 56899999988876653
No 334
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=91.46 E-value=4.3 Score=48.10 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC----CCCCCCHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP----NKKKYSLNYYEDLAK 827 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p----~~~~~~~~~~~~~a~ 827 (1427)
.+++.+|.++|.+.+-+=.|--+ ++.-++.++.|+..|. .||+-|-..+.--+. ...-++++...++++
T Consensus 98 ~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~Gv---sVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~ 174 (321)
T PRK07084 98 FELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDV---TVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK 174 (321)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeecCccCCccCcccccCCHHHHHHHHH
Confidence 34689999999988765444433 3455678889999998 888777665311111 111346666666555
Q ss_pred HHHHCCCCEEEEc--cccCcC-------CHHHHHHHHHHHHHHcCCceEEEeecCC-------------------cchHH
Q psy15244 828 QLVESGAQVLCLK--DMAGLL-------KPTAAKLLIGSFREKYPNILIHVHTHDM-------------------AGTGV 879 (1427)
Q Consensus 828 ~l~~~Gad~i~i~--Dt~G~l-------~P~~~~~lv~~lr~~~p~ipi~~H~Hnd-------------------~GlA~ 879 (1427)
+ .|+|.+.++ -.=|.- .|.-=.++++.+++.++++||.+|.=.. .|..-
T Consensus 175 ~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~ 251 (321)
T PRK07084 175 K---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPE 251 (321)
T ss_pred H---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCH
Confidence 3 699977664 233333 3545567888999998779999987662 37888
Q ss_pred HHHHHHHHhcCCEEEec
Q psy15244 880 ATTLACVKAGADIVDVA 896 (1427)
Q Consensus 880 An~laAi~AGad~VD~a 896 (1427)
.....|++.|+.-|+..
T Consensus 252 e~~~kai~~GI~KINi~ 268 (321)
T PRK07084 252 EQLRKAAKSAVCKINID 268 (321)
T ss_pred HHHHHHHHcCCceeccc
Confidence 89999999999988664
No 335
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=91.43 E-value=0.45 Score=51.21 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred eEEEEEECCEEeEe----chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCE-E--ecC-CEEEEEEcCCceee
Q psy15244 1325 RTVFFLYNGQLRSL----DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQ-V--KKN-DVLIVMSVMKTETL 1396 (1427)
Q Consensus 1325 r~v~~elnG~~~~v----d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~-V--~~G-~~l~~ieamKme~~ 1396 (1427)
..++--++|+...+ |.--+......-.|-....+.|.||..|+|..+.-..=.- + ..| +.|+.|--.
T Consensus 21 ~~i~aP~~G~vi~L~~V~D~vFs~k~mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiD----- 95 (169)
T PRK09439 21 IEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGID----- 95 (169)
T ss_pred eEEEecCCeEEEEhHHCCChHhcccCccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeec-----
Confidence 35666788888766 2222221111111222245889999999998775321111 1 113 223222211
Q ss_pred eecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1397 i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+....|.==+.+|++||.|++||+|++++
T Consensus 96 -TV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 96 -TVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred -ccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 11122444567899999999999999875
No 336
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=91.24 E-value=8 Score=45.28 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=105.8
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEc-----c-ccCcCCHHHHHH---HHHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLK-----D-MAGLLKPTAAKL---LIGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~-----D-t~G~l~P~~~~~---lv~~lr~~~p~ipi 867 (1427)
.+.+.+..|-| +--|.++| +.+..++-++++.+.|||+|-|. - ...+-..++..+ .|++|++.+ ++||
T Consensus 16 ~imGIlNvTpD-SFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I 93 (282)
T PRK11613 16 HVMGILNVTPD-SFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI 93 (282)
T ss_pred eEEEEEcCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE
Confidence 45556666654 11245564 89999999999999999999886 1 112222245444 567777776 7899
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH-------hCCCCCCC-------Ch-hh-HH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE-------NTDKRCGI-------DL-HD-VC 931 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~-------~~g~~tgi-------dl-~~-L~ 931 (1427)
.+-+-+ ...+.+|+++||++|+-- +|+. .+.+-++++-.. ..|..... |+ +. ..
T Consensus 94 SIDT~~-----~~va~~AL~~GadiINDI-~g~~----d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 94 SVDTSK-----PEVIRESAKAGAHIINDI-RSLS----EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_pred EEECCC-----HHHHHHHHHcCCCEEEEC-CCCC----CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHH
Confidence 886655 455678999999998654 3331 344333332110 01111000 10 01 12
Q ss_pred HHHHHHHHHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC
Q psy15244 932 DYSSYWRKVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG 997 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG 997 (1427)
.+.+.++.....-++.++ |-+| |.... .++-.+.+.-..+..|.+|-+.|.++.-+++.+-|
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiG---F~k~~-~~n~~ll~~l~~l~~lg~Pilvg~SRKsfig~~~~ 229 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFG---FGKNL-SHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLN 229 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCC---cCCCH-HHHHHHHHHHHHHHhCCCCEEEEecccHHHHhhcC
Confidence 334555556666666665 4444 54433 44555555545566677677788887776665543
No 337
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=91.23 E-value=0.52 Score=53.31 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccC-ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFS-AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s-~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
+.+|||+|+..-++.+++.+...+.. +.+.|-.+... +....+. ..+..+++.+.+.++.+++++|.++
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~-~~~ss~t~~g~~l~~~~~~---------~~~~G~l~~e~l~~~l~e~~i~llI 71 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVD-IILSSLTGYGAKLAEQIGP---------VRVGGFLGAEGLAAFLREEGIDLLI 71 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCcc-EEEEEcccccccchhccCC---------eeecCcCCHHHHHHHHHHcCCCEEE
Confidence 56899999998999999999999933 33444333221 2111221 1233478999999999999988776
Q ss_pred eCC----CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCC--CCCCccccCCCHHHHHHHHHhcC
Q psy15244 136 PGY----GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVP--IIPGTTEPVTDVDKVKEFCDEVE 208 (1427)
Q Consensus 136 pg~----gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVp--vp~~~~~~v~s~eea~~~a~~iG 208 (1427)
-.. --.|+| .+++|++.||+++- +++=+.. -..+. .+.|.+|+.+.+.+.+
T Consensus 72 DATHPyAa~iS~N--a~~aake~gipy~r------------------~eRP~~~~~gd~~~--~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 72 DATHPYAARISQN--AARAAKETGIPYLR------------------LERPPWAPNGDNWI--EVADIEEAAEAAKQLG 128 (257)
T ss_pred ECCChHHHHHHHH--HHHHHHHhCCcEEE------------------EECCccccCCCceE--EecCHHHHHHHHhccC
Confidence 431 122333 47788888888762 1111111 12333 5788888888877665
No 338
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=91.19 E-value=9.4 Score=44.25 Aligned_cols=124 Identities=16% Similarity=0.256 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh--cCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA--GADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A--Gad~V 893 (1427)
-+.++.++.+++..+.|||.|-|.= +.+--.+.++..+|+.+++.+ ++||.+-+-+ ...+.+|+++ |+++|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsIDT~~-----~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCIDSPN-----PAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEEeCCC-----HHHHHHHHHhCCCCCEE
Confidence 5778999999999999999998862 222222456777888888877 8999886655 4556678887 99998
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCC--------CCC--Chh-hHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKR--------CGI--DLH-DVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~--------tgi--dl~-~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
+..- |.. -..+.++..+++.|.. .|+ +.+ .+..+.+.++.....-+++.+-++
T Consensus 96 NsIs-~~~-----~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Iil 159 (261)
T PRK07535 96 NSVS-AEG-----EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYI 159 (261)
T ss_pred EeCC-CCC-----ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEE
Confidence 7543 221 1234555555554322 111 112 344555567767777777666333
No 339
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.14 E-value=6.8 Score=43.97 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.|.+ .|++.||++ +-.++..+-++.+++..|+..+.. |. | - ..+
T Consensus 24 ~~~~~a~~i~~al~~--~Gi~~iEit----------l~~~~~~~~I~~l~~~~p~~~IGA---GT--V------l--~~~ 78 (212)
T PRK05718 24 NKLEDAVPLAKALVA--GGLPVLEVT----------LRTPAALEAIRLIAKEVPEALIGA---GT--V------L--NPE 78 (212)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEe----------cCCccHHHHHHHHHHHCCCCEEEE---ee--c------c--CHH
Confidence 456889999999998 799999996 224566777899999998754332 11 1 0 124
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.+.+-.- .+++ ..++.+++.+. .. + | +..|+.. +.++.++|++.+
T Consensus 79 ~a~~a~~aGA~FivsP-~~~~-----~vi~~a~~~~i---~~-----i------P--G~~TptE----i~~a~~~Ga~~v 132 (212)
T PRK05718 79 QLAQAIEAGAQFIVSP-GLTP-----PLLKAAQEGPI---PL-----I------P--GVSTPSE----LMLGMELGLRTF 132 (212)
T ss_pred HHHHHHHcCCCEEECC-CCCH-----HHHHHHHHcCC---CE-----e------C--CCCCHHH----HHHHHHCCCCEE
Confidence 5889999999976433 2222 44566677777 11 1 1 1344443 556888999999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhc
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.+-|. +.+- -...++.|+.-+|++++- -+-|....|.-.=+.+|
T Consensus 133 KlFPa-~~~g---g~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 133 KFFPA-EASG---GVKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP 176 (212)
T ss_pred EEccc-hhcc---CHHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence 99662 2221 134678888888887765 35677788888888889
No 340
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.98 E-value=12 Score=43.26 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCceeeeecccccccccCCCcchH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..+..+..|..+.+ .|.+.|+++++.+ .++.|+|+..+-+.+ .+++++.= .+..
T Consensus 23 d~~~i~~~A~~~~~--~GAdiIDVg~~~~--------~~eE~~r~~~~v~~l~~~~~~plsID----------T~~~--- 79 (261)
T PRK07535 23 DAAFIQKLALKQAE--AGADYLDVNAGTA--------VEEEPETMEWLVETVQEVVDVPLCID----------SPNP--- 79 (261)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCC--------chhHHHHHHHHHHHHHHhCCCCEEEe----------CCCH---
Confidence 44567777777766 7999999998743 356677765444333 14454321 1222
Q ss_pred HHHHHHHHhc--CCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 756 GAFCRLASQA--GIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 756 ~~~v~~a~~~--Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
+.+++|.+. |.+++.=....++ .....++.+++.|. -+. .++. .+-+.|....-..+++.++++.+.++|
T Consensus 80 -~v~eaaL~~~~G~~iINsIs~~~~--~~~~~~~l~~~~g~---~vv-~m~~-~~~g~P~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 80 -AAIEAGLKVAKGPPLINSVSAEGE--KLEVVLPLVKKYNA---PVV-ALTM-DDTGIPKDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred -HHHHHHHHhCCCCCEEEeCCCCCc--cCHHHHHHHHHhCC---CEE-EEec-CCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 346677777 9887654444331 13345566777776 221 1222 111233211122577888888899999
Q ss_pred CC--EEEEccc-cC-c-CCHHH---HHHHHHHHHHHcCCceEEEeecC-CcchH------HHHHHHHHHhcCCE
Q psy15244 834 AQ--VLCLKDM-AG-L-LKPTA---AKLLIGSFREKYPNILIHVHTHD-MAGTG------VATTLACVKAGADI 892 (1427)
Q Consensus 834 ad--~i~i~Dt-~G-~-l~P~~---~~~lv~~lr~~~p~ipi~~H~Hn-d~GlA------~An~laAi~AGad~ 892 (1427)
+. .|.| |. .| . ..+.+ .-+.++.+++.+|++|+-+=.+| .+|++ .+=...|+++|.|.
T Consensus 152 I~~~~Iil-DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~ 224 (261)
T PRK07535 152 IPPEDIYI-DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDS 224 (261)
T ss_pred CCHhHEEE-eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCE
Confidence 94 5544 43 22 1 12233 45566777778888887665555 34442 22233678888774
No 341
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=90.96 E-value=0.9 Score=47.95 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=34.0
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCC-------ceeeeecCCCeEE-EEEEecCCCeeCCCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMK-------TETLIHASADGVV-KEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------me~~i~Ap~~G~V-~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.|.-.+.+|++||+|++||+|+..--.. +.++|.-.-...+ .-+....+-.+.+|+.++.+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 3444467889999999999988764321 3333322222222 22233344477777777654
No 342
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.94 E-value=0.23 Score=61.49 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
..|..-+..|++||+|++||+|+.-... +...+.||++|+|++|.-
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 3477778999999999999999977654 688999999999999953
No 343
>PRK06801 hypothetical protein; Provisional
Probab=90.89 E-value=2.8 Score=49.08 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC------CCCCC-CHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP------NKKKY-SLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p------~~~~~-~~~~~~~~ 825 (1427)
+.+++|.+.|++.|-+=.|-.+. +.-++.++.++..|. .+++.+-.-+.-.++ +.+.+ +++...++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv---~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f 164 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV---SVEAELGAVGGDEGGALYGEADSAKFTDPQLARDF 164 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---eEEeecCcccCCCCCcccCCcccccCCCHHHHHHH
Confidence 56899999999998875444442 344566778888888 676665544310011 11123 34555544
Q ss_pred HHHHHHCCCCEEEEccccCcC------CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLKDMAGLL------KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~l------~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.|.+ ..|.. .|.--.++++.+++.. ++|+.+|. .+|....+...++++|++-|+...
T Consensus 165 ~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHG--GSgi~~e~~~~~i~~Gi~KINv~T 234 (286)
T PRK06801 165 VD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHG--GSGISDADFRRAIELGIHKINFYT 234 (286)
T ss_pred HH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEC--CCCCCHHHHHHHHHcCCcEEEehh
Confidence 43 469999988 22211 2333456778888887 78987765 557888999999999999998754
No 344
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=90.87 E-value=16 Score=46.16 Aligned_cols=174 Identities=15% Similarity=0.083 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccCh---HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECP---WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p---~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
++.++-|..+.+ .|.+.|.+|++++- +.+ ...++.+++.. +.+++. |..--+
T Consensus 165 ~~i~~~A~~~~~--~GADIIDIG~~st~--------p~~~~v~~~V~~l~~~~-~~pISI--------------DT~~~~ 219 (499)
T TIGR00284 165 DGIEGLAARMER--DGADMVALGTGSFD--------DDPDVVKEKVKTALDAL-DSPVIA--------------DTPTLD 219 (499)
T ss_pred HHHHHHHHHHHH--CCCCEEEECCCcCC--------CcHHHHHHHHHHHHhhC-CCcEEE--------------eCCCHH
Confidence 667777777766 79999999988751 121 12234444332 233332 222234
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.+++|.++|.+.|. ++|. .++....+.+++.|. .+. .+. + . . ..+.+++.+.++.+.++|.+.|
T Consensus 220 v~eaAL~aGAdiIN---sVs~-~~~d~~~~l~a~~g~---~vV-lm~-~----~-~--~~~~~~l~~~ie~a~~~Gi~~I 283 (499)
T TIGR00284 220 ELYEALKAGASGVI---MPDV-ENAVELASEKKLPED---AFV-VVP-G----N-Q--PTNYEELAKAVKKLRTSGYSKV 283 (499)
T ss_pred HHHHHHHcCCCEEE---ECCc-cchhHHHHHHHHcCC---eEE-EEc-C----C-C--CchHHHHHHHHHHHHHCCCCcE
Confidence 57888899999877 3333 245556666777776 221 111 1 1 1 2334899999999999999753
Q ss_pred EEccccCcCCHHHHHHHHHHHH---HHcCCceEEEeec--------CCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFR---EKYPNILIHVHTH--------DMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr---~~~p~ipi~~H~H--------nd~GlA~An~laAi~AGad~VD~av 897 (1427)
|.|-.=...+....+-+..++ +.+ ++|+-+=.= |..|...+.+..|++.||++|=+.=
T Consensus 284 -IlDPglg~~~~~l~~sL~~l~~~r~~~-~~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 284 -AADPSLSPPLLGLLESIIRFRRASRLL-NVPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred -EEeCCCCcchHHHHHHHHHHHHHHHhc-CCcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence 446421122344444444444 466 366522221 3445556666789999999987664
No 345
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.84 E-value=4.7 Score=47.03 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
++|.+|+++|.+.+-+=.|.-++ +.-++.++.++..|. .+|+-|-..+ +.++. .-++++...+++
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv---~VEaElG~i~--g~e~~~~~~~~~~T~pe~a~~Fv 157 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGV---SVEAELGRIG--GEEDGVVGDEGLLTDPEEAEEFV 157 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeec--CccCCcccccccCCCHHHHHHHH
Confidence 56888999999887554444433 345678889999998 8888776664 12221 134566655555
Q ss_pred HHHHHCCCCEEEEcc--ccCcC---CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLKD--MAGLL---KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~D--t~G~l---~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .|+|.|.++= +=|.- .|.-=.++++.+++.+ ++|+.+|. .+|+.--....|++.|+.-|+...
T Consensus 158 ~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~-~vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 158 EE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV-NVPLVLHG--GSGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred HH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeCh
Confidence 44 5899776641 22222 5666677889999998 88987765 568888899999999999997754
No 346
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.74 E-value=13 Score=42.96 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=109.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CCceee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NIPFQM 737 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~~~qm 737 (1427)
+|--+|=||.. .++.++.++.|..+.+ .|.+.|++++-+|-...-..-.+..|+|+..+-+.+. ++++..
T Consensus 8 ~tpdSF~dg~~-----~~~~~~~~~~a~~~~~--~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi 80 (257)
T TIGR01496 8 VTPDSFSDGGR-----FLSVDKAVAHAERMLE--EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV 80 (257)
T ss_pred CCCCCCCCCCC-----CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 44445666643 3677889999988877 7999999986444111111122335667764444332 344332
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC--
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK-- 815 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~-- 815 (1427)
|..--+.+++|.+.|++++.=....+ ....++.+++.|. .+.. +... +.|...
T Consensus 81 --------------DT~~~~vi~~al~~G~~iINsis~~~----~~~~~~l~~~~~~---~vV~--m~~~--g~p~~~~~ 135 (257)
T TIGR01496 81 --------------DTYRAEVARAALEAGADIINDVSGGQ----DPAMLEVAAEYGV---PLVL--MHMR--GTPRTMQE 135 (257)
T ss_pred --------------eCCCHHHHHHHHHcCCCEEEECCCCC----CchhHHHHHHcCC---cEEE--EeCC--CCCccccc
Confidence 11123347788889999876544443 3445566777776 2222 2221 233211
Q ss_pred --CC------CHHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CHHHHHHHHHHHHHHc-CCceEEEe------------
Q psy15244 816 --KY------SLNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KPTAAKLLIGSFREKY-PNILIHVH------------ 870 (1427)
Q Consensus 816 --~~------~~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H------------ 870 (1427)
.| -.+++.+.++.+.++|+. .|.| |- .|.. ++.+..++++.++.-- +++|+-+=
T Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~ 214 (257)
T TIGR01496 136 NPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLG 214 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcC
Confidence 01 236677778888999984 4443 55 3332 3455556665554321 25664322
Q ss_pred --ecCCcchHHHHHHHHHHhcCCEE
Q psy15244 871 --THDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 871 --~Hnd~GlA~An~laAi~AGad~V 893 (1427)
..+..+..++.+..|++.||++|
T Consensus 215 ~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 215 TPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred CChhhhhHHHHHHHHHHHHcCCCEE
Confidence 12333444555566778888876
No 347
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=90.71 E-value=0.6 Score=57.73 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=48.9
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|....|+.|+.-..=+....+++. -+..|.++.+|+|.++++++|+.|++||+|++|+
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld 119 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEID 119 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEEC
Confidence 3566677777755555667788874 5788999999999999999999999999999985
No 348
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=90.57 E-value=8.3 Score=43.04 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
++..++++.+.+ .|.+.|++||.-.. .++.. +-++.+|+. .+.|+-+. -|. . ..
T Consensus 11 e~~~~ia~~v~~--~gtDaI~VGGS~gv-------t~~~~~~~v~~ik~~-~~lPvilf-p~~-~-------~~------ 65 (205)
T TIGR01769 11 DEIEKIAKNAKD--AGTDAIMVGGSLGI-------VESNLDQTVKKIKKI-TNLPVILF-PGN-V-------NG------ 65 (205)
T ss_pred HHHHHHHHHHHh--cCCCEEEEcCcCCC-------CHHHHHHHHHHHHhh-cCCCEEEE-CCC-c-------cc------
Confidence 677889999988 89999999875211 22222 234566663 24454432 221 1 11
Q ss_pred HHHHhcCCCEEEEeccCC-----hH-HHHHHHHHHHHHhcCCCcEEEEEEEeecc-----CCCCC-CCCCCHHHHHHHHH
Q psy15244 760 RLASQAGIDIFRVFDPLN-----SV-PNLVKGMDAVQQVTGGSTIVEATICYAGD-----LTNPN-KKKYSLNYYEDLAK 827 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~n-----d~-~~~~~~i~~a~~~G~~~~~v~~~i~~t~d-----~~~p~-~~~~~~~~~~~~a~ 827 (1427)
+..+.|.+-+..-+| |+ ..-..++-.+++.|. ...-++++....+ ++.-. -...+++....++.
T Consensus 66 ---i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~-e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~ 141 (205)
T TIGR01769 66 ---LSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNL-EVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCL 141 (205)
T ss_pred ---cCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCC-cccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHH
Confidence 124566665555455 22 122233334477665 1223344333211 01100 11368888999999
Q ss_pred HHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHH---HHHHHHHHhcCCEE
Q psy15244 828 QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV---ATTLACVKAGADIV 893 (1427)
Q Consensus 828 ~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~---An~laAi~AGad~V 893 (1427)
.+..+|++.|+|.|..|...|-. .++++.+|+.. ++|+.+ |-|+ ..+-.++++|||.|
T Consensus 142 aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~-~~Pv~v------GGGIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 142 AAKYFGMKWVYLEAGSGASYPVN-PETISLVKKAS-GIPLIV------GGGIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred HHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhh-CCCEEE------eCCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999988864433 67888898887 777765 3333 34445567899876
No 349
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.50 E-value=32 Score=41.98 Aligned_cols=212 Identities=10% Similarity=0.064 Sum_probs=128.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChH----HHHHHHHHhCCCCceeeeecccccccccCCC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW----ERLAELRELIPNIPFQMILRGNSLVGYSNYS 751 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~----erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~ 751 (1427)
..++.+++++.+..+.+ .|+..+-+.||-+. ...++ +.++.+++..|.+.+.. .|
T Consensus 102 ~~ls~eEI~~~a~~~~~--~Gv~~i~lvgGe~p-------~~~~~e~l~~~i~~Ik~~~p~i~i~~------------g~ 160 (371)
T PRK09240 102 KTLDEEEIEREMAAIKK--LGFEHILLLTGEHE-------AKVGVDYIRRALPIAREYFSSVSIEV------------QP 160 (371)
T ss_pred ccCCHHHHHHHHHHHHh--CCCCEEEEeeCCCC-------CCCCHHHHHHHHHHHHHhCCCceecc------------CC
Confidence 45899999999999887 69998877555432 11233 33455666555543221 12
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
- -.+.++..+++|++.+.+..-.. +++....+++.++++|+. .+...+.+. -+
T Consensus 161 l--t~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~--~v~~g~i~G----lg---- 228 (371)
T PRK09240 161 L--SEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR--KIGLGALLG----LS---- 228 (371)
T ss_pred C--CHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC--eeceEEEec----CC----
Confidence 2 23447888899999988776553 334556788999999981 243333333 12
Q ss_pred CCHHHHHHHHHHHHHCCCC------EEE---EccccC------cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH-
Q psy15244 817 YSLNYYEDLAKQLVESGAQ------VLC---LKDMAG------LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA- 880 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad------~i~---i~Dt~G------~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A- 880 (1427)
-+.+..++++..+..++.+ .|. +....| .+.|.++.++|..+|-.+|+..|-+-+=-...+.-.
T Consensus 229 e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~ 308 (371)
T PRK09240 229 DWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNL 308 (371)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHH
Confidence 1455566666655555432 443 444444 267889999999999889988887766554333211
Q ss_pred --HHHHHHHhcCCEEEeccccCCCC-C--------CCCcHHHHHHHHHhCCCCC
Q psy15244 881 --TTLACVKAGADIVDVAADSMSGI-C--------SQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 881 --n~laAi~AGad~VD~av~GmG~~-t--------gn~~lE~vv~~L~~~g~~t 923 (1427)
.-..++.|| -.+.++|+... . ..-+.++++.+|+..|+++
T Consensus 309 ~~~~~~~~~ag---~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~ 359 (371)
T PRK09240 309 IPLGITKMSAG---SSTQPGGYADDHKELEQFEISDDRSVEEVAAALRAKGLQP 359 (371)
T ss_pred HhhcceeeccC---ccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence 001233343 12344455432 1 1347788999999988875
No 350
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=90.42 E-value=1.1 Score=41.03 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
...|.||..|+|.+++++.|+.|..|+.|+.+
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45799999999999999999999999999864
No 351
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=90.39 E-value=4.5 Score=47.38 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH-HH---HHHHHHHHHhcCCCcEEEEEEEeeccCCCCC------CCCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP-NL---VKGMDAVQQVTGGSTIVEATICYAGDLTNPN------KKKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~-~~---~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~------~~~~~~~~~~~~a 826 (1427)
+.+++|.+.|++.+.+=.+-.+.+ |+ ++.++.++..|. .+++.+-..+ +.++ .+-++++...+.+
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv---~Ve~ElG~~g--g~ed~~~g~~~~~t~~eea~~f~ 162 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV---SVEAELGTLG--GIEDGVDEKEAELADPDEAEQFV 162 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEeeCCCc--CccccccccccccCCHHHHHHHH
Confidence 468899999999987766665554 44 566677788887 7776654322 1112 3345777665544
Q ss_pred HHHHHCCCCEEEEc-cc-cCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLK-DM-AGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~-Dt-~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+ +.|+|.|.+. -| -|.. .|.--.++++.+++.+ ++||-+| ..+|+...|...++++|++-|+...
T Consensus 163 ~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~-~iPlv~h--GgSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 163 K---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT-NIPLVLH--GASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred H---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh-CCCEEEE--CCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3 3599988853 11 1111 2333356778888888 7887555 5678889999999999999998764
No 352
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=90.35 E-value=4.5 Score=47.63 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH----HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC----CCC-CCHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP----NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN----KKK-YSLNYYEDLAK 827 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~----~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~----~~~-~~~~~~~~~a~ 827 (1427)
+.+++|.+.|++.+-+=.|--+.+ ..++.++.++..|. .+++.+-..+ +.++ .+. ++++...+++
T Consensus 90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv---~vE~ElG~i~--g~ed~~~g~s~~t~peea~~f~- 163 (293)
T PRK07315 90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGI---SVEAEVGTIG--GEEDGIIGKGELAPIEDAKAMV- 163 (293)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEecCccc--CcCccccCccCCCCHHHHHHHH-
Confidence 368899999999887765555443 44566777888887 6666554331 2132 123 6777665544
Q ss_pred HHHHCCCCEEEEc--cccCcC---CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 828 QLVESGAQVLCLK--DMAGLL---KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 828 ~l~~~Gad~i~i~--Dt~G~l---~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.|+|.|.+. =.=|.- +|.--.++++.+++.++++||-+|.- +|....|...++++|++-|+....
T Consensus 164 ---~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGG--SGi~~e~~~~~i~~Gi~KiNv~T~ 234 (293)
T PRK07315 164 ---ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGG--SGIPDDQIQEAIKLGVAKVNVNTE 234 (293)
T ss_pred ---HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECC--CCCCHHHHHHHHHcCCCEEEEccH
Confidence 5799998887 332322 24344567888888885699877764 588999999999999999877643
No 353
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=90.31 E-value=1.9 Score=46.41 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=40.2
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCC-EEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQND-LVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~-~L~~i~ 1426 (1427)
-+.|.=.+++|++||+|++||+|+...- .| +.+.|.-.-...+..+....|+ +.+|+ ++..++
T Consensus 98 ~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~~-v~~g~~~~~~i~ 168 (169)
T PRK09439 98 ELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGS-VTAGETPVIRVK 168 (169)
T ss_pred ccCCCceEEEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccCc-eecCCeEEEEEe
Confidence 4778889999999999999999998753 22 3444433333333444444554 55565 455553
No 354
>PRK07094 biotin synthase; Provisional
Probab=90.27 E-value=11 Score=45.04 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
.+++.+++.++.+.+.|++.|.|.+- ........+.++++.+++. +++.+++++ |.- -..+..-.+||++.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~----g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSL----GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEec----CCCCHHHHHHHHHcCCCEEE
Confidence 47999999999999999999999732 2345668899999999987 477666654 222 2333445579999998
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccccc-chhhhhHHHHHHHHHHhhh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC-GIDLHDVCDYSSYWRKVRE 973 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~-~~f~~~~~~~~~~~~~~~~ 973 (1427)
..+-+.. +++...+.. +.+.+...+..+.+.+. |+.+.. .-++|- +--.+....+...+.+...
T Consensus 145 ~glEs~~--------~~~~~~i~~-----~~s~~~~~~~i~~l~~~-Gi~v~~-~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 145 LRHETAD--------KELYAKLHP-----GMSFENRIACLKDLKEL-GYEVGS-GFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred eccccCC--------HHHHHHhCC-----CCCHHHHHHHHHHHHHc-CCeecc-eEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 7765542 223332221 23444455544444442 443211 224442 2111334444444444332
Q ss_pred hcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCC
Q psy15244 974 LYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF-GLDFEDVKRAYRTANFLLGDI 1031 (1427)
Q Consensus 974 ~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~-gl~~~ev~~~~~~v~~~lG~~ 1031 (1427)
.+-.|. .+..+||-. +. +. ....++..+.++..|..+.+.
