RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15244
(1427 letters)
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 216 bits (552), Expect = 5e-64
Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 30/301 (9%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D+ A K + +++ +V FP I++ +F GG G + N+
Sbjct: 1 DRRRFDVAMKKIGLETARSGI--AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD--VVHLYERDCSMQ 288
E F+ + L ++L+++ + + E++++ DK + +V E +M
Sbjct: 59 ----EEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 114
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT-VEFLLD-KDDNFYFIEVN 346
I +APAQ ++ + S+ + + +G G+ V+F ++ K+ IE+N
Sbjct: 115 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 174
Query: 347 PRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRN 406
PR+ L+ + TG + + K+A G +L E IT + +P +
Sbjct: 175 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDE---LMNDITGGRTPA-----SFEPSID 226
Query: 407 FQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRA 466
+ + F +++ S + +++ T + S +K R
Sbjct: 227 YVVTKIPRFNFEKF-----------AGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRG 274
Query: 467 L 467
L
Sbjct: 275 L 275
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 201 bits (511), Expect = 2e-59
Identities = 99/216 (45%), Positives = 154/216 (71%), Gaps = 3/216 (1%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K +++ KA VP++PG+ + +++ K E+ +PV+LKA GGGGRG+R+ N++
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291
+ +N+++A EA +FG+ D+L+EK+I+ P+HIE Q+LGDK+G+V+HL ERDCS+QRR
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRN 120
Query: 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQV 351
QK+++IAP+ ++ R+ + AK +GY NAGT+EF+ D++ N YFIE+N R+QV
Sbjct: 121 QKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 180
Query: 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
EH +SE +TGID+V+ QIKIA G+ LT QE +
Sbjct: 181 EHPVSEMVTGIDIVKWQIKIAAGEPLTIK---QEDV 213
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 190 bits (483), Expect = 2e-55
Identities = 95/218 (43%), Positives = 145/218 (66%), Gaps = 5/218 (2%)
Query: 171 DKVLARDAALKADVPIIPGTTEPV-TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN 229
DKV A A KA VP +PG+ P+ D+DK + + +PVI+KA+ GGGGRGMR+V
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60
Query: 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR 289
+ ++ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQR
Sbjct: 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR 120
Query: 290 RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRL 349
R+QKV++ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+
Sbjct: 121 RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNTRI 179
Query: 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
QVEH ++E ITG+D+++ Q++IA G+ L+ QE++
Sbjct: 180 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIK---QEEV 214
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 185 bits (470), Expect = 9e-53
Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 12/296 (4%)
Query: 652 SVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC 711
V + + + +T+ RDAHQSL+ATR+ D+ + +S+E WGGA +C
Sbjct: 4 EVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGATYDSC 61
Query: 712 LKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771
++FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FR
Sbjct: 62 IRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFR 121
Query: 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831
VFD +N N+ M AV++ + TICY +++ Y LA QL++
Sbjct: 122 VFDAMNDPRNMAHAMAAVKKAGK---HAQGTICYTIS------PVHTVEGYVKLAGQLLD 172
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890
GA + LKDMA LLKP A +I + ++ Y I++H H G + + ++AG
Sbjct: 173 MGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGV 232
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
D+VD A SMS ++ LE T +D + +++ +R Y
Sbjct: 233 DVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKK 288
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 155 bits (392), Expect = 4e-43
Identities = 24/231 (10%), Positives = 72/231 (31%), Gaps = 35/231 (15%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
++ L +A + + K E ++++ VI+K GGRG + ++
Sbjct: 1 ERSLEGKLLREAGLRVP-----------KKYESPEDIDGTVIVKFPGARGGRGYFIASST 49
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPR------------HIEVQILGDKYGDV 277
+ + + + + + +E+Y+ +E+ + +Y
Sbjct: 50 EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN 109
Query: 278 VHLYERDCSMQRRYQKVI-----QIAPAQDMSVSVRDAITETSVRLAK------SLGYSN 326
