BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15246
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 48/56 (85%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
V Y+TFDIL+D+EVR+GLK YSNWPTYPQ+YV EL+GGLDI+KEL+ +L+P L
Sbjct: 47 VEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPIL 102
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 2/65 (3%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL--DQ 205
V Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV +L+GGLDI+KEL+ +L+P L +
Sbjct: 45 VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGES 104
Query: 206 PPSSD 210
PSS
Sbjct: 105 GPSSG 109
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
+ + +FDI D+EVR+GLK YS+WPTYPQ+YV+ ELIGGLDIIKEL+ + +L
Sbjct: 46 IQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEEL 97
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
VVHF+A W+ +C MN + E++K+ QV F + AE +P++S Y++S+VPTF+ K
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 82 NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYD 121
N + +DR++GA L KK+Q AS+ PS V D
Sbjct: 94 NSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTD 133
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
VVHF+A W+ +C MN + E++K+ QV F + AE +P++S Y++S+VPTF+ K
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 82 NLKPVDRVEGADPESLDKKLQNQAST 107
N + +DR++GA L KK+Q AS+
Sbjct: 100 NSQKIDRLDGAHAPELTKKVQRHASS 125
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
+ +++L+D E+REG+K +S WPT PQ+YVN E IGG D+I + + +L L++
Sbjct: 51 FAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
Y +++L D E+R+G+K YSNWPT PQVY+N E +GG DI+ ++ L+ L
Sbjct: 53 YAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
G DK V+ F+A W CK + +F+++S +V F + ++ +++ + A+P
Sbjct: 31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
TFV KN + +D V GADP L + ++
Sbjct: 91 TFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192
VP++ +IL+++ +R+GLK YSNWPT+PQ+Y+ E GG DI E
Sbjct: 48 VPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLE 92
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 117 HVPYDTFDILQDQEVREGLKIYSNWPTYPQV 147
+VP++ +IL+++ +R+GLK YSNWPT+PQ+
Sbjct: 47 NVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
P+++ +IL+++ +R+GLK YS+WPT+PQ+Y++ E GG DI E + +L
Sbjct: 48 APFESVNILENELLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGEL 99
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
G K VV F A W CK + +F E++K K+ V F + ++L ++ + V A+P
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAK--KFPNVTFLKVDVDELKAVAEEWNVEAMP 81
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
TF+ LK+ K VD+ GAD + L + A+
Sbjct: 82 TFIFLKDGKLVDKTVGADKDGLPTLVAKHATA 113
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
+DK VV FYA W CK + + ++ S+Q Y Q F + ++L ++ +VSA+P
Sbjct: 16 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 73
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
T ++ KN K V +V GA+P ++ + + A
Sbjct: 74 TLLLFKNGKEVAKVVGANPAAIKQAIAANA 103
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
+DK VV FYA W CK + + ++ S+Q Y Q F + ++L ++ +VSA+P
Sbjct: 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
T ++ KN K V +V GA+P ++ + + A
Sbjct: 80 TLLLFKNGKEVAKVVGANPAAIKQAIAANA 109
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
V+ FYA W CK M ++ + Y V F +C ++ P ++ +V+A+PTFV+ K
Sbjct: 34 VIDFYATWCGPCKMMQPHLTKLIQA--YPDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91
Query: 82 NLKPVDRVEGADPESLDKKLQN 103
+ + + ++ GA+P +L+K +++
Sbjct: 92 DGQLIGKIIGANPTALEKGIKD 113
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
MSV+++++E + E DK +V F+A W C+ + + +E++K+ + V +
Sbjct: 1 MSVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD 60
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
E+ P + Y + ++PT ++ KN + VDR+ GA P E +DK L
Sbjct: 61 EN-PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 154 DILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
DILQ+ ++R L Y+NWPT+PQ++V+ EL+GG DI+ E+
Sbjct: 51 DILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
+ DILQ+ ++R L Y+NWPT+PQ++V+ EL+GG DI+ E+
Sbjct: 67 FAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 110
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
E G+ +V F+A+W C+ + + +E++K+ + +++ A+ ++ PK + Y+V
Sbjct: 14 ETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE-GKLLVAKLDVDENPKTAXRYRVX 72
Query: 73 AVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSN 114
++PT ++ K+ +PV+ + GA P K QA K+ P+
Sbjct: 73 SIPTVILFKDGQPVEVLVGAQP-----KRNYQAKIEKHLPAT 109
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
E G+ +V F+A+W C+ + + +E++K+ + +++ A+ ++ PK + Y+V
Sbjct: 13 ETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE-GKLLVAKLDVDENPKTAXRYRVX 71