T Consensus 210 ~~v~~~-----------~~~P~pgTp---l~----~~~~~~~~~~~~~~a~~R~~lp~~ 250 (323)
T PRK07094 210 DMIGIG-----------PFIPHPDTP---LK----DEKGGSLELTLKVLALLRLLLPDA 250 (323)
T ss_pred Ceeeee-----------ccccCCCCC---cc----cCCCCCHHHHHHHHHHHHHhCcCC
Confidence 221121 122345532 21 11 226788899999999999863
No 355
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.16 E-value=9.3 Score=44.99 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=98.7
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
-||.+-+. +...|++..+.|+.-++|=|... +.+.+..-|++++++.. .....|.--.|-.
T Consensus 86 tGyG~~~~--v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~---~~d~~I~ARTDa~- 159 (294)
T TIGR02319 86 AGYGNAMS--VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE---DEDFTIIARTDAR- 159 (294)
T ss_pred CCCCCcHH--HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc---CCCeEEEEEeccc-
Confidence 36765544 46679999999999999999763 34555555666666543 1122222222211
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhc
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.....+..++-++...++|||.|.+. |..+++++..+++. + +.|+ .+....... .-+.-...+.|
T Consensus 160 ---~~~g~deaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~----~-~~P~~~nv~~~~~~p--~~s~~eL~~lG 226 (294)
T TIGR02319 160 ---ESFGLDEAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDE----I-DAPLLANMVEGGKTP--WLTTKELESIG 226 (294)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHh----c-CCCeeEEEEecCCCC--CCCHHHHHHcC
Confidence 23578889999999999999999985 67788877666554 4 3454 444332222 12344556679
Q ss_pred CCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 890 ADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 890 ad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
++.|-.....+ ++...++...+..|+..|.
T Consensus 227 ~~~v~~~~~~~--~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 227 YNLAIYPLSGW--MAAASVLRKLFTELREAGT 256 (294)
T ss_pred CcEEEEcHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 99996555443 4455566777777765554
No 356
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=90.11 E-value=4.9 Score=46.97 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~~ 824 (1427)
+.|.+|.++|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. ..++++...+
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv---~VEaElG~vgg--~e~~~~~~~~~~~~T~peea~~ 160 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDC---SVEAELGRLGG--VEDDLSVDEEDALYTDPQEAKE 160 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEEecCC--ccCCCccccchhccCCHHHHHH
Confidence 56899999999887655444443 455788899999998 88888776642 2221 1345555555
Q ss_pred HHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .+.|+|.|.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|+.--....|+..|+.-|+...
T Consensus 161 Fv---~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~-~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 161 FV---EATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV-DVPLVLHG--ASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred HH---HHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh-CCCeEEec--CCCCCHHHHHHHHHcCCeEEEeCc
Confidence 54 367999777641 22221 3555677889999998 89987765 567788899999999999997653
No 357
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=90.10 E-value=2.4 Score=48.66 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=58.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEE-ecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGI-YSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav-~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+||||+|+..-++.+++.+.+.|+ +++- .++-.............+.++ .+.+.+.+.++++++++++|+-
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G-------~lg~~~~l~~~l~~~~i~~vID 72 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG-------RLGDEEGLAEFLRENGIDAVID 72 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC-------CCCCHHHHHHHHHhCCCcEEEE
Confidence 589999998889999999999998 3322 221111111011011123333 2338999999999999988764
Q ss_pred C-CCcccccH-HHHHHHHHCCCcee
Q psy15244 137 G-YGFLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 137 g-~gflsE~~-~~a~~~e~~Gi~fi 159 (1427)
. .-|..+-. ...++|.+.||+++
T Consensus 73 ATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 73 ATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCCchHHHHHHHHHHHHhhcCcceE
Confidence 4 22322222 34678888888876
No 358
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.10 E-value=13 Score=42.30 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=81.1
Q ss_pred hcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 764 QAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 764 ~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
+.++|.|-|-.++- |.+.+...++.+++.+. -+.+-|. +. .+.....++++.
T Consensus 90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~---PVsvKiR-------~~---~~~~~~~~~a~~ 156 (231)
T TIGR00736 90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNK---PIFVKIR-------GN---CIPLDELIDALN 156 (231)
T ss_pred hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCC---cEEEEeC-------CC---CCcchHHHHHHH
Confidence 45788888865542 56778888888886655 3333221 21 233457899999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCC
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG 901 (1427)
++++|++.|.+-.+.. ..|....+.|+.+++.++++||---.-- .....+++.+++|||.|-++-.-|.
T Consensus 157 l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~~ipIIgNGgI---~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFNDKIIIGNNSI---DDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcCCCcEEEECCc---CCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 9999999999954333 2355678899999999855886542211 2235566777789999987765553
No 359
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.04 E-value=13 Score=43.01 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
..+...+|+.+.+ .|...|-+-. ...|...+ ++.++.+++.+ +.|+-+ . .+.-+-.+ +
T Consensus 69 ~~~~~~~A~~~~~--~GA~aisvlt------e~~~f~g~-~~~l~~v~~~v-~iPvl~----k------dfi~~~~q--i 126 (260)
T PRK00278 69 DFDPVEIAKAYEA--GGAACLSVLT------DERFFQGS-LEYLRAARAAV-SLPVLR----K------DFIIDPYQ--I 126 (260)
T ss_pred CCCHHHHHHHHHh--CCCeEEEEec------ccccCCCC-HHHHHHHHHhc-CCCEEe----e------eecCCHHH--H
Confidence 3467889998888 6887775511 01111222 56778888764 455332 1 23223233 8
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i 839 (1427)
+.+.++|.|.+.+-.+.-+.+.++..++.++..|+ .+.+. .++.+.+ +.+.++|++.|++
T Consensus 127 ~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl---~~lve-------------vh~~~E~----~~A~~~gadiIgi 186 (260)
T PRK00278 127 YEARAAGADAILLIVAALDDEQLKELLDYAHSLGL---DVLVE-------------VHDEEEL----ERALKLGAPLIGI 186 (260)
T ss_pred HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCC---eEEEE-------------eCCHHHH----HHHHHcCCCEEEE
Confidence 99999999999998887556899999999999998 43322 2555544 4466789999998
Q ss_pred cc-ccCcCCHHHHHHHHHHHHHHcCC-ceEEEeecCCcch-HHHHHHHHHHhcCCEE
Q psy15244 840 KD-MAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGT-GVATTLACVKAGADIV 893 (1427)
Q Consensus 840 ~D-t~G~l~P~~~~~lv~~lr~~~p~-ipi~~H~Hnd~Gl-A~An~laAi~AGad~V 893 (1427)
-- ......|. .+++..+.+.+|+ .++-.=. |. ...+.-.+.++|+|.|
T Consensus 187 n~rdl~~~~~d--~~~~~~l~~~~p~~~~vIaeg----GI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 187 NNRNLKTFEVD--LETTERLAPLIPSDRLVVSES----GIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred CCCCcccccCC--HHHHHHHHHhCCCCCEEEEEe----CCCCHHHHHHHHHcCCCEE
Confidence 53 01122222 3344555555553 3432211 22 3567778889999987
No 360
>KOG3111|consensus
Probab=89.98 E-value=5.1 Score=43.50 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..+|+..+++|.+.|-+-.-. .+.....++.+|+.|. .+-.+| .| .++.+++..++.. +|
T Consensus 77 eq~V~~~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gm---k~G~al-------kP---gT~Ve~~~~~~~~-----~D 136 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFHYEA--TQKPAELVEKIREKGM---KVGLAL-------KP---GTPVEDLEPLAEH-----VD 136 (224)
T ss_pred HHHHHHHHhcCcceEEEEEee--ccCHHHHHHHHHHcCC---eeeEEe-------CC---CCcHHHHHHhhcc-----cc
Confidence 446778888999987664433 2236677889999999 665542 56 4677777666542 23
Q ss_pred EEEE---ccccC-cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 836 VLCL---KDMAG-LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 836 ~i~i---~Dt~G-~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
.+-+ .=-.| ----+++-.-|+.||+++|.+.|++ |-|++..|.-+|++|||+.+=+...= -+.++-.+
T Consensus 137 ~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsav----f~a~d~~~ 208 (224)
T KOG3111|consen 137 MVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAV----FGAADPSD 208 (224)
T ss_pred EEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEeccee----ecCCCHHH
Confidence 2211 11111 1112455666899999999888877 67999999999999999976333222 23345566
Q ss_pred HHHHHHh
Q psy15244 912 IVSCLEN 918 (1427)
Q Consensus 912 vv~~L~~ 918 (1427)
++..|+.
T Consensus 209 vi~~lr~ 215 (224)
T KOG3111|consen 209 VISLLRN 215 (224)
T ss_pred HHHHHHH
Confidence 7666654
No 361
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.98 E-value=12 Score=41.68 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=106.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.|.+ .|+..+|+.- -.++..+.++.+++..|+..+.. |. .. -.+
T Consensus 17 ~~~e~a~~~~~al~~--~Gi~~iEit~----------~t~~a~~~i~~l~~~~~~~~vGA---GT-Vl---------~~~ 71 (204)
T TIGR01182 17 DDVDDALPLAKALIE--GGLRVLEVTL----------RTPVALDAIRLLRKEVPDALIGA---GT-VL---------NPE 71 (204)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEeC----------CCccHHHHHHHHHHHCCCCEEEE---Ee-CC---------CHH
Confidence 367889999999998 8999999852 25677888999999888644332 11 11 123
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.++++|.+.+ ..+..+ ...++++++.|. ..- -| ..|+.. +..+.++|++.+
T Consensus 72 ~a~~a~~aGA~Fi--vsP~~~----~~v~~~~~~~~i---~~i-----PG--------~~TptE----i~~A~~~Ga~~v 125 (204)
T TIGR01182 72 QLRQAVDAGAQFI--VSPGLT----PELAKHAQDHGI---PII-----PG--------VATPSE----IMLALELGITAL 125 (204)
T ss_pred HHHHHHHcCCCEE--ECCCCC----HHHHHHHHHcCC---cEE-----CC--------CCCHHH----HHHHHHCCCCEE
Confidence 4888999999987 222222 256677888888 221 11 344443 335667999988
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
-+-= ++.+- -...+++|+.-+|++++- -+-|....|.-.=+.+|+..+
T Consensus 126 KlFP-A~~~G---G~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 126 KLFP-AEVSG---GVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred EECC-chhcC---CHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 7542 22221 135788899888887765 466888899999999998876
No 362
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.94 E-value=16 Score=40.54 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=88.0
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
+-++++++++.+.|++.+-+. .++++. +.+..+..+. .+...+ +.|... .+.+..+.-++++.++
T Consensus 17 ~~i~~~~~~a~~~~~~av~v~--p~~v~~---~~~~l~~~~~---~v~~~~------~fp~g~-~~~~~k~~eve~A~~~ 81 (203)
T cd00959 17 EDIRKLCDEAKEYGFAAVCVN--PCFVPL---AREALKGSGV---KVCTVI------GFPLGA-TTTEVKVAEAREAIAD 81 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEc--HHHHHH---HHHHcCCCCc---EEEEEE------ecCCCC-CcHHHHHHHHHHHHHc
Confidence 346778999999898887655 233332 2233332333 333332 234443 5666666668899999
Q ss_pred CCCEEEEccccCcCCH---HHHHHHHHHHHHHcCCceEEEeecCCcc----hHHHHHHHHHHhcCCEEEeccccCCCCCC
Q psy15244 833 GAQVLCLKDMAGLLKP---TAAKLLIGSFREKYPNILIHVHTHDMAG----TGVATTLACVKAGADIVDVAADSMSGICS 905 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P---~~~~~lv~~lr~~~p~ipi~~H~Hnd~G----lA~An~laAi~AGad~VD~av~GmG~~tg 905 (1427)
|||.|.+.=-.|.+.. ..+.+.+..+++...++|+-+ ...+.. .=...+..|+++|||+|-++ .|.+ ++
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~--~~ 157 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG--PG 157 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC--CC
Confidence 9998887666665432 557778888888765566422 122222 22234567899999999998 4443 34
Q ss_pred CCcHHHHHHHHH
Q psy15244 906 QPAMGTIVSCLE 917 (1427)
Q Consensus 906 n~~lE~vv~~L~ 917 (1427)
.+.++.+-.+.+
T Consensus 158 ~at~~~v~~~~~ 169 (203)
T cd00959 158 GATVEDVKLMKE 169 (203)
T ss_pred CCCHHHHHHHHH
Confidence 466665444433
No 363
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=89.93 E-value=0.22 Score=58.37 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.|.++..|.|.+++|++||.|++||+|+.|..
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 46778888888888888888888888888864
No 364
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=89.82 E-value=5.6 Score=47.68 Aligned_cols=134 Identities=20% Similarity=0.260 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCC-------C----C--
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLT-------N----P-- 812 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~-------~----p-- 812 (1427)
+.|.+|++.|.+.+-+=-|.- +++.-++.+++|+..|. .||+-|-..+... + .
T Consensus 89 e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~Gv---sVEaELG~igg~e~~~~g~ed~~~~~~~ 165 (347)
T PRK13399 89 ATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGV---SVEGELGCLGSLETGEAGEEDGVGAEGK 165 (347)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeccCcccccccccCCcccccc
Confidence 468999999998876655533 23455678899999999 8888775443100 1 0
Q ss_pred ---CCCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcC----CHH---HHHHHHHHHHHHcCCceEEEeecCCc-----
Q psy15244 813 ---NKKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLL----KPT---AAKLLIGSFREKYPNILIHVHTHDMA----- 875 (1427)
Q Consensus 813 ---~~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l----~P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~----- 875 (1427)
+..-++++...+++++ .|+|.|.++ =.=|.- .|. --.++++.+++.++++||.+|.=...
T Consensus 166 ~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~ 242 (347)
T PRK13399 166 LSHDQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQ 242 (347)
T ss_pred ccccccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHH
Confidence 1113456666655544 689976654 233443 243 34567888999987799988875532
Q ss_pred --------------chHHHHHHHHHHhcCCEEEec
Q psy15244 876 --------------GTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 876 --------------GlA~An~laAi~AGad~VD~a 896 (1427)
|........|++.|+.-|+..
T Consensus 243 ~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~ 277 (347)
T PRK13399 243 EIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNID 277 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeC
Confidence 344677788888888887664
No 365
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.79 E-value=14 Score=42.28 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChH-------HH--------------HHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSV-------PN--------------LVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~-------~~--------------~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
..++++...++|+|.+.+=.+.||. ++ .-..++.+++... .-+ ..+.|. +|.
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~--~pv-~lm~y~----n~~ 88 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNT--IPI-VLMGYY----NPI 88 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC--CCE-EEEEec----CHH
Confidence 5567888888999999999777752 32 1223344443321 011 122221 221
Q ss_pred CCCCCHHH-HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 814 KKKYSLNY-YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 814 ~~~~~~~~-~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
..| +.++++.+.++|++.+.+.| +.+++..++++.+|+. ++...+=+=.+.-......+... ..+.
T Consensus 89 -----~~~G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~--g~~~i~~i~P~T~~~~i~~i~~~--~~~~ 155 (242)
T cd04724 89 -----LQYGLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEY--GLDLIFLVAPTTPDERIKKIAEL--ASGF 155 (242)
T ss_pred -----HHhCHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhh--CCCC
Confidence 122 34567788899999999999 4678888999999876 45444433333333322333322 3443
Q ss_pred EE-eccc-cCCCCCC-CCcHHHHHHHHHhC
Q psy15244 893 VD-VAAD-SMSGICS-QPAMGTIVSCLENT 919 (1427)
Q Consensus 893 VD-~av~-GmG~~tg-n~~lE~vv~~L~~~ 919 (1427)
|- .|++ +.|+.++ .+.+.+.+..++..
T Consensus 156 vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 156 IYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 32 2433 3444442 45666777777754
No 366
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=89.78 E-value=0.74 Score=48.56 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred ceEEEEEECCEEeEe----chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecC---CCEEecCCEEEEEEcCCceee
Q psy15244 1324 ERTVFFLYNGQLRSL----DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKV---GQQVKKNDVLIVMSVMKTETL 1396 (1427)
Q Consensus 1324 ~r~v~~elnG~~~~v----d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~---Gd~V~~G~~l~~ieamKme~~ 1396 (1427)
...++--++|+...+ |..-+......-.|-....+.|.||..|+|..++-.. |=.-..|-.|++==-|.
T Consensus 5 ~~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiD---- 80 (156)
T COG2190 5 KEEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGID---- 80 (156)
T ss_pred cEEEEccCCceEEEchhCCchHhhcccccCcEEEecCCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEecee----
Confidence 345667788988776 3322222222222334456999999999998775432 22223344444311111
Q ss_pred eecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1397 i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+...+|.-=+.+|++||.|++||+|++++
T Consensus 81 -TV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 81 -TVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred -eEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 11234666678999999999999999875
No 367
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.74 E-value=9.5 Score=44.73 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCccEEeccCCCchhhhhhccc--cCh----HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCC
Q psy15244 695 NNLYSLEMWGGAVSHTCLKFLK--ECP----WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGID 768 (1427)
Q Consensus 695 ~G~~~iE~~ggatfd~~~rfl~--e~p----~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid 768 (1427)
+|+..+=+.|.+.-. .+.+-. --+ +++++.+.... ++|+..=+ --||.+ |.|+. ..|++..++|+.
T Consensus 32 aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~----d~GyG~-~~~v~-~tv~~~~~aG~a 103 (285)
T TIGR02317 32 AGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDA----DTGFGE-AFNVA-RTVREMEDAGAA 103 (285)
T ss_pred cCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC----CCCCCC-HHHHH-HHHHHHHHcCCe
Confidence 688888665433211 222211 012 33334444333 34543322 348888 88864 588999999999
Q ss_pred EEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 769 IFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 769 ~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
.++|=|... +.+.+..-|++++++... ....|.--.| -. .....+..++-++...++|||
T Consensus 104 gi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~---~d~~IiARTD---a~-~~~g~deAI~Ra~ay~~AGAD 176 (285)
T TIGR02317 104 AVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD---EDFVIIARTD---AR-AVEGLDAAIERAKAYVEAGAD 176 (285)
T ss_pred EEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC---CCEEEEEEcC---cc-cccCHHHHHHHHHHHHHcCCC
Confidence 999999753 445666666777766541 1122222212 11 234688888999999999999
Q ss_pred EEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHH
Q psy15244 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIV 913 (1427)
Q Consensus 836 ~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv 913 (1427)
.|.+. |..+++++..+.+ ++ ++|+ -+..+...++ -+.-..-+.|++.|-.....+ ++.+.++...+
T Consensus 177 ~vfi~---g~~~~e~i~~~~~----~i-~~Pl~~n~~~~~~~p~--~s~~eL~~lGv~~v~~~~~~~--~aa~~a~~~~~ 244 (285)
T TIGR02317 177 MIFPE---ALTSLEEFRQFAK----AV-KVPLLANMTEFGKTPL--FTADELREAGYKMVIYPVTAF--RAMNKAAEAVY 244 (285)
T ss_pred EEEeC---CCCCHHHHHHHHH----hc-CCCEEEEeccCCCCCC--CCHHHHHHcCCcEEEEchHHH--HHHHHHHHHHH
Confidence 99984 5666776665554 44 3566 3333332221 134455678999995554333 44455666777
Q ss_pred HHHHhCCC
Q psy15244 914 SCLENTDK 921 (1427)
Q Consensus 914 ~~L~~~g~ 921 (1427)
..|+..|.
T Consensus 245 ~~l~~~g~ 252 (285)
T TIGR02317 245 NEIKEHGT 252 (285)
T ss_pred HHHHHcCC
Confidence 77766654
No 368
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=89.68 E-value=18 Score=41.97 Aligned_cols=202 Identities=15% Similarity=0.123 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeeecccccccccCCCc-chHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMILRGNSLVGYSNYSP-AEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~Rg~n~vgy~~~~~-nvv~ 756 (1427)
+.+|..++++...+ .|++++=+-.|. ++..++.. .++++.+-+- ..++|.+.+. ...-
T Consensus 37 ~~~d~~~~~~~a~~--~~~~av~v~~~~----------------~~~~~~~~~~~~~l~~~i~--~~~~~~~~~~~~~~~ 96 (267)
T PRK07226 37 GLVDIRDTVNKVAE--GGADAVLMHKGL----------------ARHGHRGYGRDVGLIVHLS--ASTSLSPDPNDKVLV 96 (267)
T ss_pred CcCCHHHHHHHHHh--cCCCEEEeCHhH----------------HhhhccccCCCCcEEEEEc--CCCCCCCCCCcceee
Confidence 55677777777766 588888664321 11112222 2344333222 2334433222 3344
Q ss_pred HHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
..++.|++.|+|.+-+.....+ .+.+....+.+++.|. .+-+ +.|.. +-.-.+.++.+.+...++.+.
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~---pl~v-i~~~~--g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGM---PLLA-MMYPR--GPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCC---cEEE-EEecC--CCccCCCccHHHHHHHHHHHH
Confidence 4588999999997666544432 2355566667777787 3322 33331 110112367788888889999
Q ss_pred HCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEE---eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCC
Q psy15244 831 ESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHV---HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP 907 (1427)
Q Consensus 831 ~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~---H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~ 907 (1427)
++|||.|-.. ..| .+ ++++.+.+.. .+||-. -..+|.-.++.+.-.++++||+.+....+=+ ..+
T Consensus 171 e~GAD~vKt~-~~~--~~----~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~----~~~ 238 (267)
T PRK07226 171 ELGADIVKTN-YTG--DP----ESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVF----QHE 238 (267)
T ss_pred HHCCCEEeeC-CCC--CH----HHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhh----cCC
Confidence 9999998654 111 22 3444444433 456422 2223555678888899999999553332222 235
Q ss_pred cHHHHHHHHHh
Q psy15244 908 AMGTIVSCLEN 918 (1427)
Q Consensus 908 ~lE~vv~~L~~ 918 (1427)
+.++.+..|..
T Consensus 239 ~p~~~~~~l~~ 249 (267)
T PRK07226 239 DPEAITRAISA 249 (267)
T ss_pred CHHHHHHHHHH
Confidence 55666666654
No 369
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=89.62 E-value=13 Score=41.79 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec-ccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR-GNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R-g~n~vgy~~~~~nvv~~ 757 (1427)
...+..++++.+.+ .|+..+++++ .+.++.+++. .++++-...| +-. ++..+.+. -..
T Consensus 25 ~~~~i~~~a~~~~~--~G~~~~~~~~---------------~~~~~~i~~~-~~iPil~~~~~~~~--~~~~~ig~-~~~ 83 (219)
T cd04729 25 SPEIMAAMALAAVQ--GGAVGIRANG---------------VEDIRAIRAR-VDLPIIGLIKRDYP--DSEVYITP-TIE 83 (219)
T ss_pred cHHHHHHHHHHHHH--CCCeEEEcCC---------------HHHHHHHHHh-CCCCEEEEEecCCC--CCCceeCC-CHH
Confidence 44678899999888 7998888532 2456666664 4666532222 210 00001111 123
Q ss_pred HHHHHHhcCCCEEEEeccCC---hHHHHHHHHHHHHHhc-CCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 758 FCRLASQAGIDIFRVFDPLN---SVPNLVKGMDAVQQVT-GGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~n---d~~~~~~~i~~a~~~G-~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
+++.+.++|+|.+-+-.+.. +-..+...++.+++.| . .+.+ . .++++. ++.+.++|
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~---~iiv----~---------v~t~~e----a~~a~~~G 143 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNC---LLMA----D---------ISTLEE----ALNAAKLG 143 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCC---eEEE----E---------CCCHHH----HHHHHHcC
Confidence 68999999999766543332 1126677788888887 4 2221 1 234443 46777899
Q ss_pred CCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEe
Q psy15244 834 AQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDV 895 (1427)
Q Consensus 834 ad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~ 895 (1427)
+|.|.+. +..+.. ......++++.+++.+ ++|+-. ..|.. ..++..++++|||.|=.
T Consensus 144 ~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia----~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 144 FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIA----EGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEE----eCCCCCHHHHHHHHHCCCCEEEE
Confidence 9988542 222211 1112346888898887 788765 45663 47888889999988643
No 370
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=89.56 E-value=7.8 Score=45.41 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH----HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC----CCCCCCHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP----NLVKGMDAVQQVTGGSTIVEATICYAGDLTNP----NKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~----~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p----~~~~~~~~~~~~~a~~ 828 (1427)
+++++|++.|++.|.+=.+-.+.+ ..++.++.+++.|. .+++-+-.-|.-.++ ..+-++++...+.++
T Consensus 88 e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv---~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~- 163 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGA---TVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAE- 163 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeECCccCCcccccceeCCHHHHHHHHH-
Confidence 468999999999988877766543 34567778888888 666655544311111 122456666555443
Q ss_pred HHHCCCCEEEE--ccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 829 LVESGAQVLCL--KDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 829 l~~~Gad~i~i--~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.|+|.|.+ -=.-|.- .|.--.++++.+++.. ++|+-+|. .+|....|...++++|++-|++...
T Consensus 164 --~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 164 --ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG--GSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred --hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC--CCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 469999888 3344422 2334456788888887 78977665 5688999999999999999887643
No 371
>KOG2799|consensus
Probab=89.50 E-value=1.1 Score=52.39 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEeecCCCCCc-----------CeEEecCHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKAAFGGGGR-----------GMRMVANKDAIEENFK 238 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGGr-----------GV~iV~s~eeL~~a~~ 238 (1427)
.-+...+++++.|+.+|+++ +..|++|+.+.++++|- -+|||+-.-.||| ||++|.+++|.+..-.
T Consensus 26 hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~ 103 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVAS 103 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHH
Confidence 34555789999999999998 78999999999999974 3999998666665 6999999999776655
Q ss_pred HH
Q psy15244 239 RA 240 (1427)
Q Consensus 239 ~a 240 (1427)
++
T Consensus 104 qm 105 (434)
T KOG2799|consen 104 QM 105 (434)
T ss_pred Hh
Confidence 44
No 372
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=89.46 E-value=4.1 Score=51.32 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
++.+.+.++.+.+.|||+|-|.=-.+.-.|..+...|+.+++.+ ++||.+-+.| ...+.+|+++||++|+ +++
T Consensus 164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~pISIDT~~-----~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSPVIADTPT-----LDELYEALKAGASGVI-MPD 236 (499)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCcEEEeCCC-----HHHHHHHHHcCCCEEE-ECC
Confidence 48899999999999999999974444344567899999999887 8999998887 4667799999999998 444
Q ss_pred c
Q psy15244 899 S 899 (1427)
Q Consensus 899 G 899 (1427)
|
T Consensus 237 ~ 237 (499)
T TIGR00284 237 V 237 (499)
T ss_pred c
Confidence 4
No 373
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=89.44 E-value=20 Score=42.88 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=92.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.|+.++.+++ +++ .|+..|-+.||-- +++++-++-++.+++.- ..+.+..-| .- ..
T Consensus 58 ~ls~ee~~~~---i~e--~g~~~V~i~GGEP------LL~pdl~eiv~~~~~~g--~~v~l~TNG---~l--------l~ 113 (318)
T TIGR03470 58 RLSVEECLRA---VDE--CGAPVVSIPGGEP------LLHPEIDEIVRGLVARK--KFVYLCTNA---LL--------LE 113 (318)
T ss_pred CCCHHHHHHH---HHH--cCCCEEEEeCccc------cccccHHHHHHHHHHcC--CeEEEecCc---ee--------hH
Confidence 4777776654 455 5888888888754 56666566666665532 223332222 11 12
Q ss_pred HHHHHHHhcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVF-DPLNS-----------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif-~~~nd-----------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+.++...++|...|.|. |+..+ .+...++|+.++++|. .+....... . ..+.+.+.+
T Consensus 114 ~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~---~v~v~~tv~----~----~~n~~ei~~ 182 (318)
T TIGR03470 114 KKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGF---RVTTNTTLF----N----DTDPEEVAE 182 (318)
T ss_pred HHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCC---cEEEEEEEe----C----CCCHHHHHH
Confidence 23455566787766663 33222 3456678888888888 444332221 1 478899999
Q ss_pred HHHHHHHCCCCEEEEc---------cccCcCCHHHHHHHHHHHHHH
Q psy15244 825 LAKQLVESGAQVLCLK---------DMAGLLKPTAAKLLIGSFREK 861 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~---------Dt~G~l~P~~~~~lv~~lr~~ 861 (1427)
+++.+.+.|++.+.+. |..-.+.+.+..+++..+.+.
T Consensus 183 ~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 183 FFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred HHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 9999999999988773 222246677777777776643
No 374
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.34 E-value=0.33 Score=60.20 Aligned_cols=44 Identities=30% Similarity=0.256 Sum_probs=37.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~ 1409 (1427)
.|..-+..|++||+|++||+|+.-... +...+.||++|+|++|.
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 355668999999999999999965544 57899999999999995
No 375
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=89.29 E-value=2.8 Score=48.41 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCC
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSG 902 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~ 902 (1427)
..=++.|+++|+|.| |-+-.++| +.+++..+|+.| ++|+-.-|-| +..++.|+++||++|-++..|
T Consensus 79 ~~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~--- 144 (287)
T TIGR00343 79 FVEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA--- 144 (287)
T ss_pred HHHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC---
Confidence 344889999999999 88889999 689999999999 8998776665 667799999999999999764
Q ss_pred CCCC
Q psy15244 903 ICSQ 906 (1427)
Q Consensus 903 ~tgn 906 (1427)
+|||
T Consensus 145 gTg~ 148 (287)
T TIGR00343 145 GTGN 148 (287)
T ss_pred CCcc
Confidence 4665
No 376
>PRK08185 hypothetical protein; Provisional
Probab=89.28 E-value=9.3 Score=44.75 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCCEEEEeccCChH-HHH---HHHHHHHHHhcCCCcEEEEEEEeeccCCCCC-----CC---CCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV-PNL---VKGMDAVQQVTGGSTIVEATICYAGDLTNPN-----KK---KYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~-~~~---~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~-----~~---~~~~~~~~~ 824 (1427)
+.++.|.+.|.+.|-+=.|--+. +|+ ++.++.++..|. .+++-+-..+ +..+ .+ .++++...+
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv---~vE~ElG~vg--~~e~~~~~~~~~~~~t~peea~~ 156 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGV---SVEGELGTIG--NTGTSIEGGVSEIIYTDPEQAED 156 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeecc--CcccccccccccccCCCHHHHHH
Confidence 45889999999886554444333 344 566677788888 7777664432 1111 01 234544433
Q ss_pred HHHHHHHCCCCEEEEc-cccCcC-----CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLK-DMAGLL-----KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~-Dt~G~l-----~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .+.|+|.+.++ -|++.. +|.--.++++.+++.+ ++||-+|.-. |..-.....|+..|+.-|+...