+ R + + + + S+ + E +L G
Sbjct: 110 IDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIG 169
Query: 327 AGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377
++ L +++ E++ R+ + + ++ G+ +
Sbjct: 170 PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRI 220
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 139 bits (351), Expect = 3e-37
Identities = 52/240 (21%), Positives = 108/240 (45%), Gaps = 13/240 (5%)
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
+ A + + T VT ++ E E+ +P++++A++ GGR M +V + E
Sbjct: 3 QHAVERLKLKQPANAT--VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EA 56
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV- 294
+ +R A++ +L++ ++D ++V + D G++V + +++
Sbjct: 57 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSG 114
Query: 295 --IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352
PA +S ++D + + +LA L V+F + K++ Y IEVNPR
Sbjct: 115 DSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAART 173
Query: 353 HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG 412
+ TG+ + + ++ GKSL E G+ +E I P +++ + + P G
Sbjct: 174 VPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVI-PPYYSVKEVVLPFNKFPGVDPLLG 232
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 138 bits (347), Expect = 7e-37
Identities = 86/270 (31%), Positives = 133/270 (49%), Gaps = 33/270 (12%)
Query: 170 GDKVLARDAALKADVPIIPGTTEP------------------------VTDVDKVKEFCD 205
GDK+ + A A VP IP + T + +
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 206 EVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+ FPV++KA+ GGGG+G+R V EE+F +A + + K R RH+
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMKLAGRARHL 116
Query: 266 EVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS 325
EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VRL K +GY
Sbjct: 117 EVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYV 176
Query: 326 NAGTVEFLLDKDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL---G 381
+AGTVE+L DD FYF+E+NPRLQVEH +E ++G+++ +Q++IA G + +
Sbjct: 177 SAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIR 236
Query: 382 LCQEKITPQGCAIQCHLRTEDPKRN-FQPS 410
I +T+D + +P
Sbjct: 237 TLYGMNPHSASEIDFEFKTQDATKKQRRPI 266
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Aquifex aeolicus [TaxId: 63363]}
Length = 114
Score = 125 bits (316), Expect = 2e-34
Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ K+L+ANR E+A+R+ RAC E+GI +V IY+E + + H D+A+++G P+ Y
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGT--DPLDTY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGD 171
LN II +A DAIHPGYGFL+E +FAK AG+ FIGP V++ +GD
Sbjct: 60 LNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 128 bits (322), Expect = 9e-34
Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 32/231 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D+ L R KA + + +V E D++E PVI+K GG+G + +
Sbjct: 1 DRNLERKWLKKAGIRVP-----------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49
Query: 231 DAIEENFKRAQSEALASFGKD---------DMLVEKYIDRPRHIEVQILGDKYG---DVV 278
+ ++ K+ + Y E++++ +V
Sbjct: 50 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVD 109
Query: 279 HLYERDCSMQRRYQKVIQ----IAPAQDMSVSVRDAITETSVRLAKSL-----GYSNAGT 329
+ Q + I + S+ + E R+ K+ G
Sbjct: 110 AIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFC 169
Query: 330 VEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
+E + D F E++ R+ + + ++ ++ G+ +
Sbjct: 170 LEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAME 220
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 118 bits (297), Expect = 7e-32
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG 170
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +G
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 170
Score = 117 bits (295), Expect = 8e-31
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 43 VRRCGCKPPPPPKTMEKILIANRSEVAIRVARACNEMGIK-----------SVGIYSEQD 91
V+ G + KILIAN A++ R+ + + ++ + +
Sbjct: 37 VKSHGGHTV-----ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLE 91
Query: 92 KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAV 151
+ + DQ V G Y N+ I+ IA+ +VDA+ G+G SE + +
Sbjct: 92 ANAEYIRMADQYIEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKL 150
Query: 152 IGA--GLEFIGPAPNVLKTL 169
+ + FIGP N +++L
Sbjct: 151 SQSKRKVIFIGPPGNAMRSL 170
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 111 bits (279), Expect = 1e-28
Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 16/202 (7%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K A KA +P T TD ++ + +PV+LK G GR +
