Query psy15246
Match_columns 213
No_of_seqs 274 out of 2785
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 01:06:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00062 glutaredoxin; Provisi 100.0 3.7E-38 7.9E-43 245.3 15.3 171 9-205 7-200 (204)
2 KOG0911|consensus 100.0 3.7E-36 8E-41 231.0 10.8 186 1-205 1-226 (227)
3 COG0278 Glutaredoxin-related p 99.9 4E-27 8.7E-32 158.3 7.4 95 96-205 3-103 (105)
4 KOG0910|consensus 99.9 2E-24 4.4E-29 157.5 9.2 97 9-106 52-149 (150)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 8.4E-24 1.8E-28 150.7 11.5 98 2-100 10-112 (113)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.6E-23 7.7E-28 145.0 11.8 97 3-100 3-100 (101)
7 PF00085 Thioredoxin: Thioredo 99.9 7.6E-23 1.6E-27 143.1 12.3 101 3-104 1-103 (103)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.7E-22 3.6E-27 142.3 10.9 99 2-101 2-104 (104)
9 cd02948 TRX_NDPK TRX domain, T 99.9 4.7E-22 1E-26 139.7 11.3 97 6-103 4-101 (102)
10 COG3118 Thioredoxin domain-con 99.9 2.5E-22 5.5E-27 161.1 10.9 103 3-106 25-131 (304)
11 cd03065 PDI_b_Calsequestrin_N 99.9 2.5E-22 5.5E-27 144.2 9.8 101 3-105 11-119 (120)
12 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.4E-22 1.2E-26 140.7 10.9 100 2-101 2-108 (108)
13 cd02954 DIM1 Dim1 family; Dim1 99.9 4.6E-22 1E-26 140.9 9.8 77 16-93 12-88 (114)
14 PHA02278 thioredoxin-like prot 99.9 5.7E-22 1.2E-26 139.1 10.0 90 9-99 5-99 (103)
15 cd02985 TRX_CDSP32 TRX family, 99.9 9.6E-22 2.1E-26 138.3 10.0 86 16-103 13-101 (103)
16 KOG0907|consensus 99.9 1E-21 2.2E-26 138.1 9.5 87 16-104 19-105 (106)
17 cd02994 PDI_a_TMX PDIa family, 99.9 2.1E-21 4.6E-26 135.9 11.1 99 2-103 2-101 (101)
18 PRK09381 trxA thioredoxin; Pro 99.9 3.5E-21 7.7E-26 136.6 11.8 102 3-105 5-108 (109)
19 cd02963 TRX_DnaJ TRX domain, D 99.9 1.3E-21 2.8E-26 139.5 9.2 88 16-103 22-110 (111)
20 cd02956 ybbN ybbN protein fami 99.9 3.4E-21 7.3E-26 133.6 10.7 89 12-101 5-95 (96)
21 PRK10996 thioredoxin 2; Provis 99.9 6.9E-21 1.5E-25 141.0 11.8 101 3-104 37-138 (139)
22 KOG0191|consensus 99.9 1.6E-21 3.6E-26 167.0 9.6 172 9-183 38-230 (383)
23 KOG0908|consensus 99.9 2.3E-21 5E-26 151.2 9.5 105 1-107 1-108 (288)
24 cd03002 PDI_a_MPD1_like PDI fa 99.9 9.3E-21 2E-25 134.3 11.4 99 2-101 1-108 (109)
25 cd02999 PDI_a_ERp44_like PDIa 99.9 4E-21 8.7E-26 134.4 9.2 83 16-101 16-100 (100)
26 cd03005 PDI_a_ERp46 PDIa famil 99.8 7.1E-21 1.5E-25 133.2 10.1 98 3-101 2-102 (102)
27 PTZ00443 Thioredoxin domain-co 99.8 7.3E-21 1.6E-25 150.6 11.4 109 3-112 32-146 (224)
28 TIGR02187 GlrX_arch Glutaredox 99.8 1.1E-20 2.4E-25 149.8 12.1 166 13-187 15-203 (215)
29 PTZ00051 thioredoxin; Provisio 99.8 1E-20 2.2E-25 131.6 10.2 96 2-99 1-97 (98)
30 cd02989 Phd_like_TxnDC9 Phosdu 99.8 8.3E-21 1.8E-25 135.7 9.9 90 2-93 5-95 (113)
31 PLN00410 U5 snRNP protein, DIM 99.8 1.6E-20 3.4E-25 138.0 11.1 108 3-111 5-127 (142)
32 KOG0190|consensus 99.8 6.5E-21 1.4E-25 163.9 9.2 105 3-107 27-134 (493)
33 cd02997 PDI_a_PDIR PDIa family 99.8 2.6E-20 5.7E-25 130.6 10.3 100 2-101 1-104 (104)
34 cd02957 Phd_like Phosducin (Ph 99.8 1.4E-20 3.1E-25 134.5 8.6 88 3-93 6-96 (113)
35 cd02965 HyaE HyaE family; HyaE 99.8 2.9E-20 6.2E-25 130.9 9.6 93 5-98 14-109 (111)
36 cd03001 PDI_a_P5 PDIa family, 99.8 8.3E-20 1.8E-24 127.9 10.8 98 3-101 2-102 (103)
37 cd02984 TRX_PICOT TRX domain, 99.8 4.9E-20 1.1E-24 127.8 9.5 90 11-101 5-96 (97)
38 cd02962 TMX2 TMX2 family; comp 99.8 5.5E-20 1.2E-24 137.4 10.2 91 3-93 30-128 (152)
39 PRK10824 glutaredoxin-4; Provi 99.8 3.7E-20 7.9E-25 131.4 7.8 94 97-206 4-103 (115)
40 cd03000 PDI_a_TMX3 PDIa family 99.8 1.7E-19 3.7E-24 127.0 10.8 99 3-104 2-103 (104)
41 cd02993 PDI_a_APS_reductase PD 99.8 2.2E-19 4.8E-24 127.5 10.5 100 2-101 2-109 (109)
42 TIGR01126 pdi_dom protein disu 99.8 3.6E-19 7.8E-24 124.2 10.7 98 7-104 2-101 (102)
43 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.8E-19 6.1E-24 127.1 10.0 98 2-104 2-115 (116)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 4.9E-19 1.1E-23 124.1 11.0 99 2-101 1-104 (104)
45 TIGR01068 thioredoxin thioredo 99.8 5.4E-19 1.2E-23 122.9 10.5 88 16-104 12-100 (101)
46 cd02986 DLP Dim1 family, Dim1- 99.8 3.9E-19 8.4E-24 125.1 9.3 72 16-88 12-83 (114)
47 cd02950 TxlA TRX-like protein 99.8 4.6E-19 1E-23 131.6 10.1 97 10-107 12-112 (142)
48 cd02998 PDI_a_ERp38 PDIa famil 99.8 1E-18 2.2E-23 122.5 10.7 99 3-101 2-105 (105)
49 cd02949 TRX_NTR TRX domain, no 99.8 1.3E-18 2.7E-23 121.0 10.2 89 12-101 7-96 (97)
50 cd02953 DsbDgamma DsbD gamma f 99.8 1E-18 2.2E-23 122.9 9.7 90 11-101 4-103 (104)
51 cd02987 Phd_like_Phd Phosducin 99.8 6.9E-19 1.5E-23 134.9 9.4 90 2-94 63-156 (175)
52 cd02961 PDI_a_family Protein D 99.8 2.3E-18 5.1E-23 119.2 9.9 96 5-100 2-100 (101)
53 cd02975 PfPDO_like_N Pyrococcu 99.8 4.8E-18 1E-22 121.4 10.6 93 12-106 16-111 (113)
54 cd02992 PDI_a_QSOX PDIa family 99.8 6.8E-18 1.5E-22 120.8 9.8 83 2-84 2-89 (114)
55 TIGR01130 ER_PDI_fam protein d 99.7 1.4E-17 3E-22 145.5 11.5 104 3-106 3-110 (462)
56 PTZ00102 disulphide isomerase; 99.7 1.7E-17 3.6E-22 145.9 11.5 104 3-107 34-140 (477)
57 TIGR00424 APS_reduc 5'-adenyly 99.7 2.4E-17 5.3E-22 142.5 12.2 102 3-104 353-462 (463)
58 PLN02309 5'-adenylylsulfate re 99.7 2.5E-17 5.5E-22 142.3 12.0 102 3-104 347-456 (457)
59 TIGR01295 PedC_BrcD bacterioci 99.7 2.5E-17 5.4E-22 119.2 9.5 96 4-102 9-121 (122)
60 KOG4277|consensus 99.7 5.5E-18 1.2E-22 135.9 6.1 93 15-107 40-134 (468)
61 cd02988 Phd_like_VIAF Phosduci 99.7 3.3E-17 7.2E-22 127.2 8.2 87 2-93 83-172 (192)
62 cd02951 SoxW SoxW family; SoxW 99.7 9.5E-17 2.1E-21 116.6 10.0 94 12-106 7-120 (125)
63 cd02947 TRX_family TRX family; 99.7 1.6E-16 3.4E-21 108.0 9.4 88 12-101 4-92 (93)
64 KOG0912|consensus 99.7 8.7E-17 1.9E-21 129.0 8.3 101 7-107 2-108 (375)
65 TIGR00365 monothiol glutaredox 99.7 1.7E-16 3.8E-21 110.1 7.9 56 148-203 42-97 (97)
66 KOG0190|consensus 99.7 1.1E-16 2.5E-21 137.9 8.4 102 2-105 367-473 (493)
67 PTZ00102 disulphide isomerase; 99.7 3.9E-16 8.4E-21 137.3 11.9 104 3-106 359-466 (477)
68 cd02982 PDI_b'_family Protein 99.7 5.8E-16 1.3E-20 108.4 10.1 87 17-104 11-102 (103)
69 cd02952 TRP14_like Human TRX-r 99.7 3.7E-16 8E-21 111.9 8.9 77 10-87 11-104 (119)
70 TIGR00411 redox_disulf_1 small 99.6 2.2E-15 4.7E-20 101.1 9.3 79 21-104 2-81 (82)
71 KOG0191|consensus 99.6 3.9E-15 8.5E-20 127.7 11.4 169 3-174 146-348 (383)
72 cd02959 ERp19 Endoplasmic reti 99.6 5.6E-15 1.2E-19 106.1 7.5 76 14-90 15-94 (117)
73 PHA02125 thioredoxin-like prot 99.6 1.2E-14 2.5E-19 96.2 7.5 63 22-94 2-64 (75)
74 cd03028 GRX_PICOT_like Glutare 99.5 1.4E-14 3.1E-19 99.2 6.7 53 148-200 38-90 (90)
75 TIGR01130 ER_PDI_fam protein d 99.5 6.3E-14 1.4E-18 122.5 11.0 102 3-106 348-455 (462)
76 TIGR02180 GRX_euk Glutaredoxin 99.5 9.8E-14 2.1E-18 93.4 9.4 42 162-203 43-84 (84)
77 TIGR02187 GlrX_arch Glutaredox 99.5 1E-13 2.2E-18 110.0 9.5 80 19-103 134-214 (215)
78 KOG1731|consensus 99.5 1.9E-14 4.1E-19 124.4 5.5 105 2-106 40-154 (606)
79 TIGR00412 redox_disulf_2 small 99.5 7.7E-14 1.7E-18 92.5 7.2 71 23-101 3-75 (76)
80 TIGR02189 GlrX-like_plant Glut 99.5 2.5E-14 5.5E-19 99.6 5.1 60 148-207 33-95 (99)
81 cd03031 GRX_GRX_like Glutaredo 99.5 4.8E-14 1E-18 104.5 6.6 62 148-209 31-96 (147)
82 PRK14018 trifunctional thiored 99.5 1.6E-13 3.4E-18 120.5 10.5 91 14-104 52-172 (521)
83 PF13098 Thioredoxin_2: Thiore 99.5 9.1E-14 2E-18 98.7 6.4 85 16-101 3-112 (112)
84 cd02955 SSP411 TRX domain, SSP 99.5 3E-13 6.6E-18 97.8 9.1 81 11-92 8-100 (124)
85 PHA03050 glutaredoxin; Provisi 99.5 7.7E-14 1.7E-18 98.5 4.9 60 149-208 42-104 (108)
86 cd03030 GRX_SH3BGR Glutaredoxi 99.4 2.2E-13 4.8E-18 93.2 6.4 57 148-204 31-91 (92)
87 PRK00293 dipZ thiol:disulfide 99.4 6.3E-13 1.4E-17 119.1 10.8 87 16-104 472-569 (571)
88 cd02973 TRX_GRX_like Thioredox 99.4 5.3E-13 1.2E-17 86.1 7.2 59 22-84 3-61 (67)
89 TIGR02740 TraF-like TraF-like 99.4 1.7E-12 3.6E-17 106.2 10.3 88 17-105 165-264 (271)
90 cd03009 TryX_like_TryX_NRX Try 99.4 1.6E-12 3.4E-17 95.0 8.7 71 17-87 17-114 (131)
91 PRK03147 thiol-disulfide oxido 99.4 4.2E-12 9.1E-17 96.9 11.1 88 17-104 60-171 (173)
92 cd02964 TryX_like_family Trypa 99.4 1.9E-12 4.1E-17 94.9 8.7 71 17-87 16-114 (132)
93 cd03008 TryX_like_RdCVF Trypar 99.4 2.1E-12 4.5E-17 95.9 8.6 71 17-87 24-127 (146)
94 TIGR02738 TrbB type-F conjugat 99.4 4.5E-12 9.8E-17 95.0 10.5 89 15-104 47-152 (153)
95 PRK15412 thiol:disulfide inter 99.4 3.9E-12 8.5E-17 98.5 10.4 88 15-106 65-177 (185)
96 cd03010 TlpA_like_DsbE TlpA-li 99.4 4E-12 8.6E-17 92.3 8.3 76 17-95 24-123 (127)
97 PF13905 Thioredoxin_8: Thiore 99.3 1.2E-11 2.6E-16 85.2 9.7 67 18-84 1-94 (95)
98 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 6.4E-12 1.4E-16 90.6 8.8 81 16-99 18-120 (123)
99 TIGR02181 GRX_bact Glutaredoxi 99.3 3.1E-12 6.8E-17 85.3 6.5 56 148-203 24-79 (79)
100 PRK11509 hydrogenase-1 operon 99.3 1.3E-11 2.8E-16 89.5 10.1 96 11-106 27-125 (132)
101 TIGR00385 dsbE periplasmic pro 99.3 1E-11 2.2E-16 95.2 10.0 88 15-106 60-172 (173)
102 cd02966 TlpA_like_family TlpA- 99.3 8.6E-12 1.9E-16 87.7 8.8 75 17-91 18-116 (116)
103 PRK10638 glutaredoxin 3; Provi 99.3 6.3E-12 1.4E-16 84.7 6.6 57 148-204 27-83 (83)
104 KOG1752|consensus 99.3 5.4E-12 1.2E-16 87.9 6.2 56 151-206 44-100 (104)
105 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 1.3E-11 2.9E-16 84.2 7.8 67 17-87 11-77 (89)
106 PLN02919 haloacid dehalogenase 99.3 1.3E-11 2.8E-16 117.5 10.5 90 17-106 419-537 (1057)
107 PRK11200 grxA glutaredoxin 1; 99.3 3.2E-11 6.9E-16 81.6 9.2 40 21-62 2-41 (85)
108 cd03012 TlpA_like_DipZ_like Tl 99.2 5.4E-11 1.2E-15 86.4 8.7 75 17-91 22-124 (126)
109 TIGR02183 GRXA Glutaredoxin, G 99.2 6.1E-11 1.3E-15 80.4 8.4 27 172-198 56-82 (86)
110 cd02958 UAS UAS family; UAS is 99.2 1.6E-10 3.5E-15 82.5 9.6 90 15-105 14-111 (114)
111 cd03419 GRX_GRXh_1_2_like Glut 99.2 5.1E-11 1.1E-15 79.7 4.8 55 148-202 25-82 (82)
112 PRK13728 conjugal transfer pro 99.1 3.9E-10 8.5E-15 86.3 9.9 82 22-106 73-172 (181)
113 PF08534 Redoxin: Redoxin; In 99.1 3.2E-10 7E-15 84.2 9.0 79 16-94 26-136 (146)
114 cd02960 AGR Anterior Gradient 99.1 1.9E-10 4.2E-15 83.3 7.5 77 15-93 20-100 (130)
115 cd02967 mauD Methylamine utili 99.1 1E-10 2.2E-15 83.1 6.0 60 17-77 20-82 (114)
116 cd03027 GRX_DEP Glutaredoxin ( 99.1 4.8E-11 1E-15 78.4 3.8 48 148-195 26-73 (73)
117 cd03418 GRX_GRXb_1_3_like Glut 99.1 2.1E-10 4.5E-15 75.5 6.3 50 148-197 25-75 (75)
118 PTZ00056 glutathione peroxidas 99.1 4.3E-10 9.3E-15 88.1 8.3 90 17-106 38-179 (199)
119 KOG0914|consensus 99.1 2.3E-10 5.1E-15 88.2 6.0 85 9-93 133-225 (265)
120 TIGR02661 MauD methylamine deh 99.1 1.1E-09 2.3E-14 85.2 9.7 86 17-104 73-178 (189)
121 PF13899 Thioredoxin_7: Thiore 99.1 2.4E-10 5.3E-15 76.7 5.0 66 14-81 13-81 (82)
122 cd02969 PRX_like1 Peroxiredoxi 99.0 3.3E-09 7.3E-14 81.0 11.4 93 15-107 22-154 (171)
123 PLN02399 phospholipid hydroper 99.0 1.7E-09 3.6E-14 86.5 9.5 90 17-106 98-235 (236)
124 COG0526 TrxA Thiol-disulfide i 99.0 1.7E-09 3.7E-14 75.6 8.6 73 18-91 32-107 (127)
125 TIGR02196 GlrX_YruB Glutaredox 99.0 1.8E-09 3.8E-14 70.2 6.6 68 22-101 2-73 (74)
126 COG4232 Thiol:disulfide interc 99.0 2.5E-09 5.3E-14 93.9 8.9 91 12-104 466-567 (569)
127 smart00594 UAS UAS domain. 99.0 5E-09 1.1E-13 75.7 9.1 86 15-101 24-121 (122)
128 PLN02412 probable glutathione 99.0 4.2E-09 9.1E-14 80.3 8.9 90 17-106 28-165 (167)
129 KOG1672|consensus 99.0 1.4E-09 2.9E-14 82.6 6.0 91 2-94 67-158 (211)
130 PF02114 Phosducin: Phosducin; 99.0 2.5E-09 5.4E-14 87.0 8.0 99 3-104 127-237 (265)
131 COG0695 GrxC Glutaredoxin and 98.9 1.7E-09 3.7E-14 72.2 5.2 52 148-199 26-79 (80)
132 KOG2824|consensus 98.9 1.2E-09 2.5E-14 87.2 4.4 70 131-208 153-226 (281)
133 TIGR02200 GlrX_actino Glutared 98.9 6.3E-09 1.4E-13 68.5 7.1 70 22-102 2-76 (77)
134 cd01659 TRX_superfamily Thiore 98.8 1.7E-08 3.7E-13 62.7 7.3 60 22-83 1-63 (69)
135 KOG0913|consensus 98.8 1.2E-09 2.7E-14 85.2 2.3 99 4-104 27-125 (248)
136 TIGR01626 ytfJ_HI0045 conserve 98.8 1.2E-08 2.5E-13 78.6 7.3 83 17-99 58-174 (184)
137 COG2143 Thioredoxin-related pr 98.8 4.3E-08 9.3E-13 72.1 9.3 87 14-101 38-145 (182)
138 TIGR02540 gpx7 putative glutat 98.8 2.6E-08 5.5E-13 74.7 8.5 43 17-59 21-63 (153)
139 cd00340 GSH_Peroxidase Glutath 98.8 1.3E-08 2.9E-13 76.2 6.8 43 17-60 21-63 (152)
140 cd02066 GRX_family Glutaredoxi 98.8 6.6E-09 1.4E-13 67.0 4.0 48 148-195 25-72 (72)
141 KOG2501|consensus 98.8 1.3E-08 2.9E-13 75.4 5.7 71 17-87 32-130 (157)
142 cd03017 PRX_BCP Peroxiredoxin 98.8 3.3E-08 7.2E-13 72.6 7.3 83 17-99 22-137 (140)
143 cd03029 GRX_hybridPRX5 Glutare 98.7 2.1E-08 4.6E-13 65.4 5.4 46 148-194 26-71 (72)
144 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 9.7E-08 2.1E-12 68.5 8.9 68 17-84 24-119 (124)
145 PF04908 SH3BGR: SH3-binding, 98.7 3.1E-08 6.8E-13 68.4 5.0 58 148-205 32-98 (99)
146 TIGR03143 AhpF_homolog putativ 98.7 3.4E-07 7.4E-12 82.3 12.6 159 17-185 365-543 (555)
147 PF14595 Thioredoxin_9: Thiore 98.6 9.1E-08 2E-12 69.7 6.7 83 17-102 40-126 (129)
148 PF13728 TraF: F plasmid trans 98.6 3E-07 6.4E-12 72.8 9.0 83 17-100 119-213 (215)
149 TIGR02190 GlrX-dom Glutaredoxi 98.6 1.6E-07 3.4E-12 62.5 5.4 46 148-194 33-78 (79)
150 PTZ00256 glutathione peroxidas 98.5 4.6E-07 9.9E-12 70.1 8.5 44 17-60 39-83 (183)
151 KOG3414|consensus 98.5 7.5E-07 1.6E-11 63.1 8.4 71 16-87 21-91 (142)
152 cd03018 PRX_AhpE_like Peroxire 98.5 5.2E-07 1.1E-11 67.0 8.2 78 16-93 26-134 (149)
153 PF13192 Thioredoxin_3: Thiore 98.5 5.7E-07 1.2E-11 59.4 7.5 72 23-102 3-76 (76)
154 cd03015 PRX_Typ2cys Peroxiredo 98.5 5.5E-07 1.2E-11 68.9 8.5 88 17-104 28-156 (173)
155 cd03014 PRX_Atyp2cys Peroxired 98.5 5.8E-07 1.3E-11 66.4 8.4 74 17-92 25-129 (143)
156 PRK00522 tpx lipid hydroperoxi 98.5 7.7E-07 1.7E-11 67.8 9.0 42 17-60 43-85 (167)
157 cd02970 PRX_like2 Peroxiredoxi 98.5 4.9E-07 1.1E-11 66.9 7.7 48 17-64 22-70 (149)
158 PRK09437 bcp thioredoxin-depen 98.5 6.1E-07 1.3E-11 67.2 8.2 79 17-95 29-142 (154)
159 cd02976 NrdH NrdH-redoxin (Nrd 98.5 5.5E-07 1.2E-11 58.1 6.6 67 22-100 2-72 (73)
160 TIGR03137 AhpC peroxiredoxin. 98.5 6.9E-07 1.5E-11 69.3 8.1 73 17-89 30-135 (187)
161 PF03190 Thioredox_DsbH: Prote 98.5 3.8E-07 8.2E-12 68.6 6.2 76 11-87 30-117 (163)
162 cd03007 PDI_a_ERp29_N PDIa fam 98.5 1.4E-07 3.1E-12 67.2 3.6 66 115-182 3-91 (116)
163 PF06110 DUF953: Eukaryotic pr 98.5 8.2E-07 1.8E-11 63.5 7.4 67 16-83 17-99 (119)
164 cd02971 PRX_family Peroxiredox 98.4 1.6E-06 3.4E-11 63.6 7.5 77 17-93 21-130 (140)
165 COG0278 Glutaredoxin-related p 98.4 3.5E-07 7.5E-12 62.2 3.5 73 71-157 12-89 (105)
166 TIGR02739 TraF type-F conjugat 98.4 3.2E-06 7E-11 68.3 9.5 89 17-106 149-249 (256)
167 PRK10606 btuE putative glutath 98.4 2E-06 4.3E-11 66.4 8.0 43 17-60 24-66 (183)
168 PF01216 Calsequestrin: Calseq 98.4 2.6E-06 5.6E-11 70.5 8.7 106 2-107 35-146 (383)
169 PRK12759 bifunctional gluaredo 98.3 6.8E-07 1.5E-11 77.4 5.3 58 148-207 27-92 (410)
170 PRK10382 alkyl hydroperoxide r 98.3 4E-06 8.8E-11 65.0 8.7 88 17-104 30-155 (187)
171 PF13848 Thioredoxin_6: Thiore 98.3 1E-05 2.2E-10 61.9 10.9 100 3-103 79-184 (184)
172 PRK13703 conjugal pilus assemb 98.3 6.2E-06 1.3E-10 66.4 9.5 88 18-106 143-242 (248)
173 PRK13190 putative peroxiredoxi 98.3 4.5E-06 9.7E-11 65.6 8.3 89 17-105 26-154 (202)
174 cd02968 SCO SCO (an acronym fo 98.3 2.9E-06 6.2E-11 62.4 6.7 44 17-60 21-68 (142)
175 PRK15000 peroxidase; Provision 98.3 5.9E-06 1.3E-10 64.8 8.4 88 17-104 33-161 (200)
176 KOG3425|consensus 98.2 6.3E-06 1.4E-10 58.0 7.4 67 15-82 22-104 (128)
177 PF00462 Glutaredoxin: Glutare 98.2 4.2E-06 9E-11 52.4 5.9 54 22-84 1-58 (60)
178 cd02991 UAS_ETEA UAS family, E 98.2 8.3E-06 1.8E-10 58.3 7.4 88 16-105 15-113 (116)
179 PRK10877 protein disulfide iso 98.2 9.6E-06 2.1E-10 65.0 8.6 81 16-104 105-230 (232)
180 TIGR02194 GlrX_NrdH Glutaredox 98.2 7.6E-06 1.6E-10 53.3 6.4 66 23-99 2-70 (72)
181 KOG0911|consensus 98.2 1.9E-06 4.2E-11 67.2 3.9 74 70-157 135-212 (227)
182 cd02983 P5_C P5 family, C-term 98.2 8.3E-05 1.8E-09 54.2 12.1 104 2-106 3-116 (130)
183 cd03006 PDI_a_EFP1_N PDIa fami 98.1 5.6E-07 1.2E-11 64.1 0.3 67 115-182 11-95 (113)
184 PRK10329 glutaredoxin-like pro 98.1 2.5E-05 5.3E-10 52.2 8.2 72 22-105 3-77 (81)
185 cd03419 GRX_GRXh_1_2_like Glut 98.1 9.8E-06 2.1E-10 53.8 5.6 58 22-86 2-64 (82)
186 PF00462 Glutaredoxin: Glutare 98.1 5.6E-06 1.2E-10 51.8 4.0 37 148-184 24-60 (60)
187 PRK15317 alkyl hydroperoxide r 98.1 1.9E-05 4E-10 70.6 8.8 81 18-104 116-197 (517)
188 KOG3171|consensus 98.1 2.6E-05 5.7E-10 60.4 8.2 85 3-90 140-228 (273)
189 PRK13189 peroxiredoxin; Provis 98.0 2.3E-05 5.1E-10 62.4 7.9 88 17-104 34-162 (222)
190 PTZ00137 2-Cys peroxiredoxin; 98.0 3.1E-05 6.8E-10 63.0 8.6 88 17-104 97-224 (261)
191 TIGR03143 AhpF_homolog putativ 98.0 2.3E-05 5E-10 70.6 8.6 78 18-101 475-554 (555)
192 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 0.00011 2.4E-09 52.1 10.3 101 3-106 1-109 (111)
193 PRK13599 putative peroxiredoxi 98.0 3E-05 6.4E-10 61.5 8.0 88 17-104 27-155 (215)
194 PF02966 DIM1: Mitosis protein 98.0 5.6E-05 1.2E-09 54.4 8.4 69 16-86 18-87 (133)
195 cd02981 PDI_b_family Protein D 98.0 0.00011 2.3E-09 50.4 9.8 92 4-103 2-96 (97)
196 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 3.6E-05 7.7E-10 60.1 7.8 75 17-100 76-196 (197)
197 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 0.00013 2.8E-09 51.7 9.7 97 5-104 3-110 (111)
198 cd03004 PDI_a_ERdj5_C PDIa fam 97.9 1.9E-06 4.1E-11 60.0 -0.3 63 117-181 5-83 (104)
199 cd03016 PRX_1cys Peroxiredoxin 97.9 4.6E-05 1E-09 59.8 7.5 85 20-104 28-153 (203)
200 TIGR02190 GlrX-dom Glutaredoxi 97.9 4.5E-05 9.8E-10 50.5 6.1 60 18-86 6-68 (79)
201 PTZ00253 tryparedoxin peroxida 97.9 6.7E-05 1.5E-09 58.7 8.0 71 17-87 35-141 (199)
202 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 2E-06 4.4E-11 59.6 -0.8 65 116-182 4-83 (101)
