RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15244
(1427 letters)
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 1378 bits (3569), Expect = 0.0
Identities = 466/1211 (38%), Positives = 661/1211 (54%), Gaps = 171/1211 (14%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K ++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
+YLNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV
Sbjct: 62 SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVK 121
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR A+KAD+P+IPGT P+ + KEF +E FP+++KA GGGG+GMR+V + +E
Sbjct: 122 ARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELE 181
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
+ F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKV 241
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
+++AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D F+FIEVNPR+QVEHT
Sbjct: 242 VEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSG-DEFFFIEVNPRVQVEHT 300
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPKRNFQPST 411
++E +TGID+V++QI +A G L + Q+ IT G AIQC + TEDP +F P T
Sbjct: 301 ITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDT 360
Query: 412 GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQ 471
G + + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E +
Sbjct: 361 GTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420
Query: 472 VSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531
+ GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +
Sbjct: 421 IRGVKTNIPFLINVMKNKKFTSGDY-TTKFIEETPELFDIQPSLD-RGTKTLEYIGNVTI 478
Query: 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQAN 591
NG KP I K +
Sbjct: 479 NGFPNVEK-RPKPDYELASI----------------------------PTVSSSKIASFS 509
Query: 592 GYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVN 651
G ++LL +G V+K V
Sbjct: 510 GTKQLLDEVGPKGVAEWVKKQDDV------------------------------------ 533
Query: 652 SVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC 711
LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 534 --------LLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVA 585
Query: 712 LKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR
Sbjct: 586 YNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFR 645
Query: 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-KKYSLNYYEDLAKQLV 830
+FD LN V + +AVQ+ G I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 646 IFDSLNWVDQMKVANEAVQE-AGK--ISEGTICYTGDILNPERSNIYTLEYYVKLAKELE 702
Query: 831 ESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG
Sbjct: 703 REGFHILAIKDMAGLLKPKAAYELIGELKSA-VDLPIHLHTHDTSGNGLLTYKQAIDAGV 761
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
DI+D A SMSG+ SQP+ ++ L +
Sbjct: 762 DIIDTAVASMSGLTSQPSANSLYYALNGFPR----------------------------- 792
Query: 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF 1010
D+ + S YW VR Y+ FE D+K+ ++E Y +E+PGGQY+NL + S
Sbjct: 793 --HLRTDIEGMESLSHYWSTVRTYYSDFES-DIKSPNTEIYQHEMPGGQYSNLSQQAKSL 849
Query: 1011 GLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFP 1068
GL F++VK YR NFL GDI+K PSSKVV D+A++M Q L + V+ + K+ FP
Sbjct: 850 GLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFP 909
Query: 1069 KSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKL 1128
+SV FF+G IG+P GF K LQ +L + R E+
Sbjct: 910 ESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALT-ARPGEYLE----------------- 951
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAE---FDPIMACDCRENEPVKMNELI 1185
PVD F + E P+ D ++ ++
Sbjct: 952 -----------------PVD-------FEKVRELLEEEQQGPVTEQDI-------ISYVL 980
Query: 1186 FPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDH 1245
+PK +++++ R+++G + L T F G GE E G + +ISE +++
Sbjct: 981 YPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISE-PDEN 1039
Query: 1246 GERTVFFLYNG 1256
G RT+++ NG
Sbjct: 1040 GNRTIYYAMNG 1050
Score = 169 bits (431), Expect = 1e-42
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNK 1342
F G GE E G + +ISE +++G RT+++ NGQ R + D+N
Sbjct: 1004 PTFFFGMRNGETVEIEIDKGKRLIIKLETISE-PDENGNRTIYYAMNGQARRIYIKDENV 1062
Query: 1343 AKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASAD 1402
++ KAD IGA MPG++ EVKV VG+ VK N L++ MK ET I A D
Sbjct: 1063 HTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFD 1122
Query: 1403 GVVKEIFVEVGGQVAQNDLVVVLD 1426
GV+K++ V G +A DL++ ++
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 1367 bits (3539), Expect = 0.0
Identities = 452/1215 (37%), Positives = 642/1215 (52%), Gaps = 172/1215 (14%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG----- 109
+ KIL+ANRSE+AIRV RA NE+GIK+V I++E+DK + HR K D+++ VG+G
Sbjct: 12 GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLAR 71
Query: 110 -MPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKT 168
+ P+ +YL+I E+I +AK + DAIHPGYG LSE +F A AG+ FIGP + ++
Sbjct: 72 DLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQ 131
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
LG+KV AR+ A+ VP++P T D+ +V + + +PV+LKA++GGGGRGMR++
Sbjct: 132 LGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIR 191
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
++ + + A+ EA+A+FGKD++ +EK ++R RH+E QILGD +G+VVHL+ERDCS+Q
Sbjct: 192 SEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ 251
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD-NFYFIEVNP 347
RR QKV++ APA +S + R + S+++A + Y AGTVE+L+D D FYFIEVNP
Sbjct: 252 RRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 311
Query: 348 RLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPK 404
R+QVEHT++E +TGID+V++QI I G ++ QE I G A+QC + TEDP+
Sbjct: 312 RIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPE 371
Query: 405 RNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMR 464
NF P GR+ + + GIR+D Y G I+ YD LL K+ + +M
Sbjct: 372 HNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMD 431
Query: 465 RALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILR 524
RAL E ++ GV TNL FL + KF T FID P+L ++ Q R K+L
Sbjct: 432 RALREFRIRGVATNLTFLEAIIGHPKFRDNSY-TTRFIDTTPELFQQVKRQD-RATKLLT 489
Query: 525 FIGETLVNG-PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKY 583
++ + VNG P PV+ Y
Sbjct: 490 YLADVTVNGHPEAKDRPKPLENAARPVVP------------------------------Y 519
Query: 584 LIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVM 643
+G ++LL +G +F +R K V
Sbjct: 520 ANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRV---------------------------- 551
Query: 644 MGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW 703
LLTDTT RD HQSLLATR+RTYD+ +++ ++ NL SLE W
Sbjct: 552 ----------------LLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECW 595
Query: 704 GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLAS 763
GGA ++FL E PWERLA +RE PN+ QM+LRG + VGY+NY V F R A+
Sbjct: 596 GGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAA 655
Query: 764 QAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823
+ GID+FRVFD LN V N+ MDA+ + + EA ICY GD+ N + KY L YY
Sbjct: 656 KGGIDLFRVFDCLNWVENMRVSMDAIAE-ENK--LCEAAICYTGDILNSARPKYDLKYYT 712
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+LA +L ++GA ++ +KDMAGLLKP AAK+L + RE + IH HTHD +G AT L
Sbjct: 713 NLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREA-TGLPIHFHTHDTSGIAAATVL 771
Query: 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943
A V+AG D VD A D++SG SQP +G+IV L +++
Sbjct: 772 AAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSER---------------------- 809
Query: 944 YAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNL 1003
G+D + S YW VR YA FE DLK +SE YL+E+PGGQ+TNL
Sbjct: 810 ---------DPGLDPAWIRRISFYWEAVRNQYAAFES-DLKGPASEVYLHEMPGGQFTNL 859
Query: 1004 KFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMEN 1061
K + S GL+ + V +AY AN + GDI+K TPSSKVV D+A+ M + L+ DV+
Sbjct: 860 KEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSP 919
Query: 1062 ADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDE 1121
++ FP+SV +G +G+P G+P+ LQ+K L + R
Sbjct: 920 DREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKG-EKPYTVRPGSLLK---------- 968
Query: 1122 PFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKM 1181
D A + + + + + E
Sbjct: 969 ------------------------EAD-------LDAE--RKVIEKKLEREVSDFEFA-- 993
Query: 1182 NELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEH 1241
+ L++PK F D +GPV LPT + G GEE + + G T + ++S
Sbjct: 994 SYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSA- 1052
Query: 1242 LNDHGERTVFFLYNG 1256
+ G TVFF NG
Sbjct: 1053 TDSQGMVTVFFELNG 1067
Score = 165 bits (419), Expect = 3e-41
Identities = 53/144 (36%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKN- 1341
+ G GEE + + G T + ++S + G TVFF NGQ R + D+
Sbjct: 1021 PAYFYGLADGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAH 1079
Query: 1342 KAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASA 1401
A +R KA+ A +GAPMPG I V V GQ V DVL+ + MK ET IHA
Sbjct: 1080 GATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEK 1139
Query: 1402 DGVVKEIFVEVGGQVAQNDLVVVL 1425
DG + E+ V+ G Q+ DL+ V
Sbjct: 1140 DGTIAEVLVKAGDQIDAKDLLAVY 1163
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 738 bits (1909), Expect = 0.0
Identities = 241/459 (52%), Positives = 320/459 (69%), Gaps = 5/459 (1%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + K+L+ANR E+AIRV RAC E+GI++V IYS++D S HR K D+A+LVG+G P+
Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYL+I II IAK ++VDAIHPGYGFLSE FAK G+ FIGP N L GDKV
Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVK 123
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+ A +P+IPG+ PV ++ V F + +P+I+KAA GGGGRGMR+V +K ++
Sbjct: 124 ARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVK 183
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA+SEA A+FG D++ VEK I+ P+HIEVQILGD G++VHLYERDCS+QRR+QKV
Sbjct: 184 EAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKV 243
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
+++AP+ +S +R I E +V+L +S+GY NAGTVEFL+ D FYFIEVNPR+QVEHT
Sbjct: 244 VEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQVEHT 302
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPKRNFQPST 411
++E ITGID+VQSQI IA G SL + QE I G AIQ + TEDP NF P T
Sbjct: 303 ITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDT 362
Query: 412 GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQ 471
G++ + G+R+D+ + G I+P YDSLL K+ T++ + KM R L E +
Sbjct: 363 GKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFR 422
Query: 472 VSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
+ G+ TN+PFL NV KFLSGE +T+FID P+L
Sbjct: 423 IRGIKTNIPFLENVVQHPKFLSGEY-DTSFIDTTPELFV 460
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin,
disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 679 bits (1755), Expect = 0.0
Identities = 297/770 (38%), Positives = 399/770 (51%), Gaps = 159/770 (20%)
Query: 490 KFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDP 549
SG + +D+NP+L + Q R K+L ++G +VNGP TP+ V P DP
Sbjct: 9 HHSSGLVPRGSHMDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTTPIPVKASPSPTDP 67
Query: 550 VIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTV 609
V+ + P G+R +L G F
Sbjct: 68 VVPA------------------------------VPIGPPPAGFRDILLREGPEGF---- 93
Query: 610 RKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDA 669
+VR +LL DTTFRDA
Sbjct: 94 ----------------------------------------ARAVRNHPGLLLMDTTFRDA 113
Query: 670 HQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL 729
HQSLLATRVRT+DLKK++P+VA+ F+ L+S+E WGGA ++FL ECPW RL ELREL
Sbjct: 114 HQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELREL 173
Query: 730 IPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAV 789
IPNIPFQM+LRG + VGY+NY V FC +A + G+D+FRVFD LN +PN++ GM+A
Sbjct: 174 IPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAA 233
Query: 790 QQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPT 849
GG +VEA I Y GD+ +P++ KYSL YY LA++LV +G +LC+KDMAGLLKPT
Sbjct: 234 GS-AGG--VVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPT 290
Query: 850 AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909
A +L+ S R+++P++ +H+HTHD +G GVA LAC +AGAD+VDVAADSMSG+ SQP+M
Sbjct: 291 ACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSM 350
Query: 910 GTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWR 969
G +V+C T + + V DYS YW
Sbjct: 351 GALVACTRGTP-------------------------------LDTEVPMERVFDYSEYWE 379
Query: 970 KVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANF 1026
R LYA F+C +K+ +S+ Y EIPGGQYTNL F+ S GL F++VK+AY AN
Sbjct: 380 GARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQ 439
Query: 1027 LLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGF 1086
+LGD+IK TPSSK+V DLA FM Q LS + A+++ FP+SV EF QG IG P+ GF
Sbjct: 440 MLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGF 499
Query: 1087 PKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGP 1146
P+ + KVL L + + R P
Sbjct: 500 PEPFRSKVLKDLP-----------RV---EGR---------------------------P 518
Query: 1147 VDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKL 1206
LP + E + E V ++ ++P F F FGP+D L
Sbjct: 519 GASLPPLDL---QALEKELVDRHGEEVTP-EDV-LSAAMYPDVFAHFKDFTATFGPLDSL 573
Query: 1207 PTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1256
TR+FL GP I EEF E + G T ++ L++S+ LN G+R VFF NG
Sbjct: 574 NTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNG 622
Score = 155 bits (393), Expect = 7e-39
Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
Query: 1280 LRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL- 1338
L + R+FL GP I EEF E + G T ++ L++S+ LN G+R VFF NGQLRS+
Sbjct: 570 LDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLRSIL 628
Query: 1339 --DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETL 1396
D K++ KA D G+IGAPMPG +I++KV G +V K L V+S MK ET+
Sbjct: 629 VKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETV 688
Query: 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
+ + +G V+++ V + +DL++ ++
Sbjct: 689 VTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 654 bits (1689), Expect = 0.0
Identities = 195/454 (42%), Positives = 307/454 (67%), Gaps = 7/454 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ K+L+ANR E+A+R+ RAC E+GI +V IY+E + + H D+A+++G P+ Y
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGT--DPLDTY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LN II +A DAIHPGYGFL+E +FAK AG+ FIGP V++ +GDK ++
Sbjct: 60 LNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+ KA VP++PG+ + +++ K E+ +PV+LKA GGGGRG+R+ N++ + +N
Sbjct: 120 EVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKN 179
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+++A EA +FG+ D+L+EK+I+ P+HIE Q+LGDK+G+V+HL ERDCS+QRR QK+++
Sbjct: 180 YEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVE 239
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAP+ ++ R+ + AK +GY NAGT+EF+ D++ N YFIE+N R+QVEH +S
Sbjct: 240 IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVS 299
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E +TGID+V+ QIKIA G+ L + QE + G AI+C + EDPK+NF PST ++
Sbjct: 300 EMVTGIDIVKWQIKIAAGE---PLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIER 356
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ P GIRV+ + G +++P YDS++AK+I T+ + E+MR ALE +++GV
Sbjct: 357 YYVPGGFGIRVEHAA-ARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVK 415
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T +P L+N+ +K F +G+ T +++++P++ E
Sbjct: 416 TTIPLLINIMKEKDFKAGK-FTTKYLEEHPEVFE 448
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 632 bits (1634), Expect = 0.0
Identities = 187/455 (41%), Positives = 294/455 (64%), Gaps = 7/455 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
M+K+LIANR E+A+R+ RAC ++GI++V IYSE DK + H D+A+ VG +Y
Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPT-LSKDSY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP I+ IA + D +HPGYGFL+E DFA+ L+FIGP+ ++ +G K +A+
Sbjct: 60 LNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+KA+VP++PG+ + DV + K+ ++ +PVI+KA GGGG+G+R+ ++ +E
Sbjct: 120 AEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETG 179
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ + EA +FG + +EK+I+ RHIE+QI+GD YG+V+HL ERDC++QRR QK+++
Sbjct: 180 FRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVE 239
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTL 355
AP+ + R + +VR AK++ Y NAGT+EF+ D D+ FYF+E+N R+QVEH +
Sbjct: 240 EAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E +TGID+V+ Q+++A G L QE I G AI+ + E+P +NF PS G+++
Sbjct: 300 TEMVTGIDLVKLQLQVAMGD---VLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIE 356
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
+ P G+R++S+C Y I P YDS++AK+I+H T + RAL E V G+
Sbjct: 357 QYLAPGGYGVRIESAC-YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGI 415
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T +PF + + ++ F SG+ TNF++ N + +