Query: 73 AVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSN 114
++PT ++ K+ +PV+ + GA P K QA K+ P+
Sbjct: 72 SIPTVILFKDGQPVEVLVGAQP-----KRNYQAKIEKHLPAT 108
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
DK V++F+ W++ CK + +F+ +S + S V F A++ ++S +++SAVP
Sbjct: 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 76 TFVILKNLKPVDRVEGADPE 95
F+I+ + + GADP+
Sbjct: 79 YFIIIHKGTILKELSGADPK 98
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
+ AVV F+A+W C + + +E+++ Y QV F + +++ P ++ Y V ++PT +
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAED--YPQVGFGKLNSDENPDIAARYGVMSLPTVI 74
Query: 79 ILKNLKPVDRVEGADP-ESLDKKLQN 103
K+ +PVD + GA P E ++ +++N
Sbjct: 75 FFKDGEPVDEIIGAVPREEIEIRIKN 100
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
K+K VV F+A W CK + LF E+S+ KY +F + + L + + Y +SA+PT
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KY-DAIFVKVDVDKLEETARKYNISAMPT 88
Query: 77 FVILKNLKPVDRVEGA 92
F+ +KN + V V GA
Sbjct: 89 FIAIKNGEKVGDVVGA 104
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
+ E D DK VV F+A W CK + + ++ ++Q YS F + +++ ++
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 72
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
+VS++PT + K K V RV GA+P ++ + + +
Sbjct: 73 QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 109
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
+ E D DK VV F+A W CK + + ++ ++Q YS F + +++ ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 65
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
+VS++PT + K K V RV GA+P ++ + + +
Sbjct: 66 QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 102
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
K+K VV F+A W CK + LF E+S+ KY +F + + L + + Y +SA+PT
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KY-DAIFVKVDVDKLEETARKYNISAMPT 79
Query: 77 FVILKNLKPVDRVEGA 92
F+ +KN + V V GA
Sbjct: 80 FIAIKNGEKVGDVVGA 95
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
+DK VV FYA W K + + ++ S+Q Y Q F + ++L ++ +VSA+P
Sbjct: 22 AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
T ++ KN K V +V GA+P ++ + + A
Sbjct: 80 TLLLFKNGKEVAKVVGANPAAIKQAIAANA 109
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
K+K VV F+A+W C + + +E++ + Y QV F + E+ +++ Y + ++PT
Sbjct: 22 KNKIVVVDFWAEWCAPCLILAPVIEELA--NDYPQVAFGKLNTEESQDIAMRYGIMSLPT 79
Query: 77 FVILKNLKPVDRVEGADP-ESLDKKLQN 103
+ KN + VD++ GA P E ++ +L++
Sbjct: 80 IMFFKNGELVDQILGAVPREEIEVRLKS 107
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K V+ F A W C+ M +F +++K K+ VF + ++L ++ + V A+PTF+
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAK--KFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92
Query: 79 ILKNLKPVDRVEGADPESLDKKLQNQAST 107
+K DRV GA E L K+ A+
Sbjct: 93 FMKEGDVKDRVVGAIKEELTAKVGLHAAA 121
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
+++ +V F+A+W CK + ++E SK Y+++VF + +++ +++ ++++P
Sbjct: 24 SQNELVIVDFFAEWCGPCKRIAPFYEECSKT--YTKMVFIKVDVDEVSEVTEKENITSMP 81
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
TF + KN VD + GA+ +L + ++ A+
Sbjct: 82 TFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 6 ISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
++ D+EK K + VV F+A W C+++ + ++K+ +V FA+ +
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKE--IPEVEFAKVDVDQN 61
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97
+ + Y V+A+PTFV +K+ K VDR GA+ L
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKL 96
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
KY DK A+V FYADW CK + + DE++K+ Q+V + E +L+ + + +
Sbjct: 34 KYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD-GQIVIYKVDTEKEQELAGAFGIRS 92
Query: 74 VPTFVILKNLKPVDRVEGADPESLDKK 100
+P+ + + + +GA P++ KK
Sbjct: 93 IPSILFIPMEGKPEMAQGAMPKASFKK 119
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V A PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
+ E D DK VV F+A W K + + ++ ++Q YS F + +++ ++
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 73
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
+VS++PT + K K V RV GA+P ++ + + +
Sbjct: 74 QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 110
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
VV F+A W CK + ++M + ++ +VV A+ +D L++ Y+VSAVPT + +K
Sbjct: 35 VVDFHAQWCGPCKILGPRLEKMVAK-QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 82 NLKPVDRVEGADPE 95
N VD+ G E
Sbjct: 94 NGDVVDKFVGIKDE 107
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
+ E D DK VV F+A W K + + ++ ++Q YS F + +++ ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 65
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
+VS++PT + K K V RV GA+P ++ + + +
Sbjct: 66 QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 102
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V Q+ ++ D K +K V+ FYA W CK + +E+S+ S VVF +