203 PRK13191 putative peroxiredoxi 97.9 7.9E-05 1.7E-09 59.1 8.0 88 17-104 32-160 (215)
204 cd03065 PDI_b_Calsequestrin_N 97.9 1.5E-05 3.2E-10 57.3 3.4 68 115-185 11-101 (120)
205 KOG2603|consensus 97.8 0.00018 4E-09 58.9 9.7 105 2-106 41-167 (331)
206 TIGR03140 AhpF alkyl hydropero 97.8 9.7E-05 2.1E-09 66.0 8.8 81 18-104 117-198 (515)
207 PF07449 HyaE: Hydrogenase-1 e 97.8 5.1E-05 1.1E-09 53.1 5.5 89 5-94 13-103 (107)
208 PRK11657 dsbG disulfide isomer 97.8 0.00021 4.6E-09 58.0 9.7 82 17-101 116-248 (251)
209 cd02066 GRX_family Glutaredoxi 97.8 9.7E-05 2.1E-09 47.1 6.2 56 22-86 2-61 (72)
210 cd03019 DsbA_DsbA DsbA family, 97.8 0.00013 2.8E-09 55.5 7.8 40 17-57 14-53 (178)
211 cd03029 GRX_hybridPRX5 Glutare 97.8 0.00016 3.4E-09 46.9 6.8 56 22-86 3-61 (72)
212 cd02965 HyaE HyaE family; HyaE 97.8 2.4E-05 5.3E-10 55.2 3.1 70 116-187 13-99 (111)
213 TIGR02181 GRX_bact Glutaredoxi 97.7 7.1E-05 1.5E-09 49.4 5.0 55 22-85 1-59 (79)
214 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0012 2.6E-08 47.1 11.3 101 3-105 6-119 (126)
215 KOG4277|consensus 97.7 9.7E-06 2.1E-10 66.0 0.8 57 128-187 42-119 (468)
216 PHA03050 glutaredoxin; Provisi 97.7 0.00015 3.3E-09 51.1 6.7 66 13-86 8-80 (108)
217 TIGR02196 GlrX_YruB Glutaredox 97.7 5.1E-05 1.1E-09 48.8 3.9 42 148-189 25-66 (74)
218 PF13462 Thioredoxin_4: Thiore 97.7 0.00044 9.6E-09 51.7 9.6 43 16-59 10-54 (162)
219 TIGR02189 GlrX-like_plant Glut 97.7 0.00011 2.3E-09 51.0 5.6 56 22-86 10-72 (99)
220 cd02994 PDI_a_TMX PDIa family, 97.7 1.9E-05 4.2E-10 54.6 1.8 63 116-182 4-82 (101)
221 PRK15317 alkyl hydroperoxide r 97.7 0.0005 1.1E-08 61.5 11.3 149 17-186 17-182 (517)
222 cd03418 GRX_GRXb_1_3_like Glut 97.7 0.00017 3.7E-09 46.9 6.0 55 22-85 2-61 (75)
223 cd02954 DIM1 Dim1 family; Dim1 97.6 2.1E-05 4.6E-10 55.9 1.4 52 132-185 16-82 (114)
224 cd02972 DsbA_family DsbA famil 97.6 0.00032 7E-09 47.3 6.9 59 22-81 1-91 (98)
225 PF05768 DUF836: Glutaredoxin- 97.6 0.00033 7.2E-09 46.6 6.8 77 22-102 2-81 (81)
226 cd03027 GRX_DEP Glutaredoxin ( 97.6 0.00026 5.6E-09 46.0 6.1 56 22-86 3-62 (73)
227 cd02996 PDI_a_ERp44 PDIa famil 97.6 1.6E-05 3.5E-10 55.8 0.0 65 116-182 4-89 (108)
228 KOG0910|consensus 97.6 8.3E-06 1.8E-10 60.1 -1.7 70 118-189 48-137 (150)
229 TIGR02194 GlrX_NrdH Glutaredox 97.5 0.00011 2.4E-09 47.7 3.7 40 148-188 24-64 (72)
230 TIGR03140 AhpF alkyl hydropero 97.5 0.0011 2.4E-08 59.3 11.2 149 18-186 18-183 (515)
231 PF13848 Thioredoxin_6: Thiore 97.5 0.0014 3.1E-08 49.9 10.3 131 35-178 7-156 (184)
232 PF11009 DUF2847: Protein of u 97.5 0.00055 1.2E-08 47.7 6.9 86 4-90 2-95 (105)
233 PHA02278 thioredoxin-like prot 97.5 4.6E-05 1E-09 53.3 1.4 53 130-184 14-85 (103)
234 cd02962 TMX2 TMX2 family; comp 97.5 3.4E-05 7.5E-10 57.7 0.7 69 115-185 30-122 (152)
235 COG0695 GrxC Glutaredoxin and 97.5 0.00043 9.3E-09 46.0 5.7 51 22-79 3-59 (80)
236 PTZ00443 Thioredoxin domain-co 97.4 4E-05 8.7E-10 61.0 0.6 82 114-197 31-138 (224)
237 PRK10954 periplasmic protein d 97.4 0.00061 1.3E-08 53.6 7.1 41 17-58 36-79 (207)
238 PF00085 Thioredoxin: Thioredo 97.3 8.3E-05 1.8E-09 51.1 0.8 66 117-184 3-84 (103)
239 PRK10638 glutaredoxin 3; Provi 97.2 0.0013 2.7E-08 43.9 6.0 56 22-86 4-63 (83)
240 TIGR00365 monothiol glutaredox 97.2 0.0016 3.4E-08 45.0 6.5 50 28-86 25-78 (97)
241 KOG0912|consensus 97.2 9.5E-05 2.1E-09 60.4 0.3 64 120-185 3-86 (375)
242 cd03028 GRX_PICOT_like Glutare 97.2 0.0012 2.7E-08 44.8 5.6 49 28-85 21-73 (90)
243 KOG3170|consensus 97.1 0.0024 5.2E-08 49.3 7.4 97 3-104 93-200 (240)
244 cd02956 ybbN ybbN protein fami 97.1 0.00015 3.3E-09 49.5 0.9 53 130-184 12-79 (96)
245 cd02963 TRX_DnaJ TRX domain, D 97.1 0.00019 4.1E-09 50.7 1.2 53 130-184 24-92 (111)
246 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0049 1.1E-07 42.3 7.8 97 5-103 5-110 (112)
247 cd03002 PDI_a_MPD1_like PDI fa 97.1 0.00016 3.5E-09 50.5 0.6 64 117-182 4-85 (109)
248 COG3118 Thioredoxin domain-con 97.1 9.8E-05 2.1E-09 60.3 -0.6 69 116-186 26-112 (304)
249 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.00056 1.2E-08 43.7 2.8 42 148-189 25-66 (73)
250 cd02957 Phd_like Phosducin (Ph 97.0 0.00014 3E-09 51.6 -0.3 58 131-191 25-96 (113)
251 cd03005 PDI_a_ERp46 PDIa famil 97.0 0.00019 4.2E-09 49.4 0.1 64 117-183 4-85 (102)
252 cd02973 TRX_GRX_like Thioredox 97.0 0.00089 1.9E-08 42.5 3.1 35 148-186 31-65 (67)
253 PRK09381 trxA thioredoxin; Pro 97.0 0.00029 6.3E-09 49.3 0.9 67 117-185 7-89 (109)
254 cd03001 PDI_a_P5 PDIa family, 97.0 0.00019 4.2E-09 49.4 -0.0 61 119-181 6-82 (103)
255 PTZ00051 thioredoxin; Provisio 96.9 0.00014 3E-09 49.9 -0.9 56 130-187 18-87 (98)
256 PRK10329 glutaredoxin-like pro 96.9 0.0025 5.4E-08 42.4 5.0 40 148-188 26-65 (81)
257 cd03023 DsbA_Com1_like DsbA fa 96.9 0.0034 7.3E-08 46.2 6.1 40 17-58 4-43 (154)
258 KOG0907|consensus 96.8 0.00052 1.1E-08 48.2 1.3 55 131-187 22-94 (106)
259 cd02985 TRX_CDSP32 TRX family, 96.8 0.00053 1.1E-08 47.7 1.3 52 131-184 16-84 (103)
260 PRK10996 thioredoxin 2; Provis 96.8 0.00036 7.8E-09 51.4 0.4 53 130-184 52-119 (139)
261 cd02989 Phd_like_TxnDC9 Phosdu 96.8 0.00055 1.2E-08 48.6 1.1 52 132-185 24-89 (113)
262 TIGR01126 pdi_dom protein disu 96.8 0.00068 1.5E-08 46.4 1.5 56 129-186 12-88 (102)
263 cd02948 TRX_NDPK TRX domain, T 96.7 0.00036 7.9E-09 48.4 -0.1 51 130-183 17-83 (102)
264 cd02997 PDI_a_PDIR PDIa family 96.5 0.00064 1.4E-08 46.8 0.1 65 118-184 5-88 (104)
265 PRK12759 bifunctional gluaredo 96.5 0.0064 1.4E-07 52.9 6.2 61 22-94 4-76 (410)
266 PRK10824 glutaredoxin-4; Provi 96.5 0.0076 1.6E-07 42.9 5.2 50 28-86 28-81 (115)
267 cd03066 PDI_b_Calsequestrin_mi 96.4 0.089 1.9E-06 36.4 10.5 95 2-104 1-100 (102)
268 KOG1752|consensus 96.3 0.019 4E-07 40.1 6.5 58 22-86 16-78 (104)
269 cd02992 PDI_a_QSOX PDIa family 96.3 0.0006 1.3E-08 48.4 -1.0 64 117-182 5-89 (114)
270 cd02993 PDI_a_APS_reductase PD 96.2 0.00099 2.1E-08 46.8 -0.5 65 116-181 4-88 (109)
271 cd03069 PDI_b_ERp57 PDIb famil 96.2 0.083 1.8E-06 36.7 9.2 93 3-104 2-103 (104)
272 cd02984 TRX_PICOT TRX domain, 96.2 0.0014 3E-08 44.7 0.1 52 131-184 15-81 (97)
273 TIGR00424 APS_reduc 5'-adenyly 96.1 0.0015 3.2E-08 57.4 0.2 66 115-182 353-439 (463)
274 cd02999 PDI_a_ERp44_like PDIa 96.1 0.0018 3.9E-08 44.9 0.6 50 130-181 18-82 (100)
275 COG1225 Bcp Peroxiredoxin [Pos 96.1 0.045 9.9E-07 41.0 8.1 58 16-73 28-107 (157)
276 cd02995 PDI_a_PDI_a'_C PDIa fa 96.1 0.0012 2.7E-08 45.3 -0.3 63 117-182 4-84 (104)
277 cd03000 PDI_a_TMX3 PDIa family 96.1 0.0033 7.2E-08 43.6 1.8 52 121-174 7-76 (104)
278 PTZ00062 glutaredoxin; Provisi 96.1 0.021 4.4E-07 44.9 6.3 51 27-86 125-179 (204)
279 cd02998 PDI_a_ERp38 PDIa famil 96.0 0.0022 4.8E-08 44.0 0.5 61 119-181 6-85 (105)
280 cd02986 DLP Dim1 family, Dim1- 96.0 0.0027 5.9E-08 45.0 0.9 52 131-184 15-81 (114)
281 TIGR02200 GlrX_actino Glutared 96.0 0.0073 1.6E-07 39.0 2.9 41 148-188 25-67 (77)
282 TIGR01068 thioredoxin thioredo 96.0 0.0041 8.9E-08 42.3 1.7 51 132-184 16-81 (101)
283 KOG4023|consensus 95.8 0.011 2.3E-07 40.4 3.1 62 148-209 33-102 (108)
284 cd02978 KaiB_like KaiB-like fa 95.7 0.065 1.4E-06 34.7 6.4 58 21-78 3-60 (72)
285 cd02987 Phd_like_Phd Phosducin 95.7 0.0036 7.7E-08 48.0 0.7 51 132-185 85-149 (175)
286 PLN02309 5'-adenylylsulfate re 95.7 0.0021 4.6E-08 56.4 -0.9 67 115-182 347-433 (457)
287 cd02949 TRX_NTR TRX domain, no 95.3 0.0062 1.3E-07 41.7 0.7 53 130-184 13-80 (97)
288 TIGR00411 redox_disulf_1 small 95.2 0.027 5.8E-07 36.8 3.6 31 148-182 32-62 (82)
289 KOG2640|consensus 95.2 0.0072 1.6E-07 49.7 0.8 89 16-106 74-163 (319)
290 PLN00410 U5 snRNP protein, DIM 95.2 0.0099 2.1E-07 43.9 1.4 50 132-182 25-89 (142)
291 cd02974 AhpF_NTD_N Alkyl hydro 94.9 0.48 1E-05 32.4 9.2 73 18-104 19-93 (94)
292 cd02947 TRX_family TRX family; 94.6 0.033 7.3E-07 36.5 2.8 49 132-182 12-74 (93)
293 cd02975 PfPDO_like_N Pyrococcu 94.6 0.026 5.7E-07 39.9 2.4 43 133-179 25-81 (113)
294 KOG0914|consensus 94.5 0.017 3.6E-07 45.4 1.1 57 128-188 142-217 (265)
295 COG1331 Highly conserved prote 94.5 0.093 2E-06 47.8 5.9 76 10-86 35-122 (667)
296 PRK09301 circadian clock prote 94.5 0.19 4.1E-06 34.8 6.2 75 18-93 5-79 (103)
297 PRK11509 hydrogenase-1 operon 94.4 0.048 1E-06 39.8 3.3 38 148-187 70-107 (132)
298 TIGR02654 circ_KaiB circadian 94.2 0.25 5.5E-06 33.2 6.1 72 20-92 4-75 (87)
299 cd03013 PRX5_like Peroxiredoxi 94.0 0.13 2.8E-06 38.5 5.1 54 18-71 30-88 (155)
300 cd03031 GRX_GRX_like Glutaredo 94.0 0.21 4.6E-06 37.1 6.2 56 22-86 2-71 (147)
301 TIGR00412 redox_disulf_2 small 93.7 0.08 1.7E-06 34.5 3.0 44 135-183 3-59 (76)
302 cd02950 TxlA TRX-like protein 93.6 0.024 5.2E-07 41.8 0.5 53 130-184 20-90 (142)
303 cd03026 AhpF_NTD_C TRX-GRX-lik 93.5 0.084 1.8E-06 35.7 3.0 34 148-185 44-77 (89)
304 KOG1731|consensus 93.5 0.011 2.4E-07 52.4 -1.7 73 115-188 41-140 (606)
305 cd03040 GST_N_mPGES2 GST_N fam 93.3 0.29 6.2E-06 31.6 5.3 73 22-105 2-76 (77)
306 cd03068 PDI_b_ERp72 PDIb famil 93.1 1.7 3.7E-05 30.3 9.2 94 2-103 1-106 (107)
307 cd03037 GST_N_GRX2 GST_N famil 92.9 0.27 5.8E-06 31.2 4.5 50 24-78 3-52 (71)
308 PHA02125 thioredoxin-like prot 92.7 0.048 1E-06 35.5 0.8 45 135-184 3-56 (75)
309 KOG0908|consensus 92.6 0.042 9.2E-07 44.0 0.6 50 133-184 24-87 (288)
310 cd02988 Phd_like_VIAF Phosduci 92.6 0.036 7.8E-07 43.1 0.1 66 115-185 84-166 (192)
311 cd03041 GST_N_2GST_N GST_N fam 92.5 0.88 1.9E-05 29.4 6.7 69 23-103 3-75 (77)
312 cd03060 GST_N_Omega_like GST_N 92.4 0.47 1E-05 30.1 5.3 51 23-78 2-53 (71)
313 PHA03075 glutaredoxin-like pro 92.3 0.28 6.1E-06 34.6 4.3 36 19-59 2-37 (123)
314 PF07689 KaiB: KaiB domain; I 92.1 0.11 2.3E-06 34.7 1.9 54 25-78 3-56 (82)
315 TIGR01295 PedC_BrcD bacterioci 92.1 0.051 1.1E-06 39.0 0.3 54 133-187 26-106 (122)
316 cd02953 DsbDgamma DsbD gamma f 92.0 0.05 1.1E-06 37.5 0.3 49 131-179 12-78 (104)
317 cd02961 PDI_a_family Protein D 91.6 0.037 8E-07 37.1 -0.8 42 132-174 17-75 (101)
318 cd02977 ArsC_family Arsenate R 91.2 0.23 5E-06 34.4 2.9 32 23-61 2-33 (105)
319 PF00837 T4_deiodinase: Iodoth 91.0 0.32 6.9E-06 38.9 3.8 59 2-61 83-144 (237)
320 PF13417 GST_N_3: Glutathione 90.9 1.5 3.3E-05 28.0 6.5 69 25-105 2-71 (75)
321 cd02952 TRP14_like Human TRX-r 90.5 0.06 1.3E-06 38.5 -0.5 56 131-188 22-107 (119)
322 cd03051 GST_N_GTT2_like GST_N 88.9 1.4 3E-05 27.7 5.0 52 23-79 2-57 (74)
323 cd00570 GST_N_family Glutathio 88.8 1 2.2E-05 27.4 4.3 51 24-79 3-55 (71)
324 PRK01655 spxA transcriptional 88.0 0.89 1.9E-05 33.0 4.1 35 22-63 2-36 (131)
325 cd03036 ArsC_like Arsenate Red 87.5 0.78 1.7E-05 32.2 3.4 33 23-62 2-34 (111)
326 TIGR01617 arsC_related transcr 87.4 1 2.2E-05 31.9 3.9 34 23-63 2-35 (117)
327 cd03035 ArsC_Yffb Arsenate Red 86.4 1 2.2E-05 31.4 3.4 33 23-62 2-34 (105)
328 KOG2507|consensus 85.9 5.8 0.00013 34.5 8.2 90 16-105 16-111 (506)
329 cd00570 GST_N_family Glutathio 85.7 1.6 3.4E-05 26.6 3.8 45 148-192 24-68 (71)
330 cd03059 GST_N_SspA GST_N famil 85.6 2 4.4E-05 27.0 4.4 51 23-78 2-53 (73)
331 cd03045 GST_N_Delta_Epsilon GS 84.9 2.4 5.2E-05 26.7 4.5 51 23-78 2-56 (74)
332 COG3019 Predicted metal-bindin 84.8 2.4 5.1E-05 31.1 4.7 75 18-104 24-103 (149)
333 KOG0913|consensus 84.6 0.27 5.8E-06 39.2 -0.2 52 133-188 42-114 (248)
334 PF01323 DSBA: DSBA-like thior 84.6 1.3 2.8E-05 33.7 3.6 34 22-55 2-35 (193)
335 PF06053 DUF929: Domain of unk 84.0 4 8.6E-05 33.1 6.2 58 15-81 55-113 (249)
336 PF13743 Thioredoxin_5: Thiore 83.2 3 6.5E-05 31.8 5.1 33 24-57 2-34 (176)
337 PF06764 DUF1223: Protein of u 82.9 7.7 0.00017 30.4 7.3 80 22-106 2-99 (202)
338 cd03032 ArsC_Spx Arsenate Redu 82.9 3 6.5E-05 29.4 4.7 33 23-62 3-35 (115)
339 PRK12559 transcriptional regul 82.4 2.1 4.5E-05 31.1 3.8 33 22-61 2-34 (131)
340 cd02959 ERp19 Endoplasmic reti 81.9 0.35 7.6E-06 34.3 -0.5 53 130-185 19-91 (117)
341 PF09822 ABC_transp_aux: ABC-t 81.7 25 0.00053 28.6 10.3 57 16-73 22-88 (271)
342 cd03055 GST_N_Omega GST_N fami 81.6 5.5 0.00012 26.4 5.4 53 22-79 19-72 (89)
343 COG4545 Glutaredoxin-related p 81.4 2.8 6.2E-05 27.3 3.6 56 23-86 5-76 (85)
344 TIGR02742 TrbC_Ftype type-F co 81.3 2.7 5.8E-05 30.6 3.9 24 61-84 59-82 (130)
345 PF09673 TrbC_Ftype: Type-F co 80.9 4.5 9.9E-05 28.5 4.9 44 35-82 36-80 (113)
346 COG2761 FrnE Predicted dithiol 80.6 3 6.4E-05 33.2 4.3 39 64-106 175-214 (225)
347 COG0386 BtuE Glutathione perox 80.0 22 0.00048 26.7 8.3 44 16-60 23-66 (162)
348 cd02982 PDI_b'_family Protein 79.7 0.41 8.9E-06 32.5 -0.8 47 132-180 14-77 (103)
349 COG3634 AhpF Alkyl hydroperoxi 79.6 8 0.00017 33.2 6.6 81 17-103 115-196 (520)
350 PF00255 GSHPx: Glutathione pe 78.8 10 0.00022 26.5 6.1 80 17-101 20-107 (108)
351 COG1651 DsbG Protein-disulfide 77.7 6.2 0.00013 31.4 5.4 30 19-48 85-114 (244)
352 COG3531 Predicted protein-disu 77.6 3.6 7.8E-05 32.0 3.7 43 63-105 164-209 (212)
353 PF02630 SCO1-SenC: SCO1/SenC; 76.7 8 0.00017 29.4 5.5 53 17-69 51-109 (174)
354 cd02951 SoxW SoxW family; SoxW 76.6 4.5 9.6E-05 28.6 3.9 11 131-141 15-25 (125)
355 cd03041 GST_N_2GST_N GST_N fam 76.6 14 0.0003 23.7 5.9 47 148-194 25-73 (77)
356 PF04592 SelP_N: Selenoprotein 76.4 4.6 0.0001 32.3 4.2 45 16-60 24-71 (238)
357 PRK13344 spxA transcriptional 76.1 5.1 0.00011 29.1 4.1 34 22-62 2-35 (132)
358 cd02955 SSP411 TRX domain, SSP 74.8 1 2.2E-05 32.5 0.1 35 150-184 53-94 (124)
359 cd02990 UAS_FAF1 UAS family, F 74.0 32 0.00069 25.2 8.6 89 16-105 19-133 (136)
360 COG1999 Uncharacterized protei 72.8 24 0.00053 27.7 7.5 62 17-78 66-135 (207)
361 cd02967 mauD Methylamine utili 72.6 8.8 0.00019 26.3 4.6 44 38-86 65-109 (114)
362 PF13743 Thioredoxin_5: Thiore 71.4 2.9 6.3E-05 31.9 1.9 20 62-81 136-155 (176)
363 PF01323 DSBA: DSBA-like thior 71.3 14 0.00031 27.9 5.8 27 169-195 163-190 (193)
364 KOG2792|consensus 70.8 16 0.00036 29.7 6.0 90 17-106 138-276 (280)
365 cd03037 GST_N_GRX2 GST_N famil 69.7 20 0.00042 22.3 5.4 45 148-194 24-69 (71)
366 PF04134 DUF393: Protein of un 68.9 8.8 0.00019 26.6 3.9 57 25-84 2-61 (114)
367 cd03056 GST_N_4 GST_N family, 68.8 16 0.00034 22.6 4.8 51 24-79 3-57 (73)
368 cd03074 PDI_b'_Calsequestrin_C 67.5 40 0.00088 23.7 9.0 89 17-105 19-120 (120)
369 cd03025 DsbA_FrnE_like DsbA fa 67.0 8.7 0.00019 29.2 3.8 27 22-48 3-29 (193)
370 COG5429 Uncharacterized secret 64.7 30 0.00064 27.9 6.3 82 19-105 42-141 (261)
371 COG4232 Thiol:disulfide interc 64.3 4.4 9.6E-05 36.7 1.8 43 132-174 476-538 (569)
372 PRK00293 dipZ thiol:disulfide 64.2 4.1 9E-05 37.2 1.7 51 132-183 476-547 (571)
373 PF13462 Thioredoxin_4: Thiore 62.8 8.5 0.00019 28.1 3.0 26 168-193 131-156 (162)
374 cd03024 DsbA_FrnE DsbA family, 60.8 8.7 0.00019 29.4 2.8 36 62-101 164-200 (201)
375 PF01216 Calsequestrin: Calseq 60.3 1.1E+02 0.0024 26.3 9.5 96 2-106 147-248 (383)
376 cd03052 GST_N_GDAP1 GST_N fami 59.8 26 0.00057 22.2 4.5 55 23-84 2-60 (73)
377 cd03061 GST_N_CLIC GST_N famil 57.5 42 0.00092 22.6 5.4 67 27-105 19-86 (91)
378 cd03033 ArsC_15kD Arsenate Red 56.4 16 0.00036 25.6 3.3 22 22-43 2-23 (113)
379 cd03025 DsbA_FrnE_like DsbA fa 56.3 9.3 0.0002 29.0 2.3 23 62-84 158-180 (193)
380 PF13417 GST_N_3: Glutathione 56.2 23 0.00049 22.4 3.8 45 148-193 22-66 (75)
381 COG1651 DsbG Protein-disulfide 55.3 14 0.00031 29.4 3.2 38 62-104 204-242 (244)
382 KOG3029|consensus 55.0 9.8 0.00021 31.4 2.2 53 130-193 104-157 (370)
383 cd03058 GST_N_Tau GST_N family 53.5 53 0.0011 20.4 5.7 50 24-78 3-54 (74)
384 PRK13730 conjugal transfer pil 53.4 26 0.00057 27.5 4.2 31 62-93 151-181 (212)
385 COG0450 AhpC Peroxiredoxin [Po 53.0 73 0.0016 24.8 6.6 86 19-104 34-160 (194)
386 cd03053 GST_N_Phi GST_N family 50.9 53 0.0012 20.4 4.9 51 23-78 3-57 (76)
387 cd03030 GRX_SH3BGR Glutaredoxi 50.6 47 0.001 22.4 4.7 59 24-84 3-69 (92)
388 TIGR00014 arsC arsenate reduct 50.1 23 0.00051 24.8 3.3 20 23-42 2-21 (114)
389 cd03034 ArsC_ArsC Arsenate Red 48.3 26 0.00057 24.4 3.3 21 23-43 2-22 (112)
390 PF07315 DUF1462: Protein of u 47.9 45 0.00099 22.5 4.1 39 148-186 38-80 (93)
391 cd03023 DsbA_Com1_like DsbA fa 47.8 19 0.00041 25.8 2.7 26 169-194 125-150 (154)
392 cd03049 GST_N_3 GST_N family, 45.8 71 0.0015 19.7 5.1 52 24-78 3-55 (73)
393 PRK10387 glutaredoxin 2; Provi 44.2 72 0.0016 24.3 5.6 70 24-104 3-72 (210)
394 COG1393 ArsC Arsenate reductas 41.3 37 0.00081 24.1 3.2 22 22-43 3-24 (117)
395 PF06491 Disulph_isomer: Disul 40.0 26 0.00057 25.4 2.2 99 3-105 18-132 (136)
396 PF06953 ArsD: Arsenical resis 39.5 50 0.0011 23.7 3.6 54 51-106 40-103 (123)
397 cd07973 Spt4 Transcription elo 39.2 20 0.00044 24.7 1.5 69 24-103 17-93 (98)
398 KOG1364|consensus 38.3 60 0.0013 27.7 4.4 56 51-106 132-190 (356)
399 cd03054 GST_N_Metaxin GST_N fa 37.2 93 0.002 19.2 4.4 40 148-195 31-70 (72)
400 PF03960 ArsC: ArsC family; I 37.1 62 0.0014 22.3 3.8 31 25-62 1-31 (110)
401 PF08806 Sep15_SelM: Sep15/Sel 36.9 47 0.001 21.7 2.9 33 73-105 41-76 (78)
402 PF00403 HMA: Heavy-metal-asso 35.0 1E+02 0.0022 18.4 4.2 32 26-62 5-36 (62)
403 COG3011 Predicted thiol-disulf 34.9 1.8E+02 0.004 21.3 6.6 66 17-85 5-72 (137)
404 PF04566 RNA_pol_Rpb2_4: RNA p 34.8 21 0.00045 22.4 0.9 26 177-202 1-33 (63)
405 KOG0868|consensus 34.0 76 0.0016 24.6 4.0 58 150-207 33-92 (217)
406 KOG1651|consensus 33.1 2.1E+02 0.0046 21.8 6.2 81 17-105 33-125 (171)
407 TIGR02182 GRXB Glutaredoxin, G 32.5 1.3E+02 0.0028 23.2 5.4 69 25-104 3-71 (209)
408 KOG3171|consensus 32.5 27 0.00058 27.8 1.4 39 168-207 209-251 (273)
409 PF11287 DUF3088: Protein of u 30.9 72 0.0016 22.5 3.2 51 29-81 23-76 (112)
410 cd03044 GST_N_EF1Bgamma GST_N 30.2 1.3E+02 0.0029 18.7 4.3 51 24-79 3-56 (75)
411 cd03021 DsbA_GSTK DsbA family, 30.2 67 0.0015 24.9 3.4 31 64-95 170-201 (209)
412 PF13364 BetaGal_dom4_5: Beta- 30.1 36 0.00078 23.7 1.7 17 172-188 62-78 (111)
413 TIGR02652 conserved hypothetic 29.9 18 0.00039 26.5 0.1 12 29-40 11-22 (163)
414 PF09654 DUF2396: Protein of u 29.7 18 0.00039 26.5 0.0 12 29-40 8-19 (161)