Sbjct: 416 DTTIPFHIKLLNNDIFRSGK-FNTNFLEQNSIMND 449
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 628 bits (1622), Expect = 0.0
Identities = 186/449 (41%), Positives = 284/449 (63%), Gaps = 8/449 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++ ILIANR E+A+R R EMG K++ +YSE DK + + D + +GK +Y
Sbjct: 6 IKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKA-RSSESY 64
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ DAI PGYGFLSE ++F + ++FIGP+ + + DK A+
Sbjct: 65 LNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAK 124
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+A VP+IPG+ + + K+ E+ +PVILKAA GGGGRGMR+V N+ +E+
Sbjct: 125 QVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKA 184
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ A+SEA+ +FG M +EKYI PRHIEVQ++GD +G+V+H+ ERDCSMQRR+QK+I+
Sbjct: 185 YWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIE 244
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+PA + R + ET+++ AK++GY AGT EFL+DK+ +FYFIE+N RLQVEH +S
Sbjct: 245 ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQVEHCVS 304
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ++GID+++ IK+A+G +L QE I G +I+C + ED K F PS G++
Sbjct: 305 EMVSGIDIIEQMIKVAEGYALPS----QESIKLNGHSIECRITAEDSK-TFLPSPGKITK 359
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ PA +R++S C Y + YDS++ K++V + KM+ AL+E +SG+
Sbjct: 360 YIPPAGRNVRMESHC-YQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIK 418
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDN 505
T F L++ ++ F++ +TN++ +
Sbjct: 419 TTKDFHLSMMENPDFINNN-YDTNYLARH 446
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 614 bits (1586), Expect = 0.0
Identities = 180/450 (40%), Positives = 279/450 (62%), Gaps = 9/450 (2%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPV-TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
A KA VP +PG+ P+ D+DK + + +PVI+KA+ GGGGRGMR+V + +
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 181 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L + QE++ +G A++C + EDP F PS G++
Sbjct: 300 TEMITGVDLIKEQLRIAAGQ---PLSIKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 356 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDN 505
TN+ + + +D+ F G ++++
Sbjct: 415 KTNVDLQIRIMNDENFQHGG-TNIHYLEKK 443
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 593 bits (1531), Expect = 0.0
Identities = 187/474 (39%), Positives = 287/474 (60%), Gaps = 27/474 (5%)
Query: 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL 117
KILIANR E+A RV + +MGI +V IYS+ DK + H D+A +G P +Y+
Sbjct: 3 NKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIG-PPPANQSYI 61
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
I +++ + A+HPGYGFLSE FA+A+ G+ F+GP ++ +GDK+ ++
Sbjct: 62 VIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKK 121
Query: 178 AALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENF 237
A +A+V +PG + D D+ + +++ +PV++KA+ GGGG+GMR+ N E F
Sbjct: 122 IAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGF 181
Query: 238 KRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297
+ +++EA SFG D + +EK++ +PRHIE+Q+L D +G+ ++L ER+CS+QRR QKV++
Sbjct: 182 QSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEE 241
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357
AP+ + + R A+ E +V LAK++GY++AGTVEF++D NFYF+E+N RLQVEH ++E
Sbjct: 242 APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTE 301
Query: 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF 417
ITG+D+V+ I++A G+ L + Q + G AI+ L EDP R F PS GRL +
Sbjct: 302 LITGVDLVEQMIRVAAGE---PLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRY 358
Query: 418 TDPASI--------------------GIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYK 457
PA +R D+ Y G +IS YD ++AK+ T
Sbjct: 359 RPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGV-YEGGEISMYYDPMIAKLCTWAPTRA 417
Query: 458 SSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLE 510
++ E MR AL+ +V G+ NLPFL V D KF+SG+ + T FI + P+ E
Sbjct: 418 AAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGD-MTTAFIAEEYPEGFE 470
Score = 101 bits (255), Expect = 4e-22
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 1318 HLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQ 1377
+ G + + L + + K DT+ + PMPG I++V V+VGQ
Sbjct: 579 RIRTRGADLKVHVRTPRQAELAR------LMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQ 632
Query: 1378 QVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
+V++ L + MK E ++ A GVV +I G +A +D+++ +
Sbjct: 633 EVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 592 bits (1528), Expect = 0.0
Identities = 192/472 (40%), Positives = 288/472 (61%), Gaps = 9/472 (1%)
Query: 37 QQQRFP--VRRCGCKPPPPPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFS 94
+ G P ++++++L+ANR E+A RV R+ +GI SV ++S+ D+ +
Sbjct: 6 HHHHHSSGLVPRGSHMNPDYRSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHA 65
Query: 95 AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGA 154
H + D A +G G P +YL II A + AIHPGYGFLSE DFA+A A
Sbjct: 66 RHVAEADIAVDLG-GAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEA 124
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214
GL F+GP + +G K A+ +A VP++PG D++ + + +PV+LK
Sbjct: 125 GLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLK 184
Query: 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274
AA GGGG+GM++V + + E AQ EA A+FG MLVEKY+ +PRH+E+Q+ D++
Sbjct: 185 AAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRH 244
Query: 275 GDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
G ++L ERDCS+QRR+QKV++ APA + +R A+ E +VR A+++GY AGTVEFLL
Sbjct: 245 GHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLL 304
Query: 335 DKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAI 394
D+ F+F+E+N RLQVEH ++E ITG+D+V QI++A+G+ L L QE++ G AI
Sbjct: 305 DERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGE---ALPLTQEQVPLNGHAI 361
Query: 395 QCHLRTEDPKRNFQPSTGRLDVFTDPA-SIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453
+ L EDP+ +F P++GRL ++ + A G RVDS G ++SP YD +LAK+I
Sbjct: 362 EVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGV-REGDEVSPFYDPMLAKLIAWG 420
Query: 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505
T + + +++ L ET V G+ TNL FL + F + E L+T FI +
Sbjct: 421 ETREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAE-LDTGFIARH 471
Score = 100 bits (250), Expect = 2e-21
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 1349 RSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI 1408
++A G + APM G+I+ V V+ GQ V+ L+V+ MK E I A GVVK +
Sbjct: 594 EAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKAL 653
Query: 1409 FVEVGGQVAQNDLVVVLD 1426
+ G V + +V LD
Sbjct: 654 YCSEGELVEEGTPLVELD 671
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 586 bits (1514), Expect = 0.0
Identities = 141/515 (27%), Positives = 229/515 (44%), Gaps = 72/515 (13%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIK-----------SVGIYSEQDKFSAHRTKVDQA 103
+ KILIAN A++ R+ + + ++ + + + + DQ
Sbjct: 45 TVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQY 104
Query: 104 FLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAV--IGAGLEFIGP 161
V G Y N+ I+ IA+ +VDA+ G+G SE + + + FIGP
Sbjct: 105 IEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163
Query: 162 APNVLKTLGDKVLARDAALKADVPIIPGTTEP------------------------VTDV 197
N +++LGDK+ + A A VP IP + T
Sbjct: 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSP 223
Query: 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEK 257
+ + + FPV++KA+ GGGG+G+R V EE+F +A + + K
Sbjct: 224 EDGLQKAKRIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMK 279
Query: 258 YIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVR 317
R RH+EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VR
Sbjct: 280 LAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVR 339
Query: 318 LAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376
L K +GY +AGTVE+L D FYF+E+NPRLQVEH +E ++G+++ +Q++IA G
Sbjct: 340 LGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIP 399
Query: 377 L--------------------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPS 410
+ + Q + P+G C + +EDP F+PS
Sbjct: 400 MHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPS 459
Query: 411 TGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET 470
G L +S + S I DS I ++S + M AL+E
Sbjct: 460 GGTLHELNFRSSSNVWGYFSV-GNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 518
Query: 471 QVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
+ G T + +L+ + + + F + T ++DD
Sbjct: 519 SIRGDFRTTVEYLIKLLETEDFEDNT-ITTGWLDD 552
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 595 bits (1537), Expect = 0.0
Identities = 175/470 (37%), Positives = 267/470 (56%), Gaps = 11/470 (2%)
Query: 37 QQQRFPVRRCGCKPPPPPKTM-EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSA 95
R K E +LIANR E+A+R+ + MGIKSV +YS+ DK+S
Sbjct: 10 HSSGLVPRGSHMASEAQKKKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQ 69
Query: 96 HRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG 155
H T D + + G YL+I +II AK AI PGYGFLSE DF+
Sbjct: 70 HVTDADFSVALH-GRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQEN 128
Query: 156 LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
+ F+GP+ + ++ LG K AR+ A +A VP++PG+ + D + KE ++E+PV++K+
Sbjct: 129 IVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKS 187
Query: 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275
GGGG G++ V ++D IE F+ Q + + FG + +E++++ RH+E+Q++GD +G
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFG 247
Query: 276 DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+ + ERDCS+QRR QKVI+ PA ++ + R + S RL L Y AGTVEF+ D
Sbjct: 248 KAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYD 307
Query: 336 KDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAI 394
+ + FYF+EVN RLQVEH ++E +TG+D+V+ ++IA S KI G +I
Sbjct: 308 EQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDS---PDFDNTKIEVSGASI 364
Query: 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454
+ L E+P ++F+PS G+L + P+ RVD+ G +S +YD LAKIIVH
Sbjct: 365 EARLYAENPVKDFRPSPGQLTSVSFPS--WARVDTWV-KKGTNVSAEYDPTLAKIIVHGK 421
Query: 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
+ K+ +AL ET V G TN+ +L ++ K F + + T +D
Sbjct: 422 DRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAK-VATKVLDS 470
Score = 86.2 bits (214), Expect = 6e-17
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1354 SDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413
D A + + G + VG V+ D +I++ MKTE ++ A+ G V +I + G
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223
Query: 1414 GQVAQNDLVVVL 1425
V DLV V+
Sbjct: 1224 DMVEAGDLVAVI 1235
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 558 bits (1439), Expect = 0.0
Identities = 147/564 (26%), Positives = 253/564 (44%), Gaps = 70/564 (12%)
Query: 1 MRRAEKERVTTMLGFLGATRHAMKSLTRWIRPNLLVQQQRFPVRRCG--CKPPPPPKTME 58
MR + R + G + + + + R L + F V + +E
Sbjct: 1 MRGSGSMRGS---GSMRPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIE 57
Query: 59 KILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQDKF--SAHRTKVDQAFLVG 107
K+LIAN A++ R+ NE I+ V + + +D + + D V
Sbjct: 58 KVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVP 117
Query: 108 KGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLK 167
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP +
Sbjct: 118 GG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 168 TLGDKVLARDAALKADVPIIPGTTEP---------------------------VTDVDKV 200
LGDK+ + A VP +P + V DVD+
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 201 KEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID 260
E + + FP+++KA+ GGGG+G+R + + F++ QSE + + K
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKLAQ 292
Query: 261 RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAK 320
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RLAK
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 352
Query: 321 SLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL--- 377
++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 353 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412
Query: 378 ----------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPA 421
+G I + +E+P F+PS+G + +
Sbjct: 413 KDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRS 472
Query: 422 SIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTNLP 480
S + S + DS + + M AL+E + G T +
Sbjct: 473 SKNVWGYFSV-AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVE 531
Query: 481 FLLNVFDDKKFLSGEALETNFIDD 504
+L+N+ + + F + + ++T ++D
Sbjct: 532 YLINLLETESFQNND-IDTGWLDY 554
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 554 bits (1431), Expect = 0.0
Identities = 139/509 (27%), Positives = 237/509 (46%), Gaps = 66/509 (12%)
Query: 55 KTM-EKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQDKF--SAHRTKVDQ 102
+ EK+LIAN A++ R+ NE I+ V + + +D + + D
Sbjct: 37 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH 96
Query: 103 AFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162
V G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 97 YVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPP 155
Query: 163 PNVLKTLGDKVLARDAALKADVPIIPGTTEP---------------------------VT 195
+ LGDK+ + A VP +P + V
Sbjct: 156 SEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVK 215
Query: 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255
DVD+ E + + FP+++KA+ GGGG+G+R + + F++ QSE + +
Sbjct: 216 DVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFL 271
Query: 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETS 315
K RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + +
Sbjct: 272 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCA 331
Query: 316 VRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375
+RLAK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G
Sbjct: 332 IRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGV 391
Query: 376 SL-------------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
L +G I + +E+P F+PS+G +
Sbjct: 392 PLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 451
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-V 475
+S + S + DS + + M AL+E + G
Sbjct: 452 LNFRSSKNVWGYFSV-AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDF 510
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDD 504
T + +L+N+ + + F + + ++T ++D
Sbjct: 511 RTTVEYLINLLETESFQNND-IDTGWLDY 538
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 548 bits (1415), Expect = 0.0
Identities = 130/535 (24%), Positives = 216/535 (40%), Gaps = 73/535 (13%)
Query: 648 EFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAV 707
V + + + +T+ RDAHQSL+ATR+ D+ + +S+E WGGA
Sbjct: 14 PREIEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGAT 71
Query: 708 SHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGI 767
+C++FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+
Sbjct: 72 YDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGM 131
Query: 768 DIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827
D+FRVFD +N N+ M AV++ G + TICY +++ Y LA
Sbjct: 132 DVFRVFDAMNDPRNMAHAMAAVKK-AGK--HAQGTICYTIS------PVHTVEGYVKLAG 182
Query: 828 QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACV 886
QL++ GA + LKDMA LLKP A +I + ++ Y I++H H G + + +
Sbjct: 183 QLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 242
Query: 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
+AG D+VD A SMS ++ LE T
Sbjct: 243 EAGVDVVDTAISSMSLGPGHNPTESVAEMLEGTG-------------------------- 276
Query: 947 AHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFR 1006
+ +D + +++ +R Y FE + + +IPGG +N++ +
Sbjct: 277 -----YTTNLDYDRLHKIRDHFKAIRPKYKKFE--SKTLVDTSIFKSQIPGGMLSNMESQ 329
Query: 1007 TMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADK 1064
+ G + ++V G TPSS++V A+F +
Sbjct: 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVM----------MGEY 379
Query: 1065 IIFPKSVTEFFQGSIGEPYQGFPKKLQEKVL-------------DSLKDHALERKAEFDP 1111
+ G G K+ + D L ++ E
Sbjct: 380 KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 1112 IMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFD 1166
+ + +++ + +FP+ F + R GP T A E
Sbjct: 440 LKGFNGTDED--VLTYALFPQVAPVFFEHR-AEGPHSVALTDAQLKAEAEGDEKS 491
Score = 33.8 bits (78), Expect = 0.50
Identities = 11/76 (14%), Positives = 18/76 (23%), Gaps = 22/76 (28%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNK 1342
L G+E S G T G +R + +
Sbjct: 478 DAQLKAEAEGDEKSLAVA-------------------GPVTYNVNVGGTVREVTVQQATR 518
Query: 1343 AKKLKLRSKADSDTAG 1358
A + +L + D
Sbjct: 519 ASQPELAPEDPEDLEH 534
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel fold,
lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 539 bits (1391), Expect = e-179
Identities = 138/508 (27%), Positives = 230/508 (45%), Gaps = 70/508 (13%)