Sbjct: 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQS--MSDVVFLKVDV 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97
++ ++ + +++ +PTF+ +KN + +D + GA+ + L
Sbjct: 60 DECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 12 VEKYGKDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
++K + KT VV F A W C+ + F +++K K V+F + ++L ++ ++
Sbjct: 31 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK--KLPNVLFLKVDTDELKSVASDWA 88
Query: 71 VSAVPTFVILKNLKPVDRVEGADPESL 97
+ A+PTF+ LK K +D+V GA + L
Sbjct: 89 IQAMPTFMFLKEGKILDKVVGAKKDEL 115
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 16 GKD--KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
GKD K ++ F A W C+ + +F E +K K+ +F + ++L ++ Y V A
Sbjct: 24 GKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK--KFPGAIFLKVDVDELKDVAEAYNVEA 81
Query: 74 VPTFVILKNLKPVDRVEGADPESLDKK---LQNQAST 107
+PTF+ +K+ + VD V G + + K L AST
Sbjct: 82 MPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAST 118
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K ++ F A W C+ + +F E +K K+ VF + ++L +++ Y V A+PTF+
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYAK--KFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94
Query: 79 ILKNLKPVDRVEGADPESL 97
+K+ D+V GA + L
Sbjct: 95 FIKDGAEADKVVGARKDDL 113
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M++V++++ D + + +V F+A W CK + + +E++ + + + E
Sbjct: 4 MAIVKVTDA-DFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
+ P + Y+V ++PT ++ K+ +PVD+V G P E LDK L
Sbjct: 63 N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCTPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVNDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M++V++++ D + + +V F+A W CK + + +E++ + + + E
Sbjct: 4 MAIVKVTDA-DFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
+ P + Y+V ++PT ++ K+ +PVD+V G P E LDK L
Sbjct: 63 N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+K +V F+A W CK + + +E++ + + + + A+ + P+ + N++V ++PT
Sbjct: 30 NKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 78 VILKNLKPVDRVEGA 92
++ K+ +PV R+ GA
Sbjct: 89 ILFKDGQPVKRIVGA 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+K +V F+A W CK + + +E++ + + + + A+ + P+ + N++V ++PT
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 83
Query: 78 VILKNLKPVDRVEGA 92
++ K+ +PV R+ GA
Sbjct: 84 ILFKDGQPVKRIVGA 98
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K V+ F+A W CK ++ E+S Q VV + ++ +++ Y +S++PTFV
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDECEDIAMEYNISSMPTFV 79
Query: 79 ILKNLKPVDRVEGADPESLD 98
LKN V+ GA+ + L+
Sbjct: 80 FLKNGVKVEEFAGANAKRLE 99
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK +V F+A W C+ M + +E + ++ +V A+ ++ P+ + + + ++PT
Sbjct: 17 DKPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78 VILKNLKPVDRVEGADP-ESLDKKLQN 103
++ K +PV ++ G P E L+ +L +
Sbjct: 76 ILFKGGRPVKQLIGYQPKEQLEAQLAD 102
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K V+ F A W + M +F +++K K+ VF + ++L ++ + V A+PTF+
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVFADLAK--KFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 95
Query: 79 ILKNLKPVDRVEGADPESLDKKLQNQAST 107
+K DRV GA E L K+ A+
Sbjct: 96 FMKEGDVKDRVVGAIKEELTAKVGLHAAA 124
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K + +F A W CK + + E+S+ Y ++F ++L S ++++ A PTF
Sbjct: 47 KIVLANFSARWCGPCKQIAPYYIELSEN--YPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 79 ILKNLKPVDRVEGADPESLDKKL 101
L++ + VD++ GA+ L KK+
Sbjct: 105 FLRDGQQVDKLVGANKPELHKKI 127
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K V+ F+A W CK ++ E+S Q VV + ++ +++ Y +S++PTFV
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDECEDIAMEYNISSMPTFV 84
Query: 79 ILKNLKPVDRVEGADPESLD 98
LKN V+ GA+ + L+
Sbjct: 85 FLKNGVKVEEFAGANAKRLE 104
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK +V F+A W C+ M + +E + ++ +V A+ ++ P+ + + + ++PT
Sbjct: 17 DKPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78 VILKNLKPVDRVEGADP-ESLDKKLQN 103
++ K +PV ++ G P E L+ +L +
Sbjct: 76 ILFKGGEPVKQLIGYQPKEQLEAQLAD 102
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W CK + + +E++ + + + E+ P + Y+V ++PT ++ K
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDEN-PSTAAKYEVMSIPTLIVFK 81
Query: 82 NLKPVDRVEGADP-----ESLDKKL 101
+ +PVD+V G P E LDK L
Sbjct: 82 DGQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
KY DK A+V FYADW CK + + +E+SK+ ++ + + P+L+ ++ +
Sbjct: 47 KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKEPELARDFGIQG 105
Query: 74 VPT--FVILKN 82
+PT FV +K
Sbjct: 106 IPTIWFVPMKG 116
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A+W CK + E+ K+ +V A+ +D P+ Y+V ++PT ++++
Sbjct: 24 LVDFWAEWCGPCKMIGPALGEIGKEFA-GKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82