415 PF11072 DUF2859: Protein of u 28.8 81 0.0018 23.3 3.3 17 62-78 120-136 (142)
416 COG3411 Ferredoxin [Energy pro 28.7 1.1E+02 0.0023 19.3 3.4 35 73-112 16-50 (64)
417 PF07700 HNOB: Heme NO binding 28.4 1.5E+02 0.0032 22.3 4.9 44 17-60 126-169 (171)
418 PRK10853 putative reductase; P 28.4 73 0.0016 22.5 3.0 22 22-43 2-23 (118)
419 TIGR01616 nitro_assoc nitrogen 27.2 97 0.0021 22.2 3.5 22 22-43 3-24 (126)
420 PRK09481 sspA stringent starva 27.0 1.5E+02 0.0032 22.9 4.8 73 21-105 10-83 (211)
421 PF07351 DUF1480: Protein of u 26.8 39 0.00085 22.0 1.2 36 148-184 26-61 (80)
422 TIGR03765 ICE_PFL_4695 integra 26.6 82 0.0018 22.0 2.8 17 62-78 82-98 (105)
423 PRK10026 arsenate reductase; P 26.3 93 0.002 22.9 3.3 22 22-43 4-25 (141)
424 COG2077 Tpx Peroxiredoxin [Pos 26.1 1.9E+02 0.004 21.7 4.8 66 16-83 43-111 (158)
425 PF04900 Fcf1: Fcf1; InterPro 25.0 1E+02 0.0022 20.8 3.2 28 152-182 67-94 (101)
426 KOG0852|consensus 24.5 1.3E+02 0.0029 23.2 3.8 56 17-72 32-116 (196)
427 cd03042 GST_N_Zeta GST_N famil 24.4 1.2E+02 0.0026 18.4 3.2 30 163-192 41-70 (73)
428 COG3634 AhpF Alkyl hydroperoxi 24.4 4.8E+02 0.01 22.8 8.2 81 18-112 18-100 (520)
429 PF14237 DUF4339: Domain of un 23.5 1.2E+02 0.0026 17.2 2.8 25 177-201 4-30 (45)
430 PF11399 DUF3192: Protein of u 23.3 57 0.0012 22.6 1.6 16 173-188 81-96 (102)
431 TIGR02743 TraW type-F conjugat 22.9 80 0.0017 24.8 2.5 24 60-84 172-195 (202)
432 PF04551 GcpE: GcpE protein; 22.3 46 0.00099 28.5 1.1 76 29-104 270-358 (359)
433 cd03022 DsbA_HCCA_Iso DsbA fam 21.9 1.2E+02 0.0026 22.7 3.4 34 162-195 156-189 (192)
434 KOG1422|consensus 21.7 4.2E+02 0.009 21.1 6.6 66 29-106 20-86 (221)
435 PF04908 SH3BGR: SH3-binding, 21.6 1.3E+02 0.0027 20.7 3.1 44 23-66 3-46 (99)
436 cd03078 GST_N_Metaxin1_like GS 21.5 1.3E+02 0.0027 19.1 2.9 23 173-195 48-70 (73)
437 PF11008 DUF2846: Protein of u 21.5 65 0.0014 22.5 1.7 14 173-186 41-54 (117)
438 COG0821 gcpE 1-hydroxy-2-methy 21.4 85 0.0019 26.7 2.5 78 29-106 263-352 (361)
439 PF08599 Nbs1_C: DNA damage re 21.4 40 0.00086 21.1 0.5 22 183-204 21-43 (65)
440 KOG0324|consensus 21.3 90 0.002 24.7 2.5 51 25-76 80-131 (214)
441 PF08308 PEGA: PEGA domain; I 21.3 63 0.0014 20.1 1.4 10 176-185 14-23 (71)
442 cd03050 GST_N_Theta GST_N fami 20.6 2.2E+02 0.0048 17.5 4.9 50 24-78 3-56 (76)
443 PRK10877 protein disulfide iso 20.5 1.3E+02 0.0028 24.0 3.4 27 169-195 198-228 (232)
444 PF13778 DUF4174: Domain of un 20.2 3.2E+02 0.0069 19.2 9.0 83 22-104 13-111 (118)
445 cd03046 GST_N_GTT1_like GST_N 20.2 1.8E+02 0.0039 17.8 3.5 31 163-193 40-70 (76)
446 cd03039 GST_N_Sigma_like GST_N 20.2 2.2E+02 0.0048 17.3 4.4 45 148-192 24-68 (72)
No 1
>PTZ00062 glutaredoxin; Provisional
Probab=100.00 E-value=3.7e-38 Score=245.30 Aligned_cols=171 Identities=28% Similarity=0.429 Sum_probs=141.3
Q ss_pred chhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246 9 ELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD 87 (213)
Q Consensus 9 ~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~ 87 (213)
+.....+++ .+.++++|+|+||++|+++.|.+.+++++++ ++.|+.||++ |+|.++|||++|++|+.+.
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 334444444 4889999999999999999999999999998 7999999987 9999999999999999999
Q ss_pred cccCCCchhHHHHHHHHhcc----------------------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCC
Q psy15246 88 RVEGADPESLDKKLQNQAST----------------------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYP 145 (213)
Q Consensus 88 ~~~g~~~~~l~~~i~~~~~~----------------------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~ 145 (213)
++.|.++.+|..+++++.+. +||+|.. +.|++.. .++.+|....
T Consensus 77 r~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~-p~C~~C~-------~~k~~L~~~~------ 142 (204)
T PTZ00062 77 SLEGCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTF-PFCRFSN-------AVVNMLNSSG------ 142 (204)
T ss_pred eeeCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCC-CCChhHH-------HHHHHHHHcC------
Confidence 99999988999888887542 4444332 2333333 1112222221
Q ss_pred CCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246 146 QVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205 (213)
Q Consensus 146 ~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~ 205 (213)
++|..+|+..+++.++.|+++++|||+|||||+|++|||+|++++|+++|+|.++|..
T Consensus 143 --i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 143 --VKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred --CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999854
No 2
>KOG0911|consensus
Probab=100.00 E-value=3.7e-36 Score=231.03 Aligned_cols=186 Identities=38% Similarity=0.616 Sum_probs=152.6
Q ss_pred CceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 1 M~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
|+|+++.....+ ...+.+..+++||++||..|+++...++.+++..+ ++.|+++++++.++++..+.+.+.|++.++
T Consensus 1 ~~v~~i~~~~~f-~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 1 MTVQFIVFQEQF-LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEFPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred CCceeehhHHHH-HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence 788999885555 55689999999999999999999999999999996 899999999999999999999999999999
Q ss_pred eCCCCcccccCCCchhHHHHHHHHhcc----------------------------------------CCCCCCcccccCC
Q psy15246 81 KNLKPVDRVEGADPESLDKKLQNQAST----------------------------------------MKNQPSNITHVPY 120 (213)
Q Consensus 81 ~~g~~~~~~~g~~~~~l~~~i~~~~~~----------------------------------------~kg~p~~~~~~~~ 120 (213)
..|+.+.+..|.++..+...+...... |||+|+. +.|.|
T Consensus 78 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~-P~CGF 156 (227)
T KOG0911|consen 78 FLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEE-PKCGF 156 (227)
T ss_pred ecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCc-ccccc
Confidence 999888888877766444444433221 4555544 34444
Q ss_pred CcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCch
Q psy15246 121 DTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLI 200 (213)
Q Consensus 121 ~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~ 200 (213)
+. .+...|...+ ++|+.+|+..|+++|+++|.||.||||||+||+|+|+||+|+++++|++|+|.
T Consensus 157 S~-------~~v~iL~~~n--------V~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~geL~ 221 (227)
T KOG0911|consen 157 SR-------QLVGILQSHN--------VNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGELV 221 (227)
T ss_pred cH-------HHHHHHHHcC--------CCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcccHH
Confidence 33 1112222222 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccC
Q psy15246 201 PTLDQ 205 (213)
Q Consensus 201 ~~~~~ 205 (213)
..|+.
T Consensus 222 ~~l~~ 226 (227)
T KOG0911|consen 222 YTLKE 226 (227)
T ss_pred HHhhc
Confidence 98864
No 3
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-27 Score=158.34 Aligned_cols=95 Identities=37% Similarity=0.677 Sum_probs=80.5
Q ss_pred hHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhc
Q psy15246 96 SLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYS 169 (213)
Q Consensus 96 ~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~ 169 (213)
++.+.|++.+++ |||+|.. +.|.|+. .+.+.|..+.. ++|+++|+.+|+++|+++++|+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~-P~CGFS~-------~~vqiL~~~g~-------v~~~~vnVL~d~eiR~~lk~~s 67 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEF-PQCGFSA-------QAVQILSACGV-------VDFAYVDVLQDPEIRQGLKEYS 67 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCC-CCCCccH-------HHHHHHHHcCC-------cceeEEeeccCHHHHhccHhhc
Confidence 355667776665 9999997 7788877 33355554431 6899999999999999999999
Q ss_pred CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246 170 NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205 (213)
Q Consensus 170 ~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~ 205 (213)
+|||+||+||+|+||||+|+++++.++|+|.++|+.
T Consensus 68 ~WPT~PQLyi~GEfvGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 68 NWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred CCCCCceeeECCEEeccHHHHHHHHHcchHHHHHHh
Confidence 999999999999999999999999999999999865
No 4
>KOG0910|consensus
Probab=99.91 E-value=2e-24 Score=157.53 Aligned_cols=97 Identities=28% Similarity=0.516 Sum_probs=90.9
Q ss_pred chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246 9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR 88 (213)
Q Consensus 9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~ 88 (213)
+++..+++++.+|+|.|||+||++|+.+.|.+++++.++.+ .+.|++||.|++.+++.+|+|.++||+++|+||+...+
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~ 130 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDR 130 (150)
T ss_pred HHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEEEECCEEeee
Confidence 56667789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCCCch-hHHHHHHHHhc
Q psy15246 89 VEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 89 ~~g~~~~-~l~~~i~~~~~ 106 (213)
..|..+. .|.++|+++++
T Consensus 131 ~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 131 FVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ecccCCHHHHHHHHHHHhc
Confidence 9998777 69999998864
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=8.4e-24 Score=150.72 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=85.5
Q ss_pred ceEEeCCchhhhh---hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH-HhCCCccccEE
Q psy15246 2 SVVQISEELDVEK---YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS-LNYKVSAVPTF 77 (213)
Q Consensus 2 ~v~~l~~~~~~~~---~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~-~~~~I~~~Pti 77 (213)
.|++++++++.+. +.++++++|.||||||++|+.+.|.|+++++.+++ .+.|++|||+++.++| ++|+|.++||+
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 3788999666654 58999999999999999999999999999999987 6999999999999999 58999999999
Q ss_pred EEEeCCCCcccccCCCch-hHHHH
Q psy15246 78 VILKNLKPVDRVEGADPE-SLDKK 100 (213)
Q Consensus 78 ~~~~~g~~~~~~~g~~~~-~l~~~ 100 (213)
++|++|+...++.|.... .|..|
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhh
Confidence 999999876667776554 67665
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.90 E-value=3.6e-23 Score=145.00 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=87.0
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
+++++...+...+..+++++|.|||+||++|+++.|.|+++++.+++ .+.|++|||++++++|++++|+++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 67888876777778889999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred CCCcccccCCCch-hHHHH
Q psy15246 83 LKPVDRVEGADPE-SLDKK 100 (213)
Q Consensus 83 g~~~~~~~g~~~~-~l~~~ 100 (213)
|+...++.|.... +|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9888888886655 56655
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=7.6e-23 Score=143.10 Aligned_cols=101 Identities=32% Similarity=0.523 Sum_probs=92.4
Q ss_pred eEEeCCchhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 3 VVQISEELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 3 v~~l~~~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
|+.+|++.+...+.+ +++++|.||++||++|+.+.|.|+++++.+++ ++.|+.||++++++++++|+|.++||+++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 567888777777765 99999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCcccccCCCc-hhHHHHHHHH
Q psy15246 82 NLKPVDRVEGADP-ESLDKKLQNQ 104 (213)
Q Consensus 82 ~g~~~~~~~g~~~-~~l~~~i~~~ 104 (213)
+|+...++.|... ++|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 9998888999855 4899999875
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.89 E-value=1.7e-22 Score=142.26 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=85.6
Q ss_pred ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
.+++++.+.+.+. ..++++++|.|||+||++|+++.|.|+++++.+.+ .+.|++||+++++++|++|+|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 3678888555554 46678999999999999999999999999999986 799999999999999999999999999999
Q ss_pred eCC-CCcccccCCCc--hhHHHHH
Q psy15246 81 KNL-KPVDRVEGADP--ESLDKKL 101 (213)
Q Consensus 81 ~~g-~~~~~~~g~~~--~~l~~~i 101 (213)
++| +...++.|... ++|.+||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 988 88888888654 3677664
No 9
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.88 E-value=4.7e-22 Score=139.65 Aligned_cols=97 Identities=26% Similarity=0.397 Sum_probs=86.2
Q ss_pred eCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCC
Q psy15246 6 ISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 6 l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
+++ +.....++++++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ +.+++++|+|+++||+++|++|+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 444 5555667889999999999999999999999999999998535899999999 78999999999999999999999
Q ss_pred CcccccCCCchhHHHHHHH
Q psy15246 85 PVDRVEGADPESLDKKLQN 103 (213)
Q Consensus 85 ~~~~~~g~~~~~l~~~i~~ 103 (213)
.+.+..|.+...|.++|++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEEEecCChHHHHHHHhh
Confidence 9999999888788888865
No 10
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-22 Score=161.15 Aligned_cols=103 Identities=23% Similarity=0.517 Sum_probs=94.3
Q ss_pred eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
++++|+ ++..+++ +...+|+|+||+|||++|+++.|.+++++.+++| .+.+++||||+++.++.+|||+++||++.
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 567888 4555554 5566999999999999999999999999999999 99999999999999999999999999999
Q ss_pred EeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 80 LKNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
|++|+++..+.|..++ .|++|+.+++.
T Consensus 104 f~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 104 FKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred eeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 9999999999999999 79999999974
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=2.5e-22 Score=144.17 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=87.1
Q ss_pred eEEeCCchhhhh-hcCCCeEEEEEEcCCCHH--HH--hHHHHHHHHHHHc--CCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246 3 VVQISEELDVEK-YGKDKTAVVHFYADWSDE--CK--HMNTLFDEMSKQS--KYSQVVFARCIAEDLPKLSLNYKVSAVP 75 (213)
Q Consensus 3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~--C~--~~~~~~~~l~~~~--~~~~v~~~~vd~~~~~~l~~~~~I~~~P 75 (213)
|+++|++++.+. .+++.++++.||++||++ |+ .+.|.++++++++ .+ ++.|++||++++++++++|+|+++|
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHHHHHHcCCcccc
Confidence 678888555554 577778899999999976 99 8899999999887 65 7999999999999999999999999
Q ss_pred EEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246 76 TFVILKNLKPVDRVEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 76 ti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~ 105 (213)
|+++|++|+.+. +.|..+. .|.+||++.+
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 7776665 7999998864
No 12
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=5.4e-22 Score=140.68 Aligned_cols=100 Identities=18% Similarity=0.356 Sum_probs=84.9
Q ss_pred ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-----CcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-----SQVVFARCIAEDLPKLSLNYKVSAVPT 76 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-----~~v~~~~vd~~~~~~l~~~~~I~~~Pt 76 (213)
.|++++++.+.+.+..+++++|.|||+||++|+++.|.|+++++.+++ ..+.+++|||+++++++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 378888877777888899999999999999999999999999987532 158999999999999999999999999
Q ss_pred EEEEeCCCC-cccccCCCch-hHHHHH
Q psy15246 77 FVILKNLKP-VDRVEGADPE-SLDKKL 101 (213)
Q Consensus 77 i~~~~~g~~-~~~~~g~~~~-~l~~~i 101 (213)
+++|++|+. ...+.|.... +|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999983 4556675554 677764
No 13
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=4.6e-22 Score=140.90 Aligned_cols=77 Identities=18% Similarity=0.366 Sum_probs=71.9
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD 93 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~ 93 (213)
+++++++|.|||+||++|+.|.|.++++++++++ .+.|++||++++++++++|+|+++||+++|++|+.+.+..|.-
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~ 88 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTG 88 (114)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence 3688999999999999999999999999999996 6899999999999999999999999999999999998887743
No 14
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=5.7e-22 Score=139.06 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=77.6
Q ss_pred chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeCCC
Q psy15246 9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
+.+.+.++++++++|+|||+||++|+.+.|.++++++++.+ ++.|+++|++.+ ++++++|+|.++||+++|++|+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 34455568899999999999999999999999999988654 578999999986 6899999999999999999999
Q ss_pred CcccccCCCch-hHHH
Q psy15246 85 PVDRVEGADPE-SLDK 99 (213)
Q Consensus 85 ~~~~~~g~~~~-~l~~ 99 (213)
.+.+..|..+. .|.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 99999996655 4544
No 15
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.87 E-value=9.6e-22 Score=138.32 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=78.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch---hHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP---KLSLNYKVSAVPTFVILKNLKPVDRVEGA 92 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~---~l~~~~~I~~~Pti~~~~~g~~~~~~~g~ 92 (213)
..+++++|.|||+||++|+.+.|.+++++++++ ++.|+.||++++. +++++|+|+++||+++|++|+.+.++.|.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~ 90 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGI 90 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC
Confidence 348999999999999999999999999999995 7999999999874 89999999999999999999999999999
Q ss_pred CchhHHHHHHH
Q psy15246 93 DPESLDKKLQN 103 (213)
Q Consensus 93 ~~~~l~~~i~~ 103 (213)
.+.+|.+.+..