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
+ +K + +TD RDAHQSL ATR+R D+ ++ + +SLE WGGA +C++
Sbjct: 3 QAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQI--GYWSLECWGGATFDSCIR 60
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FL E PW+RL L++ +PN P QM+LRG +L+GY +Y+ V F A + G+D+FRVF
Sbjct: 61 FLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVF 120
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D +N V N+ + + AV++ G + T+CY ++L + D+A+QL E G
Sbjct: 121 DAMNDVRNMQQALQAVKK-MGA--HAQGTLCYTTS------PVHNLQTWVDVAQQLAELG 171
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
+ LKDMAG+L P AA+ L+ + +++ ++ +H+H H AG T L ++AG D V
Sbjct: 172 VDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRV 230
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
D A SMSG PA ++V+ L+ T +
Sbjct: 231 DTAISSMSGTYGHPATESLVATLQGTG-------------------------------YD 259
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
G+D+ + ++Y+R VR+ Y FE +K + + + ++PGG TN++ +
Sbjct: 260 TGLDIAKLEQIAAYFRDVRKKYHAFE-GMMKGSDARILVAQVPGGMLTNMESQLKQQNAL 318
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
+ V LG + TP+S++V A+ Y+ K
Sbjct: 319 DKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVINVVLGERYKT---------ITKET 369
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVL-----------DSLKDHALERKAEFDPIMACDYRED 1120
+ +G G+ +LQ +VL D + + +
Sbjct: 370 SGVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADLIAAEMPTLQDRVLQQAKEQHITL 429
Query: 1121 EPFK----MNKLIFPKATKKFMKFRDEF 1144
+ +F + KF+ R
Sbjct: 430 AENAIDDVLTIALFDQVGWKFLANRHNL 457
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 157 bits (399), Expect = 4e-45
Identities = 41/105 (39%), Positives = 64/105 (60%)
Query: 167 KTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM 226
+ GDK+ ++ A KA+V IPG V D ++ E+ +PV++KA+ GGGG+GMR+
Sbjct: 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRI 63
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILG 271
+ + + F+ + EA +SFG D +L+EK+ID PRHI G
Sbjct: 64 AWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 125 bits (316), Expect = 2e-31
Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 39/327 (11%)
Query: 57 MEK--ILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPV 113
M+K +LI + + + ++ DQ ++V P +
Sbjct: 2 MQKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADC--SPLASALYMADQHYIV----PKI 55
Query: 114 AAYLNIPEIICIAKNNNVDAIHPGYG----FLSE-REDFAKAVIGAGLEFIGPAPNVLKT 168
I ++ + ++ V A+ L++ E F G+ I +
Sbjct: 56 DEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAI----GVTVIVSPYAACEL 111
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK + L+ + T + EV+ PV +K G +R V
Sbjct: 112 CFDKYTMYEYCLRQGIAHAR--TYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVE 169
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
+ +E+ F + D++V++ + + V D V
Sbjct: 170 TVEEVEQLFSK----------NTDLIVQELLVGQ-ELGVDAYVDLISGKVT-----SIFI 213
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348
+ + ++ +RD + E + G + D Y E+NPR
Sbjct: 214 KE-KLTMRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDL-FDVAGTLYLSEINPR 271
Query: 349 LQVEHTLSEEITGIDVVQSQIKIAQGK 375
+ + E G++ + +
Sbjct: 272 FGGGYPHAYE-CGVNFPAQLYRNLMHE 297
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 125 bits (316), Expect = 9e-31
Identities = 68/426 (15%), Positives = 142/426 (33%), Gaps = 52/426 (12%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
++LI + + +A E+GI ++ + + D+ + N
Sbjct: 9 RLLILGAGRGQLGLYKAAKELGIHTI-AGTMPNAHKPCLNLADEISYMD--------ISN 59
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLE---FIGPAPNVLKTLGDKVLA 175
E+ K+ N+D + D + + +G GDK
Sbjct: 60 PDEVEQKVKDLNLDGA------ATCCLDTGIVSLARICDKENLVGLNEEAAIMCGDKYKM 113
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
++A K +V V + +++K + ++ PVI+KA G +G+ + ++ +
Sbjct: 114 KEAFKKYNVNTARHFV--VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAID 171
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV- 294
F + + +VE++I+ Q K DV+ +
Sbjct: 172 GFNETMN---LTKRD-YCIVEEFIEGY-EFGAQAFVYK-NDVLFV----MPHGDETYMSH 221
Query: 295 ----IQIAPAQDMSVSVRDAITETSVRLAKSLGYSN-AGTVEFLLDKDDNFYFIEVNPRL 349
+ D+ + + + K+LG +N A V+ +L KD+ Y IE+ R+
Sbjct: 222 TAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMIL-KDNEVYIIELTGRV 280
Query: 350 QVEHT--LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNF 407
L E GI+ + +A ++ + K G A
Sbjct: 281 GANCLPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMII---------E 331
Query: 408 QPSTGRLDVFTDPASIGIRVDSSCPY--PGLQISPDYDSL--LAKIIVHTATYKSSCEKM 463
+G L + + + + +I +S + +IIV T +K+
Sbjct: 332 TEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKL 391
Query: 464 RRALEE 469
+
Sbjct: 392 DVIINN 397
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 121 bits (304), Expect = 8e-29
Identities = 65/386 (16%), Positives = 124/386 (32%), Gaps = 36/386 (9%)
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
+ +I+ +A+ DAI A L G + DK R
Sbjct: 89 EVVEQIVKVAEMFGADAITTNNELFIA----PMAKACERLGLRGAGVQAAENARDKNKMR 144
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
DA KA V I VT ++ + +E+ P+ILK + G+ ++ + + E+
Sbjct: 145 DAFNKAGVKSIKNKR--VTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDE 202
Query: 237 FKRAQS------EALASFGKDDMLVEKYIDRPRHIEVQILGDKY----------GDVVHL 280
F R A + + E+++ Q G G+ +
Sbjct: 203 FNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262
Query: 281 YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT-VEFLLDKDDN 339
D + Q + + I P+ + + I E + + + LG N T E L K+
Sbjct: 263 AIHDKTPQIGFTETSHITPS-ILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNRE 321
Query: 340 FYFIEVNPRLQVEHT--LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCH 397
IE R + +++ G+D+ Q + + +L P A
Sbjct: 322 PGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYVADCHL 381
Query: 398 LRTEDPKRNFQPSTGRLDVFTDP-------ASIGIRVDSSCPYPGLQISP---DYDSLLA 447
+ P T V V S PG + + + +A
Sbjct: 382 YPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIA 441
Query: 448 KIIVHTATYKSSCEKMRRALEETQVS 473
+ + + E +R+ + +++
Sbjct: 442 AFELKGSNSQDVAESIRQIQQHAKLT 467
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 109 bits (274), Expect = 9e-29
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ A GEI AP+ G + ++ VK G VK ++V+ MK ET I+A DG V+++
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 1410 VEVGGQVAQNDLVVVL 1425
V+ V ++ +
Sbjct: 61 VKERDAVQGGQGLIKI 76
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin,
ATP-binding, disease mutation, nucleotide-binding,
mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Length = 94
Score = 107 bits (269), Expect = 7e-28
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 1339 DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIH 1398
+ S T+ + +PMPG ++ V VK G V + + V+ MK + +
Sbjct: 7 HSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMT 66
Query: 1399 ASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
A G VK + + G V + DL+V L+
Sbjct: 67 AGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 104 bits (261), Expect = 1e-26
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ +T G APM G I +V VK G +VK D L+VM MK E I + DG VK++F
Sbjct: 7 GVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVF 66
Query: 1410 VEVGGQVAQNDLVVVLD 1426
G Q ++ +V +
Sbjct: 67 YREGAQANRHTPLVEFE 83
Score = 38.2 bits (89), Expect = 0.002
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET 1395
I +P G + +V + G Q ++ L+ +++
Sbjct: 53 TIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural
genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB:
2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 101 bits (254), Expect = 5e-26
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 1355 DTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414
+ + APMPG ++ V V+VG +V+ L+V+ MK E I + DGVVK I V+ G
Sbjct: 3 VSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE 62
Query: 1415 QVAQNDLVVVL 1425
V ++ L
Sbjct: 63 AVDTGQPLIEL 73
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 97.3 bits (243), Expect = 2e-24
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQN 1419
+ M GN+ +V VK G Q++K + ++ MK E I A G+VKE+ + G V +
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEG 61
Query: 1420 DLVVVLD 1426
D+++ L
Sbjct: 62 DVLLELS 68
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389
I A G + EVK K G V + DVL+ +S
Sbjct: 38 PIVADRSGIVKEVKKKEGDFVNEGDVLLELS 68
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding, biotin,
fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Length = 84
Score = 76.6 bits (189), Expect = 4e-17
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412
++D + +P G + + V+ G V+ M VMK ++ G VK I
Sbjct: 2 END-PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRP 59
Query: 1413 GGQVAQNDLVVVLDV 1427
G + +V L++
Sbjct: 60 GAVLEAGCVVARLEL 74
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 71.7 bits (176), Expect = 3e-15
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
+ + +P G + + V+ G V+ M VMK ++ G VK I
Sbjct: 12 EKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KR 70
Query: 1412 VGGQVAQNDLVVVLDV 1427
G + +V L++
Sbjct: 71 PGAVLEAGCVVARLEL 86
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 76.3 bits (187), Expect = 6e-15
Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 42/252 (16%)
Query: 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD 183
+ K++ I P FL E +G + + DK L+ +
Sbjct: 66 YLEKSDAFLIIAPEDDFLLYT---LTKKAEKYCENLGSSSRAIAVTSDKWELYKK-LRGE 121
Query: 184 VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE 243
V + P T + + + I+K G G+
Sbjct: 122 VQV------PQTSLRPL-------DCKFIIKPRTACAGEGIGFSDEVP------------ 156
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDM 303
D + +++I+ ++ V + + + + E+ + RY + A +
Sbjct: 157 -------DGHIAQEFIE-GINLSVSLAVGEDVKCLSVNEQIIN-NFRYAGAVVPAR---I 204
Query: 304 SVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGID 363
S V+ + E +VR + + N G V + D Y IE+N RL G
Sbjct: 205 SDEVKREVVEEAVRAVECVEGLN-GYVGVDIVYSDQPYVIEINARLTTPVVAFSRAYGAS 263
Query: 364 VVQSQIKIAQGK 375
V
Sbjct: 264 VADLLAGGEVKH 275
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 75.5 bits (186), Expect = 2e-14
Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 29/295 (9%)
Query: 659 ILLTDTTFRDAHQSLLATRVR-TYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLKFL 715
+ + D T RD T + N L LE+
Sbjct: 3 LKILDCTLRDGGY---YTNWDFNSKIVDA---YILAMNELPIDYLEVGYRNKPSKEYMGK 56
Query: 716 KECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDP 775
+ + + + ++ N +P ++ L +D+ R+
Sbjct: 57 FGYTPVSVLKH------LRNISTKKIAIMLNEKNTTPEDLNHL-LLPIIGLVDMIRIAID 109
Query: 776 LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835
N+ + + + + V + Y ++ + ++ A
Sbjct: 110 PQ---NIDRAIVLAKAIKTMGFEVGFNVMYMSK--------WAEMNGFLSKLKAIDKIAD 158
Query: 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895
+ C+ D G + P K L+ R+ Y ++ + H HD G+ ++ + G D +D
Sbjct: 159 LFCMVDSFGGITPKEVKNLLKEVRK-YTHVPVGFHGHDNLQLGLINSITAIDDGIDFIDA 217
Query: 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
M M +++ L N +D + + + + + + E Y NL
Sbjct: 218 TITGMGRGAGNLKMELLLTYL-NKHHGLNVDFNVLGNIITTFTPLLEKYQWGTNL 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.8 bits (191), Expect = 2e-14
Identities = 120/664 (18%), Positives = 194/664 (29%), Gaps = 245/664 (36%)
Query: 235 ENFKRAQSEALASFGKDDM------LVEK---YIDRP-----------------RHIEVQ 268
E F + E F DD LV K Y+ E
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 269 ILGDKYGDV----VHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKS--L 322
L D+ L + + + + +++I+ ++ R + + S
Sbjct: 95 YLEGN--DIHALAAKLLQENDTTLVKTKELIKNY------ITARIMAKRPFDKKSNSALF 146
Query: 323 GYSNAGTVEFLL------DKDDNFYFIEVNPRLQVEHTLSEEI--TGIDVVQSQIKIAQG 374
G + + + DD YF E L+ ++ T +V IK +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDD--YFEE----LR-------DLYQTYHVLVGDLIKFS-A 192
Query: 375 KSLTEL---GLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC 431
++L+EL L EK+ QG I L P L SI I SC
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSN----TPDKDYL------LSIPI----SC 238
Query: 432 PYPGL-QISPDYDSLLAKIIVHTATYKSSCEKMRRALEE--TQVSGVTTNLPFLLNVFDD 488
P G+ Q+ A Y + + + E + + G T + L+
Sbjct: 239 PLIGVIQL---------------AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV-- 281
Query: 489 KKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIG------------------ETL 530
++ +F + + + +L FIG ++L
Sbjct: 282 --AIAETDSWESFFV--------SVRKA---ITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 531 VNG-----PMTPLYV-NVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYL 584
N PM L + N+ V +++T S +S L
Sbjct: 329 ENNEGVPSPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS----------------L 370
Query: 585 IKKPQANGYRKLLQVMGAGE------FVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYD 638
+ NG + L V+ +G T+RK K D QS R+
Sbjct: 371 V-----NGAKNL--VV-SGPPQSLYGLNLTLRKAKAPSGLD-------QS----RI---- 407
Query: 639 LKKVMMGAGEFVNSVRKLK--HILLTDTT-FRDAHQSLL--ATRVRTYDLKKVSPFVANR 693
F S RKLK + L + F H LL A+ + DL K
Sbjct: 408 ---------PF--SERKLKFSNRFLPVASPF---HSHLLVPASDLINKDLVKN------- 446
Query: 694 FNNLYSLEMWGGAVSHTCLKFLKECPWERLAELR-ELIPNIPFQMILRGNSLVGYSNYSP 752
N ++ + V T L L + I I+R P
Sbjct: 447 -NVSFNAKDIQIPVYDT-------FDGSDLRVLSGSISERI-VDCIIR----------LP 487
Query: 753 AEVGAFCRLASQAGIDIFRVFDP--LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDL- 809
+ + + +D F P + + L + TG IV AG L
Sbjct: 488 VKWETTTQFKATHILD----FGPGGASGLGVLTH---RNKDGTGVRVIV------AGTLD 534
Query: 810 TNPN 813
NP+
Sbjct: 535 INPD 538
Score = 64.7 bits (157), Expect = 2e-10
Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 59/221 (26%)
Query: 1150 LPTRIFFHALERKAEFDPIMACD----CRENEPVKMNELIFPKATKKFMKF--------- 1196
+PT FF A + + +F+ I+ ++EP EL+ KF+ +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-----KFLGYVSSLVEPSK 76
Query: 1197 RDEFGPVDKLP----TRIFLNGPNI--------GEEFSCEFKTGD--TAYVTTLSISEH- 1241
+F V L +L G +I E + KT + Y+T +++
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 1242 --------LNDH---GERTVFFLYNGLHTTNTY--NLQQILKTSPSDVFAFLR------- 1281
L G + ++ G T+ Y L+ + +T V ++
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1282 ------LKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSIS 1316
L +E++F G NI E T D Y+ ++ IS
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Score = 61.2 bits (148), Expect = 3e-09
Identities = 48/297 (16%), Positives = 84/297 (28%), Gaps = 109/297 (36%)
Query: 1113 MACDYREDEPFKMNKLIFPKATKKFMKFRDEFG-----PVDKLPTRIFFHALERKAEFDP 1167
M D + K + ++ +A F +D +G V P + H F
Sbjct: 1631 MGMDLYKT--SKAAQDVWNRADNHF---KDTYGFSILDIVINNPVNLTIH-------FGG 1678
Query: 1168 IMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKT 1227
REN + +IF +K F +++ T S
Sbjct: 1679 EKGKRIREN----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK--GLLS----- 1727
Query: 1228 GDTAY----VTTLSIS--EHLND------------H--GERTVFFLYNGLHTTNTYNLQQ 1267
T + +T + + E L H GE Y L
Sbjct: 1728 -ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE------YAAL---------- 1770
Query: 1268 ILKTSPSDVFAF---LRLKSERIFLNGPNIGEEFSCEFKTGDTAY----VTTLSISEHLN 1320
S +DV + + + R G + + G + Y + ++ +
Sbjct: 1771 ---ASLADVMSIESLVEVVFYR----G-MTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 1321 DH---------GERTVFFL----YN---------GQLRSLDK-------NKAKKLKL 1348
G+RT + + YN G LR+LD K +K+ +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 60.4 bits (146), Expect = 5e-09
Identities = 118/721 (16%), Positives = 189/721 (26%), Gaps = 288/721 (39%)
Query: 668 DAHQSLLATRVRTYDLKKVSPFVAN----RFNNLYSLEMWGGAVSHTCLK--FLK--ECP 719
DA+ +TR P + L + A + L+ F K P
Sbjct: 2 DAY----STR----------PLTLSHGSLEHVLLVPTASFFIA---SQLQEQFNKILPEP 44
Query: 720 WERLAELRELIPNIPFQMILRGNSLVGY--SNYSPAEVGAFCRLASQAGIDIFRVFDPLN 777
E A E P P +++ + +GY S P++VG F ++ + F
Sbjct: 45 TEGFAADDE--PTTPAELVGK---FLGYVSSLVEPSKVGQFDQVL-NLCLTEFE------ 92
Query: 778 SVPNLVKGMDAVQQVTGGSTI--VEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835
G+ I + A + D T K+ NY A+ + +
Sbjct: 93 ------------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRP-- 136
Query: 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895
K + + L FR G G A +A
Sbjct: 137 ---------FDKKSNSAL----FRA--------------VGEGNAQLVAI---------- 159
Query: 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC- 954
G Q G E +L D+ Y +Y V +L + L
Sbjct: 160 ----FGG---Q---GNTDDYFE--------ELRDL--YQTYHVLVGDLIKFSAETLSELI 199
Query: 955 ------------GIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIP------ 996
G+++ + W L P + YL IP
Sbjct: 200 RTTLDAEKVFTQGLNILE-------W-----LENP------SNTPDKDYLLSIPISCPLI 241
Query: 997 G----GQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
G Y + + G +++ + A + V A +AI T
Sbjct: 242 GVIQLAHYVVT-AKLL--GFTPGELRSYLKGATGHSQGL--------VTA-VAIAETDSW 289
Query: 1053 LSYRDVMENADKIIF----------------PKSVTEFFQGSIGEP-----YQGFPKKLQ 1091