Query: 82 NLKPVDRVEGADPES 96
+ K +D+ GA P+S
Sbjct: 83 DGKVIDKKVGALPKS 97
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
VV+ E+ ++ +V F+A W C+ ++ + +E+++ ++ + ++
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA-GRLKVVKVNVDEH 93
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
P L+ Y V +VPT V+ + PV GA P L+++L+
Sbjct: 94 PGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLR 134
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
KY DK A+V FYADW CK + + +E+SK+ ++ + + P+L+ ++ + +
Sbjct: 47 KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKEPELARDFGIQS 105
Query: 74 VPT--FVILKN 82
+PT FV +K
Sbjct: 106 IPTIWFVPMKG 116
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A WS K + F +S+ KYS V+F +D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWSGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W K + F +S+ KYS V+F +D ++ +V A PTF
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W CK + F +S+ KYS V+F +D ++ Y + +PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 78 VILKN 82
++ KN
Sbjct: 78 LLFKN 82
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A W C+ M + +E + ++ +V A+ ++ P+ + + + ++PT
Sbjct: 17 DGPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78 VILKNLKPVDRVEGADP-ESLDKKLQN 103
++ K +PV ++ G P E L+ +L +
Sbjct: 76 ILFKGGRPVKQLIGYQPKEQLEAQLAD 102
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A W C+ M + +E + ++ +V A+ ++ P+ + + + ++PT
Sbjct: 17 DGPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78 VILKNLKPVDRVEGADP-ESLDKKLQN 103
++ K +PV ++ G P E L+ +L +
Sbjct: 76 ILFKGGEPVKQLIGYQPKEQLEAQLAD 102
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W K + F +S+ KYS V+F +D ++ +V ++PTF
Sbjct: 31 DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKSMPTF 88
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 89 QFFKKGQKVGEFSGANKEKLE 109
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W K + F +S+ KYS V+F +D ++ +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M++V++++ D + + +V F+A W K + + +E++ + + + E
Sbjct: 4 MAIVKVTDA-DFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
+ P + Y+V ++PT ++ K+ +PVD+V G P E LDK L
Sbjct: 63 N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
+ AVV F C + F MS +KY Q VF + +SA PTF
Sbjct: 22 RLAVVKFTMRGCGPCLRIAPAFSSMS--NKYPQAVFLEVDVHQCQGTAATNNISATPTFQ 79
Query: 79 ILKNLKPVDRVEGADPESLDKKLQ 102
+N +D+ +GAD L++K++
Sbjct: 80 FFRNKVRIDQYQGADAVGLEEKIK 103
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+K +V F+A W K + + +E++ + + + + A+ + P+ + N++V ++PT
Sbjct: 27 NKPVLVDFWATWCGPSKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 85
Query: 78 VILKNLKPVDRVEGA 92
++ K+ +PV R+ GA
Sbjct: 86 ILFKDGQPVKRIVGA 100
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK VV F A W K + F +S+ KYS V+F +D ++ +V +PTF
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
K + V GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W CK + + DE++K+ ++ + ++ P ++ Y + ++PT + K
Sbjct: 21 MVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 82 NLKPVDRVEGADPES 96
N + + + GA P+S
Sbjct: 80 NGERKESIIGAVPKS 94
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W CK + + DE++K+ ++ + ++ P ++ Y + ++PT + K
Sbjct: 22 MVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 82 NLKPVDRVEGADPES 96
N + + + GA P+S
Sbjct: 81 NGERKESIIGAVPKS 95
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W C+ M F + + + QV A+ + P ++ +++ +P F++
Sbjct: 68 LVDFWAPWCGPCRQMAPQF-QAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 82 NLKPVDRVEGADPES 96
+ + R GA P S
Sbjct: 127 KGRELARAAGARPAS 141
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 21 AVVHFYADWSDECKHMNTLFDEMSKQSK-----YSQVVFARCIAEDLPKLSLNYKVSAVP 75
A+V+FYADW + ++ +F+E S K +QVVFAR + ++ Y++S P
Sbjct: 25 ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP 84
Query: 76 TFVILKN 82
T + +N
Sbjct: 85 TLKLFRN 91
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M++V++++ D + + +V F+A CK + + +E++ + + + E
Sbjct: 3 MAIVKVTDA-DFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
+ P + Y+V ++PT ++ K+ +PVD+V G P E LDK L
Sbjct: 62 N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K + +F A W + + + E+S+ Y ++F ++L S ++++ A PTF
Sbjct: 47 KIVLANFSARWCGPSRQIAPYYIELSEN--YPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 79 ILKNLKPVDRVEGADPESLDKKL 101
L++ + VD++ GA+ L KK+
Sbjct: 105 FLRDGQQVDKLVGANKPELHKKI 127
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFVI 79
+ +F+++ S C + + + ++ Q Q + A+ C AE + ++ + + A+PT +
Sbjct: 30 LFYFWSERSQHCLQLTPILESLAAQYN-GQFILAKLDCDAEQM--IAAQFGLRAIPTVYL 86
Query: 80 LKNLKPVDRVEGADPESLDKKL 101
+N +PVD +G PE + L
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRAL 108
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+D V F A W CK + ++++ + + V FA+ A++ ++ +V +PT