T Consensus 91 ~~~~l~~~~~~ 101 (103)
T cd02985 91 GPDELIGDVLY 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 98888877654
No 16
>KOG0907|consensus
Probab=99.87 E-value=1e-21 Score=138.07 Aligned_cols=87 Identities=34% Similarity=0.656 Sum_probs=81.5
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~ 95 (213)
..+++++|+|||+||++|+.+.|.+++|+.+|+ ++.|++||+++..+++++++|+++|||+++++|+.+.+..|.+..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC--CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 446999999999999999999999999999999 699999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHH
Q psy15246 96 SLDKKLQNQ 104 (213)
Q Consensus 96 ~l~~~i~~~ 104 (213)
++++.+.++
T Consensus 97 ~l~~~i~~~ 105 (106)
T KOG0907|consen 97 ELEKKIAKH 105 (106)
T ss_pred HHHHHHHhc
Confidence 888877654
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=2.1e-21 Score=135.85 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=83.6
Q ss_pred ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
.|++++.+.+.+++. +. ++|.|||+||++|+++.|.|+++++.+++.++.++++|+++++.++++|+|+++||+++++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 378888876666664 33 7899999999999999999999999877546999999999999999999999999999999
Q ss_pred CCCCcccccCCCch-hHHHHHHH
Q psy15246 82 NLKPVDRVEGADPE-SLDKKLQN 103 (213)
Q Consensus 82 ~g~~~~~~~g~~~~-~l~~~i~~ 103 (213)
+|+. .++.|.... +|.++|++
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHHhC
Confidence 9974 566676555 78888753
No 18
>PRK09381 trxA thioredoxin; Provisional
Probab=99.86 E-value=3.5e-21 Score=136.62 Aligned_cols=102 Identities=20% Similarity=0.421 Sum_probs=90.7
Q ss_pred eEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 3 VVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 3 v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
|++++.+.+. +++..+++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++.++.++++|+|+++||+++|+
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence 6778775444 4567799999999999999999999999999999987 7999999999999999999999999999999
Q ss_pred CCCCcccccCCCch-hHHHHHHHHh
Q psy15246 82 NLKPVDRVEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 82 ~g~~~~~~~g~~~~-~l~~~i~~~~ 105 (213)
+|+.+.+..|.... +|.++|+..+
T Consensus 84 ~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 84 NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99988888887655 7999998875
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.86 E-value=1.3e-21 Score=139.47 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=80.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~ 95 (213)
..+++++|.||||||++|+.+.|.|+++++.+++.++.+++||+++++.++++++|+++||+++|++|+.+.+..|....
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 36899999999999999999999999999999854699999999999999999999999999999999988888886654
Q ss_pred -hHHHHHHH
Q psy15246 96 -SLDKKLQN 103 (213)
Q Consensus 96 -~l~~~i~~ 103 (213)
+|.++|++
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 78888875
No 20
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.86 E-value=3.4e-21 Score=133.57 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=79.3
Q ss_pred hhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccccc
Q psy15246 12 VEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVE 90 (213)
Q Consensus 12 ~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~ 90 (213)
..+..+ +++++|+|||+||++|+++.|.++++++.+++ .+.++.||++++++++++|+|.++||+++|++|+.+.++.
T Consensus 5 ~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 83 (96)
T cd02956 5 QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQ 83 (96)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeec
Confidence 334334 78999999999999999999999999999987 7999999999999999999999999999999999888888
Q ss_pred CCCch-hHHHHH
Q psy15246 91 GADPE-SLDKKL 101 (213)
Q Consensus 91 g~~~~-~l~~~i 101 (213)
|.... +|.++|
T Consensus 84 g~~~~~~l~~~l 95 (96)
T cd02956 84 GAQPEEQLRQML 95 (96)
T ss_pred CCCCHHHHHHHh
Confidence 87655 688776
No 21
>PRK10996 thioredoxin 2; Provisional
Probab=99.86 E-value=6.9e-21 Score=140.99 Aligned_cols=101 Identities=26% Similarity=0.512 Sum_probs=91.4
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
+++++.....+.++++++++|.|||+||++|+++.|.++++++++.+ ++.++++|++++++++++|+|+++||+++|++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC
Confidence 56677766677788899999999999999999999999999999886 79999999999999999999999999999999
Q ss_pred CCCcccccCCCch-hHHHHHHHH
Q psy15246 83 LKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 83 g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
|+.+.++.|.... .|.++++++
T Consensus 116 G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 116 GQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999888887776 699998875
No 22
>KOG0191|consensus
Probab=99.85 E-value=1.6e-21 Score=166.98 Aligned_cols=172 Identities=21% Similarity=0.378 Sum_probs=134.3
Q ss_pred chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC-CCcc
Q psy15246 9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL-KPVD 87 (213)
Q Consensus 9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g-~~~~ 87 (213)
.+.......++.++|.||+|||++|+.+.|.|++++..+.+ .+.++.|||+.+.++|++|+|+++||+.+|..| +.+.
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 44555568899999999999999999999999999999997 799999999999999999999999999999998 4455
Q ss_pred cccCCCchhHHHHHHHHhcc--CCCCCCcccccCCCccccc-chhhhhhhheeccCC--------CCCCCC---------
Q psy15246 88 RVEGADPESLDKKLQNQAST--MKNQPSNITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV--------- 147 (213)
Q Consensus 88 ~~~g~~~~~l~~~i~~~~~~--~kg~p~~~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~--------- 147 (213)
+....+...+..++...+.. ..-.+..+..++..+|+.+ .+....+++.||+|| |+|.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~ 196 (383)
T KOG0191|consen 117 YSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKEN 196 (383)
T ss_pred ccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcc
Confidence 44444445788888888765 1111222455666777643 344556999999999 555444
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL 183 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~ 183 (213)
+.++.+|++.+...+..+. ..++||+ .+|-+|..
T Consensus 197 v~~~~~d~~~~~~~~~~~~-v~~~Pt~-~~f~~~~~ 230 (383)
T KOG0191|consen 197 VELGKIDATVHKSLASRLE-VRGYPTL-KLFPPGEE 230 (383)
T ss_pred eEEEeeccchHHHHhhhhc-ccCCceE-EEecCCCc
Confidence 6678888887777777777 7889999 88877655
No 23
>KOG0908|consensus
Probab=99.85 E-value=2.3e-21 Score=151.20 Aligned_cols=105 Identities=28% Similarity=0.546 Sum_probs=96.3
Q ss_pred CceEEeCCchhhh-hh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246 1 MSVVQISEELDVE-KY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77 (213)
Q Consensus 1 M~v~~l~~~~~~~-~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti 77 (213)
|+|+.++++..+. .+ +..+.++|.|+|+||++|++..|.|+.++.+|+ +..|++||+++...++..+||.+.|||
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceE
Confidence 9999999844333 34 556799999999999999999999999999999 799999999999999999999999999
Q ss_pred EEEeCCCCcccccCCCchhHHHHHHHHhcc
Q psy15246 78 VILKNLKPVDRVEGADPESLDKKLQNQAST 107 (213)
Q Consensus 78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 107 (213)
++|+||..+.++.|.+...|++.|.+++..
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999865
No 24
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=9.3e-21 Score=134.26 Aligned_cols=99 Identities=20% Similarity=0.347 Sum_probs=84.1
Q ss_pred ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEE
Q psy15246 2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~ 78 (213)
+|+++++..+.+.+ +++++++|.|||+||++|+++.|.|+++++.+.+ .+.++.+|++. +.+++++|+|+++||++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 47889886666655 6677899999999999999999999999999986 79999999998 88999999999999999
Q ss_pred EEeCCC-----CcccccCCCch-hHHHHH
Q psy15246 79 ILKNLK-----PVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 79 ~~~~g~-----~~~~~~g~~~~-~l~~~i 101 (213)
+|++|+ ....+.|.... +|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 999885 34556665554 688876
No 25
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=4e-21 Score=134.41 Aligned_cols=83 Identities=23% Similarity=0.343 Sum_probs=74.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP 94 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~ 94 (213)
.++++++|.|||+||++|+++.|.|+++++.++ ++.++.||.+ ++++++++|+|.++||+++|++| ...++.|...
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 679999999999999999999999999999998 6889999999 89999999999999999999999 6677788666
Q ss_pred h-hHHHHH
Q psy15246 95 E-SLDKKL 101 (213)
Q Consensus 95 ~-~l~~~i 101 (213)
. +|.+||
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 5 677764
No 26
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=7.1e-21 Score=133.15 Aligned_cols=98 Identities=21% Similarity=0.439 Sum_probs=84.8
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
+++++.+.+...+.++ .++|.|||+||++|+++.|.++++++.+++ ..+.++.+|++++..++++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 6788887666666555 599999999999999999999999999874 3699999999999999999999999999999
Q ss_pred eCCCCcccccCCCch-hHHHHH
Q psy15246 81 KNLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 81 ~~g~~~~~~~g~~~~-~l~~~i 101 (213)
++|+.+.++.|..+. +|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 999988778887765 576654
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=150.59 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=94.4
Q ss_pred eEEeCCchhhhhhc-----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246 3 VVQISEELDVEKYG-----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77 (213)
Q Consensus 3 v~~l~~~~~~~~~~-----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti 77 (213)
+++++++++.+.+. .+++++|.|||+||++|+++.|.|+++++++++ .+.++.+|++++++++++|+|+++||+
T Consensus 32 Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 32 LVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred cEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 67888866666553 358999999999999999999999999999997 799999999999999999999999999
Q ss_pred EEEeCCCCcccccCCCc-hhHHHHHHHHhccCCCCC
Q psy15246 78 VILKNLKPVDRVEGADP-ESLDKKLQNQASTMKNQP 112 (213)
Q Consensus 78 ~~~~~g~~~~~~~g~~~-~~l~~~i~~~~~~~kg~p 112 (213)
++|++|+.+.+..|... ++|.+|+.+......+.|
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~~~~ 146 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFKKALGAP 146 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 99999998888888554 489999999876555444
No 28
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.85 E-value=1.1e-20 Score=149.79 Aligned_cols=166 Identities=17% Similarity=0.246 Sum_probs=116.0
Q ss_pred hhhcCCCeEEEEEEc---CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc-c
Q psy15246 13 EKYGKDKTAVVHFYA---DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD-R 88 (213)
Q Consensus 13 ~~~~~~~~~vV~F~a---~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~-~ 88 (213)
+.+. +...++.|++ +||++|+.+.|.++++++.++.-.+.++.+|.+++++++++|+|.++||+++|++|+.+. +
T Consensus 15 ~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 15 KELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred HhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 3344 4445666888 999999999999999999996323567777777999999999999999999999998874 7
Q ss_pred ccCCCch-hHHHHHHHHhccCCCCCCcccccCCCcccccchhh-hhhhheeccCC-CCCCCC-------------CCceE
Q psy15246 89 VEGADPE-SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQE-VREGLKIYSNW-PTYPQV-------------VPYDT 152 (213)
Q Consensus 89 ~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~-~~~~v~~~apW-P~~~~~-------------v~~~~ 152 (213)
+.|..+. ++.++|+.+++ +.+.. ..++....+.+.+.. ...++.|+++| |.++.+ +.+..
T Consensus 94 ~~G~~~~~~l~~~i~~~~~-~~~~~---~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~ 169 (215)
T TIGR02187 94 YTGIPAGYEFAALIEDIVR-VSQGE---PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEM 169 (215)
T ss_pred EeecCCHHHHHHHHHHHHH-hcCCC---CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEE
Confidence 7786655 79999998864 32221 233444455554322 22444588999 445443 56678
Q ss_pred EeccCCHHHHHHHHhhcCCCcccceEeC--Ce-EeehH
Q psy15246 153 FDILQDQEVREGLKIYSNWPTYPQVYVN--TE-LIGGL 187 (213)
Q Consensus 153 ~d~~~~~~~~~~l~~~~~~pt~p~i~i~--g~-~~gg~ 187 (213)
+|+..++++...+. + .++|++.++ |+ ++|..
T Consensus 170 vD~~~~~~~~~~~~-V---~~vPtl~i~~~~~~~~G~~ 203 (215)
T TIGR02187 170 IEANENPDLAEKYG-V---MSVPKIVINKGVEEFVGAY 203 (215)
T ss_pred EeCCCCHHHHHHhC-C---ccCCEEEEecCCEEEECCC
Confidence 89888887766544 3 445555555 44 56643
No 29
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=1e-20 Score=131.58 Aligned_cols=96 Identities=26% Similarity=0.534 Sum_probs=86.0
Q ss_pred ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
+|.++++ +...++++.+++++|+||++||++|+++.+.++++++.++ ++.|+.+|++++.+++++|+|.++||+++|
T Consensus 1 ~v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred CeEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 4677877 5566667889999999999999999999999999999887 699999999999999999999999999999
Q ss_pred eCCCCcccccCCCchhHHH
Q psy15246 81 KNLKPVDRVEGADPESLDK 99 (213)
Q Consensus 81 ~~g~~~~~~~g~~~~~l~~ 99 (213)
++|+.+.+..|...++|.+
T Consensus 79 ~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 79 KNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred eCCeEEEEEeCCCHHHhhc
Confidence 9999999999987766653
No 30
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=8.3e-21 Score=135.67 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=81.6
Q ss_pred ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
++.++++ ..+.+.++++++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.++||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3677888 6666777888999999999999999999999999999998 699999999999999999999999999999
Q ss_pred eCCCCcccccCCC
Q psy15246 81 KNLKPVDRVEGAD 93 (213)
Q Consensus 81 ~~g~~~~~~~g~~ 93 (213)
++|+.+.+..|..
T Consensus 83 k~G~~v~~~~g~~ 95 (113)
T cd02989 83 KNGKTVDRIVGFE 95 (113)
T ss_pred ECCEEEEEEECcc
Confidence 9999888777654
No 31
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.84 E-value=1.6e-20 Score=137.99 Aligned_cols=108 Identities=14% Similarity=0.251 Sum_probs=86.4
Q ss_pred eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE-
Q psy15246 3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV- 78 (213)
Q Consensus 3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~- 78 (213)
+.++.+ ....+.+ +.+++++|.|||+||++|+.+.|.++++++++++ .+.|++||+|++++++++|+|++.||++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMF 83 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence 345665 3333334 5688999999999999999999999999999996 6888999999999999999999887666
Q ss_pred EEeCCC-CcccccC--------CCch-hHHHHHHHHhcc-CCCC
Q psy15246 79 ILKNLK-PVDRVEG--------ADPE-SLDKKLQNQAST-MKNQ 111 (213)
Q Consensus 79 ~~~~g~-~~~~~~g--------~~~~-~l~~~i~~~~~~-~kg~ 111 (213)
+|++|+ .+.+..| .... +|.+.++..+.. ++|.
T Consensus 84 ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~ 127 (142)
T PLN00410 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGR 127 (142)
T ss_pred EEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 899998 8888888 3333 687777776543 4443
No 32
>KOG0190|consensus
Probab=99.84 E-value=6.5e-21 Score=163.91 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=94.3
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
|+++|.+++.+.+..+..++|.||||||+||++++|.++++++.+.. +.+.+++|||+++.++|.+|+|++|||+.+|
T Consensus 27 Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiF 106 (493)
T KOG0190|consen 27 VLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIF 106 (493)
T ss_pred eEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEE
Confidence 78899999999999999999999999999999999999999999875 4799999999999999999999999999999
Q ss_pred eCCCC-cccccCCCchhHHHHHHHHhcc
Q psy15246 81 KNLKP-VDRVEGADPESLDKKLQNQAST 107 (213)
Q Consensus 81 ~~g~~-~~~~~g~~~~~l~~~i~~~~~~ 107 (213)
++|+. ..|.+++..+.|..|+++..+.
T Consensus 107 rnG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 107 RNGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred ecCCcceeccCcccHHHHHHHHHhccCC
Confidence 99996 5544445555899999998654
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.84 E-value=2.6e-20 Score=130.61 Aligned_cols=100 Identities=28% Similarity=0.419 Sum_probs=86.7
Q ss_pred ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCC--chhHHHhCCCccccEEE
Q psy15246 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAED--LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~ 78 (213)
.|+++++....+.++++++++|.|||+||++|+++.|.++++++.++. ..+.++.+|+++ ++.++++++|+++||++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 367888877777788888999999999999999999999999998872 268999999998 99999999999999999
Q ss_pred EEeCCCCcccccCCCch-hHHHHH
Q psy15246 79 ILKNLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 79 ~~~~g~~~~~~~g~~~~-~l~~~i 101 (213)
+|++|+.+.++.|.... +|.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999977778776655 576653
No 34
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.83 E-value=1.4e-20 Score=134.53 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=77.8
Q ss_pred eEEeCCchhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 3 VVQISEELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 3 v~~l~~~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
+.+++++.+.+.+.. +++++|+||+|||++|+.+.|.+++++++++ ++.|++||++++ +++++|+|.++||+++
T Consensus 6 v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 6 VREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 677888555555533 3899999999999999999999999999998 689999999999 9999999999999999
Q ss_pred EeCCCCcccccCCC
Q psy15246 80 LKNLKPVDRVEGAD 93 (213)
Q Consensus 80 ~~~g~~~~~~~g~~ 93 (213)
|++|+.+.+..|..
T Consensus 83 f~~G~~v~~~~G~~ 96 (113)
T cd02957 83 YKNGELIDNIVGFE 96 (113)
T ss_pred EECCEEEEEEecHH
Confidence 99999988887744
No 35
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.83 E-value=2.9e-20 Score=130.91 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=83.6
Q ss_pred EeCCchhhhhhcCCCeEEEEEEcCC--CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 5 QISEELDVEKYGKDKTAVVHFYADW--SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 5 ~l~~~~~~~~~~~~~~~vV~F~a~w--C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
+++..++.+.++.++.++|.|||+| ||+|+.+.|.++++++++++ .+.|++||++++++++.+|+|+++||+++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~sIPTli~fkd 92 (111)
T cd02965 14 RVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLRTPALLFFRD 92 (111)
T ss_pred ccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC
Confidence 4566566677789999999999997 99999999999999999996 79999999999999999999999999999999
Q ss_pred CCCcccccCCCch-hHH
Q psy15246 83 LKPVDRVEGADPE-SLD 98 (213)
Q Consensus 83 g~~~~~~~g~~~~-~l~ 98 (213)
|+.+.+..|.... ++.
T Consensus 93 Gk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 93 GRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEEeCccCHHHHh
Confidence 9999999887665 443
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=8.3e-20 Score=127.92 Aligned_cols=98 Identities=21% Similarity=0.333 Sum_probs=81.5
Q ss_pred eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
|+++++....+.+ +.+++++|.||++||++|+++.|.|.++++.+++ .+.++.+|++++++++++|+|+++||+++|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 6778886566555 5566799999999999999999999999999886 7999999999999999999999999999999
Q ss_pred CC-CCcccccCC-CchhHHHHH
Q psy15246 82 NL-KPVDRVEGA-DPESLDKKL 101 (213)
Q Consensus 82 ~g-~~~~~~~g~-~~~~l~~~i 101 (213)
+| +....+.|. +.++|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHHHHHHHh
Confidence 88 333344454 444687775
No 37
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.83 E-value=4.9e-20 Score=127.84 Aligned_cols=90 Identities=43% Similarity=0.748 Sum_probs=80.2
Q ss_pred hhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246 11 DVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR 88 (213)
Q Consensus 11 ~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~ 88 (213)
..+.+.. +++++|.||++||++|+++.+.++++++.+.. .+.++++|++++++++++|+|.++||+++|++|+.+.+
T Consensus 5 ~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 83 (97)
T cd02984 5 FEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDR 83 (97)
T ss_pred HHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEE
Confidence 3344433 59999999999999999999999999999644 89999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHH
Q psy15246 89 VEGADPESLDKKL 101 (213)
Q Consensus 89 ~~g~~~~~l~~~i 101 (213)
..|...++|.+.|
T Consensus 84 ~~g~~~~~l~~~~ 96 (97)
T cd02984 84 VSGADPKELAKKV 96 (97)
T ss_pred EeCCCHHHHHHhh
Confidence 9999888887765
No 38
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.82 E-value=5.5e-20 Score=137.44 Aligned_cols=91 Identities=23% Similarity=0.431 Sum_probs=79.9
Q ss_pred eEEeCCchhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcc------c
Q psy15246 3 VVQISEELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA------V 74 (213)
Q Consensus 3 v~~l~~~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~------~ 74 (213)
+++++.+.+.+.+ ..+++++|+|||+||++|+++.|.++++++++++.++.|++||++++++++++|+|.+ +
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~ 109 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQL 109 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCC
Confidence 5667775555555 3457999999999999999999999999999875369999999999999999999998 9
Q ss_pred cEEEEEeCCCCcccccCCC
Q psy15246 75 PTFVILKNLKPVDRVEGAD 93 (213)
Q Consensus 75 Pti~~~~~g~~~~~~~g~~ 93 (213)
||+++|++|+.+.+..|.+
T Consensus 110 PT~ilf~~Gk~v~r~~G~~ 128 (152)
T cd02962 110 PTIILFQGGKEVARRPYYN 128 (152)
T ss_pred CEEEEEECCEEEEEEeccc
Confidence 9999999999999988854
No 39
>PRK10824 glutaredoxin-4; Provisional
Probab=99.82 E-value=3.7e-20 Score=131.41 Aligned_cols=94 Identities=31% Similarity=0.582 Sum_probs=78.3
Q ss_pred HHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcC
Q psy15246 97 LDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSN 170 (213)
Q Consensus 97 l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~ 170 (213)
..+++++.+++ +||+|.. +.|++.. .++.++..+. ++|..+|+..+++++..|+++++
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~-p~Cpyc~-------~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg 67 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKL-PSCGFSA-------QAVQALSACG--------ERFAYVDILQNPDIRAELPKYAN 67 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCC-CCCchHH-------HHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhC
Confidence 44566666655 8888876 6777776 3445555443 78999999999999999999999
Q ss_pred CCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246 171 WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP 206 (213)
Q Consensus 171 ~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~ 206 (213)
|||+|||||+|+||||+|++.+|+++|+|.++|+..
T Consensus 68 ~~TVPQIFI~G~~IGG~ddl~~l~~~G~L~~lL~~~ 103 (115)
T PRK10824 68 WPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKET 103 (115)
T ss_pred CCCCCeEEECCEEEcChHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999643
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=1.7e-19 Score=126.99 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=80.5
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
|+.+.+++.. +.++++++|.|||+||++|+++.|.|+++++.+++ .++.++.+|+++.++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~~--~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 2 VLDLDDSFKD--VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL 79 (104)
T ss_pred eeechhhhhh--hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE
Confidence 3445544332 45678999999999999999999999999999853 2599999999999999999999999999999
Q ss_pred eCCCCcccccCCCch-hHHHHHHHH
Q psy15246 81 KNLKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 81 ~~g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
++|.. ..+.|.... +|.+++++.