S+ + A ++F P + + + + G P ++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 1092 EKVLDSLKDH-------------------------ALE------RKAEFDPIMACD-YRE 1119
+ ++ H +L RKA+ D R
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSR- 406
Query: 1120 DEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFH-ALERKAEFDPIMACDCRENEP 1178
PF KL KF + F PV P FH L A D I + N
Sbjct: 407 -IPFSERKL----------KFSNRFLPVA-SP----FHSHLLVPAS-DLINKDLVKNNVS 449
Query: 1179 VKMNELIFP-KATKKFMKFRDEFG-------------PVD------KLPTRIFLNGPNIG 1218
++ P T R G PV T I GP
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--- 506
Query: 1219 EEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFA 1278
G + + L + + G R + + T L +P D +
Sbjct: 507 ---------GGASGLGVL-THRNKDGTGVRVI------VAGT--------LDINPDDDYG 542
Query: 1279 F 1279
F
Sbjct: 543 F 543
Score = 48.1 bits (114), Expect = 3e-05
Identities = 74/469 (15%), Positives = 141/469 (30%), Gaps = 162/469 (34%)
Query: 954 CGIDLHDV-----CDYSSYWRKVREL----YAPFECTD-----------LKAASS-EAYL 992
G D+H + + + K +EL +A A L
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 993 YEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
I GGQ + FE+++ Y+T + L+GD+IK S++ +++L +
Sbjct: 157 VAIFGGQGNTDDY--------FEELRDLYQTYHVLVGDLIK--FSAETLSELIRTTLDAE 206
Query: 1053 LSYR---DVM---ENADK-----------IIFPKS-VTEFFQGSIGEPYQGFPKKLQ--- 1091
+ +++ EN I P V + Y K L
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH------YVVTAKLLGFTP 260
Query: 1092 EKVLDSLKDHALERKAEFDPIMA-----CDYREDEPFKMNKLIFPKATKKFMKFRDEFGP 1146
++ LK ++ + A D E F + +K +
Sbjct: 261 GELRSYLK--GATGHSQ-GLVTAVAIAETDSWES---------FFVSVRKAITV------ 302
Query: 1147 VDKLPTRIFFHALE-----RKAEFDPIMACDCREN---EPVKMNEL----IFPKATKKFM 1194
+FF + P + D EN P M L + + + ++
Sbjct: 303 -------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQVQDYV 353
Query: 1195 KFRDEFGPVDKLPTRIFL---NGPNIGEEFSCEFKTGDTAYVTT---LSISEHLNDHGER 1248
+ P K ++ + NG V + S
Sbjct: 354 NKTNSHLPAGK---QVEISLVNGAK--------------NLVVSGPPQS----------- 385
Query: 1249 TVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLK-SERI------FLNGPNIGEEFSCE 1301
LY GL+ L++ S D R+ SER FL P + F
Sbjct: 386 ----LY-GLNL----TLRKAKAPSGLDQS---RIPFSERKLKFSNRFL--P-VASPFHSH 430
Query: 1302 FKTGDTAYVTTLSISEHLNDHGER---TVFFLYNGQ-LRSLDKNKAKKL 1346
+ + + +++ + + V+ ++G LR L + ++++
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Score = 46.2 bits (109), Expect = 9e-05
Identities = 100/649 (15%), Positives = 172/649 (26%), Gaps = 247/649 (38%)
Query: 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTY--DLKKVSPFVANRFNNLYSLEM 702
G+ E V V + + ++ +L + D + +P E+
Sbjct: 14 GSLEHVLLVPTASFFIAS--QLQEQFNKILPEPTEGFAADDEPTTP-----------AEL 60
Query: 703 WGGAVSHTCLKFL----KECPWERLAELRELIPNI--PF-QMILRGN-------SLVGYS 748
G KFL ++ + +++ F L GN L+ +
Sbjct: 61 VG--------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 749 NYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYA-- 806
+ + + + A I R FD ++ L + AV G + + A
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFR---AVG--EGNAQL------VAIF 160
Query: 807 ---GDLTNPNKKKY-----SLNY--YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIG 856
G N Y L Y Y L L++ A+ L + L++ T
Sbjct: 161 GGQG-----NTDDYFEELRDL-YQTYHVLVGDLIKFSAETL-----SELIRTTL------ 203
Query: 857 SFREKYPNILIHVH--------THD---MAGTGVA------TTLA-----CVKAGADIVD 894
+ + L ++ T D + ++ LA G +
Sbjct: 204 DAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 895 VAADSMSGI--CSQPAMGTIVS-CLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLL 951
+ + G SQ G + + + TD + S++ VR+ L
Sbjct: 263 L-RSYLKGATGHSQ---GLVTAVAIAETD-----------SWESFFVSVRKAI---TVLF 304
Query: 952 W---RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTM 1008
+ RC + E + + +
Sbjct: 305 FIGVRC----Y-------------------EAYPNTSLPPSILEDSLENNE------GVP 335
Query: 1009 SF-----GLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMEN-A 1062
S L E V+ N P+ K V +++ N A
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTN-------SHLPAGKQVE-ISLV-------------NGA 374
Query: 1063 DKIIFPKSVTEFFQGSIGEPYQGFPKKLQ------EKV-----LDSLKDHALERK----A 1107
++ V+ G P+ L K LD + ERK
Sbjct: 375 KNLV----VS------------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 1108 EFDPIMACDYREDEPF------KMNKLIFPKATKKFMKFR-DEFG-PVDKLPTRIFFHAL 1159
F P+ + PF + LI K + F + PV +
Sbjct: 419 RFLPVAS-------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--------YDTF 463
Query: 1160 ------ERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGP 1202
+ DC PVK KAT D FGP
Sbjct: 464 DGSDLRVLSGSISERI-VDCIIRLPVKWETTTQFKAT----HILD-FGP 506
Score = 43.5 bits (102), Expect = 7e-04
Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 91/234 (38%)
Query: 221 GRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKY------IDR--PRHIEV----- 267
G GM + A ++ + RA D+ + Y I P ++ +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRA----------DNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 268 --QILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRD-------------AIT 312
+ + + Y ++E + + +K+ + S + R A+T
Sbjct: 1680 KGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 313 ETSV---RLAK--------------SLG-YS----NAG----------------TVEFLL 334
K SLG Y+ A T++ +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 335 DKD----DNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQ 384
+D N+ I +NP +V + S+E + V ++ G L +
Sbjct: 1798 PRDELGRSNYGMIAINPG-RVAASFSQE--ALQYVVERVGKRTG------WLVE 1842
Score = 40.4 bits (94), Expect = 0.005
Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 69/195 (35%)
Query: 905 SQ-PAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC-GIDLHDVC 962
SQ MG +DL Y + + ++++ A N G + D+
Sbjct: 1626 SQEQGMG--------------MDL-----YKTS-KAAQDVWNRADNHFKDTYGFSILDIV 1665
Query: 963 -----DYSSYW-----RKVRELYAPFECTDLKAAS--SEAYLYEIPGGQYTNLKFRTMSF 1010
+ + ++ +++RE Y+ + +E EI N + +F
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI------NEHSTSYTF 1719
Query: 1011 GLDFEDVKRAYRTANFLLGDIIKCT-PSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
+ + T T P A+ EK ++ D+ + P
Sbjct: 1720 RSEKGLL---SATQF---------TQP--------ALT-LMEKAAFEDLKSKG---LIPA 1755
Query: 1070 SVTEFFQG-SIGEPY 1083
F G S+GE Y
Sbjct: 1756 DA--TFAGHSLGE-Y 1767
Score = 36.6 bits (84), Expect = 0.070
Identities = 46/297 (15%), Positives = 84/297 (28%), Gaps = 102/297 (34%)
Query: 682 DLKKVSPFVANRFNN--LYSLEMWGGAVSHTCLKFLKECPW----ERLAELRELIPNIPF 735
DL K S + +N + + +G ++ + E+ +RE + F
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 736 QMILRGN------------SLVGYSNYSPAEVGAFCR----------LASQAGIDIFRVF 773
+ I+ G Y+ S + L +A F
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---LSATQFTQPALTLMEKA---AFED- 1746
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
L S KG ++ A +AG +SL Y LA S
Sbjct: 1747 --LKS-----KG------------LIPADATFAG---------HSLGEYAALA-----SL 1773
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGAD- 891
A V+ ++ +++ +R + + + G +A V A
Sbjct: 1774 ADVMSIES--------LVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 892 -----IVDVAADSMSGICS---------Q-------PAMGTIVSCLENTDKRCGIDL 927
+V+ + Q A+ T+ + L N K ID+
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL-NFIKLQKIDI 1879
Score = 33.9 bits (77), Expect = 0.47
Identities = 48/298 (16%), Positives = 83/298 (27%), Gaps = 101/298 (33%)
Query: 3 RAEKERVTTMLGF--LGATRHAMKSLT--------RWIRPNLLVQQQRFPVRRCGCKPPP 52
RA+ T GF L + +LT + IR N
Sbjct: 1648 RADNHFKDT-YGFSILDIVINNPVNLTIHFGGEKGKRIREN------------------- 1687
Query: 53 PPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ-A-FLVGKGM 110
++ + ++ + E+ S +K T+ Q A L+
Sbjct: 1688 ----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME--- 1740
Query: 111 PPVAAYLNIPEIICIAKNNNVDAI---HP-G-Y-------GFLSEREDFAKAVIGAGLEF 158
AA+ E + DA H G Y +S E + V F
Sbjct: 1741 --KAAF----EDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-ESLVEVV------F 1787
Query: 159 I-GPAPNVLKTLGDKVLARDAALKADVPII---PGTTEPVTDVDKVKEFCDEVEFPVILK 214
G T+ V RD +++ +I PG + ++ + V
Sbjct: 1788 YRG------MTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV------- 1833
Query: 215 AAFGGG--------GRGMRMVA--NKDAIEE-----NFKRAQS----EALASFGKDDM 253
G + VA + A++ NF + Q E S +++
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 73.0 bits (180), Expect = 1e-13
Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P L+ D++ + VP P PV + ++E V P +LK GG
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVPTPP--FHPVDGPEDLEEGLKRVGLPALLKTRRGGY 143
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G +V ++ EAL + G +++E ++ R + + + + G+V
Sbjct: 144 DGKGQALVRTEEEAL--------EALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAF 195
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
L E + + +APA S +++ ++R ++L Y G +EF
Sbjct: 196 YPLVE---NRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDY--VGVLALEFFQV 250
Query: 336 KDDNFYFIEVN---PR 348
++ + N PR
Sbjct: 251 GEE----LLFNEMAPR 262
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 73.0 bits (180), Expect = 2e-13
Identities = 37/193 (19%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+ ++T+ +K ++ K +P+ ++ + +++ +P++LK+
Sbjct: 113 PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAY 172
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG V ++D I EAL + + EK+ + V ++ K +V+
Sbjct: 173 DGRGNFRVNSQDDIP--------EALEALKDRPLYAEKWAYFKMELAVIVVKTK-DEVLS 223
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
E ++Q + APA+++S ++ E + + + G VE L
Sbjct: 224 YPTVE---TVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDG--KGVFGVEMFLL 278
Query: 336 KDDNFYFIEVNPR 348
+DD+ E+ R
Sbjct: 279 EDDSIMLCEIASR 291
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 72.2 bits (178), Expect = 3e-13
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 38/250 (15%)
Query: 113 VAAYLNIPEIICIAKNNNVDAIHPGYGFLSERE----DFAKAVIGAGLEFIGPAPNVLKT 168
V L+ + + + I P E E D + GL + P K
Sbjct: 57 VINMLDGDALRRVVELEKPHYIVP------EIEAIATDMLIQLEEEGLNVV-PCARATKL 109
Query: 169 LGDKVLARDAAL-KADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227
++ R A + +P +E ++ +P I+K G+G +
Sbjct: 110 TMNREGIRRLAAEELQLPTST--YRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFI 167
Query: 228 ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-----VVHLYE 282
+ + + + +K AQ A G ++VE + I + + G V H
Sbjct: 168 RSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGH--- 222
Query: 283 RDCSMQRR--YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLDKDD 338
Q Y++ Q P Q MS + E + ++ +LG G VE + D+
Sbjct: 223 ----RQEDGDYRESWQ--PQQ-MSPLALERAQEIARKVVLALGG--YGLFGVELFVCGDE 273
Query: 339 NFYFIEVNPR 348
F EV+PR
Sbjct: 274 -VIFSEVSPR 282
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 70.2 bits (172), Expect = 5e-13
Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 17/237 (7%)
Query: 129 NNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIP 188
V S A+ + G+ + P V++ GDK A KA +P
Sbjct: 47 EGVTVALERCVSQSRGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPK 105
Query: 189 GTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248
T TD ++ + +PV+LK G GR + E L F
Sbjct: 106 --TALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXXXXXXXXXXXXKEVLGGF 161
Query: 249 GKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSV 307
+++Y+++P R I V ++G++ + R + Q + +
Sbjct: 162 QHQLFYIQEYVEKPGRDIRVFVVGER---AIAAIYR---RSAHWITNTA-RGGQAENCPL 214
Query: 308 RDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDV 364
+ + SV+ A+++G V+ + EVN ++ ++ S TG+D+
Sbjct: 215 TEEVARLSVKAAEAVGGGVVA-VDLFES-ERGLLVNEVNHTMEFKN--SVHTTGVDI 267
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 70.3 bits (173), Expect = 7e-13
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 33/192 (17%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK + + VP P T V D ++ P+ +K A G +
Sbjct: 107 DKFRTKLVWQQTGVPTPPFET--VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLK 164
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL------ 280
V DA+ A A+ ++VEK I+ I GD ++ +
Sbjct: 165 VKTADALPAALSEA-----ATHD-KIVIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEF 218
Query: 281 ------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y + + +Y + P + + + R LG ++ G +F+L
Sbjct: 219 YDYHAKYVANDT---QY-----LIPC-GLPAEQETELKRIARRAFDVLGCTDWGRADFML 269
Query: 335 DKDDNFYFIEVN 346
D N YF+EVN
Sbjct: 270 DAAGNAYFLEVN 281
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 71.2 bits (175), Expect = 9e-13
Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 29/248 (11%)
Query: 113 VAAYLNIPEIICIAKNNNVDAIHPGYGFLSERE----DFAKAVIGAGLEFIGPAPNVLKT 168
V ++ + + + DAI P E E D G + P
Sbjct: 65 VGNMMDKDFLWSVVEREKPDAIIP------EIEAINLDALFEFEKDGYFVV-PNARATWI 117
Query: 169 LGDKVLARDAALK-ADVPIIPGTTE--PVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225
+ R+ +K A VP T+ T +D++ E C+++ +P KA G+G
Sbjct: 118 AMHRERLRETLVKEAKVP----TSRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSY 173
Query: 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQI---LGDKYGDVVHLYE 282
V + I + ++ A+++A S K ++VE++ID + + V +
Sbjct: 174 FVKGPEDIPKAWEEAKTKARGSAEK--IIVEEHIDFDVEVTELAVRHFDENGEIVTTFPK 231
Query: 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLDKDDNF 340
Q PA+ +S + + R+ LG G VE + K D
Sbjct: 232 PVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGG--LGIFGVEMFV-KGDKV 287
Query: 341 YFIEVNPR 348
+ EV+PR
Sbjct: 288 WANEVSPR 295
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 70.7 bits (174), Expect = 1e-12
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
+L ++ ++A KA +P+ V + +++ E E+ +P +LK GG
Sbjct: 102 QGSQLLSKTQNRFTEKNAIEKAGLPVAT--YRLVQNQEQLTEAIAELSYPSVLKTTTGGY 159
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G ++ ++ ++E A + ++EK++ + + V ++ G+
Sbjct: 160 DGKGQVVLRSEADVDE--------ARKLANAAECILEKWVPFEKEVSVIVIRSVSGETKV 211
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
+ E ++ I PA ++ + + LA L GT VE
Sbjct: 212 FPVAE---NIHVNNILHESIVPA-RITEELSQKAIAYAKVLADELEL--VGTLAVEMFAT 265
Query: 336 KDDNFYFIEVNPR 348
D Y E+ PR
Sbjct: 266 ADGEIYINELAPR 278
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 70.7 bits (174), Expect = 1e-12
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIP-GTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219
PA + D++ + + VP+ P E + + + + P ILK A G
Sbjct: 123 PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLG 182
Query: 220 -GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV- 277
G+G V+ +A A+ G ++EK + + I G
Sbjct: 183 YDGKGQVRVSTAREAR--------DAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSA 234
Query: 278 -------VHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAG 328
VH + ++ I PA + + + +VR+A +LGY G
Sbjct: 235 AFPLAQNVH---HNGILAL--------TIVPAPAADTARVEEAQQAAVRIADTLGY--VG 281
Query: 329 T--VEFLLDKDDNFYFIEVNPR 348
VEF + +D +F E+ PR
Sbjct: 282 VLCVEFFVLEDGSFVANEMAPR 303
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 61.2 bits (149), Expect = 1e-11
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
E+ P + EV VKVG +V LI + K + A GVVKE+ V VG +V
Sbjct: 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKT 63
Query: 1419 NDLVVVLDV 1427
L+++ +V
Sbjct: 64 GSLIMIFEV 72
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 65.4 bits (160), Expect = 4e-11
Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 28/194 (14%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK L ++ + V D++ V +KAA G G+
Sbjct: 135 DKALTKELLTVNGIRNTKYIV--VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISR 192
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERDC 285
V N + E + F D +L+E+ ++ R +EV ++G+ V +
Sbjct: 193 VTNAEEYTEALSDS-------FQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTV 245
Query: 286 SMQRR----------YQ---KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEF 332
Q + V PA +S V + + ++ K L ++F
Sbjct: 246 PNQGSGDGWYDYNNKFVDNSAVHFQIPA-QLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304
Query: 333 LLDKDDNFYFIEVN 346
LLD+++ Y E N
Sbjct: 305 LLDENNVPYLGEPN 318
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 64.5 bits (158), Expect = 5e-11
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 33/193 (17%)
Query: 171 DKVLARDAALKADVP-----IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225
DK+ ++ A +P + DK + PVI+K + G GM
Sbjct: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155
Query: 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
V ++A+++ + A +++L+EK++ V ILG++ + +
Sbjct: 156 KVVAENALQDALRLA-----FQHD-EEVLIEKWLS-GPEFTVAILGEEILPSIRIQPSGT 208
Query: 281 -------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFL 333
+ D + +Y PA + S + ++ +LG G ++ +
Sbjct: 209 FYDYEAKFLSDET---QY-----FCPA-GLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259
Query: 334 LDKDDNFYFIEVN 346
LD D FY +E N
Sbjct: 260 LDSDGQFYLLEAN 272
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 58.8 bits (143), Expect = 6e-11
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