Sbjct: 1 KWATSVALAKAGLPQPK--TALATDREEALRLMEAFGYPVVLKPVIGSWGRLL--AXXXX 56
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPR-HIEVQILGDKYGDVVHLYERDCSMQRR 290
E L F +++Y+++P I V ++G++ ++
Sbjct: 57 XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTA 116
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350
+ P + A V+ + EVN ++
Sbjct: 117 RGGQAENCPLTEE--------VARLSVKAAEAVGGGVVAVDLFES-ERGLLVNEVNHTME 167
Query: 351 VEHTLSEEITGIDVVQSQIKIA 372
+++ TG+D+ +K A
Sbjct: 168 FKNS--VHTTGVDIPGEILKYA 187
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 123
Score = 100 bits (249), Expect = 2e-25
Identities = 45/120 (37%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G AI+C + EDPK+NF PST ++ + P GIRV+ G +++P YDS++AK+I
Sbjct: 3 GYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEH-AAARGFEVTPYYDSMIAKLI 61
Query: 451 VHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T+ + E+MR ALE +++GV T +P L+N+ +K F +G+ T +++++P++ E
Sbjct: 62 TWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGK-FTTKYLEEHPEVFE 120
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 101 bits (252), Expect = 7e-25
Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 22/212 (10%)
Query: 168 TLGDKVLARDAALKA----DVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRG 223
DK + P T +E FPV++K G G
Sbjct: 8 NFCDKPWVFAQMVAIFKTLGGEKFPLI--EQTYYPNHREMLTLPTFPVVVKIGHAHSGMG 65
Query: 224 MRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER 283
V N ++ + E +ID I VQ + +
Sbjct: 66 KVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKI---GNNYKAYMRT 116
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
S + + MS D ++ G + V+ + KD Y
Sbjct: 117 SISGNWKTNTGSAMLEQIAMS----DRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIF 172
Query: 344 EVN---PRLQVEHTLSEEITGIDVVQSQIKIA 372
EV L EH + + D+V S++
Sbjct: 173 EVMDCSMPLIGEHQVEDRQLITDLVISKMNQL 204
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain
{Escherichia coli [TaxId: 562]}
Length = 116
Score = 93.9 bits (233), Expect = 3e-23
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G A++C + EDP F PS G++ F P G+R +S Y G + P YDS++ K+I
Sbjct: 2 GHAVECRINAEDPN-TFLPSPGKITRFHAPGGFGVRWES-HIYAGYTVPPYYDSMIGKLI 59
Query: 451 VHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQL 508
+ + +M+ AL+E + G+ TN+ + + +D+ F G ++++ L
Sbjct: 60 CYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGG-TNIHYLEKKLGL 116
>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 168
Score = 93.8 bits (233), Expect = 1e-22
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 29/183 (15%)
Query: 995 IPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
IPGG +N++ + + G + ++V G TPSS++V A+F
Sbjct: 1 IPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVM-- 58
Query: 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHAL-ERKAEFDP 1111
+ + G G K+ + + + +R A+ P
Sbjct: 59 --------MGEYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLP 110
Query: 1112 IMACDYREDEPFK----------MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALER 1161
++ + +FP+ F + R E GP T +
Sbjct: 111 PEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAE-GPHSVALT-----DAQL 164
Query: 1162 KAE 1164
KAE
Sbjct: 165 KAE 167
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 116
Score = 88.2 bits (218), Expect = 4e-21
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G C + +EDP F+PS G L +S + I DS I
Sbjct: 2 GHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGY-FSVGNNGNIHSFSDSQFGHIF 60
Query: 451 VHTATYKSSCEKMRRALEETQVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
++S + M AL+E + G T + +L+ + + + F + T ++DD
Sbjct: 61 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNT-ITTGWLDD 114
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 87.8 bits (216), Expect = 5e-20
Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
R AA + +P +E ++ +P I+K G+G + + + + +
Sbjct: 7 RLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+K ++ G ++VE + I + + G Y++
Sbjct: 65 AWKY--AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESW 122
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
Q +++ I V G L D F EV+PR +
Sbjct: 123 QPQQMSPLALERAQEIARKVVLALGGYGLFG----VELFVCGDEVIFSEVSPRPHDTGMV 178
Query: 356 SEEITGIDVVQSQIKIAQGKSLTEL 380
+ + ++ G + +
Sbjct: 179 TLISQDLSEFALHVRAFLGLPVGGI 203
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 88.9 bits (219), Expect = 1e-19
Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 30/291 (10%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA---VSHTCLK 713
K + ++D T RD ++ + D++ ++ + + S+E+ G S