T Consensus 80 ~~~~~-~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 80 KGDLA-YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cCCCc-eeecCCCCHHHHHHHHHhh
Confidence 87754 445665554 789888764
No 41
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=2.2e-19 Score=127.53 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=80.7
Q ss_pred ceEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHH-hCCCccccE
Q psy15246 2 SVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSL-NYKVSAVPT 76 (213)
Q Consensus 2 ~v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~-~~~I~~~Pt 76 (213)
.|++++.+.+...+ .++++++|.||++||++|+++.|.|+++++.+++.++.++.||++. +..++. .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 37788886555554 3578999999999999999999999999999986459999999998 578886 599999999
Q ss_pred EEEEeCC-CCcccccC--CCchhHHHHH
Q psy15246 77 FVILKNL-KPVDRVEG--ADPESLDKKL 101 (213)
Q Consensus 77 i~~~~~g-~~~~~~~g--~~~~~l~~~i 101 (213)
+++|++| +....+.| .+..+|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999866 34445666 3445677664
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.81 E-value=3.6e-19 Score=124.24 Aligned_cols=98 Identities=21% Similarity=0.337 Sum_probs=84.4
Q ss_pred CCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC
Q psy15246 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP 85 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~ 85 (213)
+...+.+.+.++++++|.||++||++|+++.+.|+++++.+++. ++.++.+|++++++++++|+|+++|++++|++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc
Confidence 45555666678999999999999999999999999999998853 49999999999999999999999999999998875
Q ss_pred cccccCCCch-hHHHHHHHH
Q psy15246 86 VDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 86 ~~~~~g~~~~-~l~~~i~~~ 104 (213)
...+.|.... +|..+|+++
T Consensus 82 ~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 82 PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ceeecCCCCHHHHHHHHHhc
Confidence 5566676554 799998875
No 43
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.81 E-value=2.8e-19 Score=127.09 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=81.4
Q ss_pred ceEEeCCchhhhhhcCCCeEEEEEEc--CCCH---HHHhHHHHHHHHHHHcCCCcEEEEEEeC-----CCchhHHHhCCC
Q psy15246 2 SVVQISEELDVEKYGKDKTAVVHFYA--DWSD---ECKHMNTLFDEMSKQSKYSQVVFARCIA-----EDLPKLSLNYKV 71 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~~~~~~vV~F~a--~wC~---~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----~~~~~l~~~~~I 71 (213)
.+++|+++++.+++.+++.+||.||| |||+ +|+++.|.+.+.+. .|.+++||| .++.+||++|+|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhhHHHHHHhCC
Confidence 36889998888899999999999999 9999 88888888777554 488999999 467899999999
Q ss_pred c--cccEEEEEeCCC---CcccccC-CCchhHHHHHHHH
Q psy15246 72 S--AVPTFVILKNLK---PVDRVEG-ADPESLDKKLQNQ 104 (213)
Q Consensus 72 ~--~~Pti~~~~~g~---~~~~~~g-~~~~~l~~~i~~~ 104 (213)
+ ++||+++|++|. ++.+.++ ++.++|.+||.+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999884 3444443 5556899999864
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=4.9e-19 Score=124.06 Aligned_cols=99 Identities=24% Similarity=0.363 Sum_probs=81.8
Q ss_pred ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
+|.+++.+.+...+ +.+++++|.||++||++|+++.|.|+++++.+++ .++.++++|++++ +++..+++.++||+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 57889886666655 5568999999999999999999999999999875 3699999999987 6889999999999999
Q ss_pred EeCCC--CcccccCCCch-hHHHHH
Q psy15246 80 LKNLK--PVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 80 ~~~g~--~~~~~~g~~~~-~l~~~i 101 (213)
|++|+ ...++.|.... +|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99887 45556665444 676664
No 45
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.80 E-value=5.4e-19 Score=122.93 Aligned_cols=88 Identities=30% Similarity=0.630 Sum_probs=80.2
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~ 95 (213)
..+++++|.||++||++|+.+.+.++++++.+++ ++.|+.+|++++.+++++|+|.++||+++|++|+.+.+..|....
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~ 90 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPK 90 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCH
Confidence 4467999999999999999999999999998886 799999999999999999999999999999999988888887774
Q ss_pred -hHHHHHHHH
Q psy15246 96 -SLDKKLQNQ 104 (213)
Q Consensus 96 -~l~~~i~~~ 104 (213)
++.++|++.
T Consensus 91 ~~l~~~l~~~ 100 (101)
T TIGR01068 91 AALKQLINKN 100 (101)
T ss_pred HHHHHHHHhh
Confidence 799998875
No 46
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.80 E-value=3.9e-19 Score=125.13 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=67.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR 88 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~ 88 (213)
+++++++|.|+|+||++|+.+.|.++++++++++ .+.|++||+++.++++++|+|++.||+++|++|+.+.-
T Consensus 12 ~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~ 83 (114)
T cd02986 12 TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKV 83 (114)
T ss_pred cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEE
Confidence 3699999999999999999999999999999984 39999999999999999999999999999999986543
No 47
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.80 E-value=4.6e-19 Score=131.63 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=84.3
Q ss_pred hhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc--hhHHHhCCCccccEEEEEe-CCCCc
Q psy15246 10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVSAVPTFVILK-NLKPV 86 (213)
Q Consensus 10 ~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~--~~l~~~~~I~~~Pti~~~~-~g~~~ 86 (213)
...+.+.++++++|+|||+||++|+.+.|.++++++.+.+ .+.|+.||++.. .+++++|+|.++||+++|+ +|+.+
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3445568899999999999999999999999999999986 678888887754 5899999999999999995 89999
Q ss_pred ccccCCCch-hHHHHHHHHhcc
Q psy15246 87 DRVEGADPE-SLDKKLQNQAST 107 (213)
Q Consensus 87 ~~~~g~~~~-~l~~~i~~~~~~ 107 (213)
.+..|.... +|.++|+++++.
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHcC
Confidence 999998876 699999998753
No 48
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.79 E-value=1e-18 Score=122.54 Aligned_cols=99 Identities=25% Similarity=0.410 Sum_probs=81.1
Q ss_pred eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCC-chhHHHhCCCccccEEEE
Q psy15246 3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAED-LPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~~ 79 (213)
++++++....+.+ +.+++++|.||++||++|+++.|.|+++++.++. .++.++.+|+++ +++++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678886555555 4556999999999999999999999999999872 369999999999 999999999999999999
Q ss_pred EeCC-CCcccccCCCc-hhHHHHH
Q psy15246 80 LKNL-KPVDRVEGADP-ESLDKKL 101 (213)
Q Consensus 80 ~~~g-~~~~~~~g~~~-~~l~~~i 101 (213)
|++| +....+.|... ++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9877 45555666444 3677664
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=1.3e-18 Score=121.03 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=80.9
Q ss_pred hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccC
Q psy15246 12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG 91 (213)
Q Consensus 12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g 91 (213)
.+..+.+++++|.||++||+.|+.+.|.++++++++.+ ++.++.+|++++++++++++|.++||+++|++|+.+.+..|
T Consensus 7 ~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 7 KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 34457899999999999999999999999999999986 79999999999999999999999999999999999999989
Q ss_pred CCch-hHHHHH
Q psy15246 92 ADPE-SLDKKL 101 (213)
Q Consensus 92 ~~~~-~l~~~i 101 (213)
..+. +|.+++
T Consensus 86 ~~~~~~~~~~l 96 (97)
T cd02949 86 VKMKSEYREFI 96 (97)
T ss_pred CccHHHHHHhh
Confidence 7776 677765
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.78 E-value=1e-18 Score=122.90 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=78.2
Q ss_pred hhhhhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEEEEe--
Q psy15246 11 DVEKYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFVILK-- 81 (213)
Q Consensus 11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~~~~-- 81 (213)
..+.++++++++|.||++||++|+++.+.+ +++++.+.+ ++.++.+|+++ ..+++++|+|.++||+++|+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~ 82 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG 82 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 345668899999999999999999999988 678888876 89999999987 57899999999999999998
Q ss_pred CCCCcccccCCCch-hHHHHH
Q psy15246 82 NLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 82 ~g~~~~~~~g~~~~-~l~~~i 101 (213)
+|+.+.+..|..+. +|.++|
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCcccccccCHHHHHHHh
Confidence 78888888887766 677765
No 51
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=6.9e-19 Score=134.92 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=78.4
Q ss_pred ceEEeCC-chhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246 2 SVVQISE-ELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77 (213)
Q Consensus 2 ~v~~l~~-~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti 77 (213)
.++++++ ..+.+.+.. +.+++|+||++||++|+.+.|.++++++.++ .+.|++||+++. +++.+|+|.++||+
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 4678888 666666533 3499999999999999999999999999998 799999999988 99999999999999
Q ss_pred EEEeCCCCcccccCCCc
Q psy15246 78 VILKNLKPVDRVEGADP 94 (213)
Q Consensus 78 ~~~~~g~~~~~~~g~~~ 94 (213)
++|++|+.+.+..|...
T Consensus 140 llyk~G~~v~~~vG~~~ 156 (175)
T cd02987 140 LVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEECCEEEEEEechHH
Confidence 99999998887776543
No 52
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=2.3e-18 Score=119.19 Aligned_cols=96 Identities=26% Similarity=0.389 Sum_probs=81.6
Q ss_pred EeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC
Q psy15246 5 QISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL 83 (213)
Q Consensus 5 ~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g 83 (213)
+++.......+.++++++|.||++||++|+.+.+.|+++++.++ ..++.++.+|++++..++++|+|+++||+++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 56676667777777899999999999999999999999999984 22899999999999999999999999999999977
Q ss_pred -CCcccccCCCch-hHHHH
Q psy15246 84 -KPVDRVEGADPE-SLDKK 100 (213)
Q Consensus 84 -~~~~~~~g~~~~-~l~~~ 100 (213)
+...++.|.... +|.+|
T Consensus 82 ~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CcccccCCCCcCHHHHHhh
Confidence 666777775543 56655
No 53
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.77 E-value=4.8e-18 Score=121.40 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=79.5
Q ss_pred hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc--cc
Q psy15246 12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD--RV 89 (213)
Q Consensus 12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~--~~ 89 (213)
.+.+.+...++|.|||+||++|+.+.|.++++++.++ .+.+..+|.+++++++++|+|.++||+++|++|.... ++
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 3445678889999999999999999999999998874 7999999999999999999999999999999875433 56
Q ss_pred cCCCch-hHHHHHHHHhc
Q psy15246 90 EGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 90 ~g~~~~-~l~~~i~~~~~ 106 (213)
.|..+. ++.++|+..++
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 675555 79999988763
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.75 E-value=6.8e-18 Score=120.82 Aligned_cols=83 Identities=17% Similarity=0.349 Sum_probs=71.1
Q ss_pred ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC--CchhHHHhCCCccccE
Q psy15246 2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE--DLPKLSLNYKVSAVPT 76 (213)
Q Consensus 2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~--~~~~l~~~~~I~~~Pt 76 (213)
++++++...+.+.+ ..+++++|.|||+||++|+.+.|.|+++++.+++ ..+.|+.+||+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47888886566655 5567999999999999999999999999998763 25899999986 4778999999999999
Q ss_pred EEEEeCCC
Q psy15246 77 FVILKNLK 84 (213)
Q Consensus 77 i~~~~~g~ 84 (213)
+++|++|.
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999886
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.74 E-value=1.4e-17 Score=145.49 Aligned_cols=104 Identities=22% Similarity=0.394 Sum_probs=91.2
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
|+++++......++++++++|.|||+||++|+++.|.|.++++.+.+ .++.|+.|||+.+.++|++|+|.++||+++|
T Consensus 3 v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 3 VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred ceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 67888877788888899999999999999999999999999988764 2499999999999999999999999999999
Q ss_pred eCCCC-cccccCCCch-hHHHHHHHHhc
Q psy15246 81 KNLKP-VDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 81 ~~g~~-~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
++|+. +..+.|.... +|.+|+.+.+.
T Consensus 83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 99987 5556665544 79999998865
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=1.7e-17 Score=145.88 Aligned_cols=104 Identities=20% Similarity=0.371 Sum_probs=90.2
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
+++++.......+.+++.++|.|||+||++|+++.|.|+++++.+.. .++.++.|||+.+.++|++|+|.++||+++|
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 113 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFF 113 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEE
Confidence 56777777777788899999999999999999999999999887753 2699999999999999999999999999999
Q ss_pred eCCCCcccccCCCc-hhHHHHHHHHhcc
Q psy15246 81 KNLKPVDRVEGADP-ESLDKKLQNQAST 107 (213)
Q Consensus 81 ~~g~~~~~~~g~~~-~~l~~~i~~~~~~ 107 (213)
++|+.+ ++.|... ..|.+|+.+.++.
T Consensus 114 ~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 114 NKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred ECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 999877 5666554 4899999998754
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=2.4e-17 Score=142.50 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=83.2
Q ss_pred eEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHH-HhCCCccccEE
Q psy15246 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLS-LNYKVSAVPTF 77 (213)
Q Consensus 3 v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~-~~~~I~~~Pti 77 (213)
|++|+.+++...+ +.++++||.||||||++|+.+.|.|+++++++++.++.|+.||++.+. +++ ++|+|.++||+
T Consensus 353 Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi 432 (463)
T TIGR00424 353 VVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432 (463)
T ss_pred eEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence 7788887666665 378999999999999999999999999999998645899999999764 454 78999999999
Q ss_pred EEEeCCC--CcccccC-CCchhHHHHHHHH
Q psy15246 78 VILKNLK--PVDRVEG-ADPESLDKKLQNQ 104 (213)
Q Consensus 78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~ 104 (213)
++|++|. .+.+..| ++.+.|..||+.+
T Consensus 433 i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 433 LFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred EEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999885 3444344 4555799988753
No 58
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=2.5e-17 Score=142.32 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=85.2
Q ss_pred eEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHH-hCCCccccEE
Q psy15246 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSL-NYKVSAVPTF 77 (213)
Q Consensus 3 v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~-~~~I~~~Pti 77 (213)
|++++.+++.+.+ ..+++++|.||||||++|++|.|.|+++++.+.+.++.|+++|++ .+.++++ +|+|.++||+
T Consensus 347 Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTi 426 (457)
T PLN02309 347 VVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 426 (457)
T ss_pred cEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEE
Confidence 6778886666654 578999999999999999999999999999998646999999999 7888996 6999999999
Q ss_pred EEEeCCC--CcccccC-CCchhHHHHHHHH
Q psy15246 78 VILKNLK--PVDRVEG-ADPESLDKKLQNQ 104 (213)
Q Consensus 78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~ 104 (213)
++|++|. .+.+..| ++.++|..||+.+
T Consensus 427 l~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 427 LLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999774 3444444 4556899999864
No 59
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.73 E-value=2.5e-17 Score=119.15 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=76.7
Q ss_pred EEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----------hHHHhCC--
Q psy15246 4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----------KLSLNYK-- 70 (213)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~-- 70 (213)
.+++.+...+.+++++.++|+|+++|||+|+.+.|.+++++++. ++.++.||.+.+. ++.++|+
T Consensus 9 ~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 9 EVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred eecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 45666667777888999999999999999999999999999983 4678888887543 5556665
Q ss_pred --CccccEEEEEeCCCCcccccCC-Cch-hHHHHHH
Q psy15246 71 --VSAVPTFVILKNLKPVDRVEGA-DPE-SLDKKLQ 102 (213)
Q Consensus 71 --I~~~Pti~~~~~g~~~~~~~g~-~~~-~l~~~i~ 102 (213)
|.++||+++|++|+.+.+..|. .+. +|.+++.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999999998883 323 6777653
No 60
>KOG4277|consensus
Probab=99.72 E-value=5.5e-18 Score=135.89 Aligned_cols=93 Identities=20% Similarity=0.409 Sum_probs=84.4
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA 92 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~ 92 (213)
...+..|+|.||||||+||+++.|.|.++.-.+++ .-+++.++||+..+.++.+++|++||||.+|++|..+.+.+|+
T Consensus 40 nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 40 NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCc
Confidence 46788999999999999999999999999888875 3589999999999999999999999999999999999988888
Q ss_pred CchhHHHHHHHHhcc
Q psy15246 93 DPESLDKKLQNQAST 107 (213)
Q Consensus 93 ~~~~l~~~i~~~~~~ 107 (213)
..++|.+|..+..+.
T Consensus 120 ~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAA 134 (468)
T ss_pred cHHHHHHHHHhcccc
Confidence 888899998877654
No 61
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.71 E-value=3.3e-17 Score=127.22 Aligned_cols=87 Identities=26% Similarity=0.352 Sum_probs=73.6
Q ss_pred ceEEeCCchhh-hhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 2 SVVQISEELDV-EKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 2 ~v~~l~~~~~~-~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
.|.+++...+. ++..+ +.++||+||++||++|+.+.|.|+++++.|+ .+.|++||++.. +.+|+|.++||++
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 36778875444 44433 4589999999999999999999999999998 799999999864 6899999999999
Q ss_pred EEeCCCCcccccCCC
Q psy15246 79 ILKNLKPVDRVEGAD 93 (213)
Q Consensus 79 ~~~~g~~~~~~~g~~ 93 (213)
+|++|+.+.++.|..
T Consensus 158 iyk~G~~v~~ivG~~ 172 (192)
T cd02988 158 VYRNGDIVKQFIGLL 172 (192)
T ss_pred EEECCEEEEEEeCch
Confidence 999999888877753
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.71 E-value=9.5e-17 Score=116.60 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=78.4
Q ss_pred hhhhcCC-CeEEEEEEcCCCHHHHhHHHHHH---HHHHHcCCCcEEEEEEeCCCc-------------hhHHHhCCCccc
Q psy15246 12 VEKYGKD-KTAVVHFYADWSDECKHMNTLFD---EMSKQSKYSQVVFARCIAEDL-------------PKLSLNYKVSAV 74 (213)
Q Consensus 12 ~~~~~~~-~~~vV~F~a~wC~~C~~~~~~~~---~l~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~I~~~ 74 (213)
.++..++ ++++|.|||+||++|+++.+.+. ++.+.+.+ ++.++.+|.+.+ .+++.+|+|.++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~ 85 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT 85 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc
Confidence 3455777 99999999999999999999885 56666654 788999998864 689999999999
Q ss_pred cEEEEEeC--CCCcccccCCCch-hHHHHHHHHhc
Q psy15246 75 PTFVILKN--LKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 75 Pti~~~~~--g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
||+++|.+ |+.+.+..|.... .+.++|+..++
T Consensus 86 Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 86 PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999985 5888888897765 78888888764
No 63
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.69 E-value=1.6e-16 Score=107.97 Aligned_cols=88 Identities=36% Similarity=0.667 Sum_probs=77.7
Q ss_pred hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccC
Q psy15246 12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG 91 (213)
Q Consensus 12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g 91 (213)
...+..+++++|.||++||++|+.+.+.++++++..+ ++.++.+|++.+.+++++|++.++||++++++|+.+....|
T Consensus 4 ~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 4 EELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred HHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 3445666999999999999999999999999998844 79999999999999999999999999999999998888888
Q ss_pred CCch-hHHHHH
Q psy15246 92 ADPE-SLDKKL 101 (213)
Q Consensus 92 ~~~~-~l~~~i 101 (213)
.... +|.++|
T Consensus 82 ~~~~~~l~~~i 92 (93)
T cd02947 82 ADPKEELEEFL 92 (93)
T ss_pred CCCHHHHHHHh
Confidence 7764 677765
No 64
>KOG0912|consensus
Probab=99.69 E-value=8.7e-17 Score=129.00 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=87.2
Q ss_pred CCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc----CCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQS----KYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~----~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
+.++...++.+...++|.|||+||+.++.++|.|++.++.+ ++.++.+++|||+++.+++++|.|..|||+.+|++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 45566777888999999999999999999999999988664 43479999999999999999999999999999999
Q ss_pred CCCcc-cccCCCch-hHHHHHHHHhcc
Q psy15246 83 LKPVD-RVEGADPE-SLDKKLQNQAST 107 (213)
Q Consensus 83 g~~~~-~~~g~~~~-~l~~~i~~~~~~ 107 (213)
|.... .+.|.++. .|.++|++.++.
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHhcc
Confidence 98776 45566655 799999988753
No 65
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.68 E-value=1.7e-16 Score=110.11 Aligned_cols=56 Identities=48% Similarity=0.924 Sum_probs=53.9
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~ 203 (213)
++|..+|+..+++.++.+++++|++|+|||||+|++|||+|++.+|+++|+|.++|
T Consensus 42 i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 42 VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHCcChHHhC
Confidence 78999999999999999999999999999999999999999999999999999876
No 66
>KOG0190|consensus
Probab=99.68 E-value=1.1e-16 Score=137.89 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=80.3
Q ss_pred ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
+|..+-. ++..-++..++.++|.||||||+||+++.|+|++|++.+++ .++.++++|++.|.- ....+.++|||.+
T Consensus 367 pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 367 PVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILF 444 (493)
T ss_pred CeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEE
Confidence 3555555 44444568999999999999999999999999999999997 479999999998853 3446777999999
Q ss_pred EeCCC---CcccccCCCchhHHHHHHHHh
Q psy15246 80 LKNLK---PVDRVEGADPESLDKKLQNQA 105 (213)
Q Consensus 80 ~~~g~---~~~~~~g~~~~~l~~~i~~~~ 105 (213)
|+.|. ++.+-+++..++|..|+.+..
T Consensus 445 ~pag~k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 445 FPAGHKSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred ecCCCCCCCcccCCCcchHHHHhhhccCC
Confidence 99764 444433445558999998875
No 67
>PTZ00102 disulphide isomerase; Provisional
Probab=99.67 E-value=3.9e-16 Score=137.27 Aligned_cols=104 Identities=19% Similarity=0.344 Sum_probs=87.2
Q ss_pred eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
+..++.+.+.+ +..++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.+...+++++|+++||+++|
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~ 438 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFV 438 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEE
Confidence 45566644444 468899999999999999999999999999998874 3599999999999999999999999999999
Q ss_pred eCCCCc-ccccCCCch-hHHHHHHHHhc
Q psy15246 81 KNLKPV-DRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 81 ~~g~~~-~~~~g~~~~-~l~~~i~~~~~ 106 (213)
++|+.+ .++.|.... +|.++|++++.
T Consensus 439 ~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 439 KAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 988654 356775555 79999999863
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.67 E-value=5.8e-16 Score=108.40 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEEEeC--CCCcccccCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVILKN--LKPVDRVEGA 92 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~~~~--g~~~~~~~g~ 92 (213)
.++++++.|+++||++|+.+.|.++++++++++ ++.|+.||+++++++++.|+|. ++|+++++++ |+...+..|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 378999999999999999999999999999997 8999999999999999999999 9999999998 7666666665
Q ss_pred -CchhHHHHHHHH
Q psy15246 93 -DPESLDKKLQNQ 104 (213)
Q Consensus 93 -~~~~l~~~i~~~ 104 (213)
+.++|.+|+++.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 455899998875
No 69
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.67 E-value=3.7e-16 Score=111.93 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=65.9
Q ss_pred hhhhhhc--CCCeEEEEEEc-------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------chhHHHhCCCc-
Q psy15246 10 LDVEKYG--KDKTAVVHFYA-------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------LPKLSLNYKVS- 72 (213)
Q Consensus 10 ~~~~~~~--~~~~~vV~F~a-------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~~~l~~~~~I~- 72 (213)
.+.+.+. ++++++|.||| +||++|+.+.|.+++++.++++ ++.|++||+++ +.+++.+++|.
T Consensus 11 ~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 11 EFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 3344443 37899999999 9999999999999999999986 79999999976 46999999999
Q ss_pred cccEEEEEeCCCCcc
Q psy15246 73 AVPTFVILKNLKPVD 87 (213)
Q Consensus 73 ~~Pti~~~~~g~~~~ 87 (213)
++||+++|++|+.+.
T Consensus 90 ~iPT~~~~~~~~~l~ 104 (119)
T cd02952 90 GVPTLLRWKTPQRLV 104 (119)
T ss_pred CCCEEEEEcCCceec
Confidence 999999998776544
No 70
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.63 E-value=2.2e-15 Score=101.10 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=67.9
Q ss_pred EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc-hhHHH
Q psy15246 21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-ESLDK 99 (213)
Q Consensus 21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~-~~l~~ 99 (213)
.+..||++||++|+.+.|.+++++++++. .+.+..||.+++++++++|++.++||+++ +|+ .+..|..+ ++|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHH
Confidence 36689999999999999999999999876 69999999999999999999999999986 665 25667654 47888
Q ss_pred HHHHH
Q psy15246 100 KLQNQ 104 (213)
Q Consensus 100 ~i~~~ 104 (213)
++++.