Sbjct: 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYE--FPTVKFAKVDADNNSEIVSKCRVLQLPT 93
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQN 103
F+I ++ K + V GA+P L +KL++
Sbjct: 94 FIIARSGKMLGHVIGANPGMLRQKLRD 120
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFVI 79
+ +F+++ S C + + + ++ Q + Q + A+ C AE ++ + + A+PT +
Sbjct: 30 LFYFWSERSQHCLQLTPVLESLAAQY-HGQFILAKLDCDAEQ--XIAAQFGLRAIPTVYL 86
Query: 80 LKNLKPVDRVEGADPESLDKKL 101
+N +PVD +G PE + L
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRAL 108
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
E D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 ESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
++ ++E+ D + D +V F+A+W CK + + DE++ + + ++ A+ +
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQ 62
Query: 62 LPKLSLNYKVSAVPTFVILKN 82
P + Y + +PT ++ KN
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++++ + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + ++ DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKV 71
K DK V+ + W CK M +++++++ Y V+F + C E+ L+ +
Sbjct: 33 KAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE--YLDVIFLKLDCNQEN-KTLAKELGI 89
Query: 72 SAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
VPTF ILK V V GA + L + +Q S
Sbjct: 90 RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 124
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKV 71
K DK V+ + W CK M +++++++ Y V+F + C E+ L+ +
Sbjct: 21 KAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE--YLDVIFLKLDCNQEN-KTLAKELGI 77
Query: 72 SAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
VPTF ILK V V GA + L + +Q S
Sbjct: 78 RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 112
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
S E DV K D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 11 SFETDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTA 67
Query: 67 LNYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 68 PKYGIRGIPTLLLFKN 83
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
++ ++++ D + D +V F+A+W CK + + DE++ + + ++ A+ +
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQ 62
Query: 62 LPKLSLNYKVSAVPTFVILKN 82
P + Y + +PT ++ KN
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKN 83
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W K + + DE++K+ ++ + ++ P ++ Y + ++PT + K
Sbjct: 22 MVDFWAPWCGPSKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 82 NLKPVDRVEGADPES 96
N + + + GA P+S
Sbjct: 81 NGERKESIIGAVPKS 95
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + ++PT ++ KN
Sbjct: 69 KYGIRSIPTLLLFKN 83
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+V F+A W C+ + + DE++ + K ++ + ++ P ++ Y + ++PT ++ K
Sbjct: 23 LVDFWAPWCGPCRIIAPVVDEIAGEYK-DKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 82 NLKPVDRVEGADPES 96
K + + GA P++
Sbjct: 82 GGKKCETIIGAVPKA 96
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 6 ISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL 65
I EEL+ +K T +V F+A+WS++C+ ++ ++S + + + F + +
Sbjct: 17 IDEELERDK---RVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDV 73
Query: 66 SLNYKVSA------VPTFVILKNLKPVDR 88
S YKVS +PT ++ + K R
Sbjct: 74 STRYKVSTSPLTKQLPTLILFQGGKEAMR 102
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQVVFARCIAEDLPKLS 66
+ D + + T++V FYA W CK +++ F + +K+ QV C L
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALC 84
Query: 67 LNYKVSAVPTFVILK 81
Y V+ PT ++ +
Sbjct: 85 AKYDVNGFPTLMVFR 99
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 23 VHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFV 78
+ FYA W CK + ++E+SK+ + V A C AE + Y V PT +
Sbjct: 26 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER--NICSKYSVRGYPTLL 83
Query: 79 ILKNLKPVDRVEGA-DPESLDKKLQNQA 105
+ + K V G D +SL + + +QA
Sbjct: 84 LFRGGKKVSEHSGGRDLDSLHRFVLSQA 111
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 78
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 79 KYGIRGIPTLLLFKN 93
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQ-SKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVI 79
+V FYA W CK + +++ +K+ SK S + A+ A + L+ + VS PT I
Sbjct: 28 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLKI 87
Query: 80 LKNLKPVD 87
+ +P D
Sbjct: 88 FRKGRPFD 95
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 69
Query: 68 NYKVSAVPTFVILKN 82
Y + PT ++ KN
Sbjct: 70 KYGIRGTPTLLLFKN 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + D+++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 23 VHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFV 78
+ FYA W CK + ++E+SK+ + V A C AE + Y V PT +
Sbjct: 28 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER--NICSKYSVRGYPTLL 85