Sbjct: 6 KKLYISDVTLRDGSHAI-RHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNYG 62
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
F + E + + I + +L + A QAG + RV
Sbjct: 63 FGRHTDLEYIEAVAGEISHAQIATLL----------LPGIGSVHDLKNAYQAGARVVRVA 112
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
+ ++ + + + + + K + G
Sbjct: 113 THCTEADVSKQHIEYARNLG---MDTVGFLMMSHM--------IPAEKLAEQGKLMESYG 161
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTGVATTLACVKAGADI 892
A + + D G + + + +F+ + +H H GVA ++ V+ G D
Sbjct: 162 ATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDR 221
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943
VD + M + ++ E G DL+ + D + VR L
Sbjct: 222 VDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDLYTLMDAAD--DIVRPL 270
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 78.8 bits (194), Expect = 2e-18
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ A GEI AP+ G + ++ VK G VK ++V+ MK ET I+A DG V+++
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 1410 VEVGGQVAQNDLVVVL 1425
V+ V ++ +
Sbjct: 61 VKERDAVQGGQGLIKI 76
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 82.1 bits (201), Expect = 4e-18
Identities = 24/209 (11%), Positives = 57/209 (27%), Gaps = 14/209 (6%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D++ + K +P P + + + D + I+K GG +
Sbjct: 1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
+ ++E L + + +VE+ I+ + + G V Q
Sbjct: 59 N---------ETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDG 109
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350
+ P + R +++ E+ PR+
Sbjct: 110 ILRTSVAFPQANAQQQARAEEMLSAIMQE---LGYVGVMAMECFVTPQGLLINELAPRVH 166
Query: 351 VEHTLSEEITGIDVVQSQIKIAQGKSLTE 379
++ I + ++ L +
Sbjct: 167 NSGHWTQNGASISQFELHLRAITDLPLPQ 195
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 79.0 bits (193), Expect = 6e-17
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 22/216 (10%)
Query: 172 KVLARDAALKADVPIIPGTT-----EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM 226
K+ ++ A +P+ P DK + PVI+K + G GM
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS 286
V ++A+++ + A D+ ++ + V ILG++ + +
Sbjct: 61 VVAENALQDALRLAFQ-------HDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTF 113
Query: 287 MQRRYQKVIQIAPAQDMSVSVRDAITET---SVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
+ + + ++ +LG G ++ +LD D FY +
Sbjct: 114 YDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL 173
Query: 344 EVNPRLQVEHT----LSEEITGI---DVVQSQIKIA 372
E N + ++ G+ +V +++A
Sbjct: 174 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 209
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 74.3 bits (181), Expect = 3e-15
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 20/192 (10%)
Query: 171 DKVLARDAALKADVPIIPGT--TEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK L ++ + + + E+ V +KAA G G+ V
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
N + E + +L+E+ ++ R +EV ++G+ V + Q
Sbjct: 61 NAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114
Query: 289 RRYQKV------------IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336
+ +S V + + ++ K L ++FLLD+
Sbjct: 115 GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE 174
Query: 337 DDNFYFIEVNPR 348
++ Y E N
Sbjct: 175 NNVPYLGEPNTL 186
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 72.3 bits (176), Expect = 5e-14
Identities = 34/295 (11%), Positives = 78/295 (26%), Gaps = 16/295 (5%)
Query: 663 DTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHT----CLKFLK 716
RD +Q+L+ + ++ + + + +E+ + S T + ++
Sbjct: 16 AVDLRDGNQALIDP-MSPARKRR----MFDLLVRMGYKEIEVGFPSASQTDFDFVREIIE 70
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
+ ++ L P + + G + L + R
Sbjct: 71 QGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQA 130
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
+ K ++ + G E + + + +
Sbjct: 131 IATDGARKCVEQAAKYPGTQWRFEYSPESYTG--TELEYAKQVCDAVGEVIAPTPERPII 188
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACVKAGADIV 893
L + P I N ++ +H H+ GT VA AGAD +
Sbjct: 189 FNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 248
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAH 948
+ + T+ L + ID ++ + +L
Sbjct: 249 EGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHER 303
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 68.0 bits (165), Expect = 4e-13
Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K +D + +P + T+V+ + E P+++KA G+G+ + +
Sbjct: 2 KAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 59