+ EV VKVG +V LI + K + A GVVKE+ V VG +V L+++ +V
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
Score = 36.4 bits (85), Expect = 0.006
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1354 SDTAG-EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
D A E+ AP G + E+KV VG +VK ++++ V
Sbjct: 39 GDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 58.8 bits (143), Expect = 7e-11
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
+IE+ VK G ++ L+V+ K + + GVVK + V++G ++ + D ++ L+
Sbjct: 15 VIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
Score = 36.4 bits (85), Expect = 0.005
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1354 SDTAG-EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
S A E+ +P G + V VK+G ++K+ D +I +
Sbjct: 37 SAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl
dehydrogenase, multienzyme complex, post-translational
modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Length = 81
Score = 58.8 bits (143), Expect = 7e-11
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
II V+V VG + +D LI + K + A GVVKE+ V+VG ++++ L+VV++
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
Score = 36.4 bits (85), Expect = 0.005
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 1354 SDTAG-EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
+D A ++ A + G + EVKVKVG ++ + +++V+
Sbjct: 40 TDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 63.7 bits (156), Expect = 1e-10
Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
++ L D++ ++ A ++P V + + + + + +P I+K FGG
Sbjct: 100 QGYQAIQLLQDRLTEKETLKSAGTKVVP--FISVKESTDIDKAIETLGYPFIVKTRFGGY 157
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G ++ N+ ++ E + + EKY++ + + + + +
Sbjct: 158 DGKGQVLINNEKDLQ--------EGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITF 209
Query: 280 LYERDCSMQRRYQKVIQ-----------IAPAQDMSVSVRDAITETSVRLAKSLGYSNAG 328
+ + + I PA+ + E ++ +S+ + G
Sbjct: 210 -FP-----------LQENEHRNQILFKTIVPAR---IDKTAEAKEQVNKIIQSIHF--IG 252
Query: 329 T--VEFLLDKDDNFYFIEVNPR 348
T VEF +D ++ Y E+ PR
Sbjct: 253 TFTVEFFIDSNNQLYVNEIAPR 274
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 63.3 bits (155), Expect = 2e-10
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+P L+ + DK + ++ K +P V ++ E FPV+ KA GG
Sbjct: 90 PSPYTLEIIQDKFVQKEFLKKNGIP-----VPEYKLVKDLESDVREFGFPVVQKARKGGY 144
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG+ ++ N+ +E K +E++++ + + V + ++ G++
Sbjct: 145 DGRGVFIIKNEKDLENAIKGE------------TYLEEFVEIEKELAVMVARNEKGEIAC 192
Query: 280 --LYERDCSMQRRYQKVI---QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEF 332
+ E M I IAPA+ + E + + ++L G +E
Sbjct: 193 YPVVE----MYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEG--VGIFGIEM 245
Query: 333 LLDKDDNFYFIEVNPR 348
L K E+ PR
Sbjct: 246 FLTKQGEILVNEIAPR 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 6e-10
Identities = 88/663 (13%), Positives = 183/663 (27%), Gaps = 175/663 (26%)
Query: 81 IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV-----DAIH 135
+ + QD + +K + ++ + + + V + +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLR 88
Query: 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDK-VLARDAAL--KADVPIIPGTTE 192
Y FL E P+ + + L D + K +V + +
Sbjct: 89 INYKFLMSP--IKT-------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----Q 135
Query: 193 PVTDV-DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEAL--ASFG 249
P + + E V++ G G G VA + + + +
Sbjct: 136 PYLKLRQALLE--LRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 250 KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRD 309
+ P + +++L + + + I S++
Sbjct: 191 NC--------NSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---------SIQA 232
Query: 310 AITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQI 369
+ RL KS Y N LL + V++ ++ + + +I
Sbjct: 233 ELR----RLLKSKPYENC-----LLVLLN------------VQN--AKAWNAFN-LSCKI 268
Query: 370 KI-AQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVD 428
+ + K +T+ A H+ + P + + R
Sbjct: 269 LLTTRFKQVTDFL---------SAATTTHISLDHHSMTLTPDEV-KSLLLK--YLDCRPQ 316
Query: 429 SSCPYPGLQISPDYDSLL-AKIIVHTATYK----SSCEKMRRALE---ETQVSGVTTNLP 480
P L +P S++ I AT+ +C+K+ +E +
Sbjct: 317 DL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 481 FLLNVFDDKKFLSGEALE---TNFIDDNPQ----------LLERNSYQ-TCRDMKILRFI 526
L+VF + L + I + L+E+ + T I
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--- 432
Query: 527 GETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKY--- 583
L + VK N + V + D ++ D +Y
Sbjct: 433 -----------LELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLD---QYFYS 475
Query: 584 -----LIKKPQA---NGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLAT--R 633
L +R + F+ +K++H D+T +A S+L T +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFR---FLE--QKIRH----DSTAWNASGSILNTLQQ 526
Query: 634 VRTY----------------DLKKVMMGAGEFVNSVR----KLKHILL---TDTTFRDAH 670
++ Y + + E N + L I L + F +AH
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 671 QSL 673
+ +
Sbjct: 585 KQV 587
Score = 59.1 bits (142), Expect = 1e-08
Identities = 102/684 (14%), Positives = 194/684 (28%), Gaps = 240/684 (35%)
Query: 273 KYGDVVHLYER------DCS-MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS 325
+Y D++ ++E DC +Q + ++ + + +DA++ T +RL +L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGT-LRLFWTLLSK 74
Query: 326 NAGTVE-FL---LDKDDNF------------------YFIEVN--------------PRL 349
V+ F+ L + F Y + + RL
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 350 QVEHTLSEEITGIDVVQSQIKIA------QGKS-LTELGLCQEKITPQ-GCAI------Q 395
Q L + + + + + GK+ + K+ + I
Sbjct: 135 QPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 396 CHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYP-----------GLQISPDY-D 443
C+ E Q +L DP + R D S L S Y +
Sbjct: 192 CN-SPETVLEMLQ----KLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 444 SLL-------AKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLN-----VFDDKKF 491
LL AK + SC + L T+ VT L
Sbjct: 246 CLLVLLNVQNAKAW---NAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 492 LSGEALE--TNFIDDNPQLLERNSYQTCRDMKI----LRFIGETLVNGPMTP---LYVNV 542
E ++D PQ L R + L I E++ +G T +VN
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPR---EVL---TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 543 KPVNVDPVIDRTVSKFET--------SCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
+ +I+ +++ E + F + I P
Sbjct: 353 DKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPS----AHI------------PT----- 389
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLA-----TRVRTYDLKKVMMGAGEF 649
LL ++ + V + + L SL+ + + +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQPKESTISIPSI---------- 431
Query: 650 VNSVRKLKHILLTDTTFRDAHQSLLA--TRVRTYDLKKVSPFVANR--FNNL-YSLEMWG 704
+ + H+S++ +T+D + P ++ ++++ +
Sbjct: 432 ------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------ 479
Query: 705 GAVSHTCLKFLKEC-PWERLAELRELIPNIPF-QMILRGNS---------------LVGY 747
H LK ER+ R + + F + +R +S L Y
Sbjct: 480 ----H-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 748 SNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLV--KGMDAVQQVTGGSTIVEATICY 805
Y + RL + I F P NL+ K D ++
Sbjct: 531 KPYICDNDPKYERLVN----AILD-FLP-KIEENLICSKYTDLLRIA------------- 571
Query: 806 AGDLTNPNKKKYSLNYYEDLAKQL 829
L ++ +E+ KQ+
Sbjct: 572 ---LMAEDE-----AIFEEAHKQV 587
Score = 53.3 bits (127), Expect = 6e-07
Identities = 69/504 (13%), Positives = 141/504 (27%), Gaps = 134/504 (26%)
Query: 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEA 990
Y ++ + ++ A + D DV D + + + E + + + +
Sbjct: 15 QYQ--YKDILSVFEDA----FVDNFDCKDVQDM------PKSILSKEEIDHIIMSKDAVS 62
Query: 991 YLYEIPGGQYTNLKFRTMSFGLDF-EDVKRA-YRTANFLLGDIIKCT--PSSKVVADLAI 1046
+ + L + F E+V R Y FL+ I PS
Sbjct: 63 GTLRL----FWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPS--------- 106
Query: 1047 FMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQE-------------- 1092
MT+ + RD + N +++ +V+ +PY + L E
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 1093 --K---VLDSLKDHALERKAEFDPI----MACDYREDEPFKMNKLIFPKATKKFMKFRDE 1143
K LD + ++ K +F I + + +M + + + + R +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSD 218
Query: 1144 FGPVDKLPT--------RIFFHALERKA--------------EFDPIMACDCR-----EN 1176
KL R+ F+ C+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKILLTTRF 274
Query: 1177 EPVKMNELIFPKATKKFM-KFRDEFGPVDKLPTRIFLNGPNIGEEFSC---EFKTGDTAY 1232
+ V + L T + P + + L + E T +
Sbjct: 275 KQV-TDFLSAATTTHISLDHHSMTLTPDEVK--SLLLK--YLDCRPQDLPREVLTTNPRR 329
Query: 1233 VTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTS-----PSDVFA-FLRLKSER 1286
++ I+E + D + + N L I+++S P++ F RL
Sbjct: 330 LSI--IAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379
Query: 1287 IFLNGPNIGEE----FSCEFKTGDTAYVTTLSISEHL-NDHGERTVFFLYNGQLRSLDKN 1341
+F +I + D V L + + + + L K
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 1342 KA-----KKL----KLRSKADSDT 1356
+ + + + DSD
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDD 463
Score = 51.4 bits (122), Expect = 3e-06
Identities = 83/594 (13%), Positives = 166/594 (27%), Gaps = 169/594 (28%)
Query: 438 ISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV-TTNLPFL-LNVFDDKKFLS-G 494
+ +Y L++ I T + S M + Q + N F NV + +L
Sbjct: 87 LRINYKFLMSPI--KTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 495 EALETNFIDDNPQLLERNSY----------------QTCRDMKILRFIGETLVNGPMTPL 538
+AL L C K+ + + +
Sbjct: 142 QAL---------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKI--F 185
Query: 539 YVNVKPVNVDPVIDRTVSKFETSCADFVSDMNER----SKIRTDTDE-----KYLIKKPQ 589
++N+K N + + + + R S I+ + L+K
Sbjct: 186 WLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 590 ANGYRKLLQVMGAGEFVTTVRKLKH------VLLTDTTFRDAHQSLLATRVRTYDLKKVM 643
Y L V+ V + +LLT T F+ L A L
Sbjct: 243 ---YENCLLVL---LNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHS 295
Query: 644 MGAGEFVNSVRKLKHILL--TDTTFRD----AHQ------SLLATRVR----------TY 681
M ++K +LL D +D S++A +R
Sbjct: 296 MTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ--MIL 739
+ K++ + + N L E ++ ++RL+ +IP ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEY-------------RKM-FDRLSVFPPSA-HIPTILLSLI 395
Query: 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST-- 797
+ V S + S+P++ ++ ++
Sbjct: 396 WFDV----IKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIY--LELKVKLENEYALH 446
Query: 798 --IVEA---TICY-AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851
IV+ + + DL P +Y ++ + L + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKN--------IEHPERMT---- 491
Query: 852 KLLIGSFREKYPNI------LIHVHTHDMAGTGVATTLACVKAGAD-IVDVAADSMSGIC 904
FR + + + H T A + TL +K I D
Sbjct: 492 -----LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---------- 536
Query: 905 SQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR-----KVRELYAPAHNLLWR 953
+ P +V+ + + + +L Y+ R + ++ AH + R
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 49.9 bits (118), Expect = 6e-06
Identities = 65/429 (15%), Positives = 128/429 (29%), Gaps = 123/429 (28%)
Query: 1048 MTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEK-VLDSLKDHALERK 1106
+ + Y+D++ F+ F K V D K ++ K
Sbjct: 11 TGEHQYQYKDILSV-------------FE-------DAFVDNFDCKDVQDMPK--SILSK 48
Query: 1107 AEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDK--LPTRIFFHALERKAE 1164
E D I+ ++ + K + KF +E ++ L + I +R+
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPS 106
Query: 1165 FDPIMACDCRE---NEPVKMNELIFPKAT----KKFMKFRD---EFGPVDKLPTRIFLNG 1214
M + R+ N+ +F K + ++K R E P + ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQ-----VFAKYNVSRLQPYLKLRQALLELRPAKN----VLIDG 157
Query: 1215 -PNIG-----------EEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNT 1262
G + C+ + L++ N + TV + L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLK---NCNSPETVLEMLQKLLYQID 210
Query: 1263 YNLQQILKTSPS------DVFAFLR-LKSERIFLNG---------PNIGEEF--SCEFKT 1304
N S + + A LR L + + N F SC K
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KI 268
Query: 1305 GDTAYVTT--LSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKL----------KLRSKA 1352
+TT +++ L+ T + +L ++ K L L +
Sbjct: 269 ----LLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1353 DSDTAGEIGAPMPGNIIEVKVKVG----QQVKKNDVLIVMSVMKTETLIHASAD----GV 1404
+ P +II ++ G K ++ K T+I +S +
Sbjct: 323 LT------TNPRRLSIIAESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAE 370
Query: 1405 VKEIFVEVG 1413
+++F +
Sbjct: 371 YRKMFDRLS 379
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 61.4 bits (150), Expect = 9e-10
Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 27/194 (13%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P P L ++ + K P+ + + + + + PV++KA G
Sbjct: 82 PNPQALYVKKSRIREKLFLKKHGFPVPE--FLVIKRDE-IIDALKSFKLPVVIKAEKLGY 138
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVV 278
G+G + + + + + K++ ++E+++ I + D+ G
Sbjct: 139 DGKGQYRIKKLEDAN--------QVVKNHDKEESFIIEEFVKFEAEISCIGVRDREGKTY 190
Query: 279 H--LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLL 334
+ + P E + RL + L G VEF L
Sbjct: 191 FYPQPF---NKHEEGILIYNYVPYA-----KLKEAEEITKRLMELLDI--VGVFTVEFFL 240
Query: 335 DKDDNFYFIEVNPR 348
KD E PR
Sbjct: 241 LKDGRVLINEFAPR 254
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 60.5 bits (146), Expect = 1e-09
Identities = 31/225 (13%), Positives = 78/225 (34%), Gaps = 37/225 (16%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
+ V + + G VL+ D+ L R KA + + P +V E D++
Sbjct: 78 IELVENMKVPYFGNK-RVLRWESDRNLERKWLKKAGIRV------P-----EVYEDPDDI 125
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID------- 260
E PVI+K GG+G + + + ++ ++ +++Y+
Sbjct: 126 EKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DLKNIQIQEYVLGVPVYPH 184
Query: 261 ---RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAP----AQDMSVSVRDAITE 313
E++++ ++ + + Q + ++ + +R+++
Sbjct: 185 YFYSKVREELELMSIDRRYESNVDAIGR-IPAKDQLEFDMDITYTVIGNIPIVLRESLLM 243
Query: 314 TSVRLAKSL---------GYSNAGTVEFLLDKDDNFYFIEVNPRL 349
+ + + G +E + D F E++ R+
Sbjct: 244 DVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARI 288
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 61.7 bits (151), Expect = 1e-09
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 46/217 (21%)
Query: 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253
VT ++ E E+ +P++++A++ GGR M +V + E + +R A++ +
Sbjct: 695 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EADLRRYFQTAVSVSNDAPV 750
Query: 254 LVEKYIDRPRHIEVQILGDKYG-DVV------HLYER------D--CSMQRRYQKVIQIA 298
L++ ++D ++V + D G V+ H+ E+ D CS+
Sbjct: 751 LLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHI-EQAGVHSGDSACSL----------- 796
Query: 299 PAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT- 354
PA +S ++D + + +LA L G N V+F + K++ Y IEVNPR T
Sbjct: 797 PAYTLSQEIQDVMRQQVQKLAFELQVRGLMN---VQFAV-KNNEVYLIEVNPR--AARTV 850
Query: 355 --LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITP 389
+S + TG+ + + ++ GKSL E G+ +E I P
Sbjct: 851 PFVS-KATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Score = 42.1 bits (100), Expect = 0.002
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 52/219 (23%)
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214
G+ IG + + D+ A K + +++ +V FP I++
Sbjct: 112 GVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI--AHTMEEALAVAADVGFPCIIR 169
Query: 215 AAF--GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD 272
+F GG G G + N E F+ + L ++L+++ + + E++++ D
Sbjct: 170 PSFTMGGSGGG--IAYN----REEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRD 223
Query: 273 KYGDVVHLYERDCSMQRRYQKV----------IQIAPAQ-----------DMSVSVRDAI 311
K + + + CS+ + I +APAQ + S++V I
Sbjct: 224 KNDNCIIV----CSI----ENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREI 275
Query: 312 -TETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPR 348
ET G SN V+F ++ K+ IE+NPR
Sbjct: 276 GVET--------GGSN---VQFAVNPKNGRLIVIEMNPR 303
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 60.3 bits (147), Expect = 2e-09
Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 30/196 (15%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
+V + D++ + K +P P + + + + D + I+K GG
Sbjct: 69 VNRDVFPIIADRLTQKQLFDKLHLPTAP--WQLLAERSEWPAVFDRLGELAIVKRRTGGY 126
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG + + + +G + +VE+ I+ + + G V
Sbjct: 127 DGRGQWRLRANETEQ--------LPAECYG--ECIVEQGINFSGEVSLVGARGFDGSTVF 176
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
L ++ + +A Q + + E + + LGY G +E +
Sbjct: 177 YPLTH---NLHQDGILRTSVAFPQ-ANAQQQARAEEMLSAIMQELGY--VGVMAMECFVT 230
Query: 336 KDDNFYFIEVN---PR 348
+ +N PR
Sbjct: 231 PQG----LLINELAPR 242
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 59.2 bits (143), Expect = 3e-09
Identities = 43/314 (13%), Positives = 98/314 (31%), Gaps = 54/314 (17%)
Query: 66 SEVAIRVARACNEMGIKSVGIYSEQ-DKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124