Query: 79 ILKNLKPVDRVEGA-DPESLDKKLQNQA 105
+ + K V G D +SL + + +QA
Sbjct: 86 LFRGGKKVSEHSGGRDLDSLHRFVLSQA 113
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 23 VHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFV 78
+ FYA W CK + ++E+SK+ + V A C AE + Y V PT +
Sbjct: 21 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER--NICSKYSVRGYPTLL 78
Query: 79 ILKNLKPV-DRVEGADPESLDKKLQNQA 105
+ + K V + G D +SL + + +QA
Sbjct: 79 LFRGGKKVSEHSGGRDLDSLHRFVLSQA 106
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W C+ + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + +E++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS-KQSKYSQVVFAR--CIAE 60
V ++E D ++K ++ FYA W CK++ + E+ K SK +V A+ A
Sbjct: 31 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 90
Query: 61 DLPKLSLNYKVSAVPTFVIL---KNLKPVDRVEGADPESLDKKLQNQAST 107
D+P Y+V PT K L P G + LQ +A++
Sbjct: 91 DVPSP---YEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATS 137
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
Length = 140
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K VV FY+ CK F+E +K+ S VF R P + Y V PTF
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYG-SSAVFGRINIATNPWTAEKYGVQGTPTFK 83
Query: 79 ILKNLKPV 86
+ +PV
Sbjct: 84 FFCHGRPV 91
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
VV F A W CK + LF+ +S +V+F + + + ++ ++A+PTF + K
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYA-GKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 82 NLKPVDRVEGADPESLDKKLQNQAST 107
+ D + GA + L + A+
Sbjct: 87 DGVKADDLVGASQDKLKALVAKHAAA 112
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQ-SKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVI 79
+V FYA W CK + +++ +K+ SK S + A+ A L+ + VS PT I
Sbjct: 151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKI 210
Query: 80 LKNLKPVD 87
+ +P D
Sbjct: 211 FRKGRPYD 218
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 20 TAVVHFYADWSDECKHMNTLFDEMSK--QSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
T ++ FYA W CK +++++ + K + A+ A L+ + VS PT
Sbjct: 34 TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93
Query: 78 VILKNLKPVD 87
ILK + VD
Sbjct: 94 KILKKGQAVD 103
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
++ + V+ F A W CK N + + Q Y V + PKL+ + + A+PT
Sbjct: 39 QNSSIVIKFGAVW---CKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPKLNDQHNIKALPT 95
Query: 77 FVILKNLKP----VDRVEGADPESLDKKLQ 102
F NL V VEGA+ ++K Q
Sbjct: 96 FEFYFNLNNEWVLVHTVEGANQNDIEKAFQ 125
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
+++V E D E +K +V +A+W C ++ +++++ K + VF R +
Sbjct: 5 VTLVLTEENFD-EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK-GKAVFGRLNVD 62
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLD 98
+ K++ Y V +PT +I N + VD + GA D ++L+
Sbjct: 63 ENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLE 101
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
VV F A W CK + LF+ +S +V+F + + + ++ ++A+PTF + K
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYA-GKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 82 NLKPVDRVEGADPESLDKKLQNQAST 107
+ D + GA + L + A+
Sbjct: 87 DGVKADDLVGASQDKLKALVAKHAAA 112
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ--VVFARCIAEDLPKLSLNYKVSAVPTF 77
T ++ FYA W CK +++++ K + + A+ A L+ + VS PT
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI 95
Query: 78 VILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVP 119
ILK + VD E + K++ + P +T P
Sbjct: 96 KILKKGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVTSGP 137
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W CK + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y +PT ++ KN
Sbjct: 69 KYIERGIPTLLLFKN 83
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W K + + DE++ + + ++ A+ + P +
Sbjct: 30 DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 88
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 89 KYGIRGIPTLLLFKN 103
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK---LSLNYKVSA 73
K+ V++F+A W C +T D++ Q Y + ++ + DL K L+ + V +
Sbjct: 41 KNTVIVLYFFAKWCQACTMQSTEMDKL--QKYYGKRIYL--LKVDLDKNESLARKFSVKS 96
Query: 74 VPTFVILKN 82
+PT ++LKN
Sbjct: 97 LPTIILLKN 105
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKV 71
K DK V+ + W K M +++++++ Y V+F + C E+ L+ +
Sbjct: 20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEE--YLDVIFLKLDCNQEN-KTLAKELGI 76
Query: 72 SAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
VPTF ILK V V GA + L + +Q S
Sbjct: 77 RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 111
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W K + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80
++ F W CK M F+EM+ Q + + FA AED K + +P+ +
Sbjct: 21 IIMFTGSWCQPCKKMKPTFEEMASQME-GDIRFAYMDAEDAEKTMAELNIRTLPSLALF 78