T Consensus 157 f~---~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~-~iPLVlHGgs--g~~~e~~~~ai~~GI~KiNi~T 229 (283)
T PRK08185 157 FV---SRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV-DIPLVLHGGS--ANPDAEIAESVQLGVGKINISS 229 (283)
T ss_pred HH---HhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh-CCCEEEECCC--CCCHHHHHHHHHCCCeEEEeCh
Confidence 33 33499988871 122222 3544577888999887 8999888765 5557888999999999997653
No 377
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=89.20 E-value=0.87 Score=55.35 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+.-+.|+.|+....=..-..+++- -+..|.|+.+|.|.++++++||.|++||+|+.|+
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld 93 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID 93 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEEC
Confidence 4555566666543322233445544 3568999999999999999999999999999986
No 378
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=89.10 E-value=36 Score=37.50 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=102.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccC-CCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWG-GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~g-gatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+...+..+.++.+.+ .|++.|++.- ...|.-. ..-..+.++.+++.. +.++...+-. .| ..
T Consensus 9 ~d~~~~~~~~~~~~~--~G~~~i~l~~~d~~~~~~----~~~~~~~~~~i~~~~-~~~~~v~l~~----------~d-~~ 70 (211)
T cd00429 9 ADFANLGEELKRLEE--AGADWIHIDVMDGHFVPN----LTFGPPVVKALRKHT-DLPLDVHLMV----------EN-PE 70 (211)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEecccCCCCCc----cccCHHHHHHHHhhC-CCcEEEEeee----------CC-HH
Confidence 555566777777777 7999998731 0011000 111236777888765 3443322211 12 24
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
.|++.+.++|+|.+.+-+..+ +.+...++..++.|. .+...+ .+. .+.+.+.+ +.+ ++|.
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~~~---~~g~~~-------~~~---~~~~~~~~----~~~-~~d~ 130 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKELGM---KAGVAL-------NPG---TPVEVLEP----YLD-EVDL 130 (211)
T ss_pred HHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHCCC---eEEEEe-------cCC---CCHHHHHH----HHh-hCCE
Confidence 579999999999987776554 456677888888887 443321 121 22333333 222 2676
Q ss_pred EEEc----cccCcCCHHHHHHHHHHHHHHcC----CceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 837 LCLK----DMAGLLKPTAAKLLIGSFREKYP----NILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 837 i~i~----Dt~G~l~P~~~~~lv~~lr~~~p----~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+- =+.|...+....+.++.+|+..+ ++|+.+= .|....|.-.++++|+|.|
T Consensus 131 i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i 191 (211)
T cd00429 131 VLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL 191 (211)
T ss_pred EEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence 6441 12333344566677777877663 4676553 3777888889999999987
No 379
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.99 E-value=23 Score=41.86 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcC-CCEEEEecc-----------CChHHHHHHHHHHHHHhc-CCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 755 VGAFCRLASQAG-IDIFRVFDP-----------LNSVPNLVKGMDAVQQVT-GGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 755 v~~~v~~a~~~G-id~~rif~~-----------~nd~~~~~~~i~~a~~~G-~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
..+..+++.+.| +|.|-|-.+ ..+.+.+.+.++.+++.- . -+.+-+ +| +.+.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~---pv~vKl-------~~-----~~~~ 170 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV---PVIVKL-------TP-----NVTD 170 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC---CEEEEc-------CC-----Cchh
Confidence 344566666788 999987332 224567778888888763 3 121111 22 3346
Q ss_pred HHHHHHHHHHCCCCEEEEcccc------------------CcCCHH----HHHHHHHHHHHHcCCceEEEeecCCcchHH
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMA------------------GLLKPT----AAKLLIGSFREKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~------------------G~l~P~----~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
+.++++.++++|+|.|.+-.|. |.+.+. ...+++..+++.+ ++||-.=.--+.+
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~--- 246 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSA--- 246 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCH---
Confidence 7889999999999988764432 112111 2467888899887 7888764444333
Q ss_pred HHHHHHHHhcCCEEEeccccCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG 901 (1427)
..+.+++.+|||.|..+-.-+.
T Consensus 247 ~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 247 EDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred HHHHHHHHcCCCceeEcHHHhc
Confidence 4556667789999887765554
No 380
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=88.93 E-value=1 Score=55.30 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|+..+|.++.|+.+ .. |..-+.+|-+ .....|.||..|+|.+++|
T Consensus 16 eg~i~~w~v~~Gd~V-----------~~-Gd~l~~vEtd----------------------K~~~ei~a~~~G~v~~i~v 61 (407)
T PRK05704 16 EATIATWHKKPGDAV-----------KR-DEVLVEIETD----------------------KVVLEVPAPAAGVLSEILA 61 (407)
T ss_pred eEEEEEEEeCCcCEe-----------CC-CCEEEEEEec----------------------CceeEEecCCCEEEEEEEe
Confidence 578889999999886 22 4333333322 1346789999999999999
Q ss_pred cCCCEEecCCEEEEEEcCC
Q psy15244 1374 KVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamK 1392 (1427)
++||.|+.|++|+.|+...
T Consensus 62 ~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 62 EEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCCEeCCCCEEEEEecCC
Confidence 9999999999999998643
No 381
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=88.93 E-value=1.4 Score=50.89 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
..| ..=++.+.++|+|+| |-+...+| +.+++..+|+.+ ++++-.-|-+ +..++.|+++|+|+|-+|+.
T Consensus 74 ~~~-~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~st-----leEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 74 IGH-FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGARN-----LGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred hhH-HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCCC-----HHHHHHHHHCCCCEEEecCC
Confidence 344 455889999999999 87777888 688999999999 8887666554 67889999999999999987
Q ss_pred cCCCCCCC
Q psy15244 899 SMSGICSQ 906 (1427)
Q Consensus 899 GmG~~tgn 906 (1427)
| .||+
T Consensus 142 g---yT~~ 146 (283)
T cd04727 142 A---GTGN 146 (283)
T ss_pred C---CCCc
Confidence 4 4554
No 382
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.91 E-value=1.1 Score=52.83 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--ceeeeecCCCeEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--TETLIHASADGVVKEI 1408 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--me~~i~Ap~~G~V~~i 1408 (1427)
...|.||-+| ++...++.|+.|++||+|+.|-..= -..+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4568999999 7789999999999999999996543 2346899999999765
No 383
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.87 E-value=19 Score=38.61 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHH-----HHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNL-----VKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~-----~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
..++++.+.+.|++.+.+-....+.... +......+..+. .+.+.+.+. + ..+++...++.+
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~------~~~~~~~~a~~~ 80 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDL---PLGVQLAIN----D------AAAAVDIAAAAA 80 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCC---cEEEEEccC----C------chhhhhHHHHHH
Confidence 4556777888888887766544332211 112222333344 222322222 1 122233337888
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++|+|.|.|-...+.. |....++++.+++.+|++++..=+|.......+. +.++|++.|...-..-
T Consensus 81 ~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 81 RAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcC
Confidence 89999999998887754 8888999999999887788766666554433221 5788999997664433
No 384
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.79 E-value=22 Score=41.28 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=112.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCceeeeecccccccccCCCc--
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQMILRGNSLVGYSNYSP-- 752 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~qml~Rg~n~vgy~~~~~-- 752 (1427)
++.++.++.+ .+ .|++.+|++.+....-......+ +.++.+++.+ .+..+.+... ...++.+ ++
T Consensus 10 ~~l~~~l~~a---~~--~G~d~vEl~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~--~~~~~~~-~~~~ 78 (279)
T cd00019 10 FGLENALKRA---KE--IGFDTVAMFLGNPRSWLSRPLKK---ERAEKFKAIAEEGPSICLSVHAP--YLINLAS-PDKE 78 (279)
T ss_pred ccHHHHHHHH---HH--cCCCEEEEEcCCCCccCCCCCCH---HHHHHHHHHHHHcCCCcEEEEcC--ceeccCC-CCHH
Confidence 5555555554 45 59999998643221100011111 4455555544 2345554321 1112211 22
Q ss_pred ------chHHHHHHHHHhcCCCEEEEeccCCh-----------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC-C
Q psy15244 753 ------AEVGAFCRLASQAGIDIFRVFDPLNS-----------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN-K 814 (1427)
Q Consensus 753 ------nvv~~~v~~a~~~Gid~~rif~~~nd-----------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~-~ 814 (1427)
+..+..++.|.+.|++.++++..... ++.+++.++.+++.|. . .++.... .+. .
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi---~--l~lEn~~---~~~~~ 150 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV---V--IALETMA---GQGNE 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC---E--EEEeCCC---CCCCC
Confidence 23466788889999999888655431 1355566666666666 2 2222221 111 1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEE-EEccccCcC-------CHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHH
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVL-CLKDMAGLL-------KPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l-------~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laA 885 (1427)
...+.+.+.++++++-. -+.+ .+-|+.=+. +|....+.+..+.+.++ +-..++|.||..+...
T Consensus 151 ~~~t~~~~~~li~~v~~--~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~------ 222 (279)
T cd00019 151 IGSSFEELKEIIDLIKE--KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG------ 222 (279)
T ss_pred CCCCHHHHHHHHHhcCC--CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc------
Confidence 13566777777766630 2222 333544322 24456666777766653 2358999999765310
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC-CCCCCh
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK-RCGIDL 927 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~-~tgidl 927 (1427)
+ .. + .-..+ +.|..+...++..|+..|+ +-.+-+
T Consensus 223 ---~-~~-~-~~~~~--G~G~id~~~~l~~L~~~~y~~g~~~l 257 (279)
T cd00019 223 ---S-GK-D-RHEPI--GEGDIDGEELFKELKKDPYQNIPLIL 257 (279)
T ss_pred ---C-CC-c-cccCC--CCCCcCCHHHHHHHHhCcccCCCEEE
Confidence 0 00 0 11222 3466788899999999887 644444
No 385
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.71 E-value=8.4 Score=45.15 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~~ 824 (1427)
+.|.+|+++|.+.+-+=.|.-+ ++.-++.++.|+..|. .||+-|-..+. .++. ..++++...+
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv---sVEaElG~igg--~e~~~~~~~~~~~~T~peeA~~ 162 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDA---SVEAELGRLGG--QEDDLVVDEKDAMYTNPDAAAE 162 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeeccC--ccCCcccccccccCCCHHHHHH
Confidence 5689999999997654433333 3455788999999999 88887766542 2221 1346666666
Q ss_pred HHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++++ .|+|.+.++= .=|.- .|.-=.++++.+++.. ++||.+|. .+|+.--....|++.|+.-|+...
T Consensus 163 Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~-~iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 163 FVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV-SIPLVLHG--ASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred HHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEEeCc
Confidence 6554 6999777642 22332 4555567889999887 88886665 668888899999999999998764
No 386
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.71 E-value=16 Score=42.27 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH---------------------HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV---------------------PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~---------------------~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p 812 (1427)
.++++...+.|+|.+-+-.+.||- +.+-..++.+++. .. -. ..++|. +|
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~---pl-v~m~Y~----Np 98 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI---PI-GLLTYY----NL 98 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---CE-EEEEec----cH
Confidence 455777788999999999999963 1222334444433 22 12 245554 44
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
-- .|- +.++++.+.++|++.+.+.|- .+++..+++..+++. ++...+=+..++-..-...+++...|.-.
T Consensus 99 i~-~~G---~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~--gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 99 IF-RKG---VEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKH--GVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred Hh-hhh---HHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHC--CCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 10 122 245677888999999999994 568888999999876 56666666666666555566666666655
Q ss_pred EEeccccCCCCC--CCCcHHHHHHHHHhC
Q psy15244 893 VDVAADSMSGIC--SQPAMGTIVSCLENT 919 (1427)
Q Consensus 893 VD~av~GmG~~t--gn~~lE~vv~~L~~~ 919 (1427)
+= |+.|..|-. -++++.+.+..++..
T Consensus 169 ~v-s~~G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 169 LV-SRAGVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred EE-ECCCCCCCcccCChhHHHHHHHHHhh
Confidence 43 345665543 345666777777653
No 387
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.61 E-value=1.5 Score=53.24 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcC-CEEEEEecCCCccCcccccc---ceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 57 MEKILIANRSEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKV---DQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elG-i~~vav~s~~d~~s~~~~~a---De~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
|++|||+|.|.++..+++.|.+.| .++.+.+...+......... -++..+ +-.+.+++.++.++. |
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v--------D~~d~~al~~li~~~--d 70 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV--------DAADVDALVALIKDF--D 70 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe--------cccChHHHHHHHhcC--C
Confidence 579999999999999999999999 78777765544322211111 112222 235678999999987 7
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc
Q psy15244 133 AIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT 190 (1427)
Q Consensus 133 aI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~ 190 (1427)
+|+-.-.+. -+..+.++|.+.|+.++--+..-- +.+..+..++++|+-..++.
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCc----hhhhhhHHHHHcCeEEEccc
Confidence 777653321 234788999999999873322211 13678888999998776654
No 388
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.60 E-value=18 Score=42.86 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccC--------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL--------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~--------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++.+.+.|+|.+-+-.+. .+.+.+.+.++.+++.-.. -+.+ - ..| +.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~--Pv~v----K---l~~-----~~~ 180 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI--PVIA----K---LTP-----NIT 180 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC--CeEE----E---CCC-----Cch
Confidence 3445566666799988885554 2345677777777764320 1111 1 123 234
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCc------------------------CCH---HHHHHHHHHHHHHc-CCceEEEeec
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGL------------------------LKP---TAAKLLIGSFREKY-PNILIHVHTH 872 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~------------------------l~P---~~~~~lv~~lr~~~-p~ipi~~H~H 872 (1427)
.+.++++.+.++|+|-|.+..|... .-| ..+.+.|..+++.+ +++||-.-.=
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 6889999999999999987665532 111 12467888899887 3788755333
Q ss_pred CCcchHHHHHHHHHHhcCCEEEeccccCCCCCCC
Q psy15244 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQ 906 (1427)
Q Consensus 873 nd~GlA~An~laAi~AGad~VD~av~GmG~~tgn 906 (1427)
=..+ .-+++.+.+||+.|..+-.-|.++++.
T Consensus 261 I~~~---~da~~~l~aGA~~V~i~ta~~~~g~~~ 291 (299)
T cd02940 261 IESW---EDAAEFLLLGASVVQVCTAVMNQGFTI 291 (299)
T ss_pred CCCH---HHHHHHHHcCCChheEceeecccCCcH
Confidence 3333 345666679999999988888776553
No 389
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.48 E-value=0.45 Score=58.92 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=32.3
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 45689999999999999999999999999999964
No 390
>PRK08444 hypothetical protein; Provisional
Probab=88.48 E-value=14 Score=44.72 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCH----HHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP----TAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLA 884 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P----~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~la 884 (1427)
..+.+.+++.++++.+.|++.++|. .| ..| +...++++.+|+.+|++.|+. |.=...|+.+--.+.
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 4688999999999999999999997 34 334 567789999999886444332 222267888855554
Q ss_pred -HHHhcCCEEEeccccCC-------CCCCCCcHHHHHHH---HHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccc
Q psy15244 885 -CVKAGADIVDVAADSMS-------GICSQPAMGTIVSC---LENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953 (1427)
Q Consensus 885 -Ai~AGad~VD~av~GmG-------~~tgn~~lE~vv~~---L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG 953 (1427)
-.+||++.+..+-.-+= =+++..+.+..+.. .+..|+.+.--+ ++|
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~-----------------------l~G 212 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATM-----------------------LFG 212 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcccee-----------------------EEe
Confidence 44689987653100000 03444454444443 334454432111 233
Q ss_pred cchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCCC
Q psy15244 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF-GLDFEDVKRAYRTANFLLGDII 1032 (1427)
Q Consensus 954 ~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~-gl~~~ev~~~~~~v~~~lG~~~ 1032 (1427)
-+ +......+.+...|..-. +.++.+.-+.+.=+|.|- .+ ... +....|.++.++-.|-.|.+++
T Consensus 213 ~g---Et~edrv~hl~~Lr~Lq~-----~t~gf~~fIp~~f~~~~t--~l----~~~~~~~~~e~Lr~iAi~Rl~L~~i~ 278 (353)
T PRK08444 213 HI---ENREHRIDHMLRLRDLQD-----KTGGFNAFIPLVYQRENN--YL----KVEKFPSSQEILKTIAISRILLDNIP 278 (353)
T ss_pred cC---CCHHHHHHHHHHHHHhcc-----ccCCceEEEecccCCCCC--cC----CCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 33 333344455555544321 111222223232223221 22 111 2367889999999999999876
Q ss_pred ccccchhhHHH-HHHHHHHcC
Q psy15244 1033 KCTPSSKVVAD-LAIFMTQEK 1052 (1427)
Q Consensus 1033 ~vTP~sq~vg~-~a~~~v~~~ 1052 (1427)
-+-.++-..|- .|+.....|
T Consensus 279 ni~a~w~~~g~~~~q~~L~~G 299 (353)
T PRK08444 279 HIKAYWATLTLNLALVAQEFG 299 (353)
T ss_pred ccccccccCcHHHHHHHHhcC
Confidence 66444433332 444444433
No 391
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.43 E-value=16 Score=43.07 Aligned_cols=208 Identities=13% Similarity=0.160 Sum_probs=117.4
Q ss_pred HHHHhhcCCccEEeccCCCchhhhhhccc--cChHHH----HHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHH
Q psy15244 688 PFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWER----LAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRL 761 (1427)
Q Consensus 688 ~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~er----l~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~ 761 (1427)
....+ .|+..|=+.|.+.-...+.+-. --+|+. ++.|...+ ++|+.. =+ --||. -|.|+ ...|++
T Consensus 31 ri~e~--~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~-~iPvia--D~--d~GyG-~~~~v-~r~V~~ 101 (292)
T PRK11320 31 LLAER--AGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC-DLPLLV--DI--DTGFG-GAFNI-ARTVKS 101 (292)
T ss_pred HHHHH--cCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEE--EC--CCCCC-CHHHH-HHHHHH
Confidence 34445 6988886655332112222211 123433 33333332 244332 22 24777 67774 568899
Q ss_pred HHhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 762 ASQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 762 a~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
..++|+.-++|=|... +.+.+..-|++++++.. -....|.--.| -. .....+..++-++.
T Consensus 102 ~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~---~~d~~IiARTD---a~-~~~g~deAI~Ra~a 174 (292)
T PRK11320 102 MIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART---DPDFVIMARTD---AL-AVEGLDAAIERAQA 174 (292)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc---CCCeEEEEecC---cc-cccCHHHHHHHHHH
Confidence 9999999999999752 45566666676766543 11122222212 11 13568889999999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
..++|||.|.+. |.-+++++.++.+.+ ++|+-+-.........-+.-.--+.|++.|-.....+ ++...+
T Consensus 175 Y~eAGAD~ifi~---~~~~~~~i~~~~~~~-----~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~--~aa~~a 244 (292)
T PRK11320 175 YVEAGADMIFPE---AMTELEMYRRFADAV-----KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAF--RAMNKA 244 (292)
T ss_pred HHHcCCCEEEec---CCCCHHHHHHHHHhc-----CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH--HHHHHH
Confidence 999999999985 566777777666544 4566332221111111123345567999996554433 334445
Q ss_pred HHHHHHHHHhCCC
Q psy15244 909 MGTIVSCLENTDK 921 (1427)
Q Consensus 909 lE~vv~~L~~~g~ 921 (1427)
+..++..++..|.
T Consensus 245 ~~~~~~~l~~~g~ 257 (292)
T PRK11320 245 AENVYEAIRRDGT 257 (292)
T ss_pred HHHHHHHHHHcCC
Confidence 6666666665554
No 392
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.38 E-value=16 Score=41.94 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=113.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
=+.++++++|+.+.+ .|+..+=. |-+-|.--+++-+. .+.|+.|.+.....-+..+.. +-+.
T Consensus 26 Es~e~~~~~a~~~~~--~g~~~~r~g~~kpRts~~sf~G~G---~~gl~~L~~~~~~~Gl~~~Te----------v~d~- 89 (250)
T PRK13397 26 ESYDHIRLAASSAKK--LGYNYFRGGAYKPRTSAASFQGLG---LQGIRYLHEVCQEFGLLSVSE----------IMSE- 89 (250)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEecccCCCCCCcccCCCC---HHHHHHHHHHHHHcCCCEEEe----------eCCH-
Confidence 466889999999998 68766642 22222222222222 456777776654444443332 1222
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..++.+.+ .+|++.|-... ..|. ..++++.+.|+ -+- --+| .-.+++.+...++.+.+.|.+
T Consensus 90 -~~v~~~~e-~vdilqIgs~~--~~n~-~LL~~va~tgk---PVi---lk~G-------~~~t~~e~~~A~e~i~~~Gn~ 151 (250)
T PRK13397 90 -RQLEEAYD-YLDVIQVGARN--MQNF-EFLKTLSHIDK---PIL---FKRG-------LMATIEEYLGALSYLQDTGKS 151 (250)
T ss_pred -HHHHHHHh-cCCEEEECccc--ccCH-HHHHHHHccCC---eEE---EeCC-------CCCCHHHHHHHHHHHHHcCCC
Confidence 22677767 59988886543 3332 23444555676 221 1221 147889999999999999998
Q ss_pred EEEEcc--ccCcCCHHH-HH--HHHHHHHHHcCCceEEE-eecCCcc---hHHHHHHHHHHhcCC--EEEecccc
Q psy15244 836 VLCLKD--MAGLLKPTA-AK--LLIGSFREKYPNILIHV-HTHDMAG---TGVATTLACVKAGAD--IVDVAADS 899 (1427)
Q Consensus 836 ~i~i~D--t~G~l~P~~-~~--~lv~~lr~~~p~ipi~~-H~Hnd~G---lA~An~laAi~AGad--~VD~av~G 899 (1427)
.|.|+- +.|.-+|.+ .. .-+..+|+.+ ++||.+ -+|- .| +-.+.+.+|+.+||| +|+.-.++
T Consensus 152 ~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~-~lPVivd~SHs-~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 152 NIILCERGVRGYDVETRNMLDIMAVPIIQQKT-DLPIIVDVSHS-TGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred eEEEEccccCCCCCccccccCHHHHHHHHHHh-CCCeEECCCCC-CcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 888886 444444433 22 3467888877 789655 2344 33 344778999999999 88776554
No 393
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=88.36 E-value=0.52 Score=56.24 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=31.3
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.||.+|+|.+++|++||.|++||+|++|+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld 74 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLD 74 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEEC
Confidence 577999999999999999999999999999986
No 394
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=88.29 E-value=47 Score=39.89 Aligned_cols=219 Identities=13% Similarity=0.041 Sum_probs=118.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhc----cc----cChHHHHHHHHHhCCCCceeeeeccccccccc
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF----LK----ECPWERLAELRELIPNIPFQMILRGNSLVGYS 748 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rf----l~----e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~ 748 (1427)
.++.+++++.++.+.+ .|+..+-+.||-..+-.+.+ +. ++..+.++.+.+......+ ....
T Consensus 40 ~ls~eei~~~~~~~~~--~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~---~~~~------ 108 (336)
T PRK06245 40 LLSPEEVKEILRRGAD--AGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL---LPHT------ 108 (336)
T ss_pred cCCHHHHHHHHHHHHH--CCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC---Cccc------
Confidence 5899999999999988 79999888777542222111 11 2344556555543321100 0001
Q ss_pred CCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 749 NYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 749 ~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
.+..+-.+.++..++.|++.--...+.+ .......+++.+++.|. .+...+.|. + .
T Consensus 109 -~~~~lt~e~i~~Lk~ag~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi---~~~~~~i~G--~-g--- 178 (336)
T PRK06245 109 -NAGILTREEMEKLKEVNASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI---PFTTGILIG--I-G--- 178 (336)
T ss_pred -cCCCCCHHHHHHHHHhCCCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC---ceeeeeeeE--C-C---
Confidence 1222334445555554433111112222 12334567788888888 565556655 1 1
Q ss_pred CCCCHHHHHH---HHHHHH-HC-CCCEEEE------ccc----cCcCCHHHHHHHHHHHHHHcCC-ceEEEeecCCcchH
Q psy15244 815 KKYSLNYYED---LAKQLV-ES-GAQVLCL------KDM----AGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTG 878 (1427)
Q Consensus 815 ~~~~~~~~~~---~a~~l~-~~-Gad~i~i------~Dt----~G~l~P~~~~~lv~~lr~~~p~-ipi~~H~Hnd~GlA 878 (1427)
-+.+..++ .++.+. +. |++.+.+ ..| .....+.+..+++...|..+|+ +.|..- -++|.
T Consensus 179 --Et~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~~i~i~~~--~~~~~- 253 (336)
T PRK06245 179 --ETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPDISIQVP--PNLNR- 253 (336)
T ss_pred --CCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCCCceEecC--Cccch-
Confidence 23344444 444443 22 2444331 122 1235668888888888888853 333222 24444
Q ss_pred HHHHHHHHHhcCCEEEeccccCCCCCC----CCcHHHHHHHHHhCCCC
Q psy15244 879 VATTLACVKAGADIVDVAADSMSGICS----QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~av~GmG~~tg----n~~lE~vv~~L~~~g~~ 922 (1427)
.-...++.+||+-+++++..-|+--. .++.++++.+++..|+.
T Consensus 254 -~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 254 -DTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWP 300 (336)
T ss_pred -HHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCC
Confidence 33445699999999888764333211 35788999988887654
No 395
>PRK01060 endonuclease IV; Provisional
Probab=88.26 E-value=37 Score=39.37 Aligned_cols=208 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH-
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC- 759 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v- 759 (1427)
.++...++.+.+ .|++.+|+|.+.-.......+.+.-.+.++++.+...=.......-+.-........+.+.+..+
T Consensus 12 ~~~~~~l~~~~~--~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~ 89 (281)
T PRK01060 12 GGLEGAVAEAAE--IGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRD 89 (281)
T ss_pred CCHHHHHHHHHH--cCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHH
Q ss_pred ------HHHHhcCCCEEEEeccCC--------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC--CCHHHHH
Q psy15244 760 ------RLASQAGIDIFRVFDPLN--------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK--YSLNYYE 823 (1427)
Q Consensus 760 ------~~a~~~Gid~~rif~~~n--------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~--~~~~~~~ 823 (1427)
+.|.+.|++.+.+..... .++.+.++++.+.+... -+..+|... ....+. .+.+.+.
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~---gv~l~iEn~----~~~~~~~~~~~~~~~ 162 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQ---GVTIVLENT----AGQGSELGRRFEELA 162 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCC---CCEEEEecC----CCCCCcccCCHHHHH
Q ss_pred HHHHHHHHCCCCE-EEEc-ccc-----CcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 824 DLAKQLVESGAQV-LCLK-DMA-----GLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 824 ~~a~~l~~~Gad~-i~i~-Dt~-----G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++++.+ +-+. +.++ |+. |.-.+....+++..+.+.++ +--.++|.||+.+
T Consensus 163 ~l~~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~------------------- 220 (281)
T PRK01060 163 RIIDGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKN------------------- 220 (281)
T ss_pred HHHHhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCC-------------------
Q ss_pred ccccCCCCC--------CCCcHHHHHHHHHhCCCC
Q psy15244 896 AADSMSGIC--------SQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 896 av~GmG~~t--------gn~~lE~vv~~L~~~g~~ 922 (1427)
+.|++. |..+...++.+|+..|++
T Consensus 221 ---~~~~~~d~H~~~G~G~id~~~~~~~L~~~~y~ 252 (281)
T PRK01060 221 ---EFGSRKDRHANLGEGTIGFDALRYIVHDPRFD 252 (281)
T ss_pred ---cccCCCCcccCCcCCcCCHHHHHHHHhCcccC
No 396
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=88.19 E-value=13 Score=43.05 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH-----------HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP-----------TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P-----------~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+.+..++.++++.+.|||+|-|. ++...| +++..+|+.+++.+ ++||.+-+=+ ...+.+|
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG--~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT~~-----~~v~~aa 92 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIG--GESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDTFN-----AEVAEAA 92 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC--CCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCc-----HHHHHHH
Confidence 589999999999999999999886 233333 45777888888776 8899876654 4666789
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC--------CCCCC-----------hhhHHHHHHHHHHHhCCCCC
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK--------RCGID-----------LHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~--------~tgid-----------l~~L~~l~~~v~~~~g~~~~ 946 (1427)
+++|+++|+..- |. ...+.+..++ ++.+. ..+.+ -+.+..+.+.+++....-++
T Consensus 93 L~~g~~iINdis-~~---~~~~~~~~l~---~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~ 165 (258)
T cd00423 93 LKAGADIINDVS-GG---RGDPEMAPLA---AEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIP 165 (258)
T ss_pred HHhCCCEEEeCC-CC---CCChHHHHHH---HHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987553 22 2223433333 33221 11111 11244445555556555555
Q ss_pred CCC----cccccchhhhhHHHHHHHHHHhhhhcCCC-CCCCCCcCcccEEEec
Q psy15244 947 AHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPF-ECTDLKAASSEAYLYE 994 (1427)
Q Consensus 947 ~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f-~~~~~~g~~~~v~~~~ 994 (1427)
.++ |.+|- .. ...+.-.+.+.-..|..| ..|-+.|.++.-...+
T Consensus 166 ~~~IilDPg~g~---~k-~~~~~~~~l~~i~~~~~~~g~Pil~G~Snksf~~~ 214 (258)
T cd00423 166 PEDIILDPGIGF---GK-TEEHNLELLRRLDAFRELPGLPLLLGVSRKSFLGD 214 (258)
T ss_pred HHHEEEeCCCCc---cC-CHHHHHHHHHHHHHHHhcCCCcEEEEeccchhhcc
Confidence 555 55552 22 223333344443445555 4466666665555543
No 397
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=88.17 E-value=16 Score=43.84 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=86.4
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..+++.+.+ .|+..|-+.||-- +++.+=.+-++.+++. +.. .+.+..-|. .+
T Consensus 44 ~ls~eei~~li~~~~~--~Gv~~I~~tGGEP------llr~dl~~li~~i~~~-~~l~~i~itTNG~-----------ll 103 (329)
T PRK13361 44 VLSLEELAWLAQAFTE--LGVRKIRLTGGEP------LVRRGCDQLVARLGKL-PGLEELSLTTNGS-----------RL 103 (329)
T ss_pred CCCHHHHHHHHHHHHH--CCCCEEEEECcCC------CccccHHHHHHHHHhC-CCCceEEEEeChh-----------HH
Confidence 5899999999999988 7999999888754 4555544445555543 332 244433331 12
Q ss_pred HHHHHHHHhcCCCEEEEeccC-C-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPL-N-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~-n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.|..-. + +++.+..+++.+++.|.. .+....... + ..+.+.+.