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 88765
No 71
>KOG0191|consensus
Probab=99.62 E-value=3.9e-15 Score=127.66 Aligned_cols=169 Identities=18% Similarity=0.313 Sum_probs=116.2
Q ss_pred eEEeCCchh-hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 3 VVQISEELD-VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 3 v~~l~~~~~-~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
+.+++...+ ..+......++|.||+|||+||+.+.|.|++++..+.. ..+.++.+|++.+..++++++|+++||+++|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 556666434 44557888999999999999999999999999998863 4799999999999999999999999999999
Q ss_pred eCCCC-cccccCC-CchhHHHHHHHHhccCCCCCCccccc-CC-----------CcccccchhhhhhhheeccCC-----
Q psy15246 81 KNLKP-VDRVEGA-DPESLDKKLQNQASTMKNQPSNITHV-PY-----------DTFDILQDQEVREGLKIYSNW----- 141 (213)
Q Consensus 81 ~~g~~-~~~~~g~-~~~~l~~~i~~~~~~~kg~p~~~~~~-~~-----------~~f~~l~~~~~~~~v~~~apW----- 141 (213)
.+|.. ..++.|. +...|.+|+.+....- ..+...... +. ..++.. .....++++++++|
T Consensus 226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDSDSIVSFVEKKERRN-IPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWCGHCG 303 (383)
T ss_pred cCCCcccccccccccHHHHHHHHHhhcCCC-CCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchhhccc
Confidence 98877 5555554 4458999999886530 000000000 00 001111 12234899999999
Q ss_pred ---CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246 142 ---PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTY 174 (213)
Q Consensus 142 ---P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~ 174 (213)
|.++.. +.++.++|.....+++... ..++|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~ 348 (383)
T KOG0191|consen 304 GFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAI-VRGYPTI 348 (383)
T ss_pred ccchhHHHHHhccccccccceeeccccccccchhhHhh-hhcCcee
Confidence 333222 5667788877655444333 3455655
No 72
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.58 E-value=5.6e-15 Score=106.11 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=59.1
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCCCcc--ccEEEEEe-CCCCcccc
Q psy15246 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYKVSA--VPTFVILK-NLKPVDRV 89 (213)
Q Consensus 14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~I~~--~Pti~~~~-~g~~~~~~ 89 (213)
...++++++|.|||+||++|+.+.|.+.+....... ...|+.||.+.+. ....+|++.+ +||+++|. +|+.+.+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence 347789999999999999999999999997665433 3445566666543 4567899987 99999996 89887643
Q ss_pred c
Q psy15246 90 E 90 (213)
Q Consensus 90 ~ 90 (213)
.
T Consensus 94 ~ 94 (117)
T cd02959 94 I 94 (117)
T ss_pred c
Confidence 3
No 73
>PHA02125 thioredoxin-like protein
Probab=99.57 E-value=1.2e-14 Score=96.25 Aligned_cols=63 Identities=21% Similarity=0.482 Sum_probs=54.7
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP 94 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~ 94 (213)
++.|||+||++|+.+.|.++++. +.++.||.+++++++++|+|.++||++ +|+.+.+..|...
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence 68999999999999999997652 458899999999999999999999987 6777777888754
No 74
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.55 E-value=1.4e-14 Score=99.22 Aligned_cols=53 Identities=62% Similarity=1.130 Sum_probs=51.0
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCch
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLI 200 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~ 200 (213)
++|..+|+..+++.++.+++.++.+|+|+|||+|++|||+|++.+||++|+|.
T Consensus 38 i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~g~L~ 90 (90)
T cd03028 38 VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHESGELQ 90 (90)
T ss_pred CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHcCCcC
Confidence 79999999999999999999999999999999999999999999999999984
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=6.3e-14 Score=122.45 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=80.9
Q ss_pred eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-C-cEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-S-QVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
+..++...+.+ +...++.++|.|||+||++|+.+.|.++++++.+++ . ++.|+.+|++.+. +.. ++|+++||+++
T Consensus 348 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 348 VKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKF 425 (462)
T ss_pred cEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEE
Confidence 44555544444 457899999999999999999999999999999986 2 6999999999874 444 99999999999
Q ss_pred EeCCCCc--ccccC-CCchhHHHHHHHHhc
Q psy15246 80 LKNLKPV--DRVEG-ADPESLDKKLQNQAS 106 (213)
Q Consensus 80 ~~~g~~~--~~~~g-~~~~~l~~~i~~~~~ 106 (213)
|++|... ..+.| .+.++|.+||.+...
T Consensus 426 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 426 VPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 9988642 34455 444589999988853
No 76
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.52 E-value=9.8e-14 Score=93.40 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=36.7
Q ss_pred HHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246 162 REGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203 (213)
Q Consensus 162 ~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~ 203 (213)
++.+++..+.+++|++|++|+++||+|++.+++++|+|.++|
T Consensus 43 ~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l~~~~ 84 (84)
T TIGR02180 43 QDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKLAELL 84 (84)
T ss_pred HHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCChhhhC
Confidence 344555677889999999999999999999999999999876
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.51 E-value=1e-13 Score=109.96 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=68.5
Q ss_pred CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hH
Q psy15246 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SL 97 (213)
Q Consensus 19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l 97 (213)
...++.||++||++|+.+.+.+++++...+ ++.+..+|.+++++++++|+|.++||++++++|+. +.|..+. +|
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 344555999999999999999999998865 79999999999999999999999999999988763 5676665 78
Q ss_pred HHHHHH
Q psy15246 98 DKKLQN 103 (213)
Q Consensus 98 ~~~i~~ 103 (213)
.++|.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 888764
No 78
>KOG1731|consensus
Probab=99.50 E-value=1.9e-14 Score=124.36 Aligned_cols=105 Identities=19% Similarity=0.327 Sum_probs=79.6
Q ss_pred ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC--CchhHHHhCCCccccE
Q psy15246 2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE--DLPKLSLNYKVSAVPT 76 (213)
Q Consensus 2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~--~~~~l~~~~~I~~~Pt 76 (213)
++++|+.+.+...+ .+.+-.+|.||++|||||++++|+|+++++.+.. .-+.++.|||- +|..+|++|+|+++||
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPT 119 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCce
Confidence 47788775555554 5556899999999999999999999999998764 35889999996 5889999999999999
Q ss_pred EEEEeCCCCc----ccccCCCch-hHHHHHHHHhc
Q psy15246 77 FVILKNLKPV----DRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 77 i~~~~~g~~~----~~~~g~~~~-~l~~~i~~~~~ 106 (213)
+.+|..+..- ....|.... ++...+.+.+.
T Consensus 120 lryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 120 LRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred eeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 9999744211 223343433 56666665553
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.50 E-value=7.7e-14 Score=92.52 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=58.0
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc--hhHHHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP--ESLDKK 100 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~--~~l~~~ 100 (213)
|.||++||++|+.+.|.++++++++.. .+.+..+| +.+.+.+|+|.++||+++ +|+.+ ..|..+ ++|.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 789999999999999999999999986 68888887 345588999999999998 88766 556433 356655
Q ss_pred H
Q psy15246 101 L 101 (213)
Q Consensus 101 i 101 (213)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 4
No 80
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.50 E-value=2.5e-14 Score=99.62 Aligned_cols=60 Identities=27% Similarity=0.502 Sum_probs=53.5
Q ss_pred CCceEEeccCCHH---HHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCC
Q psy15246 148 VPYDTFDILQDQE---VREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP 207 (213)
Q Consensus 148 v~~~~~d~~~~~~---~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~ 207 (213)
++|..+|++.+++ .++.+.++++++|+|||||+|++|||+|++.+|+++|+|.++|+...
T Consensus 33 i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 33 VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISGSLVPMLKQAG 95 (99)
T ss_pred CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcCCHHHHHHHhC
Confidence 7889999988744 56678888899999999999999999999999999999999997654
No 81
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.50 E-value=4.8e-14 Score=104.54 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=57.6
Q ss_pred CCceEEeccCCHHHHHHHHhhcCC----CcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNW----PTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS 209 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~----pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~ 209 (213)
++|.++|+..+.+.+++|+++.+. +|+|||||+|++|||+|++.+||++|+|.++|++.|..
T Consensus 31 V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~e~G~L~~lL~~~~~~ 96 (147)
T cd03031 31 VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRAR 96 (147)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHHHcCCHHHHHhhcccc
Confidence 899999999999999999988764 99999999999999999999999999999999987654
No 82
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=120.47 Aligned_cols=91 Identities=20% Similarity=0.346 Sum_probs=75.0
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE----------------------------eCCCchhH
Q psy15246 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC----------------------------IAEDLPKL 65 (213)
Q Consensus 14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v----------------------------d~~~~~~l 65 (213)
.++++++++|+|||+||++|+++.|.+++++++++..++.++.| +++.+.++
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 35688999999999999999999999999999887435655544 33456779
Q ss_pred HHhCCCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246 66 SLNYKVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 66 ~~~~~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
++.|+|+++||++++ ++|+.+.+..|..+. +|.++|+..
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999766 589999988997776 788888843
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.47 E-value=9.1e-14 Score=98.72 Aligned_cols=85 Identities=28% Similarity=0.358 Sum_probs=63.4
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHH---HHHHcCCCcEEEEEEeCCCc--------------------hhHHHhCCCc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDE---MSKQSKYSQVVFARCIAEDL--------------------PKLSLNYKVS 72 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~---l~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~I~ 72 (213)
.+++++++.|+++||++|+++.+.+.. +...+.+ ++.++.++++.. .+++++++|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 468999999999999999999998885 4445544 677888887643 3589999999
Q ss_pred cccEEEEEe-CCCCcccccCCCch-hHHHHH
Q psy15246 73 AVPTFVILK-NLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 73 ~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i 101 (213)
++||++++. +|+.+.+..|..+. +|.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999996 89988888898776 676654
No 84
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.47 E-value=3e-13 Score=97.79 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=64.3
Q ss_pred hhhhhcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCCchhHHHh--------CCCccccEEEE
Q psy15246 11 DVEKYGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAEDLPKLSLN--------YKVSAVPTFVI 79 (213)
Q Consensus 11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~--------~~I~~~Pti~~ 79 (213)
..+..+++++++|.|+|+||+.|+.|.+. | .++++.+.. ++.++++|.++.++++++ |++.++||+++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 34456889999999999999999999873 4 356666544 799999999998888763 58999999999
Q ss_pred Ee-CCCCcccccCC
Q psy15246 80 LK-NLKPVDRVEGA 92 (213)
Q Consensus 80 ~~-~g~~~~~~~g~ 92 (213)
+. +|+++...++.
T Consensus 87 l~~~G~~~~~~~~~ 100 (124)
T cd02955 87 LTPDLKPFFGGTYF 100 (124)
T ss_pred ECCCCCEEeeeeec
Confidence 96 78877655443
No 85
>PHA03050 glutaredoxin; Provisional
Probab=99.46 E-value=7.7e-14 Score=98.52 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=54.8
Q ss_pred CceEEeccC---CHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246 149 PYDTFDILQ---DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS 208 (213)
Q Consensus 149 ~~~~~d~~~---~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~ 208 (213)
.|..+|++. +.+.++++++.+|..|+|+|||+|++|||+|++.+|+++|+|.++|+....
T Consensus 42 ~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 42 AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 688889986 578899999999999999999999999999999999999999999986543
No 86
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.45 E-value=2.2e-13 Score=93.19 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=53.5
Q ss_pred CCceEEeccCCHHHHHHHHhhcC----CCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSN----WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~----~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~ 204 (213)
++|.++|++.+++.++++.+.++ .+|+|||||+|++|||+|++.+|+++|+|.++|+
T Consensus 31 I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~e~g~L~~lLk 91 (92)
T cd03030 31 IEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAKENNTLEEFLK 91 (92)
T ss_pred CceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHHhCCCHHHHhC
Confidence 89999999999999999998865 4999999999999999999999999999999985
No 87
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.44 E-value=6.3e-13 Score=119.11 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=72.9
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEEEEe-CCCCc-
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFVILK-NLKPV- 86 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~~~~-~g~~~- 86 (213)
.++++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|.++ +.+++++|+|.++||+++|+ +|+.+
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 4578999999999999999998875 67777777 68999999985 46899999999999999997 78873
Q ss_pred -ccccCCCch-hHHHHHHHH
Q psy15246 87 -DRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 87 -~~~~g~~~~-~l~~~i~~~ 104 (213)
.+..|.... ++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 577786554 788888875
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=5.3e-13 Score=86.12 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=53.4
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
++.|+++||++|+++.+.++++++..+ ++.+..+|.+++++++++|++.++||+++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 678999999999999999999988765 79999999999999999999999999865 454
No 89
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.41 E-value=1.7e-12 Score=106.16 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=68.2
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------chhHHHhCCCccccEEEEEeC-CCCc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------LPKLSLNYKVSAVPTFVILKN-LKPV 86 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------~~~l~~~~~I~~~Pti~~~~~-g~~~ 86 (213)
.+++++|.|||+||++|+++.|.++++++++.- .+..+.+|.+. +..++++++|.++||++++++ |+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~-~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI-EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc-EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 478999999999999999999999999999863 34444444321 457899999999999999986 6555
Q ss_pred cc-ccCCCch-hHHHHHHHHh
Q psy15246 87 DR-VEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 87 ~~-~~g~~~~-~l~~~i~~~~ 105 (213)
.. ..|..+. +|.+.|....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 43 3476555 7888887765
No 90
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.40 E-value=1.6e-12 Score=95.04 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=58.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCc------------------------hhHHHhCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDL------------------------PKLSLNYK 70 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~------------------------~~l~~~~~ 70 (213)
.+++++|+||++||++|+++.|.+.++.+++.+ .++.++.|+.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999888763 2566666665532 45788999
Q ss_pred CccccEEEEEe-CCCCcc
Q psy15246 71 VSAVPTFVILK-NLKPVD 87 (213)
Q Consensus 71 I~~~Pti~~~~-~g~~~~ 87 (213)
|.++|++++++ +|+.+.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999997 777554
No 91
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.39 E-value=4.2e-12 Score=96.94 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=73.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------CchhHHHhCCCccc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------DLPKLSLNYKVSAV 74 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~~~~l~~~~~I~~~ 74 (213)
.+++++|.||++||++|++..+.+.++.+++++.++.++.|+++ .+.+++++|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 57899999999999999999999999999998645888888865 34578899999999
Q ss_pred cEEEEEe-CCCCcccccCCCch-hHHHHHHHH
Q psy15246 75 PTFVILK-NLKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 75 Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
|+++++. +|+.+....|.... ++.+++++.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9988886 77777677776665 677777653
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.39 E-value=1.9e-12 Score=94.86 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=57.9
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCCc-------------------------hhHHHhC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAEDL-------------------------PKLSLNY 69 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~~-------------------------~~l~~~~ 69 (213)
++++++|.||++||++|+...|.++++.+.+++. ++.++.|+.+.. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5799999999999999999999999998887752 567777766542 2466789
Q ss_pred CCccccEEEEEe-CCCCcc
Q psy15246 70 KVSAVPTFVILK-NLKPVD 87 (213)
Q Consensus 70 ~I~~~Pti~~~~-~g~~~~ 87 (213)
+|.++||+++++ +|+.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999997 676554
No 93
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.39 E-value=2.1e-12 Score=95.90 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-------CcEEEEEEeCCCc-------------------------hh
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-------SQVVFARCIAEDL-------------------------PK 64 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-------~~v~~~~vd~~~~-------------------------~~ 64 (213)
++++++|+|||+||++|++..|.+.++.+++.+ .++.++.|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 589999999999999999999999998765542 2478888876522 24
Q ss_pred HHHhCCCccccEEEEEe-CCCCcc
Q psy15246 65 LSLNYKVSAVPTFVILK-NLKPVD 87 (213)
Q Consensus 65 l~~~~~I~~~Pti~~~~-~g~~~~ 87 (213)
++++|+|.++||.+++. +|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 77899999999999997 777654
No 94
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.38 E-value=4.5e-12 Score=94.99 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=63.3
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------chhHH-HhC---CCccccEEEEE
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------LPKLS-LNY---KVSAVPTFVIL 80 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------~~~l~-~~~---~I~~~Pti~~~ 80 (213)
...++..+|+|||+||++|++..|.++++++++.- .+..+.+|-.. ..+.. ..| ++.++||.+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~-~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL-PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcCC-cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 34567779999999999999999999999998853 34444444221 12333 345 88999999999
Q ss_pred e-CCCC-cccccCCCch-hHHHHHHHH
Q psy15246 81 K-NLKP-VDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 81 ~-~g~~-~~~~~g~~~~-~l~~~i~~~ 104 (213)
+ +|+. .....|..+. ++.+.|++.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 7 5554 4456776665 688877765
No 95
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.38 E-value=3.9e-12 Score=98.54 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=68.8
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCC
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKV 71 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I 71 (213)
..++++++|+|||+||++|++..|.+.++.+. ++.++.|+.++. ..+++.|+|
T Consensus 65 ~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 65 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 34689999999999999999999999998652 466777765432 235568999
Q ss_pred ccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 72 SAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 72 ~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.++|+.++++ +|+...+..|.... ++.+.|+..++
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999777775 89888888887666 68888887764
No 96
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.35 E-value=4e-12 Score=92.34 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-----------------------CCCchhHHHhCCCcc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-----------------------AEDLPKLSLNYKVSA 73 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~I~~ 73 (213)
++++++|+||++||++|+++.|.++++.+.+. +.++.|+ ++.+..+++.|++.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 57899999999999999999999999988763 4455444 345667889999999
Q ss_pred ccEEEEE-eCCCCcccccCCCch
Q psy15246 74 VPTFVIL-KNLKPVDRVEGADPE 95 (213)
Q Consensus 74 ~Pti~~~-~~g~~~~~~~g~~~~ 95 (213)
+|+.+++ ++|+.+.++.|..++
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred CCeEEEECCCceEEEEEeccCCh
Confidence 9966666 589888888886655
No 97
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.34 E-value=1.2e-11 Score=85.21 Aligned_cols=67 Identities=27% Similarity=0.482 Sum_probs=54.7
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCc-------------------------hhHHHhCCC
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDL-------------------------PKLSLNYKV 71 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~-------------------------~~l~~~~~I 71 (213)
+++++|+|||+||++|++..|.+.++.+.++ +.++.++.|..++. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 34788888887632 347889999
Q ss_pred ccccEEEEEe-CCC
Q psy15246 72 SAVPTFVILK-NLK 84 (213)
Q Consensus 72 ~~~Pti~~~~-~g~ 84 (213)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999997 443
No 98
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.34 E-value=6.4e-12 Score=90.58 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=63.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe---------------------CCCchhHHHhCCCccc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI---------------------AEDLPKLSLNYKVSAV 74 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd---------------------~~~~~~l~~~~~I~~~ 74 (213)
..+++++|.||++||++|+.+.|.+.++++.+. +..+.+| .+.+.+++++|+|.++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence 456899999999999999999999999988754 2222222 2355689999999999
Q ss_pred cEEEEEeCCCCcccccCCCch-hHHH
Q psy15246 75 PTFVILKNLKPVDRVEGADPE-SLDK 99 (213)
Q Consensus 75 Pti~~~~~g~~~~~~~g~~~~-~l~~ 99 (213)
|+++++.+|+......|..+. +|.+
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 999999866666777787766 4554
No 99
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.34 E-value=3.1e-12 Score=85.30 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=53.4
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~ 203 (213)
+.|..+|++.+++.++++.+.++++++|+|||+|+++||++++.+++++|+|.++|
T Consensus 24 i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 24 VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 78999999999999999998999999999999999999999999999999999876
No 100
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.34 E-value=1.3e-11 Score=89.54 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=81.0
Q ss_pred hhhhhcCCCeEEEEEEc--CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246 11 DVEKYGKDKTAVVHFYA--DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR 88 (213)
Q Consensus 11 ~~~~~~~~~~~vV~F~a--~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~ 88 (213)
....++..+..+|.|-. .-++.+....-.+++++++|++.++.+++||++++++++.+|||+++||+++|++|+.+.+
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEE
Confidence 33445666666666654 3567888888899999999985359999999999999999999999999999999999999
Q ss_pred ccCCCch-hHHHHHHHHhc
Q psy15246 89 VEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 89 ~~g~~~~-~l~~~i~~~~~ 106 (213)
..|..+. ++.++|++++.
T Consensus 107 i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 107 LNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EeCcCCHHHHHHHHHHHhc
Confidence 9998776 79999999875
No 101
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.34 E-value=1e-11 Score=95.25 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=68.6
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------CCchhHHHhCCC
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------EDLPKLSLNYKV 71 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~I 71 (213)
..++++++|+||++||++|+++.|.++++.+. ++.++.|+. +.+.+++++|++
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 34689999999999999999999999988763 344444443 344567889999
Q ss_pred ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.++|+.+++ ++|+.+.++.|.... ++.++++++++
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 999976666 589988888886555 78999888764
No 102
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.33 E-value=8.6e-12 Score=87.71 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=65.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCCcc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKVSA 73 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I~~ 73 (213)
.+++++|.||++||++|+...+.+.++.+.+...++.++.|+++.+ ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3789999999999999999999999999999643799999999886 78999999999
Q ss_pred ccEEEEEe-CCCCcccccC
Q psy15246 74 VPTFVILK-NLKPVDRVEG 91 (213)
Q Consensus 74 ~Pti~~~~-~g~~~~~~~g 91 (213)
+|+++++. +|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999996 7776665543
No 103
>PRK10638 glutaredoxin 3; Provisional
Probab=99.31 E-value=6.3e-12 Score=84.72 Aligned_cols=57 Identities=30% Similarity=0.439 Sum_probs=53.8
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~ 204 (213)
++|..+|++.+++.++.+.+.+++.++|+||++|+++||+|++++|+++|+|.++|+
T Consensus 27 i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~~~~ 83 (83)
T PRK10638 27 VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK 83 (83)
T ss_pred CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHHHhC
Confidence 789999999988888899999999999999999999999999999999999999874
No 104
>KOG1752|consensus
Probab=99.30 E-value=5.4e-12 Score=87.93 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=48.8
Q ss_pred eEEeccCC-HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246 151 DTFDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP 206 (213)
Q Consensus 151 ~~~d~~~~-~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~ 206 (213)
.++|-..+ .+++..|.+.++.+|+|++||+|+||||++++.+||.+|+|.++|+..
T Consensus 44 vELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~G~L~~~l~~~ 100 (104)
T KOG1752|consen 44 VELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKSGELVPLLKEA 100 (104)
T ss_pred EEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHcCCHHHHHHHh
Confidence 34444444 689999999999999999999999999999999999999999999754
No 105
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.30 E-value=1.3e-11 Score=84.17 Aligned_cols=67 Identities=7% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD 87 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~ 87 (213)
.+..-+..|+++||++|....+.++++++.++ ++.+..+|.++.++++.+|+|.++||+++ +|+.+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 34556888999999999999999999999887 79999999999999999999999999964 787554
No 106
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=1.3e-11 Score=117.46 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------------CCchhHHHhC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------------EDLPKLSLNY 69 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~ 69 (213)
++++++|+|||+||++|++..|.++++.+++++.++.++.|.. +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999864577777732 2244678899
Q ss_pred CCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 70 KVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 70 ~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
+|.++|+++++ ++|+.+.+..|.... +|.++|+..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 599998888887665 68888887764
No 107
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.29 E-value=3.2e-11 Score=81.61 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=31.8
Q ss_pred EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
-++.|+.+||++|++....++++..++. ++.+..+|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCC
Confidence 3678999999999999999999887665 577777776653
No 108
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.24 E-value=5.4e-11 Score=86.38 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=62.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHHhC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSLNY 69 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~~ 69 (213)
++++++|.||++||++|++..|.++++.+++++.++.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 67899999999999999999999999999998656888877541 233567889
Q ss_pred CCccccEEEEEe-CCCCcccccC
Q psy15246 70 KVSAVPTFVILK-NLKPVDRVEG 91 (213)
Q Consensus 70 ~I~~~Pti~~~~-~g~~~~~~~g 91 (213)
++.++|+++++. +|+.+....|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 999999999995 7877766655
No 109
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.23 E-value=6.1e-11 Score=80.43 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=25.0
Q ss_pred CcccceEeCCeEeehHHHHHHHHHcCC
Q psy15246 172 PTYPQVYVNTELIGGLDIIKELQVANK 198 (213)
Q Consensus 172 pt~p~i~i~g~~~gg~d~~~~~~~~~~ 198 (213)
.|+|+|||+|+++||+|++.++++++.
T Consensus 56 ~tVP~ifi~g~~igG~~dl~~~~~~~~ 82 (86)
T TIGR02183 56 ETVPQIFVDEKHVGGCTDFEQLVKENF 82 (86)
T ss_pred CCcCeEEECCEEecCHHHHHHHHHhcc
Confidence 689999999999999999999998863
No 110
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.20 E-value=1.6e-10 Score=82.48 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=74.0
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHH-HH--HHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCccccEEEEEe--CCCCcc
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNT-LF--DEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSAVPTFVILK--NLKPVD 87 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~-~~--~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~~Pti~~~~--~g~~~~ 87 (213)
.+++++++|+|+++||++|+.|.. .| +++.+.+.. +..+..+|.+ +...+++.|++.++|+++++. +|+.+.