S ++ + + G +V I + D D+ V + +I
Sbjct: 26 SHTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDN-------FSDIKNEEI 78
Query: 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADV 184
K +++I +G + G +L+ ++ L +A +
Sbjct: 79 QEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFGNR-RILRWESERSLEGKLLREAGL 137
Query: 185 PIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE- 243
+ P ++++ VI+K GGRG + ++ + + + +
Sbjct: 138 RVPKKYESP-----------EDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRG 186
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ---IAPA 300
L + +E+Y+ + + D V L M +RY+ I PA
Sbjct: 187 ILTDEDIANAHIEEYVVGT-NFCIHYFYSPLKDEVEL----LGMDKRYESNIDGLVRIPA 241
Query: 301 QDM---------------SVSVRDAITETSVRLAKSL----------GYSNAGTVEFLLD 335
+D V +R+++ + L G ++ L +
Sbjct: 242 KDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCN 301
Query: 336 KDDNFYFIEVNPRL 349
++ E++ R+
Sbjct: 302 ENLELVVFEMSARV 315
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 59.0 bits (142), Expect = 4e-09
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 25/203 (12%)
Query: 154 AGLEFIG-PAPNVLKTL---GDKVLARDAALKADVPIIPGTTEPVTD---VDKVKEFCDE 206
GL++ G PA N L ++ K +K + P+ + K
Sbjct: 109 IGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL-GPEKFPLVEQTFFPNHKPMVTA 167
Query: 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIE 266
FPV++K G G V N+ ++ + + K E +ID I
Sbjct: 168 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITS------VVAMAKTYATTEAFIDSKYDIR 221
Query: 267 VQILGDKYGDVVHLYERDCSMQRRYQKVIQ--IAPAQDMSVSVRDAITETSVRLAKSLGY 324
+Q +G Y M+ + A V++ + ++ G
Sbjct: 222 IQKIGSNYK---------AYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGG 272
Query: 325 SNAGTVEFLLDKDDNFYFIEVNP 347
+ V+ + KD Y IEV
Sbjct: 273 LDICAVKAVHSKDGRDYIIEVMD 295
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 58.0 bits (141), Expect = 8e-09
Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 26/189 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + + D+ +PV +K A G G++ V +
Sbjct: 132 DKSLTYIVAKNAGIATPAFWV--INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSA 187
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVV----------- 278
D ++ + A D +L+E+ + + +LG+ VV
Sbjct: 188 DELDYAIESA-------RQYDSKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYG 239
Query: 279 -HLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337
++ ++ + + PA D+S R I ET ++ K+LG V+ L +
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDN 298
Query: 338 DNFYFIEVN 346
EVN
Sbjct: 299 GRIVLNEVN 307
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 57.6 bits (140), Expect = 1e-08
Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 32/192 (16%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + T VT +K+ D++ +PV +K A G G+ VA +
Sbjct: 132 DKSLTYLVARSAGIATPNFWT--VTADEKIPT--DQLTYPVFVKPARSGSSFGVSKVARE 187
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL--------- 280
+ ++ + A D +L+E+ + I ++G+ +
Sbjct: 188 EDLQGAVEAA-------REYDSKVLIEEAVI-GTEIGCAVMGNGPELITGEVDQITLSHG 239
Query: 281 ---YE---RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
S + PA D+S + R + +T+ + ++LG V+ L
Sbjct: 240 FFKIHQESTPESGSDNSAVTV---PA-DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFL 295
Query: 335 DKDDNFYFIEVN 346
+D EVN
Sbjct: 296 TEDGKVVLNEVN 307
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 56.7 bits (138), Expect = 2e-08
Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK +++ + + D + D++ FP+++K GG G+++V +K
Sbjct: 97 DKNISKKILRYEGIETPDWIELTKME-DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDK 155
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL---------- 280
D + + + ++++EKYI I I K ++ +
Sbjct: 156 DELISMLETV-----FEWD-SEVVIEKYIK-GEEITCSIFDGKQLPIISIRHAAEFFDYN 208
Query: 281 --YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD 338
Y+ + ++ +++ + + S+ K+L S V+ ++ D
Sbjct: 209 AKYDDAST---------IEEVI-ELPAELKERVNKASLACYKALKCSVYARVDMMVK-DG 257
Query: 339 NFYFIEVN 346
Y +EVN
Sbjct: 258 IPYVMEVN 265
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 57.2 bits (139), Expect = 2e-08
Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 38/196 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK +A+ A + + P D + P+ +K A G G+
Sbjct: 159 DKDMAKRVLRDARLAVAPFVC--FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQ 216
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
V DA A D +LVE + R IE +LG+
Sbjct: 217 VRTADAFAAALALA-------LAYDHKVLVEAAVA-GREIECAVLGNAVPHASVCGEVVV 268
Query: 281 ----------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330
Y + + + PA D+ + I + +V+ ++LG + V
Sbjct: 269 HDAFYSYATKYISEHGAEI-------VIPA-DIDAQTQQRIQQIAVQAYQALGCAGMARV 320
Query: 331 EFLLDKDDNFYFIEVN 346
+ L D EVN
Sbjct: 321 DVFLCADGRIVINEVN 336
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 56.8 bits (138), Expect = 2e-08
Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 38/196 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK +A+ A + I P T +T ++ EVE P+ +K A G G+
Sbjct: 140 DKDVAKRLLRDAGLNIAPFIT--LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSK 197
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
VAN+ ++ A F D ++VE+ I R IE +LG+
Sbjct: 198 VANEAQYQQAVALA-------FEFDHKVVVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249
Query: 281 ----------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330
Y D Q + PA + V D I +++ ++LG + V
Sbjct: 250 NSEFYAYDTKYIDDNGAQV-------VVPA-QIPSEVNDKIRAIAIQAYQTLGCAGMARV 301
Query: 331 EFLLDKDDNFYFIEVN 346
+ L D+ E+N
Sbjct: 302 DVFLTADNEVVINEIN 317
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 56.9 bits (138), Expect = 2e-08
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 20/186 (10%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVK-EFCDEVEFPVILKAAFGGGGRGMRMVAN 229
+K L + A + + + + ++ FP I+K + G G+ +V
Sbjct: 149 NKYLTKLYAKDLGIKTLDYVL--LNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVKE 206
Query: 230 KDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM- 287
+ + A F +L+E +I + + K E
Sbjct: 207 EKELIYALDSA-------FEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQE 259
Query: 288 ----QRRYQ--KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFY 341
+++Y + A +S ++ + + E +L L +F + ++ Y
Sbjct: 260 FLDFKQKYLDFSRNKAPKA-SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVY 317
Query: 342 FIEVNP 347
E+NP
Sbjct: 318 LNEINP 323
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 56.4 bits (137), Expect = 2e-08
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 38/192 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L++ +A VP++P V + + P +K A G G+ V
Sbjct: 118 DKDLSKRVLAQAGVPVVPWVA--VRKGEPPVV---PFDPPFFVKPANTGSSVGISRVERF 172
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL--------- 280
+E A F D+ +VEK + R +EV +LG+ +G+ +
Sbjct: 173 QDLEAALALA-------FRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPF 225
Query: 281 ------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y + + I PA + ++ + E +++ K LG V+F L
Sbjct: 226 YDYETKYTPGRA-------ELLI-PA-PLDPGTQETVQELALKAYKVLGVRGMARVDFFL 276
Query: 335 DKDDNFYFIEVN 346
+ Y E+N
Sbjct: 277 A-EGELYLNELN 287
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 56.4 bits (137), Expect = 2e-08
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 818 SLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT 877
S +Y + L + L + + + L D G+L P + S +KYP+I H H+
Sbjct: 167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDL 226
Query: 878 GVATTLACVKAGADIVDV 895
VA +L ++AG +
Sbjct: 227 SVANSLQAIRAGVKGLHA 244
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 56.5 bits (137), Expect = 3e-08
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 823 EDLAKQ---LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTG 878
E LA+Q + GA + + D G + + + +F+ + +H H G
Sbjct: 149 EKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLG 208
Query: 879 VATTLACVKAGADIVDVAADSMSGI------CSQPAMGTIVSCLENTDKRCGIDLHDVCD 932
VA ++ V+ G D VD S++G+ + ++ E G DL+ + D
Sbjct: 209 VANSIVAVEEGCDRVDA---SLAGMGAGAGNA---PLEVFIAVAERLGWNHGTDLYTLMD 262
Query: 933 YSSYWRKVREL 943
+ VR L
Sbjct: 263 AAD--DIVRPL 271
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 55.2 bits (132), Expect = 6e-08
Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 27/202 (13%)
Query: 155 GLEFIG-PAPNVLKTL---GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV--- 207
G+++ G P+ N L+++ DK + + G P+ + + +
Sbjct: 93 GMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTL-GGEKFPLIEQTYYPNHREMLTLP 151
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEV 267
FPV++K G G V N ++ + + + E +ID I V
Sbjct: 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIAS------VVALTQTYATAEPFIDAKYDIRV 205
Query: 268 QILGDKYGDVVHLYERDCSMQRRYQK---VIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
Q +G+ Y + R A +++ D ++ G
Sbjct: 206 QKIGNNYK----------AYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGG 255
Query: 325 SNAGTVEFLLDKDDNFYFIEVN 346
+ V+ + KD Y EV
Sbjct: 256 LDICAVKAVHGKDGKDYIFEVM 277
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 55.7 bits (135), Expect = 6e-08
Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 53/204 (25%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-----FPVILKAAFGGGGRGMR 225
+K L + +P++ T ++ D + + + +KA G
Sbjct: 140 EKDLTKTVLRAGGIPVVDWHT--LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATL 197
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGD------------ 272
V + + K F DD ++VE I R IE +LG+
Sbjct: 198 PVKTETEFTKAVKEV-------FRYDDRLMVEPRIR-GREIECAVLGNGAPKASLPGEII 249
Query: 273 ----------KYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322
KY D D+S SV I + ++ K +
Sbjct: 250 PHHDYYSYDAKYLDP--------------NGATTTTSV-DLSESVTKQIQQIAIDAFKMV 294
Query: 323 GYSNAGTVEFLLDKDDNFYFIEVN 346
S V+F + ++ E+N
Sbjct: 295 HCSGMARVDFFVTPNNKVLVNEIN 318
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 54.9 bits (133), Expect = 9e-08
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 171 DKVLARDAALKADVPIIPGTT----EPVTDVDKV-KEFCDEVEFPVILKAAFGGGGRGMR 225
DK++ + +P +P + E + K D++ +PV +K A G G+
Sbjct: 129 DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGIS 188
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERD 284
N+ ++E K A F D +++E+ ++ R IEV +LG+ Y + E
Sbjct: 189 KCNNEAELKEGIKEA-------FQFDRKLVIEQGVN-AREIEVAVLGNDYPEATWPGEVV 240
Query: 285 CSM-----QRRYQ--KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337
+ + +Y+ KV PA D+ V+ + ++ K+ S +F + +D
Sbjct: 241 KDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTED 299
Query: 338 DNFYFIEVN 346
+ Y E N
Sbjct: 300 NQIYINETN 308
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 55.0 bits (133), Expect = 1e-07
Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 54/204 (26%)
Query: 171 DKVLARDAALKA-DVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMR 225
DK+ A +P + + + + ++ EVE +PV +K A G G+
Sbjct: 161 DKITTNQVLESATTIPQVAYVA--LIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 218
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGD------------ 272
N+ +++ A D +L+E+ +D R IEV ILG+
Sbjct: 219 KAENRTDLKQAIALA-------LKYDSRVLIEQGVD-AREIEVGILGNTDVKTTLPGEIV 270
Query: 273 ----------KYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322
KY D K+ PA ++ + + + + + ++L
Sbjct: 271 KDVAFYDYEAKYID---------------NKITMAIPA-EIDPVIVEKMRDYAATAFRTL 314
Query: 323 GYSNAGTVEFLLDKDDNFYFIEVN 346
G +F L +D Y E+N
Sbjct: 315 GCCGLSRCDFFLTEDGKVYLNELN 338
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 52.6 bits (127), Expect = 6e-07
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I++ VK G +V ++DVL + K I + G V EI V G ++ L
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 76
Query: 1426 DV 1427
D
Sbjct: 77 DA 78
Score = 31.4 bits (72), Expect = 2.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
EI +P+ G ++E+ V G LI +
Sbjct: 47 EIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 50.9 bits (123), Expect = 1e-06
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+ +QL G + L D G P ++ + P + H HD G +
Sbjct: 159 SVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIR 218
Query: 884 ACVKAGADIVDVAADSMSGI--CSQP----AMGTI-----VSCLENTDKRCGIDLHDVCD 932
++ G + D S+ G+ C P A G + V L G+DL +
Sbjct: 219 VSLEKGLRVFDA---SVGGLGGC--PFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRS 273
Query: 933 YSSYWRKV-RELYAPAHNLL 951
+ + + ++ A H+
Sbjct: 274 AGLFTQALRQDKAALEHHHH 293
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 51.5 bits (124), Expect = 1e-06
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK + +P+ ++ C+ + PV +K A GG G+ V++
Sbjct: 151 DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW 210
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDV-------VHLYE 282
D + RA D ++VE I R +E +L G + + +
Sbjct: 211 DQLPAAVARA-------RRHDPKVIVEAAIS-GRELECGVLEMPDGTLEASTLGEIRVAG 262
Query: 283 RDCSMQRRY--------QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y PA + V +AI + ++R ++ V+F L
Sbjct: 263 VRGREDSFYDFATKYLDDAAELDVPA-KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321
Query: 335 DKDDNFYFIEVN 346
DD E+N
Sbjct: 322 T-DDGPVINEIN 332
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 51.4 bits (122), Expect = 2e-06
Identities = 59/346 (17%), Positives = 106/346 (30%), Gaps = 35/346 (10%)
Query: 10 TTMLGFLGATRHAMKSLTRWIRPNLLVQQQRFPVRRCGCKPPPPPKTMEKILIANRSEVA 69
+ GF + +A+K T Q G ++I
Sbjct: 72 SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGS----GGAGRGGAAARVLLVIDEPHTDW 127
Query: 70 IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNN 129
+ + G + I EQ +FS G + N +++ ++
Sbjct: 128 AKYFKGKKIHG--EIDIKVEQAEFSDLNLVA---HANGGFSVDMEVLRNGVKVV---RSL 179
Query: 130 NVDAIHPGYGFLSEREDFAKAVIGAGLEFIG-PAPNVLKTLG---DK--VLARDAALKAD 183
D + S + + GL++ G P+ N L ++ DK V A+ L
Sbjct: 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKK 239
Query: 184 VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE 243
+ T KE +PV++K G G V N+ ++
Sbjct: 240 LGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQD------IA 293
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ--IAPAQ 301
++ + K E +ID + VQ +G Y M+ + A
Sbjct: 294 SVVALTKTYATAEPFIDAKYDVRVQKIGQNYK---------AYMRTSVSGNWKTNTGSAM 344
Query: 302 DMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
+++ D ++ G + VE L KD + IEV
Sbjct: 345 LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVG 390
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI,
protein struct initiative, northeast structural genomics
consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Length = 307
Score = 50.6 bits (122), Expect = 2e-06
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
L++ L E G L L D G P + ++ + ++P I +H HD GT +A +
Sbjct: 161 RLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMV 220
Query: 884 ACVKAGADIVD 894
++ G + D
Sbjct: 221 TALQMGITVFD 231
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase,
ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB:
3mp3_A* 3mp4_A 3mp5_A*
Length = 298
Score = 50.2 bits (121), Expect = 2e-06
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
++ K+ G + L D G+ P K ++ + ++ P + VH HD G +A TL
Sbjct: 160 EVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTL 219
Query: 884 ACVKAGADIVD 894
++ G +VD
Sbjct: 220 MALQMGVSVVD 230
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein
structure initiativ midwest center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 302
Score = 50.2 bits (121), Expect = 2e-06
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+A++L + G + L D G+ A + LI + + P + H HD G +A
Sbjct: 163 WVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIY 222
Query: 884 ACVKAGADIVD 894
A + G + D
Sbjct: 223 ASLLEGIAVFD 233
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 44.1 bits (105), Expect = 1e-05
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
P P + ++VGQ+V D L ++ MK I A G VK I VE G V
Sbjct: 18 TPSPDA--KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPV 70
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 46.0 bits (110), Expect = 6e-05
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 823 EDLAK--QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGV 879
+DL + V + L D G+ P L+ R + I H H+ G +
Sbjct: 145 QDLLAVYEAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAI 204
Query: 880 ATTLACVKAGADIVDVAADSMSGI 903
A ++AGA VD ++ GI
Sbjct: 205 ANAYEAIEAGATHVDT---TILGI 225
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM
barrel, catalytic domain, dimer, leucine biosynthesis,
ketoisovalerate; 1.95A {Neisseria meningitidis}
Length = 370
Score = 44.4 bits (106), Expect = 2e-04
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+E+GA + + D G P + K PN + H H+ G VA +LA +
Sbjct: 167 IEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAAL 226
Query: 887 KAGADIVDV 895
K GA V+
Sbjct: 227 KGGARQVEC 235