T Consensus 104 ~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~--~v~in~v~~-----~---g~N~~ei~ 173 (329)
T PRK13361 104 ARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFE--RIKLNAVIL-----R---GQNDDEVL 173 (329)
T ss_pred HHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCC--ceEEEEEEE-----C---CCCHHHHH
Confidence 345777788999988775432 2 245677788888888862 122221111 1 36778999
Q ss_pred HHHHHHHHCCCCEEE
Q psy15244 824 DLAKQLVESGAQVLC 838 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~ 838 (1427)
++++.+.+.|++...
T Consensus 174 ~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 174 DLVEFCRERGLDIAF 188 (329)
T ss_pred HHHHHHHhcCCeEEE
Confidence 999999999998543
No 398
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=88.16 E-value=1.1 Score=55.17 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=48.9
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
+|...+|.++.||++ .. |+.-+.+|- |+ ...+|-||..|+|.++++
T Consensus 16 EG~I~~W~~k~GD~V-----------~~-gd~L~eVeT-------DK---------------a~~EV~ap~~G~l~~i~~ 61 (404)
T COG0508 16 EGTIVEWLKKVGDKV-----------KE-GDVLVEVET-------DK---------------ATMEVPAPDAGVLAKILV 61 (404)
T ss_pred eEEEEEEecCCCCee-----------cC-CCeeEEEEc-------Cc---------------eeEEecCCCCeEEEEEec
Confidence 688999999999997 22 322222221 11 235789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++||.|.-|++|+.|+.-
T Consensus 62 ~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 62 EEGDTVPVGAVIARIEEE 79 (404)
T ss_pred cCCCEEcCCCeEEEEecC
Confidence 999999999999999874
No 399
>PRK15452 putative protease; Provisional
Probab=88.08 E-value=7.1 Score=48.62 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=84.1
Q ss_pred HHHHHhcCCCEEEEecc---------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDP---------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~---------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.|+++|+|.|-+-.. .-..+.++++++.+++.|. .+-.++..- +. ..+.+.+.+..+.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~---kvyvt~n~i-----~~--e~el~~~~~~l~~l 85 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGK---KFYVVVNIA-----PH--NAKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCC---EEEEEecCc-----CC--HHHHHHHHHHHHHH
Confidence 78899999999888322 1134789999999999998 554443211 11 24567788889999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcc-hHHHHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG-TGVATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G-lA~An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
.++|+|.|.+.|. | ++..+++..|+++||+-+.-+.- ...++.+ .+.|++.|-.+- --+
T Consensus 86 ~~~gvDgvIV~d~-G---------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~--~~lG~~rvvLSr--------ELs 145 (443)
T PRK15452 86 IAMKPDALIMSDP-G---------LIMMVREHFPEMPIHLSVQANAVNWATVKFW--QQMGLTRVILSR--------ELS 145 (443)
T ss_pred HhCCCCEEEEcCH-H---------HHHHHHHhCCCCeEEEEecccCCCHHHHHHH--HHCCCcEEEECC--------cCC
Confidence 9999999999983 3 34566777788988775432222 2222333 357998875443 235
Q ss_pred HHHHHHHH
Q psy15244 909 MGTIVSCL 916 (1427)
Q Consensus 909 lE~vv~~L 916 (1427)
++++-...
T Consensus 146 l~EI~~i~ 153 (443)
T PRK15452 146 LEEIEEIR 153 (443)
T ss_pred HHHHHHHH
Confidence 66665544
No 400
>PRK08508 biotin synthase; Provisional
Probab=88.07 E-value=61 Score=37.99 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=128.5
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec-cCCCchhhhhhccccChHHHH----HHHHHhCCCCceeeeecccccccccCCCc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM-WGGAVSHTCLKFLKECPWERL----AELRELIPNIPFQMILRGNSLVGYSNYSP 752 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~-~ggatfd~~~rfl~e~p~erl----~~lr~~~p~~~~qml~Rg~n~vgy~~~~~ 752 (1427)
++.+++++.|+...+ .|+..+=+ .+|-++ ++..++++ +.+++..|++.+.. + .|+.
T Consensus 40 ~s~eeI~~~a~~a~~--~g~~~~~lv~sg~~~-------~~~~~e~~~ei~~~ik~~~p~l~i~~-s-----~G~~---- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAKA--NGALGFCLVTSGRGL-------DDKKLEYVAEAAKAVKKEVPGLHLIA-C-----NGTA---- 100 (279)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEeccCCC-------CcccHHHHHHHHHHHHhhCCCcEEEe-c-----CCCC----
Confidence 789999999998776 58876654 333322 23345554 45555555543211 1 1322
Q ss_pred chHHHHHHHHHhcCCCEEEEeccC-----------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPL-----------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~-----------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
..+.+++..++|+|.+.+-.-. .+++...+.++.++++|+ .+...+.+.- .-+.+.
T Consensus 101 --~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi---~v~sg~I~Gl--------GEt~ed 167 (279)
T PRK08508 101 --SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL---GLCSGGIFGL--------GESWED 167 (279)
T ss_pred --CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC---eecceeEEec--------CCCHHH
Confidence 2445778889999988853221 234556667888999999 6666655541 357889
Q ss_pred HHHHHHHHHHCCCCEEEE------cccc---CcCCHHHHHHHHHHHHHHcCCceEEEeec--CCcchHHHHHHHHHHhcC
Q psy15244 822 YEDLAKQLVESGAQVLCL------KDMA---GLLKPTAAKLLIGSFREKYPNILIHVHTH--DMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i------~Dt~---G~l~P~~~~~lv~~lr~~~p~ipi~~H~H--nd~GlA~An~laAi~AGa 890 (1427)
.++.+..+.+.+.+.+-+ ..|- .-+.|.++..++...|-.+|+..|-+=.= ..+| ..-..++.|||
T Consensus 168 ~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~ 244 (279)
T PRK08508 168 RISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGA 244 (279)
T ss_pred HHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCC
Confidence 999999999999884432 2221 13678888888888887788766655331 1111 12356888998
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
+.+ -+..+=-..| .+.++=..+++..|+..
T Consensus 245 n~~--~~g~~lt~~g-~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 245 NAI--VIGDYLTTKG-EAPKKDIEKLKSLGFEI 274 (279)
T ss_pred cce--eecCcccCCC-CChHHHHHHHHHcCCCc
Confidence 874 3444423333 45555566777777653
No 401
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.94 E-value=21 Score=38.74 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga 834 (1427)
....++.+.+.|++.+.+.- +.++...+.+..... .+-+.+. .+. +....+...+.++.+.++|+
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g-----~~i~~~~~~~~~~~~---~v~~~v~------~~~-~~~~~~~~~~~a~~a~~~Ga 79 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP-----GYVRLAADALAGSDV---PVIVVVG------FPT-GLTTTEVKVAEVEEAIDLGA 79 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH-----HHHHHHHHHhCCCCC---eEEEEec------CCC-CCCcHHHHHHHHHHHHHcCC
Confidence 55668888899999988775 333333333221012 2222211 221 11347888899999999999
Q ss_pred CEEEEccccCcCC---HHHHHHHHHHHHHHc-CCceEEEee--cCCcchHHHH--HHHHHHhcCCEEEeccccCCCCCCC
Q psy15244 835 QVLCLKDMAGLLK---PTAAKLLIGSFREKY-PNILIHVHT--HDMAGTGVAT--TLACVKAGADIVDVAADSMSGICSQ 906 (1427)
Q Consensus 835 d~i~i~Dt~G~l~---P~~~~~lv~~lr~~~-p~ipi~~H~--Hnd~GlA~An--~laAi~AGad~VD~av~GmG~~tgn 906 (1427)
|.+.+.-..+... ++.+.+.++.+.+.. +++|+-+.. +.+....... +..+.+.|++.|..+.... +++
T Consensus 80 d~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~---~~~ 156 (201)
T cd00945 80 DEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG---GGG 156 (201)
T ss_pred CEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC---CCC
Confidence 9988765554433 577888888998884 367765433 2221222111 2234679999999887433 244
Q ss_pred CcHHHHHHHH
Q psy15244 907 PAMGTIVSCL 916 (1427)
Q Consensus 907 ~~lE~vv~~L 916 (1427)
..++.+....
T Consensus 157 ~~~~~~~~i~ 166 (201)
T cd00945 157 ATVEDVKLMK 166 (201)
T ss_pred CCHHHHHHHH
Confidence 4555544433
No 402
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=87.93 E-value=9.5 Score=42.63 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC-CceeeeecccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN-IPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~-~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+.++.+++++.+.+ .|+..+|+. +-.++..+.++.+++..++ ..+.. | .| +..+
T Consensus 20 ~~~~~~~~~~a~~~--gGi~~iEvt----------~~~~~~~~~i~~l~~~~~~~~~iGa---G--TV--------~~~~ 74 (206)
T PRK09140 20 TPDEALAHVGALIE--AGFRAIEIP----------LNSPDPFDSIAALVKALGDRALIGA---G--TV--------LSPE 74 (206)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEe----------CCCccHHHHHHHHHHHcCCCcEEeE---E--ec--------CCHH
Confidence 56889999999988 899999985 2345667789999988874 22211 1 11 1234
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.+.+.. +..+.+ .+++++..|. .+-.. .++++. +.++.++|+|.|
T Consensus 75 ~~~~a~~aGA~fivs--p~~~~~----v~~~~~~~~~---~~~~G-------------~~t~~E----~~~A~~~Gad~v 128 (206)
T PRK09140 75 QVDRLADAGGRLIVT--PNTDPE----VIRRAVALGM---VVMPG-------------VATPTE----AFAALRAGAQAL 128 (206)
T ss_pred HHHHHHHcCCCEEEC--CCCCHH----HHHHHHHCCC---cEEcc-------------cCCHHH----HHHHHHcCCCEE
Confidence 589999999998765 333333 3344556666 22111 355544 345667899999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.+--+ +.+.|. .++.+++.+| ++|+-.= -|....|.-.-+++|++.|=
T Consensus 129 k~Fpa-~~~G~~----~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 129 KLFPA-SQLGPA----GIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred EECCC-CCCCHH----HHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEE
Confidence 87322 223344 4566666665 5776442 37888999999999999874
No 403
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=87.91 E-value=6.8 Score=46.81 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeec----------cCCC---------CCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAG----------DLTN---------PNKKK 816 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~----------d~~~---------p~~~~ 816 (1427)
....+.++.+|+..+|-+-+..+.. ++.++ +.|. ..-..+.++| |+.- .....
T Consensus 45 ~~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~----~~g~---~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (342)
T cd01299 45 TRQARAALRAGFTTVRDAGGADYGL-LRDAI----DAGL---IPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVV 116 (342)
T ss_pred HHHHHHHHhCCCcEEEeCCCcchHH-HHHHH----HcCC---ccCCceeecchhhcccCCCCccccccccccccCCccee
Confidence 3457788889999988665544333 33333 3333 1111111111 1100 01113
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccC-----------cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAG-----------LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G-----------~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+++...+.++++.+.|++.|-+.=+-+ .+.++....+++..++. ++++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 4578888899999999999887664322 46788888888887765 78999999864 345578
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
+++|++.+.=+. .-.++.+..|+..|.
T Consensus 190 l~~G~~~i~H~~---------~~~~~~~~~l~~~g~ 216 (342)
T cd01299 190 IRAGVDTIEHGF---------LIDDETIELMKEKGI 216 (342)
T ss_pred HHcCCCEEeecC---------CCCHHHHHHHHHCCc
Confidence 889988664321 112456666766654
No 404
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.79 E-value=4.4 Score=49.69 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCc------cc-cccceEEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 55 KTMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSA------HR-TKVDQAFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 55 ~~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~------~~-~~aDe~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
...+||||.| .|.++..+++.+.+.|++++++..+...... .. ....-.+. ..+..|.+.+.+++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v-------~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-------FGDVTDADSLRKVL 130 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEE-------EeeCCCHHHHHHHH
Confidence 3467999999 5999999999999999999888654432110 00 00010111 12356778888888
Q ss_pred Hhc--CCCEEEeCC
Q psy15244 127 KNN--NVDAIHPGY 138 (1427)
Q Consensus 127 ~~~--~vDaI~pg~ 138 (1427)
+.. ++|.|+-..
T Consensus 131 ~~~~~~~D~Vi~~a 144 (390)
T PLN02657 131 FSEGDPVDVVVSCL 144 (390)
T ss_pred HHhCCCCcEEEECC
Confidence 765 699998543
No 405
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.77 E-value=4.3 Score=49.60 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
.+++.+.++++.+.+.|++.|++.|..-. ...+...++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 45566777888888888888888887763 34566666665543
No 406
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=87.76 E-value=50 Score=38.77 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=96.3
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH----HHHHhCCCCce
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA----ELRELIPNIPF 735 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~----~lr~~~p~~~~ 735 (1427)
.+|--+|=||.+. ++.+..++-|..+-+ .|.+.|++||.+|-..+-.--.+..|+|+. .|++.. ++++
T Consensus 22 NvTpDSFsdgg~~-----~~~~~a~~~a~~~~~--~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I 93 (282)
T PRK11613 22 NVTPDSFSDGGTH-----NSLIDAVKHANLMIN--AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI 93 (282)
T ss_pred cCCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE
Confidence 4566668888763 466778887777766 699999999876622221111223466654 233221 3333
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
+. ..|- -+.+++|.++|+++++=..++++- +|.. .+++.|. - ..++.+ -+.|...
T Consensus 94 SI----------DT~~----~~va~~AL~~GadiINDI~g~~d~-~~~~---~~a~~~~---~--vVlmh~--~g~p~~~ 148 (282)
T PRK11613 94 SV----------DTSK----PEVIRESAKAGAHIINDIRSLSEP-GALE---AAAETGL---P--VCLMHM--QGNPKTM 148 (282)
T ss_pred EE----------ECCC----HHHHHHHHHcCCCEEEECCCCCCH-HHHH---HHHHcCC---C--EEEEcC--CCCCCcc
Confidence 22 2232 334778888999998666666543 3322 2455555 1 223332 1233211
Q ss_pred ----CCC------HHHHHHHHHHHHHCCCC--EEEEccc-cCcCC-HHHHHHHHHHHHH--HcCCceE
Q psy15244 816 ----KYS------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLLK-PTAAKLLIGSFRE--KYPNILI 867 (1427)
Q Consensus 816 ----~~~------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l~-P~~~~~lv~~lr~--~~p~ipi 867 (1427)
.|+ .+++.+.++.+.++|+. .|.+ |- .|..+ +.+-.++++.+.. .+ +.|+
T Consensus 149 ~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~~l~~l-g~Pi 214 (282)
T PRK11613 149 QEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLAEFHHF-NLPL 214 (282)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHHHHHhC-CCCE
Confidence 111 36788888899999986 4433 54 24433 4566677766643 23 5664
No 407
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=87.74 E-value=1 Score=55.13 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=45.7
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.++.-..-.....+++. .+..|.++.+|+|.++.+++||.|++||+|+.|+
T Consensus 38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld 95 (385)
T PRK09578 38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRID 95 (385)
T ss_pred eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEEC
Confidence 444566666644444555677765 5789999999999999999999999999999986
No 408
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.74 E-value=2.6 Score=53.28 Aligned_cols=69 Identities=29% Similarity=0.397 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|++||.+ -.++....+..++++|||+|++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 78899999999998866444454 4678899999999999999887 335556778899999999999754
No 409
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=87.71 E-value=21 Score=42.68 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=104.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc--ChHHHHHHHHHhCCCCc-eeeeecccccccccCCCcc
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE--CPWERLAELRELIPNIP-FQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e--~p~erl~~lr~~~p~~~-~qml~Rg~n~vgy~~~~~n 753 (1427)
.++.++..++.+++... .|+..+-+.||--+ +.. +=++-++.+++ .+... +.+..|+. ...|.-
T Consensus 118 ~l~~~e~~~~i~~i~~~-~~I~~VilSGGDPl------~~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~-----v~~p~r 184 (321)
T TIGR03822 118 VLSPAELDAAFAYIADH-PEIWEVILTGGDPL------VLSPRRLGDIMARLAA-IDHVKIVRFHTRVP-----VADPAR 184 (321)
T ss_pred cCCHHHHHHHHHHHHhC-CCccEEEEeCCCcc------cCCHHHHHHHHHHHHh-CCCccEEEEeCCCc-----ccChhh
Confidence 36778899998888742 68988888887542 221 11233444544 34332 33333321 112334
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
+-.+.++...++|..+ .|....|+. +....+++.++++|. .+........ .. ..+.+.+.++.+.+
T Consensus 185 it~ell~~L~~~g~~v-~i~l~~~h~~el~~~~~~ai~~L~~~Gi---~v~~q~vLl~---gv---Nd~~~~l~~l~~~l 254 (321)
T TIGR03822 185 VTPALIAALKTSGKTV-YVALHANHARELTAEARAACARLIDAGI---PMVSQSVLLR---GV---NDDPETLAALMRAF 254 (321)
T ss_pred cCHHHHHHHHHcCCcE-EEEecCCChhhcCHHHHHHHHHHHHcCC---EEEEEeeEeC---CC---CCCHHHHHHHHHHH
Confidence 4567788888889653 455555544 456788889999998 4443222221 11 36788899999999
Q ss_pred HHCCCC--EEEEccccCc-----CCHHHHHHHHHHHHHHcCC
Q psy15244 830 VESGAQ--VLCLKDMAGL-----LKPTAAKLLIGSFREKYPN 864 (1427)
Q Consensus 830 ~~~Gad--~i~i~Dt~G~-----l~P~~~~~lv~~lr~~~p~ 864 (1427)
.++|+. .+...|.++. ..+.+..+++..+++.+++
T Consensus 255 ~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 255 VECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred HhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 999987 4566777732 5567899999999998864
No 410
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=87.62 E-value=58 Score=39.69 Aligned_cols=214 Identities=9% Similarity=0.046 Sum_probs=122.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhh-hhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHT-CLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~-~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
..++.+++++.++.+.+ .|+..+=+-||-+... .+.+ -.+.++.+++..|.+.+.. .| +
T Consensus 101 ~~Ls~eEI~~~a~~~~~--~Gv~~i~lvgGe~p~~~~~e~----l~eii~~Ik~~~p~i~Iei------------~~--l 160 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKK--SGFKEILLVTGESEKAAGVEY----IAEAIKLAREYFSSLAIEV------------QP--L 160 (366)
T ss_pred CcCCHHHHHHHHHHHHh--CCCCEEEEeeCCCCCCCCHHH----HHHHHHHHHHhCCcccccc------------cc--C
Confidence 45799999999999988 6998877654432210 0111 1234566666665444321 11 2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
-.+.++..+++|++.+.++.-.. +.+.-..+++.++++|+. .+...+.+. -+. +.
T Consensus 161 t~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~--~v~~g~i~G----l~e----~~ 230 (366)
T TIGR02351 161 NEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR--KIGIGALLG----LDD----WR 230 (366)
T ss_pred CHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC--eeceeEEEe----Cch----hH
Confidence 23447888899999998865553 334446688999999981 133333332 221 33
Q ss_pred HHHHHHHHHHHHCCC------CEEE---Ecc------ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 820 NYYEDLAKQLVESGA------QVLC---LKD------MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Ga------d~i~---i~D------t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
...++++..+..++. +.|. |.. ....++|..+.+++..+|-.+|+..|-+-+=-..-+. -.
T Consensus 231 ~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr----d~ 306 (366)
T TIGR02351 231 TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR----DN 306 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH----HH
Confidence 333444444333332 2322 222 2345778999999999998899888777654432221 01
Q ss_pred HHHhcCCEEEe----ccccCCCCCC---------CCcHHHHHHHHHhCCCCC
Q psy15244 885 CVKAGADIVDV----AADSMSGICS---------QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 885 Ai~AGad~VD~----av~GmG~~tg---------n~~lE~vv~~L~~~g~~t 923 (1427)
.+..|+..+.+ .++|+....| +-++++++.+|+..|+++
T Consensus 307 ~~~~~~~~~~a~~~~~~G~y~~~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~ 358 (366)
T TIGR02351 307 VIPLGITKMSAGSSTEPGGYSSEKKGLEQFEISDERSVAEVEEDLRSKGLQP 358 (366)
T ss_pred HHhhcceeeccCcccCCCCcCCCCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence 11233333221 2334433223 147788899998888775
No 411
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=87.57 E-value=17 Score=43.67 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccC-cCCHHHHHHHHHHHHHHcCCceEEEee---------cCCcchHHHHHH-H
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAG-LLKPTAAKLLIGSFREKYPNILIHVHT---------HDMAGTGVATTL-A 884 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G-~l~P~~~~~lv~~lr~~~p~ipi~~H~---------Hnd~GlA~An~l-a 884 (1427)
..+++.+++.++.+.+.|++.|+|.+-.- .+.++.+.++++.+++..|++. +|+ -...|+-....+ .
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~--~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIH--IHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcC--CCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 57899999999999999999999953211 2344556789999998875443 332 123455433344 3
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDY 964 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~ 964 (1427)
--+||++.++. .| .|.+-..+.+.-.....+.+...+..+...+ .|+++.. .-++|-+=-.+..-.|
T Consensus 149 Lk~aG~~~~~~----~g-------~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~-~Gi~v~~-~~iiGlgEt~ed~~~~ 215 (340)
T TIGR03699 149 LKEAGLDSIPG----GG-------AEILSDRVRKIISPKKISSEEWLEVMETAHK-LGLPTTA-TMMFGHVETLEDRIEH 215 (340)
T ss_pred HHHcCCCcCCC----Cc-------ccccCHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCCccc-eeEeeCCCCHHHHHHH
Confidence 44689997752 11 1111111111100111233333333333322 3443321 2255532111334444
Q ss_pred HHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHH-
Q psy15244 965 SSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVA- 1042 (1427)
Q Consensus 965 ~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg- 1042 (1427)
...+.+.......|. .-+-+. ..+|..+.+ .-.....+.++.++..|-.+.+++.++-+-...|
T Consensus 216 l~~l~~l~~~~~~~~--------~fIP~~f~p~~tpl~~------~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~~~~g~ 281 (340)
T TIGR03699 216 LERIRELQDKTGGFT--------AFIPWTFQPGNTELGK------KRPATSTEYLKVLAISRIFLDNIPNIQASWVTQGK 281 (340)
T ss_pred HHHHHHhchhhCCee--------EEEeecccCCCCcccC------CCCCCHHHHHHHHHHHHHcCCCCCcccCCccccCh
Confidence 444444433332221 001110 012322111 0123678899999999999998766666555566
Q ss_pred HHHHHHHH
Q psy15244 1043 DLAIFMTQ 1050 (1427)
Q Consensus 1043 ~~a~~~v~ 1050 (1427)
+++.+...
T Consensus 282 ~~~~~~l~ 289 (340)
T TIGR03699 282 EVGQLALH 289 (340)
T ss_pred HHHHHHHh
Confidence 44444343
No 412
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=87.52 E-value=2.3 Score=49.27 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++-..|+.+ ++.++++|+|.| |-+-.++| +.+++..+|+.| ++|+-.-+-| +..++.|+++|+|+|-+
T Consensus 80 k~Righ~~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~T 147 (293)
T PRK04180 80 KARIGHFVE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRT 147 (293)
T ss_pred eehhhHHHH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeec
Confidence 444555554 889999999999 88888999 679999999999 8887766655 67779999999999988
Q ss_pred c
Q psy15244 896 A 896 (1427)
Q Consensus 896 a 896 (1427)
+
T Consensus 148 t 148 (293)
T PRK04180 148 K 148 (293)
T ss_pred c
Confidence 7
No 413
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=87.51 E-value=0.62 Score=48.93 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-eeecCCCeEEEEEEecC
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-LIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-~i~Ap~~G~V~~i~v~~ 1412 (1427)
|..|..+.+.+.+|+.|++||.|+.+.+-|-|. .++||++|+|.-+.--+
T Consensus 86 ~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p 136 (150)
T PF09891_consen 86 PVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP 136 (150)
T ss_dssp EEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred EecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence 667888889999999999999999999999887 69999999998765433
No 414
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=87.48 E-value=4.6 Score=46.20 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCc
Q psy15244 718 CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 718 ~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~ 797 (1427)
-|++..+.|.+.+.+..+..++. |-+ .+-++...+.|++.+.|...- +.|+. .++++.+.|+
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~st----------pfd--~~s~d~l~~~~~~~~KIaS~d--l~n~~-lL~~~A~tgk--- 114 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFST----------PFD--EESVDFLEELGVPAYKIASGD--LTNLP-LLEYIAKTGK--- 114 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEE----------E-S--HHHHHHHHHHT-SEEEE-GGG--TT-HH-HHHHHHTT-S---
T ss_pred CCHHHHHHHHHHHHHcCCEEEEC----------CCC--HHHHHHHHHcCCCEEEecccc--ccCHH-HHHHHHHhCC---
Confidence 44555555555554444444442 222 122566667788888876542 22222 3455666787
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-EccccCcCCHHHHHH--HHHHHHHHcCCceEEEeecCC
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC-LKDMAGLLKPTAAKL--LIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~--lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
..|.-|| ..+++.+.+.++.+.+.|..-|+ +-=+.+.=+|.+-.. .+..||+.+ ++||++=-|..
T Consensus 115 ---PvIlSTG--------~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f-~~~vG~SDHt~ 182 (241)
T PF03102_consen 115 ---PVILSTG--------MSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERF-GVPVGYSDHTD 182 (241)
T ss_dssp ----EEEE-T--------T--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHS-TSEEEEEE-SS
T ss_pred ---cEEEECC--------CCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhc-CCCEEeCCCCC
Confidence 2333443 68999999999999777765444 444556666655444 489999999 59999999988
Q ss_pred cchHHHHHHHHHHhcCCEEE
Q psy15244 875 AGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD 894 (1427)
| ....++|+..||.+|.
T Consensus 183 -g--~~~~~~AvalGA~vIE 199 (241)
T PF03102_consen 183 -G--IEAPIAAVALGARVIE 199 (241)
T ss_dssp -S--SHHHHHHHHTT-SEEE
T ss_pred -C--cHHHHHHHHcCCeEEE
Confidence 4 4557899999999984
No 415
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.44 E-value=5.7 Score=44.57 Aligned_cols=68 Identities=31% Similarity=0.303 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.+.+...++++.+.+.|++.|-|. +-+| ...+.|+.+++++|++-|+..+=-|. ..+-.|++|||+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEE
Confidence 678999999999999999999986 5666 57788999999999999999887776 66789999999998
No 416
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.39 E-value=3.7 Score=47.66 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
++++.+.++++++.+.|++.|++.|+.-- .+.+...+..+++.
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 56666777888888888888888887763 45666666666543
No 417
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=87.38 E-value=1.1 Score=54.89 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=47.1
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.++....-+....+++-+ +..|.++.+|+|.++++++|+.|++||+|++|+
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld 93 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQID 93 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEEC
Confidence 4445667776555556667777654 778999999999999999999999999999986
No 418
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=87.33 E-value=1.6 Score=53.62 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=48.7
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|...+|.+++||.+ .. |..-..+|-+ .....|.||..|+|.++++
T Consensus 14 eg~i~~w~v~~Gd~V-----------~~-g~~l~~vEtd----------------------K~~~ei~a~~~G~v~~i~~ 59 (403)
T TIGR01347 14 EGTVAEWHKKVGDTV-----------KR-DENIVEIETD----------------------KVVLEVPSPADGVLQEILF 59 (403)
T ss_pred eEEEEEEEeCCcCEe-----------CC-CCEEEEEEEc----------------------ceeeEEecCCCEEEEEEEe
Confidence 577889999999987 22 3322222211 1346789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++|+.|+.|++|+.|+..
T Consensus 60 ~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 60 KEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCCEeCCCCEEEEEecC
Confidence 999999999999999864
No 419
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=87.26 E-value=18 Score=41.74 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=92.0
Q ss_pred CcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CCceeeeecc
Q psy15244 665 TFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NIPFQMILRG 741 (1427)
Q Consensus 665 TlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~~~qml~Rg 741 (1427)
.+.||.+ ..+.+..++.|..+-+ .|.+.|++++++|-..+-.--.++.|+|+..+-+.+. +.++..