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS-KQSKYSQVVFAR--CIAE 60
V ++E D ++K ++ FYA W CK++ + E+ K SK +V A+ A
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415
Query: 61 DLPKLSLNYKVSAVPTFVIL---KNLKPVDRVEGADPESLDKKLQNQAS 106
D+P Y+V PT K L P G + LQ +A+
Sbjct: 416 DVPS---PYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREAT 461
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
V+ I++ E + E ++ +V+F+A W C+ M+ L + ++ + ++ + +
Sbjct: 8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN-LAANTYSDRLKVVKLEID 66
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEG 91
P YKV VP ++K + +D EG
Sbjct: 67 PNPTTVKKYKVEGVPALRLVKGEQILDSTEG 97
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ D + D +V F+A+W K + + DE++ + + ++ A+ + P +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 68
Query: 68 NYKVSAVPTFVILKN 82
Y + +PT ++ KN
Sbjct: 69 KYGIRGIPTLLLFKN 83
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 6 ISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLP 63
+E L KY +V FYA W CK + + + + + K S++ A+ A +
Sbjct: 17 FAEALAAHKY-----LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES 71
Query: 64 KLSLNYKVSAVPTFVILKN 82
L+ Y V PT +N
Sbjct: 72 DLAQQYGVRGYPTIKFFRN 90
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced
Form
Length = 110
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 1 MSVVQ-ISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
MS ++ I+ E + + A+V F+ + CK+M + D+ ++ QV + +
Sbjct: 1 MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFG--ARAPQVAISSVDS 58
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLK 84
E P+L VPT V +++ K
Sbjct: 59 EARPELMKELGFERVPTLVFIRDGK 83
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVSAVPT- 76
K ++ FYA W CK + ++ + K+ K + +V A+ A + YKV PT
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 77 -FVILKNLKPVDRVEGA--DPESLDKKLQNQAS 106
F + K + EG D E L K + A+
Sbjct: 86 YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
++ FYA W C+++ ++ ++ + +V A+ + P LS + ++A+PT K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 82 N 82
+
Sbjct: 86 D 86
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 153 FDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS 209
D L D +++ L ++ T P V++ + IGG D + E N+L+P L ++
Sbjct: 52 LDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFA-RCIAEDLPK---LSLNYKVSA 73
+ +V+F+++ C+ MNT S+ + F ++ D P+ L+ Y+V
Sbjct: 19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPG 78
Query: 74 VPTFVIL----KNLKPVDRVEGADPES 96
PTFV L + V R+ G+ P +
Sbjct: 79 TPTFVFLVPKAGAWEEVGRLFGSRPRA 105
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 153 FDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS 209
D L D +++ L ++ T P V++ + IGG D + E N+L+P L ++
Sbjct: 53 LDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 110
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK 84
F+A W CK + + +E+ Q ++ + ++ + + Y V ++PT ++LK+ +
Sbjct: 24 FWAPWCGPCKMIAPVLEELD-QEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGE 82
Query: 85 PVDRVEGADPESLDKKLQNQ 104
V+ G P+ ++L N+
Sbjct: 83 VVETSVGFKPKEALQELVNK 102
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
S E DV K DK +V F+A W C+ + + ++ + ++ + ++ P +
Sbjct: 14 SFEQDVLK--NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG-DKIEIVKLNIDENPGTA 70
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPES 96
Y V ++PT + + + + GA P++
Sbjct: 71 AKYGVMSIPTLNVYQGGEVAKTIVGAKPKA 100
>pdb|2YGL|A Chain A, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71
pdb|2YGL|B Chain B, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71
pdb|2YGM|A Chain A, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71, In Complex With The
Blood Group B Antigen
pdb|2YGM|B Chain B, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71, In Complex With The
Blood Group B Antigen
Length = 354
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 117 HVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEV 161
H+ D DI + + V +G IYS+ YP+ + YDT L D E+
Sbjct: 277 HLNSDYADIQKFEVVADGKVIYSSDSKYPKGIKYDTSAFLVDVEI 321
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 173 TYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
+ PQ++++ + IGG D I L A KL P L
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 22 VVHFYADWSDECKHMN----TLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+V FYA W CK++ E+ +Q+K +V A A L+ Y + PT
Sbjct: 29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTK-GKVKLAAVDATVNQVLASRYGIRGFPTI 87
Query: 78 VIL-KNLKPVD 87
I K PVD
Sbjct: 88 KIFQKGESPVD 98
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
++ D E+R ++ S T+PQ+++ + +GG D + L+ KL
Sbjct: 33 FNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKL 82
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFAR 56