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 40.3 bits (95), Expect = 2e-04
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I+ VK G V+K+ L+ + K I + G + +I G V ++ +
Sbjct: 16 GEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQI 75
Query: 1426 D 1426
D
Sbjct: 76 D 76
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1
PDB: 1k8o_A
Length = 93
Score = 40.0 bits (94), Expect = 3e-04
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ E VK G V + D + + K I + DGV+K+++ + +V +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
Query: 1426 DV 1427
+
Sbjct: 79 ET 80
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 43.4 bits (103), Expect = 4e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
+ G + + D G P LI + R + I H H+ G +A ++AG
Sbjct: 190 DKIGVNRVGIADTVGCATPRQVYDLIRTLRGV-VSCDIECHFHNDTGMAIANAYCALEAG 248
Query: 890 ADIVDVAADSMSGI 903
A +D S+ GI
Sbjct: 249 ATHIDT---SILGI 259
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 42.5 bits (101), Expect = 7e-04
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+++GA V+ + D G PT L R + + H HD G A LA +
Sbjct: 160 IDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAI 219
Query: 887 KAGADIVDV 895
+ GA V+
Sbjct: 220 ENGARRVEG 228
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural
genomics, protein structure initiative; 2.78A {Cytophaga
hutchinsonii atcc 33406}
Length = 325
Score = 42.5 bits (101), Expect = 7e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+E+GA V+ + D G + P I + NI ++ H H+ G A +LA +
Sbjct: 161 IEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAAL 220
Query: 887 KAGADIVDV 895
+ GA V+
Sbjct: 221 QNGARQVEC 229
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure initiative;
2.80A {Cupriavidus metallidurans}
Length = 359
Score = 38.9 bits (91), Expect = 0.009
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 1349 RSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388
+AD ++ P+ G I+ + ++G +VK DVL +
Sbjct: 49 MIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTI 88
Score = 32.0 bits (73), Expect = 1.6
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
+ G + + ++G +V D++ +D
Sbjct: 60 VLPPLAGRIVSLNKQLGDEVKAGDVLFTID 89
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 38.6 bits (90), Expect = 0.011
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388
++GA + G I ++ VK+GQQVKK D+L +
Sbjct: 34 DVGAQVSGKITKLYVKLGQQVKKGDLLAEI 63
Score = 31.7 bits (72), Expect = 1.9
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 1370 EVKVKVGQQVKKNDVLIVMSVMKTETL-------IHASADGVVKEIFVEVGGQVAQNDLV 1422
+ ++VK+ + I +V+ T ++ + A G + +++V++G QV + DL+
Sbjct: 4 DTTYLT-EEVKRGN--IEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLL 60
Query: 1423 VVLDV 1427
+D
Sbjct: 61 AEIDS 65
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 37.9 bits (88), Expect = 0.013
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
GNI++ K G+ V D L + K + AS DG++ +I VE G + +
Sbjct: 18 GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR 70
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane
fusion protein, drug efflux pump, periplasmic protein;
2.99A {Escherichia coli}
Length = 341
Score = 37.7 bits (88), Expect = 0.021
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388
++GA + G + + V +G +VKK+ +L V+
Sbjct: 33 DVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62
Score = 31.2 bits (71), Expect = 2.3
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETL-------IHASADGVVKEIFVEVGG 1414
AP+P + V+ D + SV+ T L + A G +K + V +G
Sbjct: 1 APVP----TYQT---LIVRPGD--LQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGD 51
Query: 1415 QVAQNDLVVVLD 1426
+V ++ L+ V+D
Sbjct: 52 KVKKDQLLGVID 63
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 38.0 bits (88), Expect = 0.028
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-FPVILKAAFGGGGRG---MRM 226
+KV+ + + P G TD + + +++ P+++K G G +
Sbjct: 484 NKVVTKKILDEKHFPTPFGDE--FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKT 541
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYI 259
AN + E+ A +E +LVE+YI
Sbjct: 542 SANLASYEKAIDIAFTED------SAILVEEYI 568
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 37.5 bits (87), Expect = 0.037
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 854 LIGSFREKYPN---ILIHVHTHDMAGTGVATTLACVKAGADIV 893
I N +++ +H H+ GT VA AGAD +
Sbjct: 266 SIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 308
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics,
joint center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Length = 331
Score = 36.8 bits (84), Expect = 0.042
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVL-IVMSVMKTETL---IHASADGVVKEIFVEVGGQ 1415
+ + G + E+ + +G+ V++ D++ V S +T A GV+ I G
Sbjct: 260 LFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVL--ISRHFPGM 316
Query: 1416 VAQNDLVVVL 1425
+ D V+
Sbjct: 317 IKSGDCAAVI 326
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 36.8 bits (84), Expect = 0.047
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVL-IVMSVMKTETL---IHASADGVVKEIFVEVGGQ 1415
+ +P PG I E + V +V++ DV+ ++ + I A + V +
Sbjct: 260 LKSPSPG-IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTV--FAIRSAMY 316
Query: 1416 VAQNDLVVVL 1425
V N+ V +L
Sbjct: 317 VQGNEEVAIL 326
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens}
SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B*
1fyc_A
Length = 128
Score = 34.7 bits (80), Expect = 0.047
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 1333 GQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMP--------GNIIEVKVKVGQQVKKNDV 1384
G + +L+ S + +P G + + KVG+++ + D+
Sbjct: 1 GGSHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 60
Query: 1385 LIVM----SVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVVL 1425
L + + + E +G + +I V G + V + ++
Sbjct: 61 LAEIETDKATIGFE----VQEEGYLAKILVPEGTRDVPLGTPLCII 102
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 36.1 bits (84), Expect = 0.070
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
A+ L ++GA C+ D+A + K + S R+ + I MAG VA
Sbjct: 105 AEALRDAGADFFCV-DVAHAHAKYVGK------TLKSLRQLLGSRCI------MAGN-VA 150
Query: 881 T---TLACVKAGADIVDV 895
T GADI+
Sbjct: 151 TYAGADYLASCGADIIKA 168
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 36.1 bits (83), Expect = 0.10
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 170 GDKVLARDAALKADVPIIPGTTEPVTDVDK-VKEFCDEVEFPVILKAAFGGGGRG----M 224
+KV+ + KA + T ++K V + V++K G G
Sbjct: 488 ENKVVTKKVLQKAGFNVPQSVE--FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQ 545
Query: 225 RMVANKDAIEENFKRAQSEALASFGKDDMLVEKYI 259
+ V N++ + + A E +++VE Y+
Sbjct: 546 QGVQNREDFAKALEIAFRED------KEVMVEDYL 574
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB:
3lwu_A*
Length = 368
Score = 35.3 bits (80), Expect = 0.14
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVL------IVMSVMKTETLIHASADGVVKEIFVEVG 1413
AP G ++E KVG +K D L + + T++ DGV I
Sbjct: 293 FHAPKAG-MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVP--ILHFAS 349
Query: 1414 GQVAQNDLVVVL 1425
V Q + +
Sbjct: 350 ASVHQGTELYKV 361
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 35.2 bits (80), Expect = 0.16
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVL-IVMSVMKTETL---IHASADGVVKEIFVEVGGQ 1415
+ AP G + E VG++V+ + + V +T + DG+V F G+
Sbjct: 270 VMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIV--WFGAGPGR 326
Query: 1416 VAQNDLVVVL 1425
V + D V V+
Sbjct: 327 VTRGDAVAVV 336
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Length = 463
Score = 35.1 bits (80), Expect = 0.18
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 13/107 (12%)
Query: 1092 EKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDE-----FGP 1146
+ + +L+ H ++A + +R D ++K + + +K + E G
Sbjct: 164 DDPVSTLEHHRKAKEAVEGVTILPTWRPDRAMNVDKEGWREYVEKMGERYGEDTSTLDGF 223
Query: 1147 VDKLPTRI-FFHALERKAE---FDPIMACDCRENEPVKMNELIFPKA 1189
++ L F A EN + KA
Sbjct: 224 LNALWKSHEHFKEHGCVASDHALLEPSVYYVDENRA----RAVHEKA 266
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module,
bacterial pathogen, sialic acid, sugar-binding protein;
HET: SIA; 2.2A {Clostridium perfringens}
Length = 191
Score = 33.6 bits (76), Expect = 0.25
Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 1221 FSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLY-----NGLHTTNTYNLQQILKTSPSD 1275
F DT+ + + +S + + F LY G +D
Sbjct: 44 IVTRFNMNDTSIQSLIGLS---DGNKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSAD 100
Query: 1276 V----------FAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGER 1325
V + +IFLNG + K + + + I + +G
Sbjct: 101 VTFNRGINTLALKIEKGIGAKIFLNGSLVKTVSDPNIKFLNAINLNSGFIGKTDRANGYN 160
Query: 1326 TVFFLYNGQLRSL 1338
F G + +
Sbjct: 161 EYLF--RGNIDFM 171
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 33.4 bits (76), Expect = 0.33
Identities = 21/179 (11%), Positives = 45/179 (25%), Gaps = 21/179 (11%)
Query: 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDL 809
+S + A + G R N+ + + A+++ I Y
Sbjct: 20 HSSFIMSKMALAAYEGGAVGIRA----NTKED----ILAIKETVDLPVIGIVKRDYDHSD 71
Query: 810 TNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHV 869
+ +L+ES +V+ L L+ R PN+ I
Sbjct: 72 VF-------ITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA 124
Query: 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPA-MGTIVSCLENTDKRCGIDL 927
+ + G D + + L++ + +
Sbjct: 125 DIATVEEA-----KNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKV 178
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Length = 79
Score = 30.9 bits (69), Expect = 0.46
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 1316 SEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIE 1370
S H + HG V FL NG+ + +D +K + + + K + G GN+ E
Sbjct: 4 SHHHHHHGSVKVKFLLNGEEKEVDTSKIRDVSRQGKNVKFLYNDNGKYGAGNVDE 58
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP structural genomics, protein
structure initiative; HET: ATP; 2.50A {Thermococcus
kodakarensis} SCOP: c.30.1.8 d.142.1.9
Length = 320
Score = 33.4 bits (76), Expect = 0.46
Identities = 30/207 (14%), Positives = 58/207 (28%), Gaps = 47/207 (22%)
Query: 164 NVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRG 223
LK L A A +P + D+ ++ GG G
Sbjct: 91 RFLKWETTFELQDKALEGAGIPRVEVVEPEDAKPDE----------LYFVRIEGPRGGSG 140
Query: 224 MRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER 283
+V + E ++ VE++I ++ V + + L
Sbjct: 141 HFIVEGSELEERLSTL----------EEPYRVERFIPGV-YLYVHFFYSPILERLELL-- 187
Query: 284 DCSMQRRYQKVIQIA--PAQDMS--------VSVRDA-------ITETSVRLAKSL---G 323
+ R A P + + +++R++ VR + L G
Sbjct: 188 --GVDERVLIADGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPG 245
Query: 324 YSNAGTVEFLLDKDDNFYFIEVNPRLQ 350
+ F D +F I + R+
Sbjct: 246 VIGPFALHFAY--DGSFKAIGIASRID 270
>2q01_A Uronate isomerase; structural genomics, protein structure initiative
NEW YORK SGX research center for structural genomics,
nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 32.8 bits (74), Expect = 0.97
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 1092 EKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDE-----FGP 1146
E +SL+ HA R++ + + YR D P+A ++F + +
Sbjct: 172 EGPHESLQHHAAIRESGWGGHVITAYRPDAVIDFEDERSPRAFERFAETSGQDVYSWKSY 231
Query: 1147 VDKLPTRI-FFHALERKA---EFDPIMACDCRENEPVKMNELIFPKATKK 1192
++ R F + D + E E +F K
Sbjct: 232 LEAHRLRRQAFIDAGATSSDHGHPTAATADLSDVEA----EALFNSLVKG 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 1.0
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 1339 DKNKAKKLKLRSK---ADSDTAGEIGAPM 1364
+K KKL+ K DS A I A M
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 29.9 bits (68), Expect = 1.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 1374 KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
K G+ VK++++++ + K + A ADGV+ EI G V +L+ L
Sbjct: 24 KPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo sapiens}
Length = 171
Score = 31.4 bits (71), Expect = 1.1
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 1288 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQL 1335
NG G +F + +GD I D +FF NG+
Sbjct: 87 LYNGRAKGRQFGSKCNSGD---RIGCGIEPVSFDVQTAQIFFTKNGKR 131
Score = 30.7 bits (69), Expect = 2.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 1211 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1256
NG G +F + +GD I D +FF NG
Sbjct: 87 LYNGRAKGRQFGSKCNSGD---RIGCGIEPVSFDVQTAQIFFTKNG 129
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 32.1 bits (73), Expect = 1.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1352 ADSDTAGEIGAPMPGNIIEVKVK-VGQQVKKNDVLIVM 1388
+ + A G I +V VG +V+K L+ +
Sbjct: 116 YNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDL 153
Score = 30.2 bits (68), Expect = 5.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 1334 QLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVL 1385
+LR +A +L + T + AP+ G I ++ G + K++V+
Sbjct: 184 RLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVV 235
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (68), Expect = 1.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVM----SVMKTETLIHASADGVVKEIFVEVGGQ-VAQND 1420
GNI++ K G+ V D L + +V+ + AS DG++ +I VE G + +
Sbjct: 22 GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLD----ASDDGILAKIVVEEGSKNIRLGS 77
Query: 1421 LVVVL 1425
L+ ++
Sbjct: 78 LIGLI 82
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 1374 KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
K G V +++VL+ + K + ASADG++ + + G V ++ L
Sbjct: 25 KPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 31.8 bits (73), Expect = 1.6
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 21/82 (25%)
Query: 822 YEDLAKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG 876
+ + LVE+GA VLC+ D + IG REKY + + +
Sbjct: 243 FRERVPALVEAGADVLCI-DSSDGFSEWQKI------TIGWIREKYGDKV------KVGA 289
Query: 877 TGVAT---TLACVKAGADIVDV 895
+ AGAD + +
Sbjct: 290 GNIVDGEGFRYLADAGADFIKI 311
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2,
structure initiative; HET: MSE NAP; 2.79A {Bacillus
subtilis}
Length = 300
Score = 31.7 bits (72), Expect = 1.7
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 1056 RDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH----------ALER 1105
+ D II P S T +G + + L++ LD H LE
Sbjct: 55 EIPFQQIDSIILPVSATT-GEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLEN 113
Query: 1106 KAEFDPIMACDYREDEPF 1123
A E +
Sbjct: 114 IAAQAKRKLVKLFERDDI 131
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic,
structur genomics, PSI-2, protein structure initiative;
HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP:
d.108.1.1 PDB: 3pgp_A*
Length = 160
Score = 30.9 bits (70), Expect = 1.7
Identities = 7/64 (10%), Positives = 18/64 (28%)
Query: 700 LEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759
P+ + + + ++G++N+ + G FC
Sbjct: 17 AGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFC 76
Query: 760 RLAS 763
L +
Sbjct: 77 ALGN 80
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase kinase
isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo
sapiens} PDB: 3crl_C*
Length = 87
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVV 1424
G + + KVG+++ + D+L + +G + +I V G + V + +
Sbjct: 20 GTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 79
Query: 1425 L 1425
+
Sbjct: 80 I 80
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVM----SVMKTETLIHASADGVVKEIFVEVGGQ-VAQND 1420
G I + K G ++ + D++ + + + E + + + +I V G + V
Sbjct: 22 GTIARWEKKEGDKINEGDLIAEVETDKATVGFE----SLEECYMAKILVAEGTRDVPIGA 77
Query: 1421 LVVVL 1425
++ +
Sbjct: 78 IICIT 82
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate
biosynthesis, antibiotic resistance; 2.64A
{Mycobacterium tuberculosis}
Length = 318
Score = 31.4 bits (72), Expect = 2.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
+ GT +A T AGA + +VAA
Sbjct: 268 LEGT-LAATALAAAAGARMFRVHEVAA 293
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes
aegypti}
Length = 217
Score = 30.9 bits (69), Expect = 2.2
Identities = 21/170 (12%), Positives = 49/170 (28%), Gaps = 15/170 (8%)
Query: 182 ADVPIIPGTTEPVTDVDKVKEFC-DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRA 240
+ I + + F VE ++ A + + + +
Sbjct: 30 PEEGITISYVHGKSHTLDDERFSLSFVEQGTVVVAEDSAAKKFIGVSIAGPIQPGDPDAM 89
Query: 241 QSEALASFGKDDMLVEKYIDRPRHIEVQI-LGDKYGDVVHLYERDCSMQRRYQ------- 292
EA + K + K + +E + +YG + ++ Y+
Sbjct: 90 VEEAATTETKKWGDILKLLA---LLERTADVCGRYGLEKAYHVHILAVDPTYRGHSLGQR 146
Query: 293 ---KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN 339
+ ++ D + SV+LA+ LG + +D+
Sbjct: 147 LLQFQMDLSKKLGFKAISGDFTSVFSVKLAEKLGMECISQLALGDYRDEK 196
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA
transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP:
c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A*
3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A*
3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A*
3tyd_A* ...