T Consensus 13 sf~~~~~-----~~~~~~~~~~a~~~~~--~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSI---- 81 (258)
T cd00423 13 SFSDGGK-----FLSLDKALEHARRMVE--EGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISV---- 81 (258)
T ss_pred chhhccc-----cCCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEE----
Confidence 4556543 2567888888888877 7999999998876332211113355677655444432 333322
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC----CCC
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK----KKY 817 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~----~~~ 817 (1427)
..+ .-+.+++|.+.|.+++.=....++= ...++.+++.|. -+ .++...+ .|.. ..|
T Consensus 82 ------DT~----~~~v~~aaL~~g~~iINdis~~~~~---~~~~~l~~~~~~---~v--V~m~~~~--~~~~~~~~~~~ 141 (258)
T cd00423 82 ------DTF----NAEVAEAALKAGADIINDVSGGRGD---PEMAPLAAEYGA---PV--VLMHMDG--TPQTMQNNPYY 141 (258)
T ss_pred ------eCC----cHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCC---CE--EEECcCC--CCcccccCCCc
Confidence 112 2334778888998876655444311 344566777776 22 1222211 1100 001
Q ss_pred ------CHHHHHHHHHHHHHCCCC--EEEEccccCcCC---HHHHHHHHHHH---HHHcCCceE
Q psy15244 818 ------SLNYYEDLAKQLVESGAQ--VLCLKDMAGLLK---PTAAKLLIGSF---REKYPNILI 867 (1427)
Q Consensus 818 ------~~~~~~~~a~~l~~~Gad--~i~i~Dt~G~l~---P~~~~~lv~~l---r~~~p~ipi 867 (1427)
-.+++.+.++.+.++|+. .|.| |. |+.. +..-..+++.+ ++. |+.|+
T Consensus 142 ~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP-g~g~~k~~~~~~~~l~~i~~~~~~-~g~Pi 202 (258)
T cd00423 142 ADVVDEVVEFLEERVEAATEAGIPPEDIIL-DP-GIGFGKTEEHNLELLRRLDAFREL-PGLPL 202 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC-CCCccCCHHHHHHHHHHHHHHHhc-CCCcE
Confidence 157888889999999953 4443 53 3332 23333444444 433 56674
No 420
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.26 E-value=3.5 Score=48.86 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=52.8
Q ss_pred EEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
||||.| .|.++..+++.+.+.|++++++..+..........--+.+. .++.|.+.+.+..+ ++|+|+-.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~--------~Dl~d~~~l~~al~--g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVY--------GDLSLPETLPPSFK--GVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEE--------CCCCCHHHHHHHHC--CCCEEEEC
Confidence 899999 69999999999999999988886543221100000011111 23456666666554 58887754
Q ss_pred CCcccc--------c----HHHHHHHHHCCC
Q psy15244 138 YGFLSE--------R----EDFAKAVIGAGL 156 (1427)
Q Consensus 138 ~gflsE--------~----~~~a~~~e~~Gi 156 (1427)
.+.... | ..+.++|.+.|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gv 102 (317)
T CHL00194 72 STSRPSDLYNAKQIDWDGKLALIEAAKAAKI 102 (317)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHcCC
Confidence 332111 1 235667777776
No 421
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=87.08 E-value=19 Score=39.74 Aligned_cols=156 Identities=23% Similarity=0.269 Sum_probs=89.7
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
+-+-|-.-+...++-+...+|...|.--+|+- .++|+..++..++ .-. - .|- -.|. |+...+=-.
T Consensus 22 Qal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~-gv~dIkai~~~v~----vPI-----I-GIi-Krd~--~~s~v~ITp- 86 (229)
T COG3010 22 QALPGEPLDSPEIVAAMALAAEQGGAVGIRIE-GVEDIKAIRAVVD----VPI-----I-GII-KRDY--PDSPVRITP- 86 (229)
T ss_pred ecCCCCCCcchhHHHHHHHHHHhCCcceEeec-chhhHHHHHhhCC----CCe-----E-EEE-ecCC--CCCCceecc-
Confidence 33444444556777777888888999999986 4444443333222 211 1 111 1121 111111112
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHH-HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPT-AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~-~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
+++=+++|.++|+++|++ |-.=--.|. ...++++. .++|+.-+-..|-+ +.-.+.|.++|+|+|-+|++|.
T Consensus 87 tlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~~l~MAD~St-----~ee~l~a~~~G~D~IGTTLsGY 158 (229)
T COG3010 87 TLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPGQLAMADCST-----FEEGLNAHKLGFDIIGTTLSGY 158 (229)
T ss_pred cHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCCcEEEeccCC-----HHHHHHHHHcCCcEEecccccc
Confidence 344577888999999997 555567777 77778777 23444433333322 4566889999999999999998
Q ss_pred CCCCCCC--cHHHHHHHHHhCC
Q psy15244 901 SGICSQP--AMGTIVSCLENTD 920 (1427)
Q Consensus 901 G~~tgn~--~lE~vv~~L~~~g 920 (1427)
-+-+=+| +--+++..|...|
T Consensus 159 T~~~~~~~~pDf~lvk~l~~~~ 180 (229)
T COG3010 159 TGYTEKPTEPDFQLVKQLSDAG 180 (229)
T ss_pred cCCCCCCCCCcHHHHHHHHhCC
Confidence 6633233 2223444444443
No 422
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.92 E-value=2.2 Score=48.41 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHH--HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTA--AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~--~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.|+..+.+-++++.+.|+|.+-+==|=|...|.- -.+.+++||+..|++++.+|.|-+..... .-.+.++|||+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~--i~~~~~~Gad~i- 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKW--VDDFAKAGASQF- 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHH--HHHHHHcCCCEE-
Confidence 5667788899999999999755433448888863 34688999988889999999993332222 256778999998
Q ss_pred eccccCCCCCCCCc-HHHHHHHHHhCCCCCCCCh
Q psy15244 895 VAADSMSGICSQPA-MGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 895 ~av~GmG~~tgn~~-lE~vv~~L~~~g~~tgidl 927 (1427)
|+-.-+ ... +...+..++..|...|+.+
T Consensus 93 -tvH~ea----~~~~~~~~l~~ik~~G~~~gval 121 (228)
T PTZ00170 93 -TFHIEA----TEDDPKAVARKIREAGMKVGVAI 121 (228)
T ss_pred -EEeccC----CchHHHHHHHHHHHCCCeEEEEE
Confidence 443322 123 5677888887776665544
No 423
>PRK13753 dihydropteroate synthase; Provisional
Probab=86.91 E-value=13 Score=43.40 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=105.2
Q ss_pred EEEEEEEeeccCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH------HHHH---HHHHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP------TAAK---LLIGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~-~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P------~~~~---~lv~~lr~~~p~ipi 867 (1427)
++.+.+..|-|=+ -|.++ .+.+..++-++++.+.|||+|-|.=-..--.+ +++. ..|++|++. +++|
T Consensus 3 ~iMGIlNvTPDSF-sDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~I 79 (279)
T PRK13753 3 TVFGILNLTEDSF-FDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRV 79 (279)
T ss_pred eEEEEEeCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcE
Confidence 3445555554411 13455 48899999999999999999977532221111 2455 566666654 4677
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH------h-CCCC------CCCCh-hhHHHH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE------N-TDKR------CGIDL-HDVCDY 933 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~------~-~g~~------tgidl-~~L~~l 933 (1427)
.+ ||+-- ..+.+|+++||++|+-- +|+ . .|.+..+++... + .|.. ...+. .-+.++
T Consensus 80 SI---DT~~~--~va~~al~aGadiINDV-sg~---~-d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev 149 (279)
T PRK13753 80 SI---DSFQP--ETQRYALKRGVGYLNDI-QGF---P-DPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEI 149 (279)
T ss_pred EE---ECCCH--HHHHHHHHcCCCEEEeC-CCC---C-chHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHH
Confidence 77 44443 34468999999997643 332 3 566666555431 1 1110 11111 123445
Q ss_pred HHHHH----HHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcC-CCCCCCCCcCcccEEEecCCC
Q psy15244 934 SSYWR----KVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYA-PFECTDLKAASSEAYLYEIPG 997 (1427)
Q Consensus 934 ~~~v~----~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~-~f~~~~~~g~~~~v~~~~~pG 997 (1427)
..+++ .....-++.++ |-+| .+..+...++-.+.+.-..+. .|..|-+.|.++.-+++++-|
T Consensus 150 ~~~l~~~i~~~~~~Gi~~~~IilDPGiG--F~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~ 220 (279)
T PRK13753 150 VRFFEARVSALRRSGVAADRLILDPGMG--FFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVG 220 (279)
T ss_pred HHHHHHHHHHHHHcCCChhhEEEeCCCC--CCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcC
Confidence 55443 45555566666 5445 222334455656666655565 366677788888877776654
No 424
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=86.81 E-value=20 Score=42.33 Aligned_cols=129 Identities=16% Similarity=0.271 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..+++.+.. .|+..|-+.||-- +++.+-.+-++.+++. +. .+.+..-|. ..
T Consensus 39 ~ls~eei~~~i~~~~~--~gi~~I~~tGGEP------ll~~~l~~iv~~l~~~--g~~~v~i~TNG~-----------ll 97 (302)
T TIGR02668 39 ELSPEEIERIVRVASE--FGVRKVKITGGEP------LLRKDLIEIIRRIKDY--GIKDVSMTTNGI-----------LL 97 (302)
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEECccc------ccccCHHHHHHHHHhC--CCceEEEEcCch-----------HH
Confidence 4889999999988877 6999988877753 4555555555666553 22 344433221 12
Q ss_pred HHHHHHHHhcCCCEEEEe-ccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVF-DPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif-~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...+.|++.+.|. ++++ .++.+...++.++++|.. .+...+... + ..+.+.+.
T Consensus 98 ~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~--~v~i~~v~~-----~---g~n~~ei~ 167 (302)
T TIGR02668 98 EKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLT--PVKLNMVVL-----K---GINDNEIP 167 (302)
T ss_pred HHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCC--cEEEEEEEe-----C---CCCHHHHH
Confidence 345667778999988874 4443 245666777888888761 133322222 1 15677788
Q ss_pred HHHHHHHHCCCCE
Q psy15244 824 DLAKQLVESGAQV 836 (1427)
Q Consensus 824 ~~a~~l~~~Gad~ 836 (1427)
++++.+.+.|++.
T Consensus 168 ~~~~~~~~~g~~~ 180 (302)
T TIGR02668 168 DMVEFAAEGGAIL 180 (302)
T ss_pred HHHHHHHhcCCEE
Confidence 8888888888874
No 425
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.78 E-value=11 Score=44.10 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~ 823 (1427)
.+.|.+|+++|.+.+-+=-|.-++ +.-++.++.|+..|. .+|+-|-..+ +.++. ..++++...
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv---~VEaElG~vg--g~e~~~~~~~~~~~~T~peea~ 161 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDV---SVEAELGRLG--GQEDDLQVDEADALYTDPAQAR 161 (284)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccc--CcccCcccccccccCCCHHHHH
Confidence 356999999999887554444433 345678889999998 7887766554 12221 134666666
Q ss_pred HHHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 824 DLAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++++ +.|+|.+.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|+.-.....|++.|+.-|+...
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 162 EFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV-NIPLVLHG--ASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred HHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh-CCCeEEec--CCCCCHHHHHHHHHcCCeEEEeCc
Confidence 6555 56999776642 22332 3555567888899888 89987765 568888999999999999987753
No 426
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=86.76 E-value=21 Score=43.39 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+.+.++.+|+.+.+ .|+..+=. |-+-|.- +.| ..-+++.++.|++......+..+.. +-+...
T Consensus 130 ~~~~~~~~A~~lk~--~g~~~~r~~~~kpRtsp--~~f-~g~~~e~l~~L~~~~~~~Gl~~~t~----------v~d~~~ 194 (360)
T PRK12595 130 SYEQVEAVAKALKA--KGLKLLRGGAFKPRTSP--YDF-QGLGVEGLKILKQVADEYGLAVISE----------IVNPAD 194 (360)
T ss_pred CHHHHHHHHHHHHH--cCCcEEEccccCCCCCC--ccc-cCCCHHHHHHHHHHHHHcCCCEEEe----------eCCHHH
Confidence 56889999999988 67655432 1111111 112 2234677777777665554444432 223222
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC-CCHHHHHHHHHHHHHCCCC
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~-~~~~~~~~~a~~l~~~Gad 835 (1427)
++.+.+. +|++.|-... +.|. ..++++.+.|+ -+ +--+| - .+++.+...++.+.+.|.+
T Consensus 195 --~~~l~~~-vd~lkI~s~~--~~n~-~LL~~~a~~gk---PV---ilk~G--------~~~t~~e~~~Ave~i~~~Gn~ 254 (360)
T PRK12595 195 --VEVALDY-VDVIQIGARN--MQNF-ELLKAAGRVNK---PV---LLKRG--------LSATIEEFIYAAEYIMSQGNG 254 (360)
T ss_pred --HHHHHHh-CCeEEECccc--ccCH-HHHHHHHccCC---cE---EEeCC--------CCCCHHHHHHHHHHHHHCCCC
Confidence 7777777 8888775543 3332 34555666677 22 22222 3 6899999999999999998
Q ss_pred EEEEcc--ccCcCCH--HH-HHHHHHHHHHHcCCceEEE-eecCCcc---hHHHHHHHHHHhcCC--EEEeccccCCCCC
Q psy15244 836 VLCLKD--MAGLLKP--TA-AKLLIGSFREKYPNILIHV-HTHDMAG---TGVATTLACVKAGAD--IVDVAADSMSGIC 904 (1427)
Q Consensus 836 ~i~i~D--t~G~l~P--~~-~~~lv~~lr~~~p~ipi~~-H~Hnd~G---lA~An~laAi~AGad--~VD~av~GmG~~t 904 (1427)
.|.|+. +...-+| .. =-.-+..||+.+ ++||++ =.|- .| +....+++|+.+||| +|+.=.+
T Consensus 255 ~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~d------ 326 (360)
T PRK12595 255 QIILCERGIRTYEKATRNTLDISAVPILKQET-HLPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHPD------ 326 (360)
T ss_pred CEEEECCccCCCCCCCCCCcCHHHHHHHHHHh-CCCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecCC------
Confidence 889987 1111111 11 122366788887 899999 4554 55 667789999999997 6665542
Q ss_pred CCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHH
Q psy15244 905 SQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKV 940 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~ 940 (1427)
|.. ........++++.|.++.+.+.++
T Consensus 327 --p~~-------a~~D~~~sl~p~el~~l~~~i~~~ 353 (360)
T PRK12595 327 --PAV-------ALSDSAQQMDIPEFDRFLDELKPL 353 (360)
T ss_pred --CCC-------CCCchhhhCCHHHHHHHHHHHHHH
Confidence 221 111222456776666666655544
No 427
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.75 E-value=6.4 Score=46.31 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE----------ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCL----------KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i----------~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
.+.+.+.+.++.+.++|+|.|-| .|..| -.|..+.++++++|+.+ ++||.+-.--+..-...-+.++.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 176 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAE 176 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHH
Confidence 44666777777777777776655 12222 57899999999999998 88988876544333344455678
Q ss_pred HhcCCEEEe
Q psy15244 887 KAGADIVDV 895 (1427)
Q Consensus 887 ~AGad~VD~ 895 (1427)
++|||.|+.
T Consensus 177 ~~G~d~i~~ 185 (296)
T cd04740 177 EAGADGLTL 185 (296)
T ss_pred HcCCCEEEE
Confidence 899998855
No 428
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=86.56 E-value=0.56 Score=48.47 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=0.0
Q ss_pred ceecCCCeEEEEEE-ecCCCEEec--CCEEEEEEcCCceeeeecCCCeEEE-----------------------------
Q psy15244 1359 EIGAPMPGNIIEVK-VKVGQQVKK--NDVLIVMSVMKTETLIHASADGVVK----------------------------- 1406 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~-V~~Gd~V~~--G~~l~~ieamKme~~i~Ap~~G~V~----------------------------- 1406 (1427)
.|.||+.|+++.+. |.+.---++ |+-+++.-+-. .|.||++|+|.
T Consensus 4 ~i~aPv~G~vi~l~~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~ 80 (132)
T PF00358_consen 4 TIYAPVSGKVIPLEEVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVK 80 (132)
T ss_dssp EEE-SSSEEEEEGGGSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGG
T ss_pred EEEeeCCcEEEEhhhCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhh
Q ss_pred ------EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 ------EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ------~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+.+|++||.|.+||+|+++.
T Consensus 81 L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 81 LNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp GTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred cCCcceEEEEeCCCEEECCCEEEEEc
No 429
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=86.44 E-value=33 Score=39.77 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=110.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH----HHHHhCCCCcee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA----ELRELIPNIPFQ 736 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~----~lr~~~p~~~~q 736 (1427)
+|--+|=||.+ .++.++.++.|..+-+ .|.+.|++|+.+|-..+-.--.+..|+|+. .+++.. +.++.
T Consensus 9 ~tpdSF~dg~~-----~~~~~~~~~~a~~~~~--~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS 80 (257)
T cd00739 9 VTPDSFSDGGR-----FLSLDKAVAHAEKMIA--EGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS 80 (257)
T ss_pred CCCCCCCCCCC-----CCCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE
Confidence 44445667764 3677889999988877 799999998755511110011233466653 333322 34332
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC-
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK- 815 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~- 815 (1427)
. ..+ .-+.+++|.+.|.+++.=....++- ...++.+++.|. -+. ++... +.|...
T Consensus 81 I----------DT~----~~~v~e~al~~G~~iINdisg~~~~---~~~~~l~~~~~~---~vV--~m~~~--g~p~~~~ 136 (257)
T cd00739 81 V----------DTF----RAEVARAALEAGADIINDVSGGSDD---PAMLEVAAEYGA---PLV--LMHMR--GTPKTMQ 136 (257)
T ss_pred E----------eCC----CHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCC---CEE--EECCC--CCCcccc
Confidence 2 112 2334778888899987744443311 344556667776 222 12221 233110
Q ss_pred ---CC------CHHHHHHHHHHHHHCCCC--EEEEcccc-CcCC-HHHHHHHHHHHHH--HcCCceE--EE---------
Q psy15244 816 ---KY------SLNYYEDLAKQLVESGAQ--VLCLKDMA-GLLK-PTAAKLLIGSFRE--KYPNILI--HV--------- 869 (1427)
Q Consensus 816 ---~~------~~~~~~~~a~~l~~~Gad--~i~i~Dt~-G~l~-P~~~~~lv~~lr~--~~p~ipi--~~--------- 869 (1427)
.| -.+++.+.++.+.++|+. .|.+ |-. |..+ +.+-.++++.++. ++ +.|+ ++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~-~~pil~G~SrkSfig~~ 214 (257)
T cd00739 137 ENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQL-GLPVLVGASRKSFIGAL 214 (257)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecccHHHHHh
Confidence 01 235677777888899985 5443 542 4332 4455555555542 23 4553 22
Q ss_pred ---eecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 870 ---HTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 870 ---H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..++..+..++.+..|++.||+++=+
T Consensus 215 ~~~~~~~r~~~t~~~~~~~~~~Ga~iiRv 243 (257)
T cd00739 215 LGREPKDRDWGTLALSALAAANGADIVRV 243 (257)
T ss_pred cCCCccccchhHHHHHHHHHHcCCCEEEe
Confidence 23455566667777788889888743
No 430
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=86.43 E-value=2.6 Score=46.75 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.++.+...++++.+ +-|++.|-+ +.-+.+|. ..+.++.||+.+|+..+ ++|++ |-|. -..-+++++|||+|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~-g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNE-GIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHh-CHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEE
Confidence 47889999999999 778887665 32344444 46789999998875554 55555 3332 24577899999998
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
- +.+.. ++..+++++...+..|...++++
T Consensus 81 ~--vh~~~---~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 81 T--VLGVA---DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred E--EeccC---CHHHHHHHHHHHHHcCCEEEEEe
Confidence 4 33332 22346788888888887766543
No 431
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=86.42 E-value=17 Score=40.56 Aligned_cols=173 Identities=21% Similarity=0.182 Sum_probs=115.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
..+.++.+.+++.+.+ .++.||+|-+-. ...=.+.++.||+..|+..+-.=+.-. |.=.
T Consensus 12 ~~~l~~Ai~~a~~v~~---~~diiEvGTpLi--------k~eG~~aV~~lr~~~pd~~IvAD~Kt~----------D~G~ 70 (217)
T COG0269 12 LLDLEEAIEIAEEVAD---YVDIIEVGTPLI--------KAEGMRAVRALRELFPDKIIVADLKTA----------DAGA 70 (217)
T ss_pred ccCHHHHHHHHHHhhh---cceEEEeCcHHH--------HHhhHHHHHHHHHHCCCCeEEeeeeec----------chhH
Confidence 3677888999999887 499999985421 111236688999999987754433211 1223
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
-.++.|.++|.|++-|.. +.+...++.+++.+++.|+ .+..-+ .+ ..| ..+.++.+.++|+|.
T Consensus 71 ~e~~ma~~aGAd~~tV~g-~A~~~TI~~~i~~A~~~~~---~v~iDl--~~--------~~~---~~~~~~~l~~~gvd~ 133 (217)
T COG0269 71 IEARMAFEAGADWVTVLG-AADDATIKKAIKVAKEYGK---EVQIDL--IG--------VWD---PEQRAKWLKELGVDQ 133 (217)
T ss_pred HHHHHHHHcCCCEEEEEe-cCCHHHHHHHHHHHHHcCC---eEEEEe--ec--------CCC---HHHHHHHHHHhCCCE
Confidence 458899999999988765 4578889999999999998 655432 21 122 335667777799998
Q ss_pred EEEc-----cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 837 LCLK-----DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 837 i~i~-----Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+= =++|.--+..--..++.+.+. +..+.+ +-|...-+.-.....|+++|
T Consensus 134 ~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 134 VILHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred EEEEecccHhhcCCCccHHHHHHHHHhhcc--CceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 7762 234544333333333333322 245544 45888899999999999887
No 432
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.32 E-value=3 Score=56.68 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcC-CE------------EEEEec-CCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMG-IK------------SVGIYS-EQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elG-i~------------~vav~s-~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
..++||||+|.|-++..+++.+.+.+ ++ .++|.+ +... ...+++..-.+ ....-++.|.+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~---a~~la~~~~~~---~~v~lDv~D~e 640 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD---AKETVEGIENA---EAVQLDVSDSE 640 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH---HHHHHHhcCCC---ceEEeecCCHH
Confidence 34789999999999999999998753 33 233322 2211 11122211000 00112367788
Q ss_pred HHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH-
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK- 199 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee- 199 (1427)
.+.++++. +|+|+....+ .-+..++.+|.++|..++--+...- +-..+.+.++++|+....+. +.--..+.
T Consensus 641 ~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~----e~~~L~e~Ak~AGV~~m~e~-GlDPGid~~ 712 (1042)
T PLN02819 641 SLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSE----EMSALDSKAKEAGITILCEM-GLDPGIDHM 712 (1042)
T ss_pred HHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHH----HHHHHHHHHHHcCCEEEECC-ccCHHHHHH
Confidence 88887775 8999877443 2457899999999999875542211 22456788899999987765 22223344
Q ss_pred -HHHHHHhc----CCcEEEeecCCC--------CCcCeEEecCHHHHHHHH
Q psy15244 200 -VKEFCDEV----EFPVILKAAFGG--------GGRGMRMVANKDAIEENF 237 (1427)
Q Consensus 200 -a~~~a~~i----GyPvVVKP~~Gg--------GGrGV~iV~s~eeL~~a~ 237 (1427)
+.+.+++. |-...++...|| .--+-.+-.|++.+..++
T Consensus 713 lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 713 MAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred HHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence 44455544 666666666655 223444556666655544
No 433
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=86.24 E-value=2 Score=55.59 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
-+.|+-.+.+|++||+|++||+|+...- .| +.+.|.-.-......+....+..++.||.++.+
T Consensus 540 ~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 540 ELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred ccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 4667777899999999999999998753 22 344444333344445556667788999987764
No 434
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.22 E-value=6.7 Score=45.23 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCccEEeccCCCchhhhhhcccc--ChH----HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 685 KVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE--CPW----ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 685 ~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e--~p~----erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.-|+.+++ +|++.|=++.+ .--+.+.+-+- -.+ ...+.+++..+. -+++--...-+|.+-++++++..
T Consensus 23 ~sA~l~e~--aG~d~i~vGds-~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~---p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 23 PTAKLADE--AGVDVILVGDS-LGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPR---ALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred HHHHHHHH--cCCCEEEECHH-HHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCC---CeEEEeCCCCcccCCHHHHHHHH
Confidence 45666777 79999854322 11112222111 112 223334443332 22221111234666677777766
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEE-------eeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATIC-------YAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~-------~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
++...++|++.+.|=+. ..+...|+++.++|. -+.+.|- +.+++.-..++....+.+++-++.+.+
T Consensus 97 ~r~~~~aGa~aVkiEd~----~~~~~~I~al~~agi---pV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 97 ARLMKEAGADAVKLEGG----AEVAETIRALVDAGI---PVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHHHHHhCCeEEEEcCc----HHHHHHHHHHHHcCC---CeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 77777799999999887 356677888888886 2221111 111111111112226788899999999
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
+||+.|.+- +.|. ++.+.+.+++ ++|
T Consensus 170 AGA~~i~lE-----~v~~---~~~~~i~~~v-~iP 195 (254)
T cd06557 170 AGAFALVLE-----CVPA---ELAKEITEAL-SIP 195 (254)
T ss_pred CCCCEEEEc-----CCCH---HHHHHHHHhC-CCC
Confidence 999999986 2243 3666666776 466
No 435
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=86.10 E-value=0.83 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=31.4
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.++.+|+|.+++|++||.|++||+|+.|+
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld 80 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRID 80 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEEC
Confidence 678999999999999999999999999999986
No 436
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=86.10 E-value=17 Score=42.70 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
+.+.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. .-++++...+++
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv---~VEaElG~igg--~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV---SVEAELGTVGG--QEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccCC--ccCCcccccccCCCHHHHHHHH
Confidence 45889999999887655444443 455788999999999 88888776642 2221 124676666655
Q ss_pred HHHHHCCCCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .|+|.+.++ -.=|.- .|.--.++++.+++.+ ++||.+|. .+|+.-.....|+..|+.-|+...
T Consensus 166 ~~---TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~-~iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 166 EA---TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT-GVPLVLHG--GTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred HH---hCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeCh
Confidence 44 599977763 122221 3555567888899988 89987765 578888999999999999997653
No 437
>PRK09234 fbiC FO synthase; Reviewed
Probab=86.08 E-value=16 Score=49.12 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc---CCHHHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL---LKPTAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLAC 885 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~laA 885 (1427)
..+++.+++.++++.+.|+..|+|. .|. +....+.++++++|+++|++.||. |.=..+|+.+.-++..
T Consensus 556 ~Ls~eeI~~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~ 633 (843)
T PRK09234 556 TLSLDEVADRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTA 633 (843)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHH
Confidence 4689999999999999999999998 353 233567788999999987554431 2235678888888755
Q ss_pred H-HhcCCEEEe
Q psy15244 886 V-KAGADIVDV 895 (1427)
Q Consensus 886 i-~AGad~VD~ 895 (1427)
+ +||++.+..
T Consensus 634 LkeAGLds~pg 644 (843)
T PRK09234 634 LREAGLDTIPG 644 (843)
T ss_pred HHHhCcCccCC
Confidence 5 689988863
No 438
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=86.05 E-value=38 Score=38.69 Aligned_cols=199 Identities=12% Similarity=0.024 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccc--c---ccCCCc----
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLV--G---YSNYSP---- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~v--g---y~~~~~---- 752 (1427)
+..++.+.+.+ .|++.||+|.+. +..++.++.+.+. .+..+.++.-..+.. + +...|+
T Consensus 15 ~l~e~~~~~~e--~G~~~vEl~~~~----------~~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T TIGR03234 15 PFLERFAAAAQ--AGFTGVEYLFPY----------DWDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEE 81 (254)
T ss_pred CHHHHHHHHHH--cCCCEEEecCCc----------cCCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHH
Confidence 34455666667 799999998531 1123444433321 233333332111100 0 001122
Q ss_pred --chHHHHHHHHHhcCCCEEEEeccCC-----hH-------HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 --AEVGAFCRLASQAGIDIFRVFDPLN-----SV-------PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 --nvv~~~v~~a~~~Gid~~rif~~~n-----d~-------~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
+-.+..++.|.+.|...+++..... .- +.|+..++.|++.|. .+ ++.....+..|...-.+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi---~l--~lE~~~~~~~~~~~l~t 156 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL---TL--LIEPINSFDMPGFFLTT 156 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---EE--EEEECCcccCCCChhcC
Confidence 2344577788888999888764422 11 256777778888887 32 22211111122111245
Q ss_pred HHHHHHHHHHHHHCCCCEE-EEccccCcCCH-HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 819 LNYYEDLAKQLVESGAQVL-CLKDMAGLLKP-TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l~P-~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+...++++++ +-+.+ ..-|+.-...- ....++++.+. +--.|+|..|+.|.
T Consensus 157 ~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~~----~~i~~vHi~D~~~~------------------- 210 (254)
T TIGR03234 157 TEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAYA----AHIGHVQIADNPGR------------------- 210 (254)
T ss_pred HHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHhh----ccEeEEEeCCCCCC-------------------
Confidence 56666655554 33333 33465433211 11223333332 34468888875321
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
... +.|.-+...++..|+..|++--+.+
T Consensus 211 -~~~--G~G~id~~~il~~L~~~gy~g~~~~ 238 (254)
T TIGR03234 211 -HEP--GTGEINYRFLFAVLDRLGYDGWVGL 238 (254)
T ss_pred -CCC--CCCccCHHHHHHHHHHCCCCceEEE
Confidence 012 3578899999999999887754444
No 439
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=86.00 E-value=77 Score=37.93 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=118.8
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcc----c----cChHHHHHHHHHhCC-CCceeeeecccccc
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFL----K----ECPWERLAELRELIP-NIPFQMILRGNSLV 745 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl----~----e~p~erl~~lr~~~p-~~~~qml~Rg~n~v 745 (1427)
+..++.+++++.++.+.+ .|+..+-+-+|-..+..+..+ . ..+.+.+..+.+.+. .+.+.. .