V + + + + + K V FYA W CK + ++D++ + K + +V A+
Sbjct: 11 VLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 64
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFAR 56
+ + K V FYA W CK + ++D++ + K + +V A+
Sbjct: 264 FDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 306
>pdb|3AQP|A Chain A, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
pdb|3AQP|B Chain B, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
Length = 741
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 167 IYSNW-PTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
++ W P P+V + +L GGL I+ E V N PTLD
Sbjct: 22 VWKPWAPEEPKVRLGLDLKGGLRIVLEADVEN---PTLD 57
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 131 VREGLKIYSNWPTYPQVVPY-DTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDI 189
R +I S P ++ + D E+++ L+ + T P+V++ + IGG
Sbjct: 26 CRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSD 85
Query: 190 IKELQVANKLIPTLDQ 205
+ LQ + +L+ L Q
Sbjct: 86 LVSLQQSGELLTRLKQ 101
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 157 QDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
+E++E +K+ + T P + VN GG + IK+L KL+ +L
Sbjct: 54 HGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESL 100
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 160 EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
E+++ L+ S T P VY+N + IGG ++ L+ KL L
Sbjct: 64 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 160 EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
E+++ L+ S T P VY+N + IGG ++ L+ KL L
Sbjct: 61 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 160 EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
E+++ L+ S T P VY+N + IGG ++ L+ KL L
Sbjct: 81 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|4DEY|B Chain B, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 106
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 125 ILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184
+ + Q++ E LK Y +W T + + + D D+E + + PT VNTE +
Sbjct: 21 LREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEEKPRNMSM----PTSETESVNTENV 76
Query: 185 GGLDIIKE 192
G DI E
Sbjct: 77 AGGDIEGE 84
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEM----SKQSKYSQVVFAR--CIAEDLP 63
K ++ FYA W CK + ++E+ +K +VV A+ A D+P
Sbjct: 26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVP 76
>pdb|1QR5|A Chain A, Solution Structure Of Histidine Containing Protein (Hpr)
From Staphylococcus Carnosus
Length = 88
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQS 47
+ V G K A + YAD SDE + + D +SK+
Sbjct: 48 MGVMSLGVGKDAEITIYADGSDEADAIQAITDVLSKEG 85
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/81 (17%), Positives = 34/81 (41%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+ F+A W CK+M + + ++ + A+ + L + + + P+ I K
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 94
Query: 82 NLKPVDRVEGADPESLDKKLQ 102
N + ++ P + + +Q
Sbjct: 95 NSDVNNSIDYEGPRTAEAIVQ 115
>pdb|1TXE|A Chain A, Solution Structure Of The Active-Centre Mutant Ile14ala
Of The Histidine-Containing Phosphocarrier Protein
(Hpr) From Staphylococcus Carnosus
Length = 88
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQS 47
+ V G K A + YAD SDE + + D +SK+
Sbjct: 48 MGVMSLGVGKDAEITIYADGSDEADAIQAITDVLSKEG 85
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK 84
F+A W K + + +E+ Q ++ + ++ + + Y V ++PT ++LK+ +
Sbjct: 24 FWAPWCGPSKMIAPVLEELD-QEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGE 82
Query: 85 PVDRVEGADPESLDKKLQNQ 104
V+ G P+ ++L N+
Sbjct: 83 VVETSVGFKPKEALQELVNK 102
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK 84
F+A W K + + +E+ Q ++ + ++ + + Y V ++PT ++LK+ +
Sbjct: 24 FWAPWCGPSKMIAPVLEELD-QEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGE 82
Query: 85 PVDRVEGADPESLDKKLQNQ 104
V+ G P+ ++L N+
Sbjct: 83 VVETSVGFKPKEALQELVNK 102
>pdb|1KA5|A Chain A, Refined Solution Structure Of Histidine Containing
Phosphocarrier Protein From Staphyloccocus Aureus
Length = 88
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQS 47
+ V G K A + YAD SDE + + D +SK+
Sbjct: 48 MGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEG 85
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 136 KIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV 195
+++S+ V+ D D V+E L +N T P ++VN +GG D +
Sbjct: 35 ELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQ 92
Query: 196 ANKLIPTLDQPPSSDLEN 213
+ L L + + D EN
Sbjct: 93 SGLLQKLLQEDLAYDAEN 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,581,842
Number of Sequences: 62578
Number of extensions: 277225
Number of successful extensions: 809
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 183
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)