Length = 297
Score = 31.3 bits (72), Expect = 2.2
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
+ GT AT ++ G + V DV
Sbjct: 255 LEGT-GATVCLGIEKGCEFVRVHDVKE 280
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 31.0 bits (71), Expect = 2.5
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 855 IGSFREKYPNILIHVHTHDMAGTGVAT---TLACVKAGADIVDV 895
+ R+++P I MAG V T + +GADI+ V
Sbjct: 152 VKDVRKRFPQHTI------MAGN-VVTGEMVEELILSGADIIKV 188
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 31.3 bits (70), Expect = 2.5
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
QV + ++ +G+ + P + + H D +
Sbjct: 214 VQVAAYDFPKADPEAPLVEIGMGTIDKSKPFLCVIGHNVAGV--TYMMDYMEDNNLTDKM 271
Query: 894 DVAADSMSGIC 904
++A G+C
Sbjct: 272 EIA-----GLC 277
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family,
structural genomics, PSI, protein structure initiative;
1.41A {Pseudomonas aeruginosa PAO1}
Length = 182
Score = 30.5 bits (69), Expect = 2.6
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 700 LEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759
P+ + + + ++G++N+ + G FC
Sbjct: 39 AGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFC 98
Query: 760 RL 761
L
Sbjct: 99 AL 100
>2qsx_A Putative transcriptional regulator, LYSR family; the putative
transcriptional regulator, PSI-2, structure initiative,
MCSG; 1.64A {Vibrio parahaemolyticus}
Length = 218
Score = 30.7 bits (70), Expect = 2.6
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 828 QLVESGAQVLCLKDMAGLLK----PT-AAKLLI---GSFREKYPNILIHVHTH----DMA 875
+ + A ++ LL P+ A+ L+ F +++PNI + + T
Sbjct: 3 AIQHATASLIQTNTDQELLVVDVTPSFASLWLVPNINDFHQRHPNIRVKILTGDGAVKNI 62
Query: 876 GTGV 879
Sbjct: 63 HGES 66
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 31.2 bits (70), Expect = 2.8
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 783 VKGMDAVQQVTGGSTIVEATICYAGD-LTNPNKK 815
D + + G I + + L NP+ K
Sbjct: 333 TDNEDFLADLKVGDVIESIQVVSGLENLANPSYK 366
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 30.4 bits (68), Expect = 3.3
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 49 KPPPPPKTMEKILIANRSEVAIRVARACNEMGIKSVGIY 87
+ P E + NR +M + G Y
Sbjct: 39 RFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRY 77
>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex
with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus
aureus} SCOP: c.1.21.1 PDB: 1ad4_A*
Length = 266
Score = 30.5 bits (70), Expect = 3.4
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
T ATT + G V +V
Sbjct: 219 DEVT-AATTAYGIMKGVRAVRVHNVEL 244
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis;
HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Length = 294
Score = 30.6 bits (70), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
+A + VA L V+ GA IV DVAA
Sbjct: 251 VAAS-VAAALCAVERGAAIVRVHDVAA 276
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 30.7 bits (69), Expect = 4.0
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 822 YEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHD 873
+L + L G +P + +G + NI ++ H
Sbjct: 209 PTNLILGGLRVAMADLDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPM 268
Query: 874 MA 875
++
Sbjct: 269 LS 270
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase;
HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.21.1
Length = 280
Score = 30.2 bits (69), Expect = 4.1
Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
T + GA V DV A
Sbjct: 234 DTAT-AVISALAALHGAWGVRVHDVRA 259
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A
{Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Length = 294
Score = 30.2 bits (69), Expect = 4.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
+ G+ VA L V G ++ DV A
Sbjct: 249 VHGS-VAAHLFAVMKGVRLLRVHDVRA 274
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 30.3 bits (69), Expect = 5.0
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
K LVE+G VL + D + G+L+ I R YP++ I + G VA
Sbjct: 113 VKALVEAGVDVLLI-DSSHGHSEGVLQ------RIRETRAAYPHLEI------IGGN-VA 158
Query: 881 T---TLACVKAGADIVDV 895
T A ++AG V V
Sbjct: 159 TAEGARALIEAGVSAVKV 176
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 30.2 bits (69), Expect = 5.2
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
++LV++ +L + D A +++ LI + KYPN+ + +AG +
Sbjct: 158 VEELVKAHVDILVI-DSAHGHSTRIIE------LIKKIKTKYPNLDL------IAGN-IV 203
Query: 881 T---TLACVKAGADIVDV 895
T L + GAD + V
Sbjct: 204 TKEAALDLISVGADCLKV 221
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A
{Mycoplasma capricolum} SCOP: b.84.3.1
Length = 154
Score = 29.1 bits (66), Expect = 5.6
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 1370 EVKVKVGQQVKKNDVLIVMSV---------MKTETLIHASADGVVKEIFVEVGGQVAQND 1420
E V Q+V D L+ + + +K+ + + K + + G+V Q D
Sbjct: 92 ESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGG---KTLEIVKMGEVKQGD 148
Query: 1421 LVVVL 1425
+V +L
Sbjct: 149 VVAIL 153
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 30.2 bits (69), Expect = 5.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
LV++ + L D A G++ + R KYP++ I +AG VA
Sbjct: 261 IDALVKASVDAIVL-DTAHGHSQGVID------KVKEVRAKYPSLNI------IAGN-VA 306
Query: 881 T---TLACVKAGADIVDV 895
T T A ++AGA++V V
Sbjct: 307 TAEATKALIEAGANVVKV 324
>3te4_A GH12636P, dopamine N acetyltransferase, isoform A; dopamine/acetyl
COA, N-acetyltransferase domain; HET: ACO; 1.46A
{Drosophila melanogaster}
Length = 215
Score = 29.7 bits (66), Expect = 5.7
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 2/120 (1%)
Query: 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQ--ILGDKYGDVVHLYERDCSM 287
D E+ + VE+ + + IL K V Y
Sbjct: 84 DDVPEKAADSCEHPKFKKILSLMDHVEEQFNIFDVYPDEELILDGKILSVDTNYRGLGIA 143
Query: 288 QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
R ++ + ++V + S R+ + LG+ ++F K +
Sbjct: 144 GRLTERAYEYMRENGINVYHVLCSSHYSARVMEKLGFHEVFRMQFADYKPQGEVVFKPAA 203
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 30.2 bits (69), Expect = 5.8
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
++LV++G V+ + D A +++ + + YP++ + +AG VA
Sbjct: 242 VEKLVKAGVDVIVI-DTAHGHSRRVIE------TLEMIKADYPDLPV------VAGN-VA 287
Query: 881 T---TLACVKAGADIVDV 895
T T A +KAGAD V V
Sbjct: 288 TPEGTEALIKAGADAVKV 305
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 29.9 bits (68), Expect = 5.9
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 24/82 (29%)
Query: 824 DLAKQLVESG--AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG 876
+ +QL + + + D+A ++ +I ++ P + +AG
Sbjct: 109 EFVQQLAAEHLTPEYITI-DIAHGHSNAVIN------MIQHIKKHLPESFV------IAG 155
Query: 877 TGVAT---TLACVKAGADIVDV 895
V T AGAD V
Sbjct: 156 N-VGTPEAVRELENAGADATKV 176
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 30.1 bits (69), Expect = 5.9
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
A+ L E+GA + + D A G+L+ I R +PN + +AG +A
Sbjct: 238 AEALFEAGADAIVI-DTAHGHSAGVLR------KIAEIRAHFPNRTL------IAGN-IA 283
Query: 881 T---TLACVKAGADIVDV 895
T A AG D+V V
Sbjct: 284 TAEGARALYDAGVDVVKV 301
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.9 bits (67), Expect = 6.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1057 DVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHAL 1103
D I+ P S T G + + L E++++ +H +
Sbjct: 54 VDWNTVDAILLPISGTN-EAGKVDTIFSNESIVLTEEMIEKTPNHCV 99
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 30.2 bits (69), Expect = 6.1
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 197 VDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK--DAIEEN 236
+ V + C+++ V + F G G +A +A ++
Sbjct: 378 IAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDV 419
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 29.9 bits (68), Expect = 6.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
+ G+ +A + V GA I+ DV A
Sbjct: 253 LFGS-IAADVLAVYHGASIIRTHDVKA 278
>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C,
oxidoreductase; HET: NFS; 1.10A {Carboxydothermus
hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A*
1suf_A* 2yiv_X* 3b51_X 3b52_X 3b53_X 3i39_X
Length = 636
Score = 30.4 bits (68), Expect = 6.2
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 822 YEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHD 873
++L + + G P + +G + N+ +H H
Sbjct: 205 AQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPV 264
Query: 874 MAGTGVATT----LACVKAGADIVDVAADSMSGICSQPAMG 910
++ V+ + AGA ++V +G G
Sbjct: 265 LSDIIVSVSKEMENEARAAGATGINVVGICCTGNEVLMRHG 305
>4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti}
PDB: 4fd6_A
Length = 222
Score = 29.3 bits (65), Expect = 6.8
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 9/160 (5%)
Query: 189 GTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK--------DAIEENFKRA 240
T P +++ + A G + N + E
Sbjct: 41 NLTRPGQGHPLLEQHSLSTLKDNVSIMAISNDGDIAGVALNGILYGNTDIEKSREKLNEI 100
Query: 241 QSEALASFGKDDMLVEKYIDRPRHIEV-QILGDKYGDVVHLYERDCSMQRRYQKVIQIAP 299
Q E+ K I+ + +V +I + V + ++ +K ++A
Sbjct: 101 QDESFKKIFKLLYEQNLKINLFKQFDVDKIFEIRILSVDSRFRGKGLAKKLIEKSEELAL 160
Query: 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN 339
+ V DA S R+ SLG+ + + D+N
Sbjct: 161 DRGFQVMKTDATGAFSQRVVSSLGFITKCEINYTDYLDEN 200
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 29.5 bits (67), Expect = 7.0
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 25/82 (30%)
Query: 839 LKDMAGLLK--------PTAAKLL----IGSFREKYPNILIHVHTHDMAGTGVATTLACV 886
+ D+A L + PT + F +YP+I + + +
Sbjct: 21 IHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEM-----SQEKIEDML 75
Query: 887 KAGADIVDVAADSMSGICSQPA 908
+DV GI P
Sbjct: 76 CRDE--LDV------GIAFAPV 89
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 29.5 bits (67), Expect = 7.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
R+KY N+ I V D G + TT GA+I+ VA
Sbjct: 168 RKKYKNLNIQV---D-GGLNIETTEISASHGANII-VA 200
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 29.1 bits (66), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
R+KYP++ I V D G G +T AGA+ + VA
Sbjct: 168 RKKYPSLDIEV---D-GGLGPSTIDVAASAGANCI-VA 200
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 29.8 bits (68), Expect = 8.3
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 826 AKQLVESGAQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880
K LVE+G VL + D + G+L+ I R YP++ I + G VA
Sbjct: 236 VKALVEAGVDVLLI-DSSHGHSEGVLQ------RIRETRAAYPHLEI------IGGN-VA 281
Query: 881 T---TLACVKAGADIVDV 895
T A ++AG V V
Sbjct: 282 TAEGARALIEAGVSAVKV 299
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 29.6 bits (66), Expect = 8.3
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 820 NYYEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHT 871
N +L + + G +P ++ +G N ++H H
Sbjct: 225 NDPVNLVFSAIRVALADYTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHN 284
Query: 872 HDMAGTGVATT----LACVKAGADIVDVAADSMSGIC 904
++ V AGA +++ GIC
Sbjct: 285 PLLSEIIVQAAREMEGEAKAAGAKGINLV-----GIC 316
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family,
cofactor-binding DO cysteine biosynthesis; 2.80A
{Escherichia coli K12} SCOP: c.94.1.1
Length = 228
Score = 29.2 bits (66), Expect = 8.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 854 LIGSFREKYPNILIHVHTHD 873
+I +FRE +P + + +
Sbjct: 32 VIKAFRELFPEVRLELIQGT 51
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 29.1 bits (66), Expect = 8.9
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 213 LKAAFGGGGRGMRM-VANKDAIEENFKRAQSEALASFGKDDMLV 255
L AA G + ++ ++ + + + +FG+ D+LV
Sbjct: 56 LNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLV 99
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis,
transferase, ligase, multifunctional enzyme; HET: PMM;
2.3A {Saccharomyces cerevisiae}
Length = 545
Score = 29.4 bits (66), Expect = 9.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 874 MAGTGVATTLACVKAGADIV---DVAA 897
T A +C+ G+D+V DV
Sbjct: 504 DFAT-GAVVASCIGFGSDMVRVHDVKN 529
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal
transduction, sugar transport; 1.98A {Escherichia coli}
SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F*
1gld_F* 1gle_F* 1o2f_A 2f3g_A
Length = 161
Score = 28.4 bits (64), Expect = 9.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 1370 EVKVKVGQQVKKNDVLIVM 1388
+ + GQ+VK D +I
Sbjct: 97 KRIAEEGQRVKVGDTVIEF 115
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase
activity1, lyase-transferase complex; 2.20A {Vibrio
vulnificus}
Length = 183
Score = 28.8 bits (65), Expect = 10.0
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 1370 EVKVKVGQQVKKNDVLIVMSV---------MKTETLIHASADGVVKEIFVEVGGQVAQND 1420
+ GQ VK D +I + T +I + +KE+ G V
Sbjct: 119 TRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDE--IKELNKLSGSVVVGET 176
Query: 1421 LVVVL 1425
V+ +
Sbjct: 177 PVLRV 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,025,232
Number of extensions: 1405238
Number of successful extensions: 3993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3765
Number of HSP's successfully gapped: 229
Length of query: 1427
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1321
Effective length of database: 3,742,167
Effective search space: 4943402607
Effective search space used: 4943402607
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.2 bits)