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK-------YGDVVHLYERD 284
E + +++E+++D + ++ + D + ++D
Sbjct: 60 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119
Query: 285 CSMQRRYQKVIQIAPAQDMSVSVR--DAITETSVRLAKSLGYSNAGTV--EFLLDKDDNF 340
AP V R + I +V+ + G + G + ++DK N
Sbjct: 120 TGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNP 179
Query: 341 YFIEVNPRL-QVEHTLSEEITGIDVVQSQIKIAQGK 375
IE N R +E D+V+ + + K
Sbjct: 180 KVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESK 215
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 62.5 bits (152), Expect = 1e-12
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I++ VK G +V ++DVL + K I + G V EI V G ++ L
Sbjct: 16 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75
Query: 1426 DV 1427
D
Sbjct: 76 DA 77
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 62.1 bits (151), Expect = 2e-12
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ E VK G V + D + + K I + DGV+K+++ + +V +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
Query: 1426 DV 1427
+
Sbjct: 79 ET 80
Score = 32.1 bits (73), Expect = 0.066
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
I + G I ++ + L+ +
Sbjct: 49 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 61.1 bits (148), Expect = 4e-12
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1359 EIGAPMPGNI-------IEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
+ +PM G + ++VGQ+V D L ++ MK I A G VK I VE
Sbjct: 6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65
Query: 1412 VGGQVAQNDLVVVLD 1426
G V ++ +VV++
Sbjct: 66 SGQPVEFDEPLVVIE 80
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 61.0 bits (148), Expect = 4e-12
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1359 EIGAPMPGN----IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414
E+ P G + EV VKVG +V LI + K + A GVVKE+ V VG
Sbjct: 4 EVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD 63
Query: 1415 QVAQNDLVVVLDV 1427
+V L+++ +V
Sbjct: 64 KVKTGSLIMIFEV 76
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 63.9 bits (154), Expect = 9e-12
Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 19/222 (8%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN-K 230
KV A+ K + ++++E + P ++KA G+G+ ++ + +
Sbjct: 2 KVYAKRFMKKYGIRTARFEV--AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKE 59
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY------GDVVHLYERD 284
+ IE+ K E + ++ E + G + D L + D
Sbjct: 60 ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGD 119
Query: 285 CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFI 343
++ + + + ++ + GY+ G + L D + Y +
Sbjct: 120 RGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYIL 179
Query: 344 EVNPRL-----QVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
E N RL +V TL+ E V + ++ +G + +
Sbjct: 180 EYNVRLGDPETEVIVTLNPE----GFVNAVLEGYRGGKMEPV 217
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 59.8 bits (145), Expect = 1e-11
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQN 1419
IG +II V+V VG + +D LI + K + A GVVKE+ V+VG ++++
Sbjct: 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEG 69
Query: 1420 DLVVVLDV 1427
L+VV++
Sbjct: 70 GLIVVVEA 77
Score = 28.2 bits (63), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
++ A + G + EVKVKVG ++ + +++V+
Sbjct: 46 DVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 58.7 bits (142), Expect = 3e-11
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVV 1423
G +IE+ VK G ++ L+V+ K + + GVVK + V++G ++ + D ++
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAII 70
Query: 1424 VLDV 1427
L+
Sbjct: 71 ELEP 74
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 57.1 bits (138), Expect = 9e-11
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ K G V +++VL+ + K + ASADG++ + + G V ++ L
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76
Query: 1426 D 1426
Sbjct: 77 R 77
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 54.4 bits (131), Expect = 7e-10
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G + K G+ VK++++++ + K + A ADGV+ EI G V +L+ L
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75
Query: 1426 D 1426
Sbjct: 76 T 76
Score = 29.4 bits (66), Expect = 0.56
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389
E+ A G I E+ G V ++L ++
Sbjct: 46 EVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 54.8 bits (130), Expect = 1e-08
Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 8/182 (4%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + + D+ +PV +K A G G++ V +
Sbjct: 1 DKSLTYIVAKNAGIATPAFWV--INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSA 56