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 467899999999999999999976 34 445666654 6888888887 466899999999999999996 588899
Q ss_pred cccCCCch-hHHHHHHHHh
Q psy15246 88 RVEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 88 ~~~g~~~~-~l~~~i~~~~ 105 (213)
+..|.... ++...|++..
T Consensus 93 ~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 93 VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 99998776 6888887764
No 111
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.15 E-value=5.1e-11 Score=79.74 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=47.3
Q ss_pred CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhh
Q psy15246 148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPT 202 (213)
Q Consensus 148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~ 202 (213)
+.|..+++..+ .+++..++++++++++|++|++|+++||++++.++.++|+|.++
T Consensus 25 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~~~ 82 (82)
T cd03419 25 VKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLVKL 82 (82)
T ss_pred CCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCccCC
Confidence 56666666654 55677898999999999999999999999999999999999864
No 112
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.14 E-value=3.9e-10 Score=86.26 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=62.7
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------chhHHHhCCC--ccccEEEEEe-CCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------LPKLSLNYKV--SAVPTFVILK-NLKP 85 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~I--~~~Pti~~~~-~g~~ 85 (213)
+|.||++||++|++..|.+++++++++ +.++.|+.+. ...+.+.|++ .++||.++++ +|+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 778999999999999999999999986 4444444432 2336778995 6999999995 7776
Q ss_pred c-ccccCCCch-hHHHHHHHHhc
Q psy15246 86 V-DRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 86 ~-~~~~g~~~~-~l~~~i~~~~~ 106 (213)
. ....|..+. +|.+.|++.++
T Consensus 150 ~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 150 ALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHHHh
Confidence 4 456676665 78888888874
No 113
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.14 E-value=3.2e-10 Score=84.17 Aligned_cols=79 Identities=27% Similarity=0.409 Sum_probs=64.7
Q ss_pred cCCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc-
Q psy15246 16 GKDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS- 72 (213)
Q Consensus 16 ~~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~- 72 (213)
-++++++|.||++ ||++|+...|.+.++.+.+++.++.++.|..+ ....+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4689999999999 99999999999999998877546777777644 345688999998
Q ss_pred --------cccEEEEEe-CCCCcccccCCCc
Q psy15246 73 --------AVPTFVILK-NLKPVDRVEGADP 94 (213)
Q Consensus 73 --------~~Pti~~~~-~g~~~~~~~g~~~ 94 (213)
++|+++++. +|+.+.+..|...
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 999988775 8887777777655
No 114
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.14 E-value=1.9e-10 Score=83.33 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=54.0
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCccccc
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPVDRVE 90 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~ 90 (213)
-+++++++|.|+++||++|+.|.... .++.+.... ++.++.++.+....-....+ .++||++|+. +|+.+.+..
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~ 97 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADIT 97 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccccc
Confidence 47899999999999999999998864 334454533 56666777652211111234 6899999996 788887777
Q ss_pred CCC
Q psy15246 91 GAD 93 (213)
Q Consensus 91 g~~ 93 (213)
|..
T Consensus 98 Gy~ 100 (130)
T cd02960 98 GRY 100 (130)
T ss_pred ccc
Confidence 754
No 115
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.13 E-value=1e-10 Score=83.10 Aligned_cols=60 Identities=8% Similarity=0.165 Sum_probs=44.4
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE---eCCCchhHHHhCCCccccEE
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC---IAEDLPKLSLNYKVSAVPTF 77 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v---d~~~~~~l~~~~~I~~~Pti 77 (213)
++++++|.||++||++|+++.|.++++.+.+.+ ++.++.+ +.++..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 478999999999999999999999999888865 5666655 22233345556666556654
No 116
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.13 E-value=4.8e-11 Score=78.35 Aligned_cols=48 Identities=29% Similarity=0.465 Sum_probs=45.3
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV 195 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~ 195 (213)
++|..+|+..+++.++++++.++..++|++|+||++|||+|++++|++
T Consensus 26 i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 26 LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 899999999999999999999999999999999999999999999864
No 117
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.11 E-value=2.1e-10 Score=75.48 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=46.3
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCC-cccceEeCCeEeehHHHHHHHHHcC
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWP-TYPQVYVNTELIGGLDIIKELQVAN 197 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~p-t~p~i~i~g~~~gg~d~~~~~~~~~ 197 (213)
++|..+|++.+++.++.+.+..+++ ++|+||++|+++||+|++.+|+++|
T Consensus 25 i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 25 VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 8999999999988888888778877 9999999999999999999999987
No 118
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.09 E-value=4.3e-10 Score=88.08 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------CchhHHHhCCC--------------
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------DLPKLSLNYKV-------------- 71 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~I-------------- 71 (213)
.+++++|.|||+||++|++..|.+.++.+++++.++.++.|+++ +....++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 57899999999999999999999999999998656899999763 12234444443
Q ss_pred ----------------------cccc---EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 72 ----------------------SAVP---TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 72 ----------------------~~~P---ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.++| +..++ ++|+.+.++.|.... ++.+.|+++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 33344 688888888886665 78888888875
No 119
>KOG0914|consensus
Probab=99.08 E-value=2.3e-10 Score=88.23 Aligned_cols=85 Identities=24% Similarity=0.529 Sum_probs=73.3
Q ss_pred chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc------cccEEEEE
Q psy15246 9 ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS------AVPTFVIL 80 (213)
Q Consensus 9 ~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~------~~Pti~~~ 80 (213)
+..++.+ +....|+|.|+|.|.+.|+.+.|.+.+++.+|....+.|++||+..-++.+.+|+|. ..||+++|
T Consensus 133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilF 212 (265)
T KOG0914|consen 133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILF 212 (265)
T ss_pred hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEE
Confidence 3334444 567789999999999999999999999999999768999999999999999999886 58999999
Q ss_pred eCCCCcccccCCC
Q psy15246 81 KNLKPVDRVEGAD 93 (213)
Q Consensus 81 ~~g~~~~~~~g~~ 93 (213)
.+|+++.|....+
T Consensus 213 q~gkE~~RrP~vd 225 (265)
T KOG0914|consen 213 QKGKEVSRRPDVD 225 (265)
T ss_pred ccchhhhcCcccc
Confidence 9999887765443
No 120
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.07 E-value=1.1e-09 Score=85.24 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=60.7
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------CCchhHHHhCCCccccEEE
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------EDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~I~~~Pti~ 78 (213)
.+++++|.||++||++|++..|.+.++.+.... ++.++..|. ....++++.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~-~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET-DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 678999999999999999999999998876542 455444220 1145678899999999888
Q ss_pred EEe-CCCCcccccCCCc-hhHHHHHHHH
Q psy15246 79 ILK-NLKPVDRVEGADP-ESLDKKLQNQ 104 (213)
Q Consensus 79 ~~~-~g~~~~~~~g~~~-~~l~~~i~~~ 104 (213)
+++ +|+...+ ..... +.+.+.++..
T Consensus 152 lID~~G~I~~~-g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDGKIRAK-GLTNTREHLESLLEAD 178 (189)
T ss_pred EECCCCeEEEc-cCCCCHHHHHHHHHHH
Confidence 876 7765543 22233 3566666544
No 121
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.06 E-value=2.4e-10 Score=76.71 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=50.9
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 14 KYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
..+++++++|.|+++||++|+.|...+ .++.+.+.. ++.++.+|.+......... ..++|+++++.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~-~~~~P~~~~ld 81 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFD-RQGYPTFFFLD 81 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHH-HCSSSEEEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhC-CccCCEEEEeC
Confidence 347899999999999999999999877 445553443 7999999998765544322 27799999985
No 122
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.05 E-value=3.3e-09 Score=80.96 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=71.5
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------chhH
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------------LPKL 65 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------------~~~l 65 (213)
+..++++||.||++||+.|.+..+.+.++.+++++.++.++.|..+. +..+
T Consensus 22 ~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 22 FADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred HhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 44789999999999999999999999999999985468888887643 2346
Q ss_pred HHhCCCccccEEEEEe-CCCCcccc------cC----CCchhHHHHHHHHhcc
Q psy15246 66 SLNYKVSAVPTFVILK-NLKPVDRV------EG----ADPESLDKKLQNQAST 107 (213)
Q Consensus 66 ~~~~~I~~~Pti~~~~-~g~~~~~~------~g----~~~~~l~~~i~~~~~~ 107 (213)
++.|+|...|+++++. +|+.+... .+ .+..++.+.|+..+..
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 7789999999999996 67655331 11 1224689999888753
No 123
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.03 E-value=1.7e-09 Score=86.53 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------c---hhHH-HhCC--------------
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------L---PKLS-LNYK-------------- 70 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~-------------- 70 (213)
.+++++|.|||+||++|....|.++++.+++++.++.++.|+++. . .+.+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 578999999999999999999999999999986568888888631 1 1222 2221
Q ss_pred --------------------CccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 71 --------------------VSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 71 --------------------I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
|...|+..++. +|+.+.++.|.... +|++.|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12347777774 88988888887665 78888888764
No 124
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.03 E-value=1.7e-09 Score=75.61 Aligned_cols=73 Identities=27% Similarity=0.576 Sum_probs=65.5
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCC--CccccEEEEEeCCCCcccccC
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYK--VSAVPTFVILKNLKPVDRVEG 91 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~--I~~~Pti~~~~~g~~~~~~~g 91 (213)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ...++...|+ +..+|++.++.+|.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 77999999999999999999999999999986 6899999997 8899999999 999999999988876555555
No 125
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=1.8e-09 Score=70.22 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=53.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCcccccCCCchhH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l 97 (213)
+..|+++||++|+++.+.+++ . ++.+..+|++.+++ +.+.+++.++|++++. |+. ..|.++++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~--~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K--GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C--CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHH
Confidence 467999999999999988876 2 57788889887654 5567999999999874 543 667777777
Q ss_pred HHHH
Q psy15246 98 DKKL 101 (213)
Q Consensus 98 ~~~i 101 (213)
.++|
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 7765
No 126
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.97 E-value=2.5e-09 Score=93.85 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred hhhhcCCC--eEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEe-
Q psy15246 12 VEKYGKDK--TAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILK- 81 (213)
Q Consensus 12 ~~~~~~~~--~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~- 81 (213)
++.+++++ +++|+|||+||-.||.+.+.. .+...+.+ ++.+.++|.+++ .++.++|++-++|++++|.
T Consensus 466 ~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~ 543 (569)
T COG4232 466 DQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGP 543 (569)
T ss_pred HHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 33444454 999999999999999998854 23444555 799999998864 4688999999999999998
Q ss_pred CCCCcccccCCCch-hHHHHHHHH
Q psy15246 82 NLKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 82 ~g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
+|++.....|+... .+.+++++.
T Consensus 544 ~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 544 QGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCcCcCCcceecHHHHHHHHHHh
Confidence 77776668887777 588888765
No 127
>smart00594 UAS UAS domain.
Probab=98.97 E-value=5e-09 Score=75.69 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=65.6
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe-CC-----
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK-NL----- 83 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~-~g----- 83 (213)
.+.+|+++|+|+++||+.|+.+... | .++.+.+.. ++.+..+|.+. ..+++++|++.++|+++++. +|
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 3678899999999999999999875 3 445555654 68888888764 56799999999999999996 44
Q ss_pred CCcccccCCCch-hHHHHH
Q psy15246 84 KPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 84 ~~~~~~~g~~~~-~l~~~i 101 (213)
..+.+..|.... +|...+
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 246677786665 566554
No 128
>PLN02412 probable glutathione peroxidase
Probab=98.96 E-value=4.2e-09 Score=80.25 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=65.7
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--------CchhH----HHhCC--------------
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--------DLPKL----SLNYK-------------- 70 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--------~~~~l----~~~~~-------------- 70 (213)
.+++++|.||++||++|++..|.+.++.+++++.++.++.|+++ ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 57899999999999999999999999999999756888888763 11122 22222
Q ss_pred --------------------CccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 71 --------------------VSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 71 --------------------I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
|...|+..++ ++|+.+.++.|.... ++...|+.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3335666666 477777777776655 67777777764
No 129
>KOG1672|consensus
Probab=98.96 E-value=1.4e-09 Score=82.62 Aligned_cols=91 Identities=26% Similarity=0.359 Sum_probs=80.7
Q ss_pred ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246 2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
...++.+ ..+++...+...++++||-|.-..|+-|...++.||+.+- ...|++||+...|=++.+++|..+|++++|
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence 3456665 4455666788899999999999999999999999999999 699999999999999999999999999999
Q ss_pred eCCCCcccccCCCc
Q psy15246 81 KNLKPVDRVEGADP 94 (213)
Q Consensus 81 ~~g~~~~~~~g~~~ 94 (213)
++|+...++.|+..
T Consensus 145 k~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 145 KNGKTVDYVVGFTD 158 (211)
T ss_pred EcCEEEEEEeeHhh
Confidence 99999988888653
No 130
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.96 E-value=2.5e-09 Score=86.97 Aligned_cols=99 Identities=25% Similarity=0.355 Sum_probs=73.2
Q ss_pred eEEeCC-chhhhhhc---CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 3 VVQISE-ELDVEKYG---KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 3 v~~l~~-~~~~~~~~---~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
|.+|++ +.+.+.+. .+..|||+||.+.++.|..|...|..||..|+ .++|++|.++..+ +..+|.+..+||++
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC-cccCCcccCCCEEE
Confidence 567766 55555553 35579999999999999999999999999999 7999999998765 78899999999999
Q ss_pred EEeCCCCcccccCCC--------chhHHHHHHHH
Q psy15246 79 ILKNLKPVDRVEGAD--------PESLDKKLQNQ 104 (213)
Q Consensus 79 ~~~~g~~~~~~~g~~--------~~~l~~~i~~~ 104 (213)
+|++|..+..+.|.. ..+|..+|.++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999997666554432 22566666654
No 131
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-09 Score=72.22 Aligned_cols=52 Identities=33% Similarity=0.532 Sum_probs=46.7
Q ss_pred CCceEEeccCCH--HHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCc
Q psy15246 148 VPYDTFDILQDQ--EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199 (213)
Q Consensus 148 v~~~~~d~~~~~--~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l 199 (213)
+.|..+|+..+. +.+..+++.+|..|+|||||+|+++||++++.++++.|.|
T Consensus 26 ~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 26 VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 799999999886 6667777777999999999999999999999999999876
No 132
>KOG2824|consensus
Probab=98.91 E-value=1.2e-09 Score=87.24 Aligned_cols=70 Identities=31% Similarity=0.404 Sum_probs=60.8
Q ss_pred hhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcC----CCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246 131 VREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSN----WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP 206 (213)
Q Consensus 131 ~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~----~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~ 206 (213)
+|.++..|. |.|.+-|+..|...+++|++..+ .+++|++||+|.+|||.+++.+|++.|+|.++|++.
T Consensus 153 VR~ilesf~--------V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 153 VRAILESFR--------VKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred HHHHHHhCc--------eEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence 455665554 89999999999888888887654 588999999999999999999999999999999999
Q ss_pred CC
Q psy15246 207 PS 208 (213)
Q Consensus 207 ~~ 208 (213)
|-
T Consensus 225 p~ 226 (281)
T KOG2824|consen 225 PC 226 (281)
T ss_pred CC
Confidence 83
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.91 E-value=6.3e-09 Score=68.47 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=50.4
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh-----CCCccccEEEEEeCCCCcccccCCCchh
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN-----YKVSAVPTFVILKNLKPVDRVEGADPES 96 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~-----~~I~~~Pti~~~~~g~~~~~~~g~~~~~ 96 (213)
++.||++||++|+++++.++++ ++.+-.+|+++++..... +++.++|++ ++.+|+.+. .....+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHH
Confidence 5689999999999999998775 344556888877766655 389999997 577776433 444445
Q ss_pred HHHHHH
Q psy15246 97 LDKKLQ 102 (213)
Q Consensus 97 l~~~i~ 102 (213)
+.+.++
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 655543
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.85 E-value=1.7e-08 Score=62.68 Aligned_cols=60 Identities=28% Similarity=0.514 Sum_probs=51.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH---hCCCccccEEEEEeCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL---NYKVSAVPTFVILKNL 83 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~---~~~I~~~Pti~~~~~g 83 (213)
++.||++||++|+++.+.+.++ +.... ++.+..+|++...+... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 79999999998877665 8999999999999877
No 135
>KOG0913|consensus
Probab=98.85 E-value=1.2e-09 Score=85.19 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=81.4
Q ss_pred EEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC
Q psy15246 4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL 83 (213)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g 83 (213)
+.+++++..+.+ .+-+++.|+|||||.|+...|.|+.++.--.+..|.++.||.+.++.+.-+|-|...|||.-.++|
T Consensus 27 ~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 27 TRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred EEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence 455565555543 467899999999999999999999998876666799999999999999999999999999999999
Q ss_pred CCcccccCCCchhHHHHHHHH
Q psy15246 84 KPVDRVEGADPESLDKKLQNQ 104 (213)
Q Consensus 84 ~~~~~~~g~~~~~l~~~i~~~ 104 (213)
..-.+.+.++..++..|+...
T Consensus 105 eFrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 105 EFRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ccccccCcccchhHHHHHHhh
Confidence 865544445555888888754
No 136
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.83 E-value=1.2e-08 Score=78.57 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHH-cCCCcE-EEEEEeCC-----------------------------CchhH
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQV-VFARCIAE-----------------------------DLPKL 65 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~-~~~~~v-~~~~vd~~-----------------------------~~~~l 65 (213)
.++..+|+|||.||++|+.-.|.++++.++ ++-++. ....||.+ ....+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999999653 331010 01334433 23346
Q ss_pred HHhCCCccccEE-EEE-eCCCCcccccCCCch-hHHH
Q psy15246 66 SLNYKVSAVPTF-VIL-KNLKPVDRVEGADPE-SLDK 99 (213)
Q Consensus 66 ~~~~~I~~~Pti-~~~-~~g~~~~~~~g~~~~-~l~~ 99 (213)
+.+|++.++|+. +++ ++|+...+..|.... ++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 779999999876 566 488988888897655 5555
No 137
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.3e-08 Score=72.08 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=69.4
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCC----------------CchhHHHhCCCccc
Q psy15246 14 KYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAE----------------DLPKLSLNYKVSAV 74 (213)
Q Consensus 14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~----------------~~~~l~~~~~I~~~ 74 (213)
+...++..++.|.++.|+.|.+++..+ .++.+.+.+ ++.++.+++. ...++++.|+|+++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 346789999999999999999998865 456666665 6778888754 23489999999999
Q ss_pred cEEEEEe-CCCCcccccCCCch-hHHHHH
Q psy15246 75 PTFVILK-NLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 75 Pti~~~~-~g~~~~~~~g~~~~-~l~~~i 101 (213)
||+++|+ +|+.+....|+.+. ++...+
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 9999997 78999999998887 444433
No 138
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.81 E-value=2.6e-08 Score=74.74 Aligned_cols=43 Identities=12% Similarity=0.011 Sum_probs=39.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~ 59 (213)
.+++++|.|||+||++|++..|.+.++.+++++.++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 5788999999999999999999999999999865799998885
No 139
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.81 E-value=1.3e-08 Score=76.24 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=38.3
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
.+++++|.|||+||+ |+...|.++++.+++++.++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998657888888753
No 140
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.79 E-value=6.6e-09 Score=67.04 Aligned_cols=48 Identities=48% Similarity=0.902 Sum_probs=44.8
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV 195 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~ 195 (213)
++|..+|+..+++.++.+++.++++++|++|++|+++||++++.+|++
T Consensus 25 i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 25 IEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence 789999999998899999999999999999999999999999999863
No 141
>KOG2501|consensus
Probab=98.77 E-value=1.3e-08 Score=75.38 Aligned_cols=71 Identities=24% Similarity=0.451 Sum_probs=54.6
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCC-------------------------chhHHHhC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAED-------------------------LPKLSLNY 69 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~-------------------------~~~l~~~~ 69 (213)
.++.+.++|.|.||++|+++-|.+.++.++.... .+-++-|+.|. ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5699999999999999999999988887776641 24444454431 24578899
Q ss_pred CCccccEEEEEe-CCCCcc
Q psy15246 70 KVSAVPTFVILK-NLKPVD 87 (213)
Q Consensus 70 ~I~~~Pti~~~~-~g~~~~ 87 (213)
+|.++|++++.+ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999886 776554
No 142
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.75 E-value=3.3e-08 Score=72.61 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCccc
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSAV 74 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~~ 74 (213)
.+++++|.|| +.||+.|....+.+.++.+.+.+.++.++.|..+ ....+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 5899999999999999998887546777777643 33457888999988
Q ss_pred ---------cEEEEEe-CCCCcccccCCCch-hHHH
Q psy15246 75 ---------PTFVILK-NLKPVDRVEGADPE-SLDK 99 (213)
Q Consensus 75 ---------Pti~~~~-~g~~~~~~~g~~~~-~l~~ 99 (213)
|++++++ +|+....+.|.... ++.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 8888886 68887777777655 3443
No 143
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.74 E-value=2.1e-08 Score=65.41 Aligned_cols=46 Identities=28% Similarity=0.493 Sum_probs=40.2
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~ 194 (213)
++|..+|++.+.+ ...++..++..++|+||++|+++||+|++.++.
T Consensus 26 i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 26 ISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred CCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 7899999998774 456777889999999999999999999999874
No 144
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.73 E-value=9.7e-08 Score=68.53 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=57.4
Q ss_pred CCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc--
Q psy15246 17 KDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS-- 72 (213)
Q Consensus 17 ~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~-- 72 (213)
.+++++|.||+. ||++|+...+.++++.++++..++.++.|..+ .+.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 99999999999999999988657899988865 344578888888
Q ss_pred ----cccEEEEEeCCC
Q psy15246 73 ----AVPTFVILKNLK 84 (213)
Q Consensus 73 ----~~Pti~~~~~g~ 84 (213)
.+|++.++..+.
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 889888887443
No 145
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.69 E-value=3.1e-08 Score=68.39 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=45.8
Q ss_pred CCceEEeccCCHHHHHHHHhhc---------CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246 148 VPYDTFDILQDQEVREGLKIYS---------NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~---------~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~ 205 (213)
++|..+|+..+++.++.+++.. +.|-.||||++++++|++|++.++.|+|.|.++|+-
T Consensus 32 I~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~f~ea~E~~~L~~fL~L 98 (99)
T PF04908_consen 32 IPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYEDFEEANENGELEEFLKL 98 (99)
T ss_dssp --EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHHHHHHHCTT-HHHHHT-
T ss_pred CCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHHHHHHHhhCHHHHHhCc
Confidence 7999999999999999888765 356668999999999999999999999999999863
No 146
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.67 E-value=3.4e-07 Score=82.35 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=110.5
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCc-ccccC-CC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPV-DRVEG-AD 93 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~-~~~~g-~~ 93 (213)
.+...++.|+.+.|..|..+...++++++.-+ ++.+...|..++.+++++|+|...|++.+++ +|+.. -++.| +.
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLSE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcCC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence 34556778889999999999999999996555 8999889999999999999999999999996 55421 34455 55
Q ss_pred chhHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhhhhee-ccCC-CCCCCC-------------CCceEEeccCC
Q psy15246 94 PESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKI-YSNW-PTYPQV-------------VPYDTFDILQD 158 (213)
Q Consensus 94 ~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~-~apW-P~~~~~-------------v~~~~~d~~~~ 158 (213)
..++..||...++. .|.+ ..+.....+.+..-+.+.-|+. ++|| |.+|++ +....+|+...
T Consensus 443 G~Ef~s~i~~i~~~-~~~~---~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 443 GHELNSFILALYNA-AGPG---QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred cHhHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 56899999988752 2222 2234444443332222223444 5665 777776 55667777777
Q ss_pred HHHHHHHHhhcCCCcccceEeCCe--Eee
Q psy15246 159 QEVREGLKIYSNWPTYPQVYVNTE--LIG 185 (213)
Q Consensus 159 ~~~~~~l~~~~~~pt~p~i~i~g~--~~g 185 (213)
++..+.. ++-++|.++|||+ +.|
T Consensus 519 ~~~~~~~----~v~~vP~~~i~~~~~~~G 543 (555)
T TIGR03143 519 PDLKDEY----GIMSVPAIVVDDQQVYFG 543 (555)
T ss_pred HHHHHhC----CceecCEEEECCEEEEee
Confidence 6665433 3457899999996 444
No 147
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.65 E-value=9.1e-08 Score=69.71 Aligned_cols=83 Identities=14% Similarity=0.383 Sum_probs=52.8
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---CCccccEEEEEe-CCCCcccccCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---KVSAVPTFVILK-NLKPVDRVEGA 92 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---~I~~~Pti~~~~-~g~~~~~~~g~ 92 (213)
..+..++.|..+|||.|.+..|.+.++++..+ ++.+--+.-+++.++.++| |.+++|++++++ +|+.+.+. |.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ge 116 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GE 116 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ES
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cC
Confidence 45567888999999999999999999999987 6777777777777777665 788999999996 56776655 55
Q ss_pred CchhHHHHHH
Q psy15246 93 DPESLDKKLQ 102 (213)
Q Consensus 93 ~~~~l~~~i~ 102 (213)
++..+.+++.