T Consensus 32 ~~~l~~eeI~~~a~~~~~--~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~~---~---- 102 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAA--AGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLLP---H---- 102 (322)
T ss_pred cccCCHHHHHHHHHHHHH--CCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCcc---c----
Confidence 357899999999999888 699988777665433321110 0 012233322222221 111100 0
Q ss_pred cccCCCcchHHHHHHHHHhcCCCEEEEe----------------ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccC
Q psy15244 746 GYSNYSPAEVGAFCRLASQAGIDIFRVF----------------DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDL 809 (1427)
Q Consensus 746 gy~~~~~nvv~~~v~~a~~~Gid~~rif----------------~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~ 809 (1427)
-.+..+-.+.++..+++|++. .+. .+-.+...-...++.+++.|+ .+..++.|. +
T Consensus 103 ---~~~g~lt~e~l~~Lk~aG~~~-~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi---~~~s~~i~G--~ 173 (322)
T TIGR03550 103 ---TNPGVMSRDELARLKPVNASM-GLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKI---PFTTGILIG--I 173 (322)
T ss_pred ---cCCCCCCHHHHHHHHhhCCCC-CcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCC---CccceeeEe--C
Confidence 011222344466666666442 111 111112344677889999999 666666654 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-----CCEEEE------cccc----CcCCHHHHHHHHHHHHHHcC-CceEEEeecC
Q psy15244 810 TNPNKKKYSLNYYEDLAKQLVESG-----AQVLCL------KDMA----GLLKPTAAKLLIGSFREKYP-NILIHVHTHD 873 (1427)
Q Consensus 810 ~~p~~~~~~~~~~~~~a~~l~~~G-----ad~i~i------~Dt~----G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hn 873 (1427)
.-+.+..++.+..+.+.+ ++.+.+ +.|- ..+.+.+...++...|=.+| ...|-.-.
T Consensus 174 ------gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~-- 245 (322)
T TIGR03550 174 ------GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP-- 245 (322)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--
Confidence 135555555555544432 543221 2342 23567777777777776664 33333322
Q ss_pred CcchHHHHHHHHHHhcCCEEEeccc--cCCCC-CCC-CcHHHHHHHHHhCCCCC
Q psy15244 874 MAGTGVATTLACVKAGADIVDVAAD--SMSGI-CSQ-PAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~av~--GmG~~-tgn-~~lE~vv~~L~~~g~~t 923 (1427)
.+|.- ....|+.+||+-+++|+. +-.+. .+. .+.++++.+++..|+.+
T Consensus 246 ~l~~~--~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~p 297 (322)
T TIGR03550 246 NLNRE--DYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTL 297 (322)
T ss_pred ccChH--HHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcCCCc
Confidence 33311 357789999999999954 32221 222 47889999998877654
No 440
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=85.81 E-value=20 Score=41.58 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc------ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE------CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e------~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
--.-|..+++ +|++.|=++... --+.+.+-+. +-....+.+++..++.. +.--...-+|.. ++..++
T Consensus 24 D~~sA~i~~~--aG~d~ilvGdSl-gm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~---vv~DmPf~sy~~-~e~a~~ 96 (263)
T TIGR00222 24 DYSFAKLFAD--AGVDVILVGDSL-GMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCL---IVTDLPFMSYAT-PEQALK 96 (263)
T ss_pred CHHHHHHHHH--cCCCEEEECccH-hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCce---EEeCCCcCCCCC-HHHHHH
Confidence 3456777888 799998775321 1122222111 11223345555545433 222223346764 666666
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEE-------EEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEAT-------ICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~-------i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.-.+...+.|++.+.|=+. ..+...++.+.+.|. -|.+. ....++|.-..++....+.+++-++++
T Consensus 97 na~rl~~eaGa~aVkiEgg----~~~~~~i~~l~~~gI---pV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~ 169 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG----EWLVETVQMLTERGV---PVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALAL 169 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc----HhHHHHHHHHHHCCC---CEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHH
Confidence 5555555699999999987 334556688888888 33311 111122222222223456888999999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
+++||+.|.+- +.|. ++.+.+.+++ ++|
T Consensus 170 e~AGA~~ivlE-----~vp~---~~a~~It~~l-~iP 197 (263)
T TIGR00222 170 EEAGAQLLVLE-----CVPV---ELAAKITEAL-AIP 197 (263)
T ss_pred HHcCCCEEEEc-----CCcH---HHHHHHHHhC-CCC
Confidence 99999999986 3442 4555666666 466
No 441
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=85.74 E-value=0.91 Score=55.66 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=31.6
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.++++|+|.+++|++||.|++||+|++|+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD 93 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLD 93 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEEC
Confidence 778999999999999999999999999999986
No 442
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=85.72 E-value=14 Score=44.30 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=109.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccE-EeccCCCchhhhhhccccChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYS-LEMWGGAVSHTCLKFLKECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~-iE~~ggatfd~~~rfl~e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
+..+.+..|.++-.+ .+-.. |++..+ .++|+.-..+ ..++.+.+..+.+|+.+.+ .+..+
T Consensus 24 ~n~e~~~aii~AAEe--~~sPvIlq~s~~-----~~~~~g~~~~~~~~~~~ae~~~~VPValHL--------DHg~~--- 85 (347)
T TIGR01521 24 NNMEQMRAIMEAADK--TDSPVILQASRG-----ARSYAGAPFLRHLILAAIEEYPHIPVVMHQ--------DHGNS--- 85 (347)
T ss_pred CCHHHHHHHHHHHHH--hCCCEEEECCcc-----hhhhCCHHHHHHHHHHHHHhCCCCcEEEEC--------CCCCC---
Confidence 344555555555555 34433 444332 2334332222 2334455555556666543 22222
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----CC------
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----PN------ 813 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p~------ 813 (1427)
.+.|.+|+++|.+.+-+=.|.- +++.-++.+++|+..|. .||+-|-..+..-. .+
T Consensus 86 ~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv---sVEaELG~igg~e~~~~g~~d~~~~~~ 162 (347)
T TIGR01521 86 PATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGA---SVEGELGCLGSLETGMGEAEDGHGFEG 162 (347)
T ss_pred HHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeecccccccccccccCccccc
Confidence 2468999999998876554432 34455678899999999 78887766531100 01
Q ss_pred -----CCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcCC----HH---HHHHHHHHHHHHcCCceEEEeecCCcc---
Q psy15244 814 -----KKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLLK----PT---AAKLLIGSFREKYPNILIHVHTHDMAG--- 876 (1427)
Q Consensus 814 -----~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l~----P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~G--- 876 (1427)
...++++...++++ +.|+|.+.++ =.=|.-+ |. --.++++.++++++++||.+|.=....
T Consensus 163 ~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 163 VLDHSQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEW 239 (347)
T ss_pred ccchhhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHh
Confidence 11345555555444 4588876654 2334432 42 335567889888867998888654322
Q ss_pred ----------------hHHHHHHHHHHhcCCEEEec
Q psy15244 877 ----------------TGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 877 ----------------lA~An~laAi~AGad~VD~a 896 (1427)
.-......|++.|+.-|+..
T Consensus 240 ~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 240 LDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred hHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeC
Confidence 22567777777777777654
No 443
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=85.66 E-value=18 Score=44.02 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHH-HHHHHHHHhcCCEE
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGV-ATTLACVKAGADIV 893 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~-An~laAi~AGad~V 893 (1427)
-+..+.-.+-++++.+.|.+.+.|.-.+..-......++|..++..+| +.|.++ +|.|. .+.+.++..|+|.+
T Consensus 191 g~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~F 265 (366)
T PRK00112 191 GVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDMF 265 (366)
T ss_pred CccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCEE
Confidence 467777788899999999999999886544577888999999998886 788666 34444 68899999999999
Q ss_pred EeccccCCCCCCCC
Q psy15244 894 DVAADSMSGICSQP 907 (1427)
Q Consensus 894 D~av~GmG~~tgn~ 907 (1427)
|++.--.-.+-|.+
T Consensus 266 D~~~p~r~Ar~G~a 279 (366)
T PRK00112 266 DCVMPTRNARNGTL 279 (366)
T ss_pred eeCCccccccCCce
Confidence 99987777766654
No 444
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.65 E-value=23 Score=40.69 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCccEEeccCCCchhhhhhccc--cChHHH-HHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHH
Q psy15244 686 VSPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWER-LAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLA 762 (1427)
Q Consensus 686 ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~er-l~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a 762 (1427)
-|+.+++ .|++.|=++|.+. -.++.+-+ .-+++. +..++...+.+.+-+..=+ -.||.+. ++ +.+.+++.
T Consensus 21 sA~~~e~--~G~~ai~~s~~~~-~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~--~~G~g~~-~~-~~~~v~~~ 93 (243)
T cd00377 21 SARLAER--AGFKAIYTSGAGV-AASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADA--DTGYGNA-LN-VARTVREL 93 (243)
T ss_pred HHHHHHH--cCCCEEEeccHHH-HHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEc--CCCCCCH-HH-HHHHHHHH
Confidence 3455666 6999887765332 22222222 223433 3344443343333333323 2467643 45 44558888
Q ss_pred HhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcE-EEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 763 SQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTI-VEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 763 ~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~-v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
.+.|++.+.|=|... +.+.+..-+++++++-. . .+..|.--.|-. ..+....+..++.++.
T Consensus 94 ~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~---~~~~~~IiARTDa~--~~~~~~~~eai~Ra~a 168 (243)
T cd00377 94 EEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD---DLPDFVIIARTDAL--LAGEEGLDEAIERAKA 168 (243)
T ss_pred HHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh---ccCCeEEEEEcCch--hccCCCHHHHHHHHHH
Confidence 899999999955442 44555555555555433 1 112222221210 1113679999999999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..++|||.+.+. |..+++.+..+ .++. ++|+-+....... .-+.-.-.+.|+++|-...
T Consensus 169 y~~AGAD~v~v~---~~~~~~~~~~~----~~~~-~~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 169 YAEAGADGIFVE---GLKDPEEIRAF----AEAP-DVPLNVNMTPGGN--LLTVAELAELGVRRVSYGL 227 (243)
T ss_pred HHHcCCCEEEeC---CCCCHHHHHHH----HhcC-CCCEEEEecCCCC--CCCHHHHHHCCCeEEEECh
Confidence 999999999874 44466555554 4444 7898887655432 1233445567888885544
No 445
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=85.62 E-value=13 Score=42.53 Aligned_cols=113 Identities=13% Similarity=0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC--------CCCCCCCHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN--------PNKKKYSLNYYEDLA 826 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~--------p~~~~~~~~~~~~~a 826 (1427)
..+.++.++++|.+.+-+..+.. ..+....+.+++.|+ .+...-++.+++.. |+......+.+.+.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~--~~~~~l~~~l~~~gl---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD--WDAEALKARLAAAGL---EQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAI 90 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--CCHHHHHHHHHHcCC---eEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHH
Confidence 56778999999999999976432 234555566778898 54432223222211 111011135666778
Q ss_pred HHHHHCCCCEEEEccccCc----CCHHH-HHHHHHHHHHHc-----CCceEEEeecCC
Q psy15244 827 KQLVESGAQVLCLKDMAGL----LKPTA-AKLLIGSFREKY-----PNILIHVHTHDM 874 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt~G~----l~P~~-~~~lv~~lr~~~-----p~ipi~~H~Hnd 874 (1427)
+.+.++|+..|.+. .|. ....+ -..+++.+++.. -++.|.++.||.
T Consensus 91 ~~a~~lg~~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 91 AYARALGCPQVNCL--AGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHhCCCEEEEC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 88888999998874 232 12233 233334444321 178888888853
No 446
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=85.54 E-value=16 Score=43.09 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEE-------ccccC---cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESG-AQVLCL-------KDMAG---LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~G-ad~i~i-------~Dt~G---~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+.+.|.+.++.+.++| +|.|-| +.. | ...|+...++++++|+.+ ++||.+..=.+.--...-+-.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g-g~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l 178 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG-GMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAA 178 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHH
Confidence 56778888888888887 887766 210 2 236899999999999998 8999887654433333444567
Q ss_pred HHhcCCEEEe
Q psy15244 886 VKAGADIVDV 895 (1427)
Q Consensus 886 i~AGad~VD~ 895 (1427)
.++|+|.|+.
T Consensus 179 ~~~G~d~i~~ 188 (301)
T PRK07259 179 EEAGADGLSL 188 (301)
T ss_pred HHcCCCEEEE
Confidence 7899998865
No 447
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=85.49 E-value=54 Score=39.16 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=103.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
-++.+++..+++...+ .|+..|=..||-- .++.|--+-++.+++. .--.+.|- .|.+ ...
T Consensus 42 ~Ls~eei~~~~~~~~~--~Gv~kvRlTGGEP------llR~dl~eIi~~l~~~-~~~~islT---TNG~--------~L~ 101 (322)
T COG2896 42 LLSLEEIRRLVRAFAE--LGVEKVRLTGGEP------LLRKDLDEIIARLARL-GIRDLSLT---TNGV--------LLA 101 (322)
T ss_pred cCCHHHHHHHHHHHHH--cCcceEEEeCCCc------hhhcCHHHHHHHHhhc-ccceEEEe---cchh--------hHH
Confidence 4789999999999988 7999999987742 3455544444555443 11113332 2332 244
Q ss_pred HHHHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.+.+..+++|++.++|..-.=| +......|++|.++|..+..+...+. + ..+.+.+.+
T Consensus 102 ~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-------k---gvNd~ei~~ 171 (322)
T COG2896 102 RRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-------K---GVNDDEIED 171 (322)
T ss_pred HHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEe-------c---CCCHHHHHH
Confidence 5677888999999998644332 34667889999999994444443322 1 278899999
Q ss_pred HHHHHHHCCCC--EEEEccccC-----cCCHHHHHHHHHHHHHHcCCceEE
Q psy15244 825 LAKQLVESGAQ--VLCLKDMAG-----LLKPTAAKLLIGSFREKYPNILIH 868 (1427)
Q Consensus 825 ~a~~l~~~Gad--~i~i~Dt~G-----~l~P~~~~~lv~~lr~~~p~ipi~ 868 (1427)
+++-+.+.|+. .|-+-|+-. .-......++...+.+.++-.++-
T Consensus 172 l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 222 (322)
T COG2896 172 LLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVR 222 (322)
T ss_pred HHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccc
Confidence 99999999975 566777653 111122445555555555434443
No 448
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.47 E-value=7 Score=46.17 Aligned_cols=77 Identities=25% Similarity=0.208 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE---c-cc---cC-----cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCL---K-DM---AG-----LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i---~-Dt---~G-----~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
++.+.|.++++.+.+.|+|.|-| | .+ -| .-.|+.+.++++++|+.. ++||.+-..-+.---..-+-+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHH
Confidence 57889999999999889997776 2 11 11 256999999999999987 788888766444333334445
Q ss_pred HHHhcCCEEE
Q psy15244 885 CVKAGADIVD 894 (1427)
Q Consensus 885 Ai~AGad~VD 894 (1427)
+.++|||.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 7789999874
No 449
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=85.42 E-value=27 Score=41.85 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=99.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nv 754 (1427)
..++.+++..+++.+.+ .|+..|-+.||.- +++.+-.+.++.+++ .++. .+.+...|. .
T Consensus 41 ~~ls~eei~~~i~~~~~--~gv~~V~ltGGEP------ll~~~l~~li~~i~~-~~gi~~v~itTNG~-----------l 100 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVG--LGVRKVRLTGGEP------LLRKDLVELVARLAA-LPGIEDIALTTNGL-----------L 100 (334)
T ss_pred CCCCHHHHHHHHHHHHH--CCCCEEEEECccc------cccCCHHHHHHHHHh-cCCCCeEEEEeCch-----------h
Confidence 35899999999999887 6999998888753 455555555666554 3344 344433331 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccC-C------------hHHHHHHHHHHHHHhcCCCcE-EEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL-N------------SVPNLVKGMDAVQQVTGGSTI-VEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~-n------------d~~~~~~~i~~a~~~G~~~~~-v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++...++|++.+.|..-. + +++....+++.++++|. . +...+... + ..+.+
T Consensus 101 l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~---~~v~in~vv~-----~---g~n~~ 169 (334)
T TIGR02666 101 LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGL---EPVKLNTVVM-----R---GVNDD 169 (334)
T ss_pred HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCC---CcEEEEEEEe-----C---CCCHH
Confidence 2345777888999988875432 2 24566778888888888 3 33332222 1 25778
Q ss_pred HHHHHHHHHHHCCCC--EEEEccccCcCC--H---HHHHHHHHHHHHHcC
Q psy15244 821 YYEDLAKQLVESGAQ--VLCLKDMAGLLK--P---TAAKLLIGSFREKYP 863 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad--~i~i~Dt~G~l~--P---~~~~~lv~~lr~~~p 863 (1427)
.+.++++.+.+.|++ .+.+....+... . ....++++.+++.++
T Consensus 170 ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 170 EIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 888999999999986 233444433211 0 125567777777763
No 450
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=85.42 E-value=3.4 Score=50.00 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
.|.+.+.=+=.-++-+|++..++|..||+..|+.||++-.=-..+....... +.++|+|.| +++|.+|+||..+.
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~I--tIDG~~GGTGAap~ 245 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFI--TIDGAEGGTGAAPL 245 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEE--EEE-TT---SSEEC
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEE--EEeCCCCCCCCCch
Confidence 4777777777777889999999999999999999999987665555544333 899999999 89999999998753
No 451
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=85.28 E-value=5.7 Score=46.71 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
+++.+..+++.+.+.|+|.|++.|.+-- ...+...++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 4556777888888888888888888773 34666666666654
No 452
>PRK13753 dihydropteroate synthase; Provisional
Probab=85.20 E-value=37 Score=39.75 Aligned_cols=202 Identities=15% Similarity=0.215 Sum_probs=108.7
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCceeee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQMI 738 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~qml 738 (1427)
+|--+|=||.+. ++.+..++=+..+-+ .|.+.|++||.+|-..+-.--.|..|+|+..+-+.+. +.+
T Consensus 10 vTPDSFsDGg~~-----~~~d~a~~~a~~m~~--~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~---- 78 (279)
T PRK13753 10 LTEDSFFDESRR-----LDPAGAVTAAIEMLR--VGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR---- 78 (279)
T ss_pred CCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc----
Confidence 445567788652 566777777777766 6999999999877332211112234665533323221 122
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeecc-CC-CCC--C
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGD-LT-NPN--K 814 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d-~~-~p~--~ 814 (1427)
+....|-. +-+++|.++|+|++.=...+++ ..|. +.+.+.+. -..++.... =+ .+. .
T Consensus 79 ------ISIDT~~~----~va~~al~aGadiINDVsg~~d-~~~~---~vva~~~~-----~vVlmH~~~~~~~~~~~~~ 139 (279)
T PRK13753 79 ------VSIDSFQP----ETQRYALKRGVGYLNDIQGFPD-PALY---PDIAEADC-----RLVVMHSAQRDGIATRTGH 139 (279)
T ss_pred ------EEEECCCH----HHHHHHHHcCCCEEEeCCCCCc-hHHH---HHHHHcCC-----CEEEEecCCCCCCCCcccC
Confidence 22222333 3467888999999876666653 3333 33444554 123333310 00 010 1
Q ss_pred CCC------CHHHHHHHHHHHHHCCC--CEEEEccccCcC---CHHHHHHHHHHHHHH---cCCceEEE-----------
Q psy15244 815 KKY------SLNYYEDLAKQLVESGA--QVLCLKDMAGLL---KPTAAKLLIGSFREK---YPNILIHV----------- 869 (1427)
Q Consensus 815 ~~~------~~~~~~~~a~~l~~~Ga--d~i~i~Dt~G~l---~P~~~~~lv~~lr~~---~p~ipi~~----------- 869 (1427)
..| -.+|+.+.++.+.++|+ +.|.|==-.|.. ++++-.+|++.+.+- + +.||-+
T Consensus 140 ~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~-g~PvLvg~SRKsfig~~ 218 (279)
T PRK13753 140 LRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSAL-GLPLLVSVSRKSFLGAT 218 (279)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhC-CCceEEEccHhHHHHHH
Confidence 112 13466667777888998 466665456653 567777787775433 4 566422
Q ss_pred ---eecCCcchHHHHHHHHHHhcCCEE
Q psy15244 870 ---HTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 870 ---H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
..++-..-.+|....|+..||++|
T Consensus 219 ~~~~~~~R~~~T~a~~~~a~~~Ga~iv 245 (279)
T PRK13753 219 VGLPVKDLGPASLAAELHAIGNGADYV 245 (279)
T ss_pred cCCChhhhhHhHHHHHHHHHHcCCCEE
Confidence 222333334445555666777765
No 453
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=85.19 E-value=20 Score=40.85 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+.+.-.+.++++.+.+.+.+.|.-........+..++|+.+.+.+| +.|++++.- | ...+.+.++..|+|.+|+
T Consensus 65 ~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~---~-~P~~i~~~v~~GvD~fDs 140 (238)
T PF01702_consen 65 DDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGV---G-TPEEILEAVYLGVDLFDS 140 (238)
T ss_dssp T-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB-----SHHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCC---C-CHHHHHHHHHcCCcEEcc
Confidence 56667788889998877999999877766678899999999998886 888877322 2 567889999999999999
Q ss_pred cccc
Q psy15244 896 AADS 899 (1427)
Q Consensus 896 av~G 899 (1427)
+..-
T Consensus 141 ~~p~ 144 (238)
T PF01702_consen 141 SYPT 144 (238)
T ss_dssp SHHH
T ss_pred hHHH
Confidence 9743
No 454
>KOG2157|consensus
Probab=85.19 E-value=3.3 Score=51.85 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC-CCcEEEEeeccCC
Q psy15244 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG-KDDMLVEKYIDRP 262 (1427)
Q Consensus 208 GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg-~~~vlVEeyIegg 262 (1427)
....|+||..-.-|+|++++++.+++...+.....+ .+.. ++.+.+++||+.+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccCc
Confidence 467999999999999999999999998876532211 1111 5788999999877
No 455
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=85.17 E-value=59 Score=38.40 Aligned_cols=189 Identities=14% Similarity=0.195 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEccccC--cCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 817 YSLNYYEDLAKQLVES-GAQVLCLKDMAG--LLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~-Gad~i~i~Dt~G--~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
-+++|+++..+..++. |-..=..-|--| ++.|. +.+||++|++. |.+. +.+.+|-++ |.---.-+-.+||.|.
T Consensus 141 Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~-l~~lVqalk~~-~~v~vVSmQTng~~-L~~~lv~eLeeAGLdR 217 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPH-LVDLVQALKEH-KGVEVVSMQTNGVL-LSKKLVDELEEAGLDR 217 (414)
T ss_pred ecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchh-HHHHHHHHhcC-CCceEEEEeeCcee-ccHHHHHHHHHhCCce
Confidence 4566777666666654 222222334333 23333 45566666654 4444 355554332 2222333455799999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
|+.|++++- +.++.+|.+. ..+|+++..++++++.+ +++.+-. .|++=-|+...+.-.+..+..++-
T Consensus 218 iNlSv~aLD--------pk~Ak~L~G~---~dYdv~kvle~aE~i~~-a~idvlI-aPv~lPG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 218 INLSVDALD--------PKLAKMLAGR---KDYDVKKVLEVAEYIAN-AGIDVLI-APVWLPGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred EEeecccCC--------HHHHHHhcCc---cccCHHHHHHHHHHHHh-CCCCEEE-eeeecCCcChHHHHHHHHHHHHhC
Confidence 999999884 2455555443 34899999999999988 7777543 366666666677777777666652
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCCCcc
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL-DFEDVKRAYRTANFLLGDIIKC 1034 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl-~~~ev~~~~~~v~~~lG~~~~v 1034 (1427)
. -....|..+ -....|+. |... ..... .|.|-.+-+.+.-++.|..+++
T Consensus 285 a-Gkk~p~lgi----Qkyipyk~-GRkp-------~~~k~~~fkeFYrwLrelEketg~kpLi 334 (414)
T COG2100 285 A-GKKWPPLGI----QKYIPYKF-GRKP-------VIAKVWPFKEFYRWLRELEKETGVKPLI 334 (414)
T ss_pred C-CCCCCCcce----EEeeeecc-cCCc-------cccccCcHHHHHHHHHHHHHHhCCCccc
Confidence 1 111110110 01111111 2110 01112 6778778888888899998866
No 456
>PRK09989 hypothetical protein; Provisional
Probab=85.16 E-value=59 Score=37.35 Aligned_cols=198 Identities=10% Similarity=0.016 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccc-cc--cc--cCCCc----
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNS-LV--GY--SNYSP---- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n-~v--gy--~~~~~---- 752 (1427)
...+.++.+.+ .||+.||+++.. . -+++.++++.+.. +..+..+..+.. .. .+ ..-+.
T Consensus 16 ~l~~~l~~~~~--~Gfd~VEl~~~~---------~-~~~~~~~~~l~~~-Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09989 16 PFIERFAAARK--AGFDAVEFLFPY---------D-YSTLQIQKQLEQN-HLTLALFNTAPGDINAGEWGLSALPGREHE 82 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEECCcc---------c-CCHHHHHHHHHHc-CCcEEEeccCCCccCCCCCcccCCCccHHH
Confidence 35566667777 799999997532 1 2244454443321 222222221110 00 01 01111
Q ss_pred --chHHHHHHHHHhcCCCEEEEeccC-----C-------hHHHHHHHHHHHHHhcCCCcEEEE-EEEeeccCCCCCCCCC
Q psy15244 753 --AEVGAFCRLASQAGIDIFRVFDPL-----N-------SVPNLVKGMDAVQQVTGGSTIVEA-TICYAGDLTNPNKKKY 817 (1427)
Q Consensus 753 --nvv~~~v~~a~~~Gid~~rif~~~-----n-------d~~~~~~~i~~a~~~G~~~~~v~~-~i~~t~d~~~p~~~~~ 817 (1427)
+..+..++.|.+.|.+.++++... + -+++++...+.+++.|. .... .+... ..+...-.
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~lE~l~~~---~~~~~~~~ 156 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK---RILVEALSPG---VKPHYLFS 156 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---EEEEEeCCCC---CCCCCccC
Confidence 124566677788899988876432 1 23566777778888887 3211 11100 00110012
Q ss_pred CHHHHHHHHHHHHHCCCCEE-EEccccCcCCHH-HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 818 SLNYYEDLAKQLVESGAQVL-CLKDMAGLLKPT-AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 818 ~~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l~P~-~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+.+...+++ .+.+.+.+ ..-|+.-...+. ...++++... +--.|+|.+|..+ .
T Consensus 157 ~~~~~~~ll---~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~----~ri~hvHi~D~~~------------------~ 211 (258)
T PRK09989 157 SQYQALAIV---EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYA----GKYAHVQIAGLPD------------------R 211 (258)
T ss_pred CHHHHHHHH---HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhh----hhEEEEEECCCCC------------------C
Confidence 333344444 34454433 455765544331 2333343333 3335888886321 1
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
.. .| .|.-+...++.+|+..|++--+.+
T Consensus 212 ~~--pG--~G~id~~~i~~al~~~Gy~g~is~ 239 (258)
T PRK09989 212 HE--PD--DGEINYPWLFRLFDEVGYQGWIGC 239 (258)
T ss_pred CC--CC--CCCcCHHHHHHHHHHcCCCeEEEE
Confidence 11 22 467788899999999887643333
No 457
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.14 E-value=4.2 Score=48.56 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccc-cceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTK-VDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
++-++|+|.|-|..+...++-|+.+|.++++++..++......++ ||+.+.-. +. ...+..++. +|+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~----------~~-~~~~~~~~~-~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS----------DS-DALEAVKEI-ADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC----------Cc-hhhHHhHhh-CcE
Confidence 557899999999999999999999999999999998877667777 67665521 11 222222222 999
Q ss_pred EEeCCCcccccHHHHHHHHHCC-CceeCCCH-HHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 134 IHPGYGFLSEREDFAKAVIGAG-LEFIGPAP-NVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~G-i~fiGps~-eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
|+-..+ -.......+.+...| +..+|... .... .-..+.-+++ ++.+.-+..+...+.+|+.+|+.+.+.
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~--~~~i~GS~~g~~~d~~e~l~f~~~g~I-- 304 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILK--EISIVGSLVGTRADLEEALDFAAEGKI-- 304 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhc--CeEEEEEecCCHHHHHHHHHHHHhCCc--
Confidence 987665 211123445555555 33455442 1110 0111112222 233222222234566777777776652
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHH
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQS 242 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ 242 (1427)
||.-. .....+|..++|+++.+
T Consensus 305 --kp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 305 --KPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred --eeeEE-------eeECHHHHHHHHHHHHc
Confidence 33211 35578889999988754
No 458
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.12 E-value=22 Score=45.28 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHH------HHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDA------VQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~------a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
-..+-++...++++..+-|.+.-+. ...+...+++ +++... ...|-+++... ..