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
D ++ + A+ + + + ++ + + Y Q
Sbjct: 57 DELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEV 116
Query: 291 YQKVI----QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVN 346
+ I D+S R I ET ++ K+LG V+ L + EVN
Sbjct: 117 EPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVN 176
Query: 347 PR 348
Sbjct: 177 TL 178
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.8 bits (111), Expect = 6e-07
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVV 1424
G + + KVG+++ + D+L + K +G + +I V G + V + +
Sbjct: 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 79
Query: 1425 LD 1426
+
Sbjct: 80 IV 81
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 37.4 bits (85), Expect = 0.008
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388
E+ + G I++ K G VK L +
Sbjct: 17 EVRPQVNGIILKRLFKEGSDVKAGQQLYQI 46
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 34.0 bits (78), Expect = 0.13
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 822 YEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHD 873
++L + + G P + +G + N+ +H H
Sbjct: 202 AQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPV 261
Query: 874 MAGTGVATT----LACVKAGADIVDVAADSMSGICSQPAMG 910
++ V+ + AGA ++V +G G
Sbjct: 262 LSDIIVSVSKEMENEARAAGATGINVVGICCTGNEVLMRHG 302
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 32.0 bits (73), Expect = 0.19
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSV-------MKTETLIHASADGVVKEIFVEVGGQV 1416
+ GN E V Q+V D L+ + + ++ I + K + + G+V
Sbjct: 86 LDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPI-IFTNNGGKTLEIVKMGEV 144
Query: 1417 AQNDLVVVL 1425
Q D+V +L
Sbjct: 145 KQGDVVAIL 153
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 32.9 bits (75), Expect = 0.29
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 822 YEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHD 873
+L + + G +P ++ +G N ++H H
Sbjct: 226 PVNLVFSAIRVALADYTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPL 285
Query: 874 MAGTGVATT----LACVKAGADIVDVAADSMSGICSQPAMG 910
++ V AGA +++ +G G
Sbjct: 286 LSEIIVQAAREMEGEAKAAGAKGINLVGICCTGNEVLMRQG 326
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 32.5 bits (74), Expect = 0.47
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 13/102 (12%)
Query: 822 YEDLAKQLVESG---AQVLCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHD 873
+L + L G +P + +G + NI ++ H
Sbjct: 182 PTNLILGGLRVAMADLDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPM 241
Query: 874 MAGTGVATTL-----ACVKAGADIVDVAADSMSGICSQPAMG 910
++ A A+ +++ +G G
Sbjct: 242 LSDIICDVAADLRDEAIAAGAAEGINIIGICCTGHEVMMRHG 283
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 30.1 bits (68), Expect = 0.86
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1364 MPGNIIEVKVKVGQQVKKNDVLIVM 1388
+ G + + GQ+VK D +I
Sbjct: 80 LKGEGFKRIAEEGQRVKVGDTVIEF 104
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 31.2 bits (70), Expect = 1.1
Identities = 17/108 (15%), Positives = 26/108 (24%), Gaps = 6/108 (5%)
Query: 744 LVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATI 803
LV R+ Q + + DP + G + +GG+T E
Sbjct: 222 LVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRM--YSGGTTQQEMKE 279
Query: 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851
T K + E Q + L T
Sbjct: 280 APDAIDT----LLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDE 323
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Length = 237
Score = 30.7 bits (68), Expect = 1.2
Identities = 10/101 (9%), Positives = 22/101 (21%), Gaps = 1/101 (0%)
Query: 854 LIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIV 913
+I F E+YP + +H+H A + +
Sbjct: 24 VIKGFIERYPRVSLHMHQGSPTQI-AEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRS 82
Query: 914 SCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
+ + + + Y + L
Sbjct: 83 IVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTA 123
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus
subtilis [TaxId: 1423]}
Length = 158
Score = 29.4 bits (66), Expect = 2.0
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 1364 MPGNIIEVKVKVGQQVKKNDVLIVM 1388
+ G V G +V+ L+ +
Sbjct: 88 LKGEGFTSFVSEGDRVEPGQKLLEV 112
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR
{Burkholderia sp. [TaxId: 36773]}
Length = 219
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/115 (9%), Positives = 27/115 (23%), Gaps = 1/115 (0%)
Query: 854 LIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIV 913