T Consensus 117 rP~~~~~~~~ 126 (129)
T PF14595_consen 117 RPKEVQELVD 126 (129)
T ss_dssp S-HHHH----
T ss_pred CCHHHhhccc
Confidence 5555555543
No 148
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.60 E-value=3e-07 Score=72.84 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=62.2
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCCC-Cc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNLK-PV 86 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g~-~~ 86 (213)
.++.-++.||.+.|+.|+.+.|+++.+++++.= .|..+.+|.. .+..++++++|..+|+++++..+. ..
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~-~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF-SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC-EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 477889999999999999999999999999973 4444444421 467899999999999999997443 22
Q ss_pred -ccccCCCch-hHHHH
Q psy15246 87 -DRVEGADPE-SLDKK 100 (213)
Q Consensus 87 -~~~~g~~~~-~l~~~ 100 (213)
.-..|..+. +|.+-
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 223466655 56543
No 149
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.55 E-value=1.6e-07 Score=62.50 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=39.4
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~ 194 (213)
++|..+|+..+.+. ..++..+++.++|++|++|+++||+|++.+..
T Consensus 33 i~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 33 YDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 89999999887554 45666789999999999999999999998753
No 150
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.55 E-value=4.6e-07 Score=70.06 Aligned_cols=44 Identities=23% Similarity=0.046 Sum_probs=36.3
Q ss_pred CCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 17 KDKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
.++++ ++.+||+||++|++..|.++++.+++++.++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46644 556699999999999999999999998656888888753
No 151
>KOG3414|consensus
Probab=98.53 E-value=7.5e-07 Score=63.11 Aligned_cols=71 Identities=20% Similarity=0.413 Sum_probs=64.6
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD 87 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~ 87 (213)
...+.+++.|..+|-|.|.+|...+.++++...+ -..++-||.++.+++.+.|++...||+++|-+++.+.
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence 6788999999999999999999999999999995 5778889999999999999999999999998886544
No 152
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.53 E-value=5.2e-07 Score=66.99 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=56.3
Q ss_pred cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------Cc--hhHHHhCCC
Q psy15246 16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DL--PKLSLNYKV 71 (213)
Q Consensus 16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~--~~l~~~~~I 71 (213)
..+++++|.|| ++||+.|....|.++++.+++++.++.++.|..+ .. ..+++.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 33378888887 9999999999999999999987546777777643 22 456777777
Q ss_pred cc----cc--EEEEEe-CCCCcccccCCC
Q psy15246 72 SA----VP--TFVILK-NLKPVDRVEGAD 93 (213)
Q Consensus 72 ~~----~P--ti~~~~-~g~~~~~~~g~~ 93 (213)
.. .| +++++. +|+......|..
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCC
Confidence 73 22 666664 677666666544
No 153
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.53 E-value=5.7e-07 Score=59.35 Aligned_cols=72 Identities=25% Similarity=0.384 Sum_probs=52.4
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch--hHHHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE--SLDKK 100 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~--~l~~~ 100 (213)
|.+++++|+.|..+...+++++..+. +.+-.+|....+++ .+|||.++|++++ ||+.. +.|..+. +|.++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHH
Confidence 34478889999999999999998885 55556677666667 9999999999954 67633 5563333 68777
Q ss_pred HH
Q psy15246 101 LQ 102 (213)
Q Consensus 101 i~ 102 (213)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 154
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.53 E-value=5.5e-07 Score=68.87 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=62.9
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL 67 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 67 (213)
.++.++|.|| +.||++|....+.+.++.+++.+.++.++.|..+. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999999875456666665432 234667
Q ss_pred hCCCc------cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHH
Q psy15246 68 NYKVS------AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQ 104 (213)
Q Consensus 68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~ 104 (213)
.|++. ..|+.++++ +|+......+.. .+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88886 567888886 776655553322 22466666554
No 155
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.53 E-value=5.8e-07 Score=66.36 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCCc
Q psy15246 17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKVS 72 (213)
Q Consensus 17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I~ 72 (213)
.+++++|.||+.| |++|+...+.++++.++++ ++.++.|+.+.. ..+++.|++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 102 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL 102 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe
Confidence 5789999999999 6999999999999999986 677888876421 3456677765
Q ss_pred c------ccEEEEEe-CCCCcccccCC
Q psy15246 73 A------VPTFVILK-NLKPVDRVEGA 92 (213)
Q Consensus 73 ~------~Pti~~~~-~g~~~~~~~g~ 92 (213)
. .|+..++. +|+.+....|.
T Consensus 103 ~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 103 IKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred eccCCccceEEEEEcCCCeEEEEEECC
Confidence 3 56766665 67666555543
No 156
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.52 E-value=7.7e-07 Score=67.76 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.7
Q ss_pred CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
.+++++|.||+.| |++|.+..+.+.++.+++. ++.++.|..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC
Confidence 5789999999999 9999999999999999985 6777777654
No 157
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.51 E-value=4.9e-07 Score=66.88 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=37.4
Q ss_pred CCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh
Q psy15246 17 KDKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK 64 (213)
Q Consensus 17 ~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~ 64 (213)
.++.+ ++.|++.||+.|+...+.+.++.+++...++.++.|..+....
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 34444 5555699999999999999999999865478999998775443
No 158
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.51 E-value=6.1e-07 Score=67.16 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCccc
Q psy15246 17 KDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSAV 74 (213)
Q Consensus 17 ~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~~ 74 (213)
++++++|.||+. ||+.|....+.+.++.+.+.+.++.++.|..+ ....+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 78889999999999988887546888888754 23456778887654
Q ss_pred ------------cEEEEEe-CCCCcccccCCCch
Q psy15246 75 ------------PTFVILK-NLKPVDRVEGADPE 95 (213)
Q Consensus 75 ------------Pti~~~~-~g~~~~~~~g~~~~ 95 (213)
|+.++++ +|+.+..+.|....
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 5556664 88877777776554
No 159
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.49 E-value=5.5e-07 Score=58.15 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=48.1
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC----CCccccEEEEEeCCCCcccccCCCchhH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY----KVSAVPTFVILKNLKPVDRVEGADPESL 97 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~----~I~~~Pti~~~~~g~~~~~~~g~~~~~l 97 (213)
++.|+++||++|+++...+++. ++.+..+|.+.+.+..+++ ++.++|++.+ +| ....|.+...|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHH
Confidence 5789999999999998888762 4566677777665544443 7899999965 44 34567776666
Q ss_pred HHH
Q psy15246 98 DKK 100 (213)
Q Consensus 98 ~~~ 100 (213)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 160
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.48 E-value=6.9e-07 Score=69.28 Aligned_cols=73 Identities=19% Similarity=0.115 Sum_probs=55.6
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYK 70 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~ 70 (213)
.+++++|.|| +.||+.|....+.+.++.+++.+.++.++.|..+. ..++++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999888864456666665432 335778899
Q ss_pred Cc------cccEEEEEe-CCCCcccc
Q psy15246 71 VS------AVPTFVILK-NLKPVDRV 89 (213)
Q Consensus 71 I~------~~Pti~~~~-~g~~~~~~ 89 (213)
+. ..|+.+++. +|+.....
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEE
Confidence 86 468888775 78655443
No 161
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.48 E-value=3.8e-07 Score=68.56 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=51.6
Q ss_pred hhhhhcCCCeEEEEEEcCCCHHHHhHHH-HH--HHHHHHcCCCcEEEEEEeCCCchhHHHhC--------CCccccEEEE
Q psy15246 11 DVEKYGKDKTAVVHFYADWSDECKHMNT-LF--DEMSKQSKYSQVVFARCIAEDLPKLSLNY--------KVSAVPTFVI 79 (213)
Q Consensus 11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~-~~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~~--------~I~~~Pti~~ 79 (213)
....-+.+|+++|.++++||+.|+.|.. .| .++++.+.. ++.-++||.++.+++...| +..|+|+.++
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vf 108 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVF 108 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEE
Confidence 3344578999999999999999999986 44 345666654 6788899999999999888 8899999998
Q ss_pred Ee-CCCCcc
Q psy15246 80 LK-NLKPVD 87 (213)
Q Consensus 80 ~~-~g~~~~ 87 (213)
+. +|+++.
T Consensus 109 ltPdg~p~~ 117 (163)
T PF03190_consen 109 LTPDGKPFF 117 (163)
T ss_dssp E-TTS-EEE
T ss_pred ECCCCCeee
Confidence 86 777654
No 162
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.47 E-value=1.4e-07 Score=67.18 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=48.4
Q ss_pred ccccCCCcccccchhhhhhhheeccCCCC------CCCC----------CCceEEec-----cCCHHHHHHHHhhc--CC
Q psy15246 115 ITHVPYDTFDILQDQEVREGLKIYSNWPT------YPQV----------VPYDTFDI-----LQDQEVREGLKIYS--NW 171 (213)
Q Consensus 115 ~~~~~~~~f~~l~~~~~~~~v~~~apWP~------~~~~----------v~~~~~d~-----~~~~~~~~~l~~~~--~~ 171 (213)
+..++.++|+.........+|+||||||- |.++ +.++.||| +++.++++..+ ++ +|
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~-I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYK-LDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhC-CCcCCC
Confidence 35678899985555555589999995543 3333 56899999 55677887777 67 89
Q ss_pred CcccceEeCCe
Q psy15246 172 PTYPQVYVNTE 182 (213)
Q Consensus 172 pt~p~i~i~g~ 182 (213)
||+ .+|.+|+
T Consensus 82 PTl-~lF~~g~ 91 (116)
T cd03007 82 PVI-YLFHGGD 91 (116)
T ss_pred CEE-EEEeCCC
Confidence 999 7899884
No 163
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.46 E-value=8.2e-07 Score=63.49 Aligned_cols=67 Identities=15% Similarity=0.326 Sum_probs=48.2
Q ss_pred cCCCeEEEEEEc-------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-------hHHH--hCCCccccEEEE
Q psy15246 16 GKDKTAVVHFYA-------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-------KLSL--NYKVSAVPTFVI 79 (213)
Q Consensus 16 ~~~~~~vV~F~a-------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-------~l~~--~~~I~~~Pti~~ 79 (213)
.++++++|.|++ +|||.|.+..|.+++.....+. +..++.|.+...+ .... +++++++||++-
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 567899999996 6999999999999998887765 7888888774322 3344 699999999999
Q ss_pred EeCC
Q psy15246 80 LKNL 83 (213)
Q Consensus 80 ~~~g 83 (213)
+..+
T Consensus 96 ~~~~ 99 (119)
T PF06110_consen 96 WETG 99 (119)
T ss_dssp CTSS
T ss_pred ECCC
Confidence 8766
No 164
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.38 E-value=1.6e-06 Score=63.55 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=54.4
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------chhHHHhCCCcc
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------LPKLSLNYKVSA 73 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~I~~ 73 (213)
.+++++|.|| +.||+.|....+.+.++.++++..++.++.|..+. ...+++.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6889999999 78999999999999999998854367777776542 234556666665
Q ss_pred cc---------EEEEEe-CCCCcccccCCC
Q psy15246 74 VP---------TFVILK-NLKPVDRVEGAD 93 (213)
Q Consensus 74 ~P---------ti~~~~-~g~~~~~~~g~~ 93 (213)
.| ++++++ +|+.+....|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 54 455554 466555555544
No 165
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.5e-07 Score=62.22 Aligned_cols=73 Identities=33% Similarity=0.578 Sum_probs=51.5
Q ss_pred CccccEEEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCCCcccc-cCCCcccccchhhhhhhheeccCCCCCCCC--
Q psy15246 71 VSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITH-VPYDTFDILQDQEVREGLKIYSNWPTYPQV-- 147 (213)
Q Consensus 71 I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p~~~~~-~~~~~f~~l~~~~~~~~v~~~apWP~~~~~-- 147 (213)
|..-|.+ +|-+|.+..-.+|++... .+.+.. ++ ..+..+++|.|+++|+.|+.|++|||+||+
T Consensus 12 i~~n~Vv-LFMKGtp~~P~CGFS~~~-vqiL~~------------~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 12 IKENPVV-LFMKGTPEFPQCGFSAQA-VQILSA------------CGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred hhcCceE-EEecCCCCCCCCCccHHH-HHHHHH------------cCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 4445544 555677666788988652 222222 22 578999999999999999999999999999
Q ss_pred -CCc-eEEeccC
Q psy15246 148 -VPY-DTFDILQ 157 (213)
Q Consensus 148 -v~~-~~~d~~~ 157 (213)
..| +-.|+..
T Consensus 78 ~GEfvGG~DIv~ 89 (105)
T COG0278 78 NGEFVGGCDIVR 89 (105)
T ss_pred CCEEeccHHHHH
Confidence 333 5566643
No 166
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.37 E-value=3.2e-06 Score=68.33 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=66.1
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCC-CCc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNL-KPV 86 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g-~~~ 86 (213)
.++.-++.||.+.|++|+++.|.++.+++.+.= .+..+.+|.. .+...+++++|..+|+++++..+ +..
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI-SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 355889999999999999999999999999983 3444444433 23568999999999999998744 322
Q ss_pred -ccccCCCch-hHHHHHHHHhc
Q psy15246 87 -DRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 87 -~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.--.|..+. +|.+.|...+.
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 223476666 68887777653
No 167
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.37 E-value=2e-06 Score=66.39 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=37.7
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
.+++++|.|||+||+.|++ .+.++++.++|++.++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4799999999999999975 779999999998657999998874
No 168
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.35 E-value=2.6e-06 Score=70.51 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=75.4
Q ss_pred ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhH-----HHHHHHH-HHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHM-----NTLFDEM-SKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~-----~~~~~~l-~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P 75 (213)
.|++|+..++..++++.+..+|+|+.|--..-... ...+-+| |+-+...++.|+.||..++..+++++|+...+
T Consensus 35 RVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~ 114 (383)
T PF01216_consen 35 RVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEG 114 (383)
T ss_dssp -CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STT
T ss_pred ceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccC
Confidence 37899998899999999999999999874332221 1212233 44444457999999999999999999999999
Q ss_pred EEEEEeCCCCcccccCCCchhHHHHHHHHhcc
Q psy15246 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAST 107 (213)
Q Consensus 76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 107 (213)
++.+|++|+.+.+.+-+++.-|..||...+..
T Consensus 115 SiyVfkd~~~IEydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 115 SIYVFKDGEVIEYDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp EEEEEETTEEEEE-S--SHHHHHHHHHHHHSS
T ss_pred cEEEEECCcEEEecCccCHHHHHHHHHHhccc
Confidence 99999999999876334444799999998754
No 169
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.34 E-value=6.8e-07 Score=77.43 Aligned_cols=58 Identities=22% Similarity=0.425 Sum_probs=47.8
Q ss_pred CCceEEeccCCHHHHH---HHH-----hhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCC
Q psy15246 148 VPYDTFDILQDQEVRE---GLK-----IYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP 207 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~---~l~-----~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~ 207 (213)
++|..+|++.++...+ .++ +.+|..|+|||||+|++|||+|++++ ..|+|.++|++-+
T Consensus 27 i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~--~~g~l~~~~~~~~ 92 (410)
T PRK12759 27 IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA--RAGEVIARVKGSS 92 (410)
T ss_pred CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--HhCCHHHHhcCCc
Confidence 8999999998764333 322 23688999999999999999999988 9999999998743
No 170
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.32 E-value=4e-06 Score=64.97 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=63.4
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------CchhHHHhCC
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------DLPKLSLNYK 70 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~~ 70 (213)
.++.+++.|| +.||+.|....+.+.++.+++...++.++.|..+ .+.+++++||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4678999999 9999999999999999999986545666666644 2346789999
Q ss_pred Cc----cc--cEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246 71 VS----AV--PTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ 104 (213)
Q Consensus 71 I~----~~--Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (213)
+. ++ |+..++. +|+..... .|++.+++.+.|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 83 56 8888886 77644332 233444666666544
No 171
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.31 E-value=1e-05 Score=61.91 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=79.1
Q ss_pred eEEeCCchhhhhhcCCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEE
Q psy15246 3 VVQISEELDVEKYGKDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVI 79 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~ 79 (213)
+.++|.+........+.+ +++.|..........+...++.+++.+++ ++.|+.+|++..+++++.+++. .+|++++
T Consensus 79 v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi 157 (184)
T PF13848_consen 79 VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVI 157 (184)
T ss_dssp CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEE
T ss_pred ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEE
Confidence 567888777777777765 78888878888999999999999999997 8999999999999999999999 9999999
Q ss_pred EeC-CCCccc-ccCCCc-hhHHHHHHH
Q psy15246 80 LKN-LKPVDR-VEGADP-ESLDKKLQN 103 (213)
Q Consensus 80 ~~~-g~~~~~-~~g~~~-~~l~~~i~~ 103 (213)
+.. +....+ ..+... ..|.+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 158 FDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 983 322211 234333 368888763
No 172
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.29 E-value=6.2e-06 Score=66.37 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCC--CCc
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNL--KPV 86 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g--~~~ 86 (213)
++.-++.||.+.|++|+++.|+++.+++.+.- .|..+.+|.. .+...+++++|..+|+++++..+ +..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL-SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 55889999999999999999999999999984 4555555542 23446789999999999999743 333
Q ss_pred ccccCCCch-hHHHHHHHHhc
Q psy15246 87 DRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 87 ~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.-..|..+. +|.+.|...+.
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 334476666 78888777653
No 173
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.28 E-value=4.5e-06 Score=65.56 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCeEEE-EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHHh
Q psy15246 17 KDKTAVV-HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSLN 68 (213)
Q Consensus 17 ~~~~~vV-~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~ 68 (213)
.++.++| .|+++||+.|....+.+.++.++++..++.++.|.++ .+.++++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4565554 6899999999999999999988887445666666543 23457788
Q ss_pred CCCc------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHHh
Q psy15246 69 YKVS------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQA 105 (213)
Q Consensus 69 ~~I~------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~~ 105 (213)
||+. .+|+++++. +|+..... .|++.+++.+.|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8984 589998886 66543322 2455557777776653
No 174
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.27 E-value=2.9e-06 Score=62.37 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=37.9
Q ss_pred CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCCC---cEEEEEEeCC
Q psy15246 17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKYS---QVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~~---~v~~~~vd~~ 60 (213)
.+++++|.||++||++ |.+..+.+.++.+++... ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 999999999999988752 3888888764
No 175
>PRK15000 peroxidase; Provisional
Probab=98.25 E-value=5.9e-06 Score=64.78 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246 17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL 67 (213)
Q Consensus 17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 67 (213)
.++.++|.||+ .||+.|....+.+.++.++++..++.++.|.++. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999875467777776552 224677
Q ss_pred hCCCc------cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHH
Q psy15246 68 NYKVS------AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQ 104 (213)
Q Consensus 68 ~~~I~------~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~ 104 (213)
.|++. ++|+.+++. +|+......+ ++.+++.+.++.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 688888887 6765443333 3334566655543
No 176
>KOG3425|consensus
Probab=98.24 E-value=6.3e-06 Score=58.02 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=55.0
Q ss_pred hcCCCeEEEEEEc--------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------chhHHHhCCC-ccccEEE
Q psy15246 15 YGKDKTAVVHFYA--------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------LPKLSLNYKV-SAVPTFV 78 (213)
Q Consensus 15 ~~~~~~~vV~F~a--------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~~~l~~~~~I-~~~Pti~ 78 (213)
+.+++.++|.|++ +|||.|.+..|.+.+.-+..+. ++.|+.|++.+ +-.+....++ .++||++
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLl 100 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLL 100 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCCceeecceee
Confidence 3577779999996 7999999999999998887765 89999999764 3345666677 8999998
Q ss_pred EEeC
Q psy15246 79 ILKN 82 (213)
Q Consensus 79 ~~~~ 82 (213)
=+++
T Consensus 101 rw~~ 104 (128)
T KOG3425|consen 101 RWKR 104 (128)
T ss_pred EEcC
Confidence 8874
No 177
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.23 E-value=4.2e-06 Score=52.43 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=41.8
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~ 84 (213)
++.|+.+||++|++.+..|++. ++.+-.+|.+.+++. .+..+..++|++.+ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5789999999999999988653 577888888876543 33449999999875 554
No 178
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.19 E-value=8.3e-06 Score=58.30 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=66.0
Q ss_pred cCCCeEEEEEEcC----CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe--CC--CC
Q psy15246 16 GKDKTAVVHFYAD----WSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK--NL--KP 85 (213)
Q Consensus 16 ~~~~~~vV~F~a~----wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~--~g--~~ 85 (213)
.+.|.++|+++++ ||..|+.... =+++.+-+.. ++.+...|++. ..+++..++++++|++.++. ++ +.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 6789999999999 8888866431 1334444444 68888888874 45799999999999999883 33 35
Q ss_pred cccccCCCch-hHHHHHHHHh
Q psy15246 86 VDRVEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 86 ~~~~~g~~~~-~l~~~i~~~~ 105 (213)
+.+..|..+. +|...++...
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 7788897776 7888887764
No 179
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.19 E-value=9.6e-06 Score=65.02 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=59.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE--------------------------------------
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-------------------------------------- 57 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v-------------------------------------- 57 (213)
.+++..++.|.-+.||+|+++.+.+.++.+. ++.+..+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 3567889999999999999999988876431 2222211
Q ss_pred ------eCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHH
Q psy15246 58 ------IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 58 ------d~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~ 104 (213)
+++++.++++++||+++||++ +.+|+.+ .|..+. +|.++|++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 112456689999999999998 7788754 577654 788888764
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.18 E-value=7.6e-06 Score=53.27 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=49.9
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---CCccccEEEEEeCCCCcccccCCCchhHHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---KVSAVPTFVILKNLKPVDRVEGADPESLDK 99 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~ 99 (213)
..|..++|++|++.+..|++. ++.+-.+|++++++..+++ |..++|++++ +|. ....|+++..|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 468899999999999988762 5778888888877665554 8889999744 453 2467888876654
No 181
>KOG0911|consensus
Probab=98.17 E-value=1.9e-06 Score=67.20 Aligned_cols=74 Identities=38% Similarity=0.688 Sum_probs=54.6
Q ss_pred CCccccEEEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCC--
Q psy15246 70 KVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQV-- 147 (213)
Q Consensus 70 ~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~-- 147 (213)
-++.-|.. +|.+|.+..-.+|++.. +...|+.+ .+++..||++.|+++|+.++.|++||||||+
T Consensus 135 lv~a~~v~-lFmKG~p~~P~CGFS~~-~v~iL~~~------------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI 200 (227)
T KOG0911|consen 135 LVKAKPVM-LFMKGTPEEPKCGFSRQ-LVGILQSH------------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV 200 (227)
T ss_pred hcccCeEE-EEecCCCCcccccccHH-HHHHHHHc------------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeE
Confidence 45566654 56677776667788754 33444443 4569999999999999999999999999999
Q ss_pred -CCc-eEEeccC
Q psy15246 148 -VPY-DTFDILQ 157 (213)
Q Consensus 148 -v~~-~~~d~~~ 157 (213)
..| +-.|+..
T Consensus 201 ~GEFiGGlDIl~ 212 (227)
T KOG0911|consen 201 KGEFIGGLDILK 212 (227)
T ss_pred CCEeccCcHHHH
Confidence 555 5577754
No 182
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.15 E-value=8.3e-05 Score=54.24 Aligned_cols=104 Identities=12% Similarity=0.217 Sum_probs=75.1
Q ss_pred ceEEeCCchhhh-hhcCCCeEEEEEEcC--CC-HHH-HhHHHHHHHHHHHcCCCc-EEEEEEeCCCchhHHHhCCCc--c
Q psy15246 2 SVVQISEELDVE-KYGKDKTAVVHFYAD--WS-DEC-KHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVS--A 73 (213)
Q Consensus 2 ~v~~l~~~~~~~-~~~~~~~~vV~F~a~--wC-~~C-~~~~~~~~~l~~~~~~~~-v~~~~vd~~~~~~l~~~~~I~--~ 73 (213)
.+++|+++...+ .-.+++..+|-|.-. .| +.+ ..+...+.++|+.+++ + +.|+.+|.+....+.+.||+. +
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg-k~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK-KPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC-CcEEEEEEeCcccHHHHHHcCCCccC
Confidence 378888854433 334456667766432 12 223 4678899999999998 6 999999999999999999996 4
Q ss_pred ccEEEEEeCCC-CcccccC-CCchhHHHHHHHHhc
Q psy15246 74 VPTFVILKNLK-PVDRVEG-ADPESLDKKLQNQAS 106 (213)
Q Consensus 