T Consensus 183 sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~-~l~vgaavg~~-------------~~ 248 (505)
T PLN02274 183 DLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDG-KLLVGAAIGTR-------------ES 248 (505)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCC-CEEEEEEEcCC-------------cc
Confidence 3445566666777777766654332 2344444443 122222 12344443322 12
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..+-+++|.++|+|.|.| |++- ..-..+-++|+.+|+.+|+++|-.=.= .....+..|+++|||.|=+++
T Consensus 249 ~~~r~~~l~~ag~d~i~i-D~~~-g~~~~~~~~i~~ik~~~p~~~vi~g~v----~t~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVL-DSSQ-GDSIYQLEMIKYIKKTYPELDVIGGNV----VTMYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred HHHHHHHHHHcCCCEEEE-eCCC-CCcHHHHHHHHHHHHhCCCCcEEEecC----CCHHHHHHHHHcCcCEEEECC
Confidence 357899999999999988 7753 333455689999999999888743111 123457889999999997743
No 459
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=84.86 E-value=14 Score=42.32 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLA 826 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a 826 (1427)
.+.+.++|+|.+-+.++... ++.|...++.+.+.-. .+....| .|+.+-.+++...+.+
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-------~~pviaD--~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-------LALIVAD--LPFGAYGAPTAAFELA 95 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-------CCCEEEe--CCCCCCcCHHHHHHHH
Confidence 45556789999988887652 3344444444443221 0112223 2333233668889999
Q ss_pred HHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCC------cc-------------hHHHHHHHHHH
Q psy15244 827 KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDM------AG-------------TGVATTLACVK 887 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd------~G-------------lA~An~laAi~ 887 (1427)
+++.++||+.|.|-|.. +..+.|+++++. .++|--|+=-+ +| -++.-+.+-.+
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~ 167 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP 167 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence 99999999999999963 455678888866 37777665432 22 33555667778
Q ss_pred hcCCEEEe
Q psy15244 888 AGADIVDV 895 (1427)
Q Consensus 888 AGad~VD~ 895 (1427)
||||.|=.
T Consensus 168 AGAd~i~~ 175 (240)
T cd06556 168 AGADLIVM 175 (240)
T ss_pred cCCCEEEE
Confidence 99988743
No 460
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.85 E-value=29 Score=41.95 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=107.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
=+.++.+++|+.+.+ .|...+=- |-+-|.- +-|..-. .+.|+.|++....+-+..+..- -+
T Consensus 112 Es~eq~l~~A~~lk~--~g~~~~r~g~~kpRtsp--~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev----------~d-- 174 (352)
T PRK13396 112 ENEEMIVETAKRVKA--AGAKFLRGGAYKPRTSP--YAFQGHG-ESALELLAAAREATGLGIITEV----------MD-- 174 (352)
T ss_pred cCHHHHHHHHHHHHH--cCCCEEEeeeecCCCCC--cccCCch-HHHHHHHHHHHHHcCCcEEEee----------CC--
Confidence 456788999999998 57765542 1111111 2232222 5666666665544444444321 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
...++.+.+. +|++.|-.. ++.|.. .++++.+.|+ -+ +.-+| .-.+++.+...++.+.+.|-+
T Consensus 175 ~~~v~~~~~~-~d~lqIga~--~~~n~~-LL~~va~t~k---PV---llk~G-------~~~t~ee~~~A~e~i~~~Gn~ 237 (352)
T PRK13396 175 AADLEKIAEV-ADVIQVGAR--NMQNFS-LLKKVGAQDK---PV---LLKRG-------MAATIDEWLMAAEYILAAGNP 237 (352)
T ss_pred HHHHHHHHhh-CCeEEECcc--cccCHH-HHHHHHccCC---eE---EEeCC-------CCCCHHHHHHHHHHHHHcCCC
Confidence 1226666666 788777544 333322 3555556676 22 22222 124899999999999999999
Q ss_pred EEEEccc-----c-CcCCHHHH--HHHHHHHHHHcCCceEEE---eecCCcchHHHHHHHHHHhcCC--EEEecc
Q psy15244 836 VLCLKDM-----A-GLLKPTAA--KLLIGSFREKYPNILIHV---HTHDMAGTGVATTLACVKAGAD--IVDVAA 897 (1427)
Q Consensus 836 ~i~i~Dt-----~-G~l~P~~~--~~lv~~lr~~~p~ipi~~---H~Hnd~GlA~An~laAi~AGad--~VD~av 897 (1427)
.|.||.. . +. |... -..+..+|+.+ ++||-+ |.=-...+..+.+++|+.+||| +|+.=.
T Consensus 238 ~viL~erG~rtf~s~y--~~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 238 NVILCERGIRTFDRQY--TRNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred eEEEEecCCccCcCCC--CCCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 8888865 2 22 2222 22366778777 789844 2223333455788999999999 877544
No 461
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.73 E-value=6.9 Score=44.42 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChH--HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSV--PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~--~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.+..+++++.+.+.|.+.+-|.+..-++ +.....|+.+++.|+ .+-.-+-.- +..++ ...+++.+++.++..
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~---~v~~EvG~K--~~~~~-~~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGF---MVLSEVGKK--SPEKD-SELTPDDRIKLINKD 143 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCC---eEecccccc--CCccc-ccCCHHHHHHHHHHH
Confidence 3568889999999999999999987765 467789999999999 443322222 11112 257889999999999
Q ss_pred HHCCCCE-----------EEEccccCcCCHHHHHHHHHH
Q psy15244 830 VESGAQV-----------LCLKDMAGLLKPTAAKLLIGS 857 (1427)
Q Consensus 830 ~~~Gad~-----------i~i~Dt~G~l~P~~~~~lv~~ 857 (1427)
.++||+. +.|+|..|-.....+.+++..
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 9999985 466777777777766666553
No 462
>PRK08508 biotin synthase; Provisional
Probab=84.69 E-value=34 Score=40.03 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcccc-CcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH-HhcCCE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMA-GLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV-KAGADI 892 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~-G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi-~AGad~ 892 (1427)
.+++.+++.++++.+.|++.+++.++. |.-.+ +.+.++++.+|++.|++ |.|...|+...-.+..+ +||++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l----~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGL----HLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCc----EEEecCCCCCHHHHHHHHHcCCCE
Confidence 588999999999999999999985322 22222 45677888888877543 44446788888888888 899999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
+...+-. +. + .+. ...++-++....+..+...+ .|+.+-. --++|-+==.+..-.|...+.+.-
T Consensus 116 ~~~~lEt-~~--------~---~~~--~i~~~~~~~~~l~~i~~a~~-~Gi~v~s-g~I~GlGEt~ed~~~~l~~lr~L~ 179 (279)
T PRK08508 116 YNHNLET-SK--------E---FFP--KICTTHTWEERFQTCENAKE-AGLGLCS-GGIFGLGESWEDRISFLKSLASLS 179 (279)
T ss_pred Ecccccc-hH--------H---Hhc--CCCCCCCHHHHHHHHHHHHH-cCCeecc-eeEEecCCCHHHHHHHHHHHHcCC
Confidence 8774332 11 1 111 22344556665655555533 4543322 234554321233333333332221
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccc-h-hhHHHH
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPS-S-KVVADL 1044 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~-s-q~vg~~ 1044 (1427)
...-|+. +++.+||-. + ....+...+.++.++-.|-.|.+.-...+. - .+.|++
T Consensus 180 ~~svpl~-----------~~~p~~~t~---~----~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~ 235 (279)
T PRK08508 180 PHSTPIN-----------FFIPNPALP---L----KAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGER 235 (279)
T ss_pred CCEEeeC-----------CcCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhh
Confidence 1112222 234555532 1 111246778999999999998765544444 2 334553
No 463
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=84.65 E-value=46 Score=40.74 Aligned_cols=157 Identities=10% Similarity=0.156 Sum_probs=94.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc-eeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP-FQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~-~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..++..+.+ .|+..|-+.||-- +++.+-.+-++.+++. ++.. +.+..-| +. .
T Consensus 89 ~ls~eei~~~i~~~~~--~Gv~~I~~tGGEP------llr~dl~eli~~l~~~-~gi~~i~itTNG-----~l------L 148 (373)
T PLN02951 89 LLSQDEIVRLAGLFVA--AGVDKIRLTGGEP------TLRKDIEDICLQLSSL-KGLKTLAMTTNG-----IT------L 148 (373)
T ss_pred cCCHHHHHHHHHHHHH--CCCCEEEEECCCC------cchhhHHHHHHHHHhc-CCCceEEEeeCc-----ch------H
Confidence 3889999999998887 7999998877743 3444433444444442 4443 3332222 11 2
Q ss_pred HHHHHHHHhcCCCEEEEecc-CC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDP-LN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~-~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.|..- ++ .++.....++.+++.|.. .+...+... + ..+.+.+.
T Consensus 149 ~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~--~vkin~vv~-----~---g~N~~Ei~ 218 (373)
T PLN02951 149 SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYN--PVKVNCVVM-----R---GFNDDEIC 218 (373)
T ss_pred HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--cEEEEEEec-----C---CCCHHHHH
Confidence 23466777899998887643 32 134566778888888862 233222221 1 36778899
Q ss_pred HHHHHHHHCCCCE--EEEccccCcC--C--HHHHHHHHHHHHHHcC
Q psy15244 824 DLAKQLVESGAQV--LCLKDMAGLL--K--PTAAKLLIGSFREKYP 863 (1427)
Q Consensus 824 ~~a~~l~~~Gad~--i~i~Dt~G~l--~--P~~~~~lv~~lr~~~p 863 (1427)
++++.+.+.|++. |.+.-+.|.. . .....++...|++.+|
T Consensus 219 ~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 219 DFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred HHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 9999999988753 4444443321 1 1125667777777764
No 464
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=84.64 E-value=38 Score=41.07 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc-CCHHHHHHHHHHHHHHcCCceEEEe-------ecCCcchHHHHHHH-HH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL-LKPTAAKLLIGSFREKYPNILIHVH-------THDMAGTGVATTLA-CV 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~lv~~lr~~~p~ipi~~H-------~Hnd~GlA~An~la-Ai 886 (1427)
+.+++.+++.++++.+.|++.++|.+-... +..+.+.++++.+|+.+|++.++.- .=+..|+.....+. -.
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 368999999999999999999999732222 2236788999999999875554441 12346776666555 44
Q ss_pred HhcCCEEE
Q psy15244 887 KAGADIVD 894 (1427)
Q Consensus 887 ~AGad~VD 894 (1427)
+||++.+.
T Consensus 158 eAGld~~~ 165 (351)
T TIGR03700 158 EAGLDSMP 165 (351)
T ss_pred HcCCCcCC
Confidence 68999876
No 465
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=84.59 E-value=1.1 Score=53.08 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=30.1
Q ss_pred eeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1395 TLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1395 ~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.++.+|.|.+++|++||.|++||+|+.|+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld 79 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTID 79 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEEC
Confidence 45999999999999999999999999999986
No 466
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=84.58 E-value=45 Score=38.55 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=117.5
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHH-hCCCCceee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRE-LIPNIPFQM 737 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~-~~p~~~~qm 737 (1427)
+.=+|-|+=.|- ..+.+|+.++.+...+ .|++++=+-.+. ++...+ ...++++.+
T Consensus 20 ~~aiDh~~l~gp------~~~~~~~~~~~~~a~~--~~~~~v~~~p~~----------------~~~~~~~~~~~~~~~~ 75 (258)
T TIGR01949 20 IVPMDHGVSNGP------IKGLVDIRKTVNEVAE--GGADAVLLHKGI----------------VRRGHRGYGKDVGLII 75 (258)
T ss_pred EEECCCccccCC------CCCcCCHHHHHHHHHh--cCCCEEEeCcch----------------hhhcccccCCCCcEEE
Confidence 345677765552 1345677777777766 588888664321 111111 123455433
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
-+-+....|...... ..-..++.|++.|++.+.+-+... .++.+....+.+++.|. .+-+ +.+.. .
T Consensus 76 ~~~~~~~~g~~~~~~-~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~---~liv-~~~~~---G 147 (258)
T TIGR01949 76 HLSASTSLSPDPNDK-RIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGV---PLLA-MMYPR---G 147 (258)
T ss_pred EEcCCCCCCCCCCcc-eeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC---CEEE-EEecc---C
Confidence 222222233222221 233358899999999877766532 22345555566666776 2222 23320 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEee-c--CCcchHHHHHHHHHHh
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT-H--DMAGTGVATTLACVKA 888 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~-H--nd~GlA~An~laAi~A 888 (1427)
......+.+.+...++.+.++|||.|.+. .. ..++ .++.+.+.. .+||-.=. - +|...++.|.-.++++
T Consensus 148 vh~~~~~~~~~~~~~~~a~~~GADyikt~-~~--~~~~----~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~a 219 (258)
T TIGR01949 148 PHIDDRDPELVAHAARLGAELGADIVKTP-YT--GDID----SFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEA 219 (258)
T ss_pred cccccccHHHHHHHHHHHHHHCCCEEecc-CC--CCHH----HHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 11112455667777788889999999975 11 2223 344444444 46664422 2 2566778999999999
Q ss_pred cCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 889 GADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 889 Gad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
||+.+-+.-+= ..+++..+.+..|..
T Consensus 220 Ga~Gia~g~~i----~~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 220 GAAGVAVGRNI----FQHDDPVGITKAVCK 245 (258)
T ss_pred CCcEEehhhHh----hcCCCHHHHHHHHHH
Confidence 99965433222 234555566665554
No 467
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=84.58 E-value=20 Score=42.11 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~ 823 (1427)
.+.|.+|.++|.+.+-+=.|--++ +.-++.+++|+..|. .||+-|-..+. .++. ..++++...
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv---~VEaElG~igg--~ed~~~~~~~~~~~T~peea~ 161 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDC---SVEAELGRLGG--VEDDMSVDAESAFLTDPQEAK 161 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEEeeCC--ccCCcccccchhcCCCHHHHH
Confidence 346889999999887554444443 455788899999999 88877766542 2221 134566555
Q ss_pred HHHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++ +.|+|.|.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|..--....|++.|+.-|+..
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~-~vPLVLHG--gSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 162 RFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV-DVPLVLHG--ASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred HHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeC
Confidence 5543 45999777641 22222 4666678899999998 89987765 56777889999999999998765
No 468
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.57 E-value=15 Score=41.53 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga 834 (1427)
..++++.+.+.|+|.+.+-+.. . ...++.+++.+. .+-. . .++. +.++.+.+.|+
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~-~----~~~~~~~~~~~i---~~i~----~---------v~~~----~~~~~~~~~ga 123 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGP-P----AEVVERLKAAGI---KVIP----T---------VTSV----EEARKAEAAGA 123 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-C----HHHHHHHHHcCC---EEEE----e---------CCCH----HHHHHHHHcCC
Confidence 5678999999999999886652 1 334555666565 3211 1 1222 44566777899
Q ss_pred CEEEEcc--ccCcCCHH--HHHHHHHHHHHHcCCceEEEeecCCcchHH-HHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 835 QVLCLKD--MAGLLKPT--AAKLLIGSFREKYPNILIHVHTHDMAGTGV-ATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 835 d~i~i~D--t~G~l~P~--~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~-An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
|.|.+-. +.|...+. ...++++.+++.+ ++||-... |... .|+..++++||+.|.+.-.=+. ....+..
T Consensus 124 d~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~G----GI~~~~~v~~~l~~GadgV~vgS~l~~-~~e~~~~ 197 (236)
T cd04730 124 DALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAG----GIADGRGIAAALALGADGVQMGTRFLA-TEESGAS 197 (236)
T ss_pred CEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEEC----CCCCHHHHHHHHHcCCcEEEEchhhhc-CcccCCC
Confidence 9887633 22433332 3467888888877 78887754 6654 7888889999999988644443 3333444
Q ss_pred HHHHHHHHhC
Q psy15244 910 GTIVSCLENT 919 (1427)
Q Consensus 910 E~vv~~L~~~ 919 (1427)
..+...|...
T Consensus 198 ~~~~~~~~~~ 207 (236)
T cd04730 198 PAYKQALLAA 207 (236)
T ss_pred HHHHHHHHcC
Confidence 5566666655
No 469
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.54 E-value=1.7 Score=54.46 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
..|.++..|.|.+++|++||.|++||+|+.|..
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 356666666666666666666666666666643
No 470
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=84.47 E-value=25 Score=40.68 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC-CCceeeeecccccccccCCCcchHHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP-NIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p-~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.+++.+.++.+.+ .|+..+-+--|.. .+...++++.+|+.++ +..+.+ -+ | -+|+ .+...+|
T Consensus 86 ~~~~~~~~~~~~~--~G~~~~KiKvg~~--------~~~d~~~v~~vr~~~g~~~~l~v--Da-n-~~~~---~~~a~~~ 148 (265)
T cd03315 86 PAEVAEEARRALE--AGFRTFKLKVGRD--------PARDVAVVAALREAVGDDAELRV--DA-N-RGWT---PKQAIRA 148 (265)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEecCCC--------HHHHHHHHHHHHHhcCCCCEEEE--eC-C-CCcC---HHHHHHH
Confidence 4666666665555 5988777633321 1345788999999886 454432 22 2 2343 3345667
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.|++.+.--.+..+++.+...- +..+. .|+..+ +-++...+.+ .+..-.+|.|.
T Consensus 149 ~~~l~~~~i~~iEeP~~~~d~~~~~~l~---~~~~i-------pia~dE-------~~~~~~~~~~---~i~~~~~d~v~ 208 (265)
T cd03315 149 LRALEDLGLDYVEQPLPADDLEGRAALA---RATDT-------PIMADE-------SAFTPHDAFR---ELALGAADAVN 208 (265)
T ss_pred HHHHHhcCCCEEECCCCcccHHHHHHHH---hhCCC-------CEEECC-------CCCCHHHHHH---HHHhCCCCEEE
Confidence 8888888998887655555666554432 22233 233322 2455555443 23334578777
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
++=+ =+.-...+.++....+ .. ++++.+|+|...|++.+.++
T Consensus 209 ~k~~-~~GGi~~~~~~~~~A~-~~-gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 209 IKTA-KTGGLTKAQRVLAVAE-AL-GLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred Eecc-cccCHHHHHHHHHHHH-Hc-CCcEEecCccchHHHHHHHH
Confidence 6532 2222334555555444 44 79999999988888876654
No 471
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=84.46 E-value=27 Score=41.44 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.+++.+.++.+.+ .|+..+.+--|.. .+...++++.+|+.+++..+. +-+. -+|+. +...++
T Consensus 134 ~~~~~~~~~~~~~~--~Gf~~iKik~g~~--------~~~d~~~v~~lr~~~g~~~l~--vD~n--~~~~~---~~A~~~ 196 (316)
T cd03319 134 TPEAMAAAAKKAAK--RGFPLLKIKLGGD--------LEDDIERIRAIREAAPDARLR--VDAN--QGWTP---EEAVEL 196 (316)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEEeCCC--------hhhHHHHHHHHHHhCCCCeEE--EeCC--CCcCH---HHHHHH
Confidence 35666666666655 5999988732211 145678999999988744333 2221 23432 335667
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.++..+.=..+.++++.+.+. .+..+. .|+..+ +-++...+.++ +..-++|.+.
T Consensus 197 ~~~l~~~~l~~iEeP~~~~d~~~~~~L---~~~~~i-------pIa~~E-------~~~~~~~~~~~---~~~~~~d~v~ 256 (316)
T cd03319 197 LRELAELGVELIEQPVPAGDDDGLAYL---RDKSPL-------PIMADE-------SCFSAADAARL---AGGGAYDGIN 256 (316)
T ss_pred HHHHHhcCCCEEECCCCCCCHHHHHHH---HhcCCC-------CEEEeC-------CCCCHHHHHHH---HhcCCCCEEE
Confidence 787778888777644444566655542 122233 223222 24555554432 3335678776
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
++ ..=+.-...+.++....+ .. ++++.+|+|...+++.+.++
T Consensus 257 ~~-~~~~GGi~~~~~~~~~a~-~~-gi~~~~~~~~~~~i~~~a~~ 298 (316)
T cd03319 257 IK-LMKTGGLTEALRIADLAR-AA-GLKVMVGCMVESSLSIAAAA 298 (316)
T ss_pred Ee-ccccCCHHHHHHHHHHHH-Hc-CCCEEEECchhhHHHHHHHH
Confidence 64 333333445555544444 45 79999999988888776443
No 472
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=84.41 E-value=1.7 Score=53.38 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1371 VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1371 v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+.++.-..=.....+++.. +..|.++.+|+|.++.+++||.|++||+|++|+
T Consensus 43 ~~v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld 97 (397)
T PRK15030 43 VTVKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQID 97 (397)
T ss_pred EeeeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEEC
Confidence 3444444323333445667644 788999999999999999999999999999986
No 473
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=84.41 E-value=2 Score=55.61 Aligned_cols=73 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred cCCCCCCCceecCCCeEEEEEEecCCCEEec---CCEEEEEEcCCceeeeecCCCeEEEEEE------------------
Q psy15244 1351 KADSDTAGEIGAPMPGNIIEVKVKVGQQVKK---NDVLIVMSVMKTETLIHASADGVVKEIF------------------ 1409 (1427)
Q Consensus 1351 ~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~---G~~l~~ieamKme~~i~Ap~~G~V~~i~------------------ 1409 (1427)
.........|.||+.|+++.+.=-+-..-.+ |+-+++.-. +..|.||++|+|+.+.
T Consensus 492 ~~~~~~~~~v~aP~~G~vi~l~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLI 568 (648)
T PRK10255 492 VPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVV 568 (648)
T ss_pred cccccCceEEEecCCcEEEEcccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEE
Q ss_pred -----------------ecCCCeeCCCCEEEEEe
Q psy15244 1410 -----------------VEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1410 -----------------v~~G~~V~~g~~L~~i~ 1426 (1427)
|++||+|++||+|++++
T Consensus 569 HiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 569 HMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EeccchhccCCCCceEEecCCCEEcCCCEEEEEc
No 474
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.38 E-value=53 Score=37.72 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCC------
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYS------ 751 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~------ 751 (1427)
++.-+.....+.+.+ .||+.||+|+.. ..++-+-.+.+.+.--.+....+..+...-+...+.
T Consensus 12 ~~~~~l~~~l~~~a~--~Gf~~VEl~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK09997 12 FGEYDFLARFEKAAQ--CGFRGVEFMFPY---------DYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGRE 80 (258)
T ss_pred ccCCCHHHHHHHHHH--hCCCEEEEcCCC---------CCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcH
Q ss_pred ---cchHHHHHHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 752 ---PAEVGAFCRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 752 ---~nvv~~~v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
.+..++.++.|.+.|.+.++++..... .+.+..+.+.+++.|. ..++-.-..+..|...-
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-----~l~lE~~n~~~~~~~~~ 155 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI-----LLLIEPINHFDIPGFHL 155 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-----EEEEEeCCCcCCCCCcc
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH-HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP-TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P-~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+.+...++++.+. .-..--.-|+.=.... ....+.++.+.+.+ .|+|.+|..+-+
T Consensus 156 ~~~~~~~~ll~~v~--~~~v~l~~D~~h~~~~g~~~~~~~~~~~~ri----~~vHikD~~~~~----------------- 212 (258)
T PRK09997 156 TGTRQALKLIDDVG--CCNLKIQYDIYHMQRMEGELTNTMTQWADKI----GHLQIADNPHRG----------------- 212 (258)
T ss_pred CCHHHHHHHHHHhC--CCCEEEEeEHHHhhhcCCcHHHHHHHhhCcc----cEEEeCCCCCCC-----------------
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
-=+.|.-+...++.+|+..|++
T Consensus 213 -----~~G~G~id~~~i~~aL~~~Gy~ 234 (258)
T PRK09997 213 -----EPGTGEINYDYLFKVIENSDYN 234 (258)
T ss_pred -----CCCCCcCCHHHHHHHHHHhCCC
No 475
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=84.32 E-value=2.9 Score=51.16 Aligned_cols=75 Identities=32% Similarity=0.360 Sum_probs=49.6
Q ss_pred EEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEE-------EecCCCEEecCCEEE--EEEcCCceeee
Q psy15244 1327 VFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEV-------KVKVGQQVKKNDVLI--VMSVMKTETLI 1397 (1427)
Q Consensus 1327 v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v-------~V~~Gd~V~~G~~l~--~ieamKme~~i 1397 (1427)
+-++++|....|.-..... .+..+...|.+|.|--+|+|.++ .|++||.|++||+|+ .++....+..
T Consensus 162 V~i~~~GT~l~I~v~E~~~---p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~- 237 (385)
T PF06898_consen 162 VGIEIKGTRLIIEVVEKVD---PEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE- 237 (385)
T ss_pred EEEEEEeeEEEEEEEEcCC---CCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE-
Confidence 5566677766552111111 13344567899999999999975 789999999999998 5555444444
Q ss_pred ecCCCeEEE
Q psy15244 1398 HASADGVVK 1406 (1427)
Q Consensus 1398 ~Ap~~G~V~ 1406 (1427)
-+.+|.|.
T Consensus 238 -v~A~G~V~ 245 (385)
T PF06898_consen 238 -VHADGDVK 245 (385)
T ss_pred -ECCcEEEE
Confidence 44566664
No 476
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=84.28 E-value=19 Score=42.32 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDL 825 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~ 825 (1427)
.+++.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. ..++++...++
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv---~VEaElG~vgg--~ed~~~~~~~~yT~peea~~F 164 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGV---SVEAELGTVGG--QEDDVVADGIIYADPKECQEL 164 (286)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccCC--ccCCCCCcccccCCHHHHHHH
Confidence 345889999999887665554444 345678889999998 88888776642 2221 12467766666
Q ss_pred HHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.+.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|..-.....|+..|+.-|+...
T Consensus 165 v~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 165 VE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST-GLPLVLHG--GTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred HH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEEecc
Confidence 54 56999776642 22222 2444466788888888 89987765 578888999999999999987653
No 477
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=84.23 E-value=3 Score=53.98 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCC-------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.+.|+=.+.+|++||+|++||+|+...--+ ..+.+.-.-......+....+..|+.||.++.+
T Consensus 556 ~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 556 KLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred hcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 456777789999999999999999875322 222322222222233444556678889987764
No 478
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=84.23 E-value=0.88 Score=56.56 Aligned_cols=43 Identities=33% Similarity=0.312 Sum_probs=36.5
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~ 1409 (1427)
|.--+..|++||+|++||+|+..+. .....|.||++|+|++|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 4455789999999999999998833 258899999999999885
No 479
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.16 E-value=59 Score=39.67 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=125.5
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.+-..+.++...+.|++.+-+-.+...-.. .+.++.+.+.+. .+.. ..+. +.+.+. ++.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~-~e~i~~i~~~~~---~~~i-~~~~---------r~~~~d----i~~a 81 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEE-RAVIRAIVALGL---PARL-MAWC---------RARDAD----IEAA 81 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHH-HHHHHHHHHcCC---CcEE-EEEc---------CCCHHH----HHHH
Confidence 45555667788888999999999655432211 234455555544 1111 1111 334333 4667
Q ss_pred HHCCCCEEEEccccCc--------CCHHH----HHHHHHHHHHHcCCceEEEeecCC----cchHHHHHHHHHHhcCCEE
Q psy15244 830 VESGAQVLCLKDMAGL--------LKPTA----AKLLIGSFREKYPNILIHVHTHDM----AGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~--------l~P~~----~~~lv~~lr~~~p~ipi~~H~Hnd----~GlA~An~laAi~AGad~V 893 (1427)
.++|++.|.|...+.- .++.+ +.+.|+..|+. +..+.+.+=|. ....+..+.++.++|++.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 7889999998886531 23333 33555555554 46666665443 3444455567888999987
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
.. .-.-|..-.-.+.+++..++.. +...+++ +-|-+.-. .+..+....
T Consensus 160 ~l--~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H--------------------------~HNd~GlA---~ANalaA~~ 208 (365)
T TIGR02660 160 RF--ADTVGILDPFSTYELVRALRQAVDLPLEMH--------------------------AHNDLGMA---TANTLAAVR 208 (365)
T ss_pred EE--cccCCCCCHHHHHHHHHHHHHhcCCeEEEE--------------------------ecCCCChH---HHHHHHHHH
Confidence 32 2222222222344455554432 1111111 11111111 122222221
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHH-HHHHHH-HHCCC----CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHH
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYT-NLKFRT-MSFGL----DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAI 1046 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~s-nl~~ql-~~~gl----~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~ 1046 (1427)
.--..++ ..+.| +|+-+|-.-. .+...| ..+|. +++.+.+....+.+.+|.++. |..=+||..|+
T Consensus 209 aGa~~vd-~tl~G------iGeraGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~--~~~p~vG~~~f 279 (365)
T TIGR02660 209 AGATHVN-TTVNG------LGERAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIP--PQKPVVGESVF 279 (365)
T ss_pred hCCCEEE-EEeec------cccccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC--CCCCcccHhHH
Confidence 1112233 22222 3454553321 233334 44465 788888888889999998753 45669999884
Q ss_pred HHHHcCCChh
Q psy15244 1047 FMTQEKLSYR 1056 (1427)
Q Consensus 1047 ~~v~~~~~~~ 1056 (1427)
- -..|.--+
T Consensus 280 ~-h~sGiH~~ 288 (365)
T TIGR02660 280 T-HESGIHVD 288 (365)
T ss_pred H-hccchhHH
Confidence 3 33454433
No 480
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=84.12 E-value=66 Score=39.28 Aligned_cols=232 Identities=11% Similarity=0.071 Sum_probs=131.8
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccc-cCCCcc
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGY-SNYSPA 753 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy-~~~~~n 753 (1427)
+.-|+.+++++.++.+.+ .|+..+=+-||-.-+..+.|. -+-++.+++..|++.+-.+.-+. +-| .+....
T Consensus 87 ~y~Ls~eeI~~~~~~~~~--~G~~Evli~gG~~p~~~~~y~----~~~~~~ik~~~p~~~i~a~s~~e--i~~~~~~~~~ 158 (370)
T COG1060 87 AYTLSPEEILEEVREAVK--RGITEVLIVGGEHPELSLEYY----EELFRTIKEEFPDLHIHALSAGE--ILFLAREGGL 158 (370)
T ss_pred ccccCHHHHHHHHHHHHH--cCCeEEEEecCcCCCcchHHH----HHHHHHHHHhCcchhhcccCHHH--hHHHHhccCC
Confidence 456999999999999998 799999888876544433322 13457778777866554443220 111 111222
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
..++.+++.+++|+|.+=.+-+-= +.+.=.+.++.|.++|+ ...+++.|.+ -++ +.+.