L+ + ++ P+I I + V ++ +
Sbjct: 30 LMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCM 89
Query: 914 SCLENTDKRCGIDLHDVCDYSSYWRKVR-ELYAPAHNLLWRCGIDLHDVCDYSSY 967
++ + + L + + LL R GI +
Sbjct: 90 FRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHF 144
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
{Escherichia coli [TaxId: 562]}
Length = 262
Score = 29.3 bits (65), Expect = 3.3
Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 23/198 (11%)
Query: 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN------ 811
F +L + G+++ V D S+ V+G D+ VT G
Sbjct: 27 FAKLFADEGLNVMLVGD---SLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADL 83
Query: 812 PNKKKYSLNYYEDLAKQLVESGAQVLC----------LKDMAGLLKPTAAKL-LIGSFRE 860
P + + A ++ +GA ++ ++ + P L L
Sbjct: 84 PFMAYATPEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVN 143
Query: 861 KYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV-AADSMSGICSQPAMGTIVSCLENT 919
+ + + ++ LA AGA ++ + A+ V +
Sbjct: 144 IFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAG 203
Query: 920 DKRCGIDL--HDVCDYSS 935
+ G L HD +
Sbjct: 204 NVTDGQILVMHDAFGITG 221
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 27.8 bits (62), Expect = 3.7
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 1357 AGEIGAPM-PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI 1408
AG G P+ G E+ V VGQ++++ + +H +
Sbjct: 33 AGRAGEPLRLGVGAELLVDVGQRLRRGTPWLR---------VHRDGPALSGPQ 76
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur
protein methyltransferase MetR {Moorella thermoacetica
[TaxId: 1525]}
Length = 262
Score = 28.9 bits (64), Expect = 3.9
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 807 GDLTNPNKKKYS-------LNYYEDLAKQLVESGAQVL 837
G+ N ++ A++ E GA+ L
Sbjct: 5 GERINGMFGDIKRAIQERDPAPVQEWARRQEEGGARAL 42
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl
{Escherichia coli [TaxId: 562]}
Length = 220
Score = 28.6 bits (62), Expect = 4.7
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 17/164 (10%)
Query: 841 DMAGLLK----PTAAKLL----IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
D +G+L T A+ I +FRE +P + + + +AT L +A I
Sbjct: 3 DTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQ--EIATLLQNGEADIGI 60
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
+ + + P S L D S + +
Sbjct: 61 ASERLSNDPQLVAFPWFRWHHSLLVPHDHPL-------TQISPLTLESIAKWPLITYRQG 113
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIP 996
G D L A + + +
Sbjct: 114 ITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVA 157
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 330
Score = 28.9 bits (65), Expect = 4.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 490 KFLSGEALETN---FIDDNPQLLERNSYQTCRDMKILRFIGETLVN 532
K LS E LE + F + +LL +Y T R L+ +GE L++
Sbjct: 187 KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS--LKLLGELLLD 230
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 28.7 bits (63), Expect = 5.1
Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 1/93 (1%)
Query: 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935
G G+ + + V A ++ + +Q + L DV D S
Sbjct: 13 GIGLHLAVRLASDPSQSFKVYA-TLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKS 71
Query: 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYW 968
+ ++L +
Sbjct: 72 VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE 104
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 28.5 bits (63), Expect = 5.7
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 7/119 (5%)
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
E+ E P + + G L P + L + ++I
Sbjct: 27 YNRSYR-PFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGF 85
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
V + D + Q+ A + + +L K L E+G
Sbjct: 86 Y-EPVLAAIPKEDRLVQIEMLKDYARKLGYDAKGVWLTE-----RVWQPELVKSLREAG 138
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli
[TaxId: 562]}
Length = 112
Score = 27.1 bits (60), Expect = 7.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCAD----FVSDMNERSKIRTD 578
P + + V VD +D + +T FV D+ +IRT
Sbjct: 57 PKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTG 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,307,217
Number of extensions: 260288
Number of successful extensions: 889
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 63
Length of query: 1427
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1330
Effective length of database: 1,075,786
Effective search space: 1430795380
Effective search space used: 1430795380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.4 bits)