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI---~~tatml~Gh---~E~--~ed~ 230 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI---PTTATMLLGH---VET--REDR 230 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CccceeEEEe---cCC--HHHH
Confidence 356668888899998653332211 22233467788999999 5566777763 111 2222
Q ss_pred HHHHHHHHHHHH-C-CCCEEEE-----cccc---Cc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 820 NYYEDLAKQLVE-S-GAQVLCL-----KDMA---GL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 820 ~~~~~~a~~l~~-~-Gad~i~i-----~Dt~---G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
-.-+.-++.+.+ . |...+.+ +.+. .. ..+.+....|...|--+ +..|...-=-..-+++.-..+|+
T Consensus 231 ~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l-~~~i~~~~a~w~~~g~~~~~~~l 309 (370)
T COG1060 231 IDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFL-DNNISNIQASWLRDGVILAQAAL 309 (370)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHc-cCccccccCcccccchHHHHHHH
Confidence 222333344443 3 3433322 1221 12 23344444444444333 22222222233444555678899
Q ss_pred HhcCCEEEecccc--CCCCCC-----CCcHHHHHHHHHhCCCCC
Q psy15244 887 KAGADIVDVAADS--MSGICS-----QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 887 ~AGad~VD~av~G--mG~~tg-----n~~lE~vv~~L~~~g~~t 923 (1427)
.+||+=+.+++.. .--.+| .++.++++.+++..|+.+
T Consensus 310 ~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 310 LSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred HhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcCCCe
Confidence 9999988777655 333355 778899999999887654
No 481
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=84.11 E-value=1 Score=52.60 Aligned_cols=51 Identities=29% Similarity=0.342 Sum_probs=39.6
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-ceeeeecCCCeEEEEEEecC
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-TETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-me~~i~Ap~~G~V~~i~v~~ 1412 (1427)
++-|+.|.=-++.|++||.|++||+|++ .-| --.-++||.+|+|.+|+-.+
T Consensus 32 lg~ey~gmrp~mkV~~gD~VkkGq~LfE--dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 32 LGEEYVGMRPSMKVREGDAVKKGQVLFE--DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred ccccccCCCCcceeccCCeeeccceeee--cccCCCeEEeccCCceEEEeeccc
Confidence 3446667667899999999999999985 344 34468999999999887443
No 482
>PLN02428 lipoic acid synthase
Probab=83.96 E-value=30 Score=41.83 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=91.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchh---hhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCc
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSH---TCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSP 752 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd---~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~ 752 (1427)
.+.+.++..++|+.+.+ .|+..+=+.++.+-| ....+ -.+-++.|++..|.+.+..+..+- .|
T Consensus 128 ~~~d~~Ep~~vA~~v~~--~Glk~vvltSg~rddl~D~ga~~----~~elir~Ir~~~P~i~Ie~L~pdf--~~------ 193 (349)
T PLN02428 128 PPPDPDEPENVAEAIAS--WGVDYVVLTSVDRDDLPDGGSGH----FAETVRRLKQLKPEILVEALVPDF--RG------ 193 (349)
T ss_pred CCCChhhHHHHHHHHHH--cCCCEEEEEEcCCCCCCcccHHH----HHHHHHHHHHhCCCcEEEEeCccc--cC------
Confidence 46678888899999888 799888777775422 11111 124567888888888777764321 00
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
-.+.++..+++|.|++..-.-.+ +.+.....++.+++. |. .+..++.+. + --+
T Consensus 194 --d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi---~tkSg~MvG--L------GET 260 (349)
T PLN02428 194 --DLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGL---LTKTSIMLG--L------GET 260 (349)
T ss_pred --CHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC---eEEEeEEEe--c------CCC
Confidence 15568888899999876443221 334556677778887 77 555565554 2 146
Q ss_pred HHHHHHHHHHHHHCCCCEEEEc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLK 840 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~ 840 (1427)
.+.+.++++.+.+.|+|++.|.
T Consensus 261 ~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 261 DEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred HHHHHHHHHHHHHcCCCEEeec
Confidence 7888888888888898888653
No 483
>KOG2156|consensus
Probab=83.90 E-value=3.7 Score=50.34 Aligned_cols=65 Identities=22% Similarity=0.418 Sum_probs=48.0
Q ss_pred CCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC
Q psy15244 184 VPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP 262 (1427)
Q Consensus 184 Vpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg 262 (1427)
++.-|.++....+.+++.+.+++. .-=+||||...+-|.|+++++...++.. +.+++||+||+.+
T Consensus 280 f~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieRP 345 (662)
T KOG2156|consen 280 FGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIERP 345 (662)
T ss_pred cCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhcc
Confidence 444444445778889988887763 2228999999999999999999876542 4567888888755
No 484
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=83.83 E-value=77 Score=36.79 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC--CCCceeeeecccc-cccccCCCcc------
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI--PNIPFQMILRGNS-LVGYSNYSPA------ 753 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~--p~~~~qml~Rg~n-~vgy~~~~~n------ 753 (1427)
..+..+.+.+ .|++.||+| ....+.....+..++ +.++.+++.+ -+..+..++-+.. ...+.+..+.
T Consensus 18 ~~e~l~~~~~--~G~~~VEl~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~ 93 (279)
T TIGR00542 18 WLERLQLAKT--CGFDFVEMS-VDETDDRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGL 93 (279)
T ss_pred HHHHHHHHHH--cCCCEEEEe-cCCccchhhccCCCH-HHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHH
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccC------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 754 -EVGAFCRLASQAGIDIFRVFDPL------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 754 -vv~~~v~~a~~~Gid~~rif~~~------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+..++.|.+.|.+.++++..- +-++.++..++.|++.|. .+++- .-+.....+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-------~l~lE---~~~~~~~~t~~ 163 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-------TLAVE---IMDTPFMSSIS 163 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-------EEEEe---eCCCchhcCHH
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++++++.+ -.-..-.+-|+.-+..-.. .....++..- +--.|+|.+|..+ ......
T Consensus 164 ~~~~li~~v--~~~~v~~~~D~~h~~~~~~--~~~~~i~~~~-~~i~~vHikD~~~------------------~~~~~~ 220 (279)
T TIGR00542 164 KWLKWDHYL--NSPWFTLYPDIGNLSAWDN--DVQMELQLGI-DKIVAIHLKDTKP------------------GQFKDV 220 (279)
T ss_pred HHHHHHHHc--CCCceEEEeCcChhhhccC--CHHHHHHHhh-hhEEEEEeCCCCC------------------CccCCc
Q ss_pred CCCCCCCcHHHHHHHHHhCCCC
Q psy15244 901 SGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
-=+.|..+...++.+|+..|++
T Consensus 221 p~G~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 221 PFGEGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred CCCCCccCHHHHHHHHHHhCCc
No 485
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=83.83 E-value=39 Score=38.12 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=99.6
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
.-+..+++.|.+.|..-+.|. -+++...+ ++++.... ..+|... +.|.. ..+.+-=+.-++.+.+.
T Consensus 24 ~~I~~l~~eA~~~~f~avCV~--P~~V~~A~---~~l~g~~~------~~v~tVi--gFP~G-~~~t~~K~~Ea~~ai~~ 89 (228)
T COG0274 24 EDIARLCAEAKEYGFAAVCVN--PSYVPLAK---EALKGSTV------VRVCTVI--GFPLG-ANTTAVKAAEAREAIEN 89 (228)
T ss_pred HHHHHHHHHHHhhCceEEEEC--cchHHHHH---HHhccCCC------eEEEEec--CCCCC-CChHHHHHHHHHHHHHc
Confidence 346778999999996555443 33444333 33332211 2345553 35543 34455445567888899
Q ss_pred CCCEEEEccccCcCC---HHHHHHHHHHHHHHcCC-ce----EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 833 GAQVLCLKDMAGLLK---PTAAKLLIGSFREKYPN-IL----IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~---P~~~~~lv~~lr~~~p~-ip----i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
|||.|-+.=..|.++ .+.+++-|+++++..++ ++ |+.-.=++.-+ ...+..|++||||.|-+|..-- +
T Consensus 90 GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~A~~i~~~aGAdFVKTSTGf~---~ 165 (228)
T COG0274 90 GADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RKACEIAIEAGADFVKTSTGFS---A 165 (228)
T ss_pred CCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HHHHHHHHHhCCCEEEcCCCCC---C
Confidence 999887665556544 57788889999988865 23 34444445555 6677789999999999986332 7
Q ss_pred CCCcHHHHHHHHHhCCCCCCCC
Q psy15244 905 SQPAMGTIVSCLENTDKRCGID 926 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g~~tgid 926 (1427)
+++.+|.+-.+.+..|...|+.
T Consensus 166 ~gAT~edv~lM~~~vg~~vgvK 187 (228)
T COG0274 166 GGATVEDVKLMKETVGGRVGVK 187 (228)
T ss_pred CCCCHHHHHHHHHHhccCceee
Confidence 7888888877777655554443
No 486
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=83.77 E-value=16 Score=44.52 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
++++...+.+.+. -+.+.+.+.++.+++.+. .+-. +.++..+.++++.++++|+|.
T Consensus 103 ~aa~~~~e~~~~~-------~~p~l~~~ii~~vr~a~V---tvki--------------Rl~~~~~~e~a~~l~eAGad~ 158 (369)
T TIGR01304 103 AATRLLQELHAAP-------LKPELLGERIAEVRDSGV---ITAV--------------RVSPQNAREIAPIVVKAGADL 158 (369)
T ss_pred HHHHHHHHcCCCc-------cChHHHHHHHHHHHhcce---EEEE--------------ecCCcCHHHHHHHHHHCCCCE
Confidence 4556566666554 256778888888888764 2221 223357889999999999999
Q ss_pred EEEcccc-------CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 837 LCLKDMA-------GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 837 i~i~Dt~-------G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
|.|-.+. |-..|..+.+++ +++ ++||-. .+ ......++.++++|||.|.
T Consensus 159 I~ihgrt~~q~~~sg~~~p~~l~~~i----~~~-~IPVI~---G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 159 LVIQGTLVSAEHVSTSGEPLNLKEFI----GEL-DVPVIA---GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred EEEeccchhhhccCCCCCHHHHHHHH----HHC-CCCEEE---eC-CCCHHHHHHHHHcCCCEEE
Confidence 9986542 445676555444 345 688753 22 3335667888899999997
No 487
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.75 E-value=93 Score=36.10 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=112.6
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CC
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NI 733 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~ 733 (1427)
+=++.|.+--|+.+ ++.++.++.+ .+ .|++.||++.+. ++....-..-++ +.++.+++... +.
T Consensus 7 ~~~~~~~~~~~~~~--------~~~~e~~~~~---~~--~G~~~iEl~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~gl 71 (283)
T PRK13209 7 QIPLGIYEKALPAG--------ECWLEKLAIA---KT--AGFDFVEMSVDE-SDERLARLDWSR-EQRLALVNALVETGF 71 (283)
T ss_pred cccceeecccCCCC--------CCHHHHHHHH---HH--cCCCeEEEecCc-cccchhccCCCH-HHHHHHHHHHHHcCC
Confidence 33445555444433 4555555554 45 699999997532 111000011122 23445555443 33
Q ss_pred ceeeeeccccc-ccccCCCcc-------hHHHHHHHHHhcCCCEEEEeccCC--------h----HHHHHHHHHHHHHhc
Q psy15244 734 PFQMILRGNSL-VGYSNYSPA-------EVGAFCRLASQAGIDIFRVFDPLN--------S----VPNLVKGMDAVQQVT 793 (1427)
Q Consensus 734 ~~qml~Rg~n~-vgy~~~~~n-------vv~~~v~~a~~~Gid~~rif~~~n--------d----~~~~~~~i~~a~~~G 793 (1427)
.+.+++-+... ..+..-.+. ..+..++.|.+.|++.+++..... + ++.++..++.+++.|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G 151 (283)
T PRK13209 72 RVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRAS 151 (283)
T ss_pred ceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34333211110 011111111 245667888899999998753221 0 346677788888888
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ccccCcCCHHHHHHHHHHHHHHcCCceEEEeec
Q psy15244 794 GGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL-KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTH 872 (1427)
Q Consensus 794 ~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i-~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~H 872 (1427)
. .+ ++-- .+.....+.+...++++.+ +-..+.+ -|+.=+..-. ......++. ..+--.++|.+
T Consensus 152 V---~i----~iE~---~~~~~~~~~~~~~~ll~~v---~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHik 215 (283)
T PRK13209 152 V---TL----AFEI---MDTPFMNSISKALGYAHYL---NSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVK 215 (283)
T ss_pred C---EE----EEee---cCCcccCCHHHHHHHHHHh---CCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEec
Confidence 7 22 2221 1112234666666666554 4344444 3654332110 012233432 33556799999
Q ss_pred CCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 873 nd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
|..+- +-+. ..+ +.|..+...++.+|+..|++-.+-+
T Consensus 216 D~~~~-----------~~~~-----~~~--G~G~id~~~i~~~L~~~gy~g~~~~ 252 (283)
T PRK13209 216 DTKPG-----------VFKN-----VPF--GEGVVDFERCFKTLKQSGYCGPYLI 252 (283)
T ss_pred cCCCC-----------CCce-----eCC--CCCccCHHHHHHHHHHcCCCceEEE
Confidence 97531 1111 123 3467889999999999887654444
No 488
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=83.65 E-value=2 Score=50.35 Aligned_cols=67 Identities=27% Similarity=0.358 Sum_probs=55.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEE--EEEEcCC-c-eeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVL--IVMSVMK-T-ETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l--~~ieamK-m-e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
....+.||..| ++...++.||.|++||+| ..+-+.- - ..+|+||.+|+|. .....-.|..|+.|+.+
T Consensus 219 ~~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 219 DPEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKV 289 (292)
T ss_dssp GCCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEE
T ss_pred cceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEE
Confidence 45678999999 778999999999999999 6554433 3 3589999999984 67788899999999876
No 489
>PLN02433 uroporphyrinogen decarboxylase
Probab=83.57 E-value=4.9 Score=48.52 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEcc-ccCcCCHHHHH--------HHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 820 NYYEDLAKQLVESGAQVLCLKD-MAGLLKPTAAK--------LLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~~~--------~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
+...++++...++||+.+.|.| ++|++.|+... ++++.+++..|++++-+|.+.+. ...-.-.+.|+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~ 254 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC
Confidence 3456777777889999999999 66677777654 34456666555678899988774 12223345688
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
+.+..--. .++++....+.
T Consensus 255 ~~i~~d~~--------~dl~e~~~~~g 273 (345)
T PLN02433 255 DVIGLDWT--------VDMADARRRLG 273 (345)
T ss_pred CEEEcCCC--------CCHHHHHHHhC
Confidence 87753221 56666655554
No 490
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=83.53 E-value=9.4 Score=44.76 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-Ecccc-CcCCHHHHHHHHHHH
Q psy15244 781 NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC-LKDMA-GLLKPTAAKLLIGSF 858 (1427)
Q Consensus 781 ~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~-G~l~P~~~~~lv~~l 858 (1427)
+|+..++.|++.|+ -+ + ++. -++.+.+..+++.+++.++..|- +.... -.+....+..++..+
T Consensus 5 ~~k~iL~~A~~~~y---AV-~--AfN---------~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~ 69 (286)
T PRK12738 5 STKYLLQDAQANGY---AV-P--AFN---------IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAY 69 (286)
T ss_pred cHHHHHHHHHHCCc---eE-E--EEE---------eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHH
Confidence 46778888998887 22 2 333 47889999999999999887543 32211 123345677888888
Q ss_pred HHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE--EEecc
Q psy15244 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGADI--VDVAA 897 (1427)
Q Consensus 859 r~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~--VD~av 897 (1427)
.++. ++|+.+|. |.|........|+++|.+- +|+|-
T Consensus 70 a~~~-~VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~ 107 (286)
T PRK12738 70 STTY-NMPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSH 107 (286)
T ss_pred HHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCC
Confidence 8888 89988776 5566788999999999985 56554
No 491
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=83.52 E-value=1.3 Score=53.05 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=31.1
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.|+.+|+|++++|++||.|++||+|++|+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEC
Confidence 567999999999999999999999999999986
No 492
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.51 E-value=12 Score=41.47 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=97.7
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.|.+ .|+..+|+.- -.++..+-++.+++..|+..+..- .| -+ .+
T Consensus 17 ~~~~~a~~~~~al~~--gGi~~iEiT~----------~t~~a~~~I~~l~~~~p~~~vGAG-----TV------~~--~e 71 (196)
T PF01081_consen 17 DDPEDAVPIAEALIE--GGIRAIEITL----------RTPNALEAIEALRKEFPDLLVGAG-----TV------LT--AE 71 (196)
T ss_dssp SSGGGHHHHHHHHHH--TT--EEEEET----------TSTTHHHHHHHHHHHHTTSEEEEE-----S--------S--HH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEec----------CCccHHHHHHHHHHHCCCCeeEEE-----ec------cC--HH
Confidence 456889999999998 8999999852 245677888999999997654431 11 11 23
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
-++.|.++|.+.+- .+.- -.+.++++++.+. ..-.. ..|+.. +.++.++|++.+
T Consensus 72 ~a~~a~~aGA~Fiv--SP~~----~~~v~~~~~~~~i---~~iPG-------------~~TptE----i~~A~~~G~~~v 125 (196)
T PF01081_consen 72 QAEAAIAAGAQFIV--SPGF----DPEVIEYAREYGI---PYIPG-------------VMTPTE----IMQALEAGADIV 125 (196)
T ss_dssp HHHHHHHHT-SEEE--ESS------HHHHHHHHHHTS---EEEEE-------------ESSHHH----HHHHHHTT-SEE
T ss_pred HHHHHHHcCCCEEE--CCCC----CHHHHHHHHHcCC---cccCC-------------cCCHHH----HHHHHHCCCCEE
Confidence 48899999998742 2222 2445677888898 33322 133333 335668999988
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
-+- -++.+- -...+++|+.-+|++++- -+-|....|+-.=+++|+..+
T Consensus 126 K~F-PA~~~G---G~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 126 KLF-PAGALG---GPSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp EET-TTTTTT---HHHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred EEe-cchhcC---cHHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence 764 122222 245788888888888764 345666778888889997655
No 493
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.47 E-value=46 Score=42.54 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=79.5
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
|....|. .++.+...+.++...+.|++.|-+-.+...-... ..++.+.+.+. .+..+ .++ +...+
T Consensus 15 G~Q~~g~-~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~-~~v~~i~~~~~---~~~i~-a~~---------r~~~~ 79 (513)
T PRK00915 15 GEQSPGA-SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDF-EAVKRIARTVK---NSTVC-GLA---------RAVKK 79 (513)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHH-HHHHHHHhhCC---CCEEE-EEc---------cCCHH
Confidence 3334444 4555557778888889999999996644322221 22333333333 11111 111 33445
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCc--------CCHHH----HHHHHHHHHHHcCCceEEEeecC----CcchHHHHHHH
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGL--------LKPTA----AKLLIGSFREKYPNILIHVHTHD----MAGTGVATTLA 884 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~--------l~P~~----~~~lv~~lr~~~p~ipi~~H~Hn----d~GlA~An~la 884 (1427)
.+...++.+.++|+++|.+...+.- .++++ +.+.|+.+|+. +..+.|.+=| +....+..+-+
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r~d~~~l~~~~~~ 157 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATRTDLDFLCRVVEA 157 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCHHHHHHHHHH
Confidence 5555666677889999888765521 22333 34556666655 4566676633 34556667778
Q ss_pred HHHhcCCEEE
Q psy15244 885 CVKAGADIVD 894 (1427)
Q Consensus 885 Ai~AGad~VD 894 (1427)
+.++||+.|.
T Consensus 158 ~~~~Ga~~i~ 167 (513)
T PRK00915 158 AIDAGATTIN 167 (513)
T ss_pred HHHcCCCEEE
Confidence 8899999874
No 494
>PLN02334 ribulose-phosphate 3-epimerase
Probab=83.46 E-value=86 Score=35.51 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccCh--HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 682 DLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECP--WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p--~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+..+.++.+.+ .|+..+-+ -.+. |...-- .+.++.+++. ++..+...+-- +.| ..
T Consensus 21 ~l~~~l~~~~~--~g~~~ihld~~d~~-------f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv-------~~p----~d 79 (229)
T PLN02334 21 NLAEEAKRVLD--AGADWLHVDVMDGH-------FVPNLTIGPPVVKALRKH-TDAPLDCHLMV-------TNP----ED 79 (229)
T ss_pred HHHHHHHHHHH--cCCCEEEEecccCC-------cCCccccCHHHHHHHHhc-CCCcEEEEecc-------CCH----HH
Confidence 45555666666 57776654 1111 111111 2567777766 55543333211 112 34
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC-CCE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG-AQV 836 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G-ad~ 836 (1427)
+++.+.++|.|.+-+-.....-+.....++.++..|. .+..++ +| +++ .+.++.+.+.| +|.
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~---~iGls~-------~~----~t~---~~~~~~~~~~~~~Dy 142 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGM---KAGVVL-------NP----GTP---VEAVEPVVEKGLVDM 142 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCC---eEEEEE-------CC----CCC---HHHHHHHHhccCCCE
Confidence 6888899999998333331011345677788888887 554432 22 121 13344555554 897
Q ss_pred EEE---c-cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHH
Q psy15244 837 LCL---K-DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTI 912 (1427)
Q Consensus 837 i~i---~-Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~v 912 (1427)
|.+ - .+.|-..+....+.++.+++..+++||.+ +-|.-..|.-..+++|||.|=+. + .-.+.++.++.
T Consensus 143 i~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vvvg-s---ai~~~~d~~~~ 214 (229)
T PLN02334 143 VLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIVAG-S---AVFGAPDYAEV 214 (229)
T ss_pred EEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEEEC-h---HHhCCCCHHHH
Confidence 733 2 23343344566677888888766677655 44777889999999999998333 1 23344555555
Q ss_pred HHHHH
Q psy15244 913 VSCLE 917 (1427)
Q Consensus 913 v~~L~ 917 (1427)
+..|+
T Consensus 215 ~~~l~ 219 (229)
T PLN02334 215 ISGLR 219 (229)
T ss_pred HHHHH
Confidence 54443
No 495
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.37 E-value=1 Score=56.34 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.+-.+-...|..+..|.... | .++.+|+|.+|+|++||.|++||+|+.|+
T Consensus 41 ~~~~~~v~a~G~v~p~~~~~~-v---------q~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 41 AKKEIVIRTTGTIEPAKILSK-I---------QSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EeeeEEEEEeEEEEecCceEE-E---------EcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 344445555555555555322 2 35788999999999999999999999986
No 496
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=83.37 E-value=9.4 Score=45.71 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..+.++.+.++|++.|.| |++. ..+....++|+.+|+.+|+++|.+ +|- .....+..++++|||.|.+.+
T Consensus 95 ~~~~~~~l~eagv~~I~v-d~~~-G~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 95 DKERAEALVEAGVDVIVI-DSAH-GHSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 456788889999998876 3332 244678889999999998888876 222 334666888999999998754
No 497
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=83.36 E-value=22 Score=44.34 Aligned_cols=120 Identities=12% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHH-----HHCC----CCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQL-----VESG----AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK 887 (1427)
Q Consensus 817 ~~~~~~~~~a~~l-----~~~G----ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~ 887 (1427)
.+.+.+.+.++.+ ...| ||.|+|....| .|+.+...|+.+++.. ++||.+-+-| ...+.+|++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~-dvPLSIDT~d-----pevleaAle 173 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETT-DLPLILCSED-----PAVLKAALE 173 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhc-CCCEEEeCCC-----HHHHHHHHH
Confidence 4556777777766 4445 99999999988 8999999999999887 8999998744 567789999
Q ss_pred hcCC---EEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccccc
Q psy15244 888 AGAD---IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954 (1427)
Q Consensus 888 AGad---~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~ 954 (1427)
+|++ .|.+.- .-++++++......+....+....+..+.+.+++....-+ ..+++--
T Consensus 174 agad~~plI~Sat--------~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI--~dIILDP 233 (450)
T PRK04165 174 VVADRKPLLYAAT--------KENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGI--KDLVLDP 233 (450)
T ss_pred hcCCCCceEEecC--------cchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCC--CcEEECC
Confidence 9998 443321 1356677766666543322211113334444444433333 4555533
No 498
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=83.16 E-value=39 Score=40.41 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=81.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++.++++.+.+ .|+..|-+.||-- +++.+-.+-++.+++..+...+.+...|. ..
T Consensus 47 ~~ls~eei~~~i~~~~~--~gi~~I~~tGGEP------ll~~~l~~li~~i~~~~~~~~i~itTNG~-----------ll 107 (331)
T PRK00164 47 ELLSLEEIERLVRAFVA--LGVRKVRLTGGEP------LLRKDLEDIIAALAALPGIRDLALTTNGY-----------LL 107 (331)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEECCCC------cCccCHHHHHHHHHhcCCCceEEEEcCch-----------hH
Confidence 35889999999998887 6999999888753 34555445556665542223344433331 12
Q ss_pred HHHHHHHHhcCCCEEEEec-cCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFD-PLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~-~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.++++...++|++.+.|.. +++ .++.+.++++.+++.|.. .+....... + ..+.+.+.
T Consensus 108 ~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~--~v~i~~vv~-----~---g~n~~ei~ 177 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLT--PVKVNAVLM-----K---GVNDDEIP 177 (331)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCC--cEEEEEEEE-----C---CCCHHHHH
Confidence 3457777889999877764 322 245666777777777751 222222211 1 24556777
Q ss_pred HHHHHHHHCCCCE
Q psy15244 824 DLAKQLVESGAQV 836 (1427)
Q Consensus 824 ~~a~~l~~~Gad~ 836 (1427)
++++.+.+.|++.
T Consensus 178 ~l~~~~~~~gv~v 190 (331)
T PRK00164 178 DLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHHHhCCCeE
Confidence 7888788888763
No 499
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=83.11 E-value=76 Score=37.68 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc-CCHHHHHHHHHHHHHHcCCceEEEee---c------CCcchHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL-LKPTAAKLLIGSFREKYPNILIHVHT---H------DMAGTGVATTLAC 885 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~lv~~lr~~~p~ipi~~H~---H------nd~GlA~An~laA 885 (1427)
..+++.+++.++++.+.|++.|+|.+-... ..++.+.++++.+|+..|++. +|+ + ...|+...-.++.
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~--~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVH--IHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999842222 455778999999999975444 332 1 2355555555544
Q ss_pred H-HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHH
Q psy15244 886 V-KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDY 964 (1427)
Q Consensus 886 i-~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~ 964 (1427)
+ +||++.+. +.| .|.+-..+...-...+...+...++.+...+ .|+++. ..-++|-+--....-.|
T Consensus 113 LkeAGl~~i~----~~g-------~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~-~Gi~~~-s~~iiG~~Et~ed~~~~ 179 (309)
T TIGR00423 113 LKKAGLDSMP----GTG-------AEILDDSVRRKICPNKLSSDEWLEVIKTAHR-LGIPTT-ATMMFGHVENPEHRVEH 179 (309)
T ss_pred HHHcCCCcCC----CCc-------chhcCHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCCce-eeEEecCCCCHHHHHHH
Confidence 4 58998774 111 1222111111111112233333333333322 244333 22355544211222233
Q ss_pred HHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHHH
Q psy15244 965 SSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVAD 1043 (1427)
Q Consensus 965 ~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~ 1043 (1427)
...+.+....+..|. .-+-+- ..+|+- -+..+ ..-.....|.++.++-.|-.|..++.++-+--..|.
T Consensus 180 l~~lr~l~~~~~~f~--------~fiP~~f~~~~t~--~l~~~-~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~~~l~~ 248 (309)
T TIGR00423 180 LLRIRKIQEKTGGFT--------EFIPLPFQPENNP--YLEGE-VRKGASGIDDLKVIAISRILLNNIRNIQASWVKLGL 248 (309)
T ss_pred HHHHHhhchhhCCee--------eEEeeeecCCCCh--hhccC-CCCCCCHHHHHHHHHHHHHhcCCCccceecchhcCH
Confidence 333333332333332 111111 113321 01100 001237788999999999999877766665544443
Q ss_pred H-HHHHHH---cCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhC
Q psy15244 1044 L-AIFMTQ---EKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLD 1096 (1427)
Q Consensus 1044 ~-a~~~v~---~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~ 1096 (1427)
. ++.... |++.+ + ..+++ +.=..| -+.|++.=++++.+.+-+
T Consensus 249 ~~~~~~l~~Gand~~g--------t-~~~e~-v~~~ag-~~~~~~~~~~~l~~~~~~ 294 (309)
T TIGR00423 249 KLAQVALEFGANDLGG--------T-LMEEN-ISKAAG-AKSGVGLTVEELIEAIKD 294 (309)
T ss_pred HHHHHHHhCCCccCCc--------c-cccce-eccccC-CCCCCCCCHHHHHHHHHH
Confidence 2 333333 33332 1 23333 222334 234445556677665543
No 500
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=82.90 E-value=12 Score=44.33 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCc--CCHHHHHHHHHHH
Q psy15244 781 NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGL--LKPTAAKLLIGSF 858 (1427)
Q Consensus 781 ~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~--l~P~~~~~lv~~l 858 (1427)
++++.++.|++.++ +.-+|. .++.+.+..+++.+++.+...|--...... +-...+..+++.+
T Consensus 4 ~~k~lL~~A~~~~y------aV~AfN---------~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ 68 (307)
T PRK05835 4 KGNEILLKAHKEGY------GVGAFN---------FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIM 68 (307)
T ss_pred CHHHHHHHHHHCCc------eEEEEE---------ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHH
Q ss_pred HHHcCCceEEEeecCCcchHHHHHHHHHHhcCC--EEEeccccC
Q psy15244 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGAD--IVDVAADSM 900 (1427)
Q Consensus 859 r~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad--~VD~av~Gm 900 (1427)
.+..+.+|+.+|. |.|.-......|+++|.+ ++|+|-.++
T Consensus 69 a~~~~~VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ 110 (307)
T PRK05835 69 CERYPHIPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAF 110 (307)
T ss_pred HHhcCCCeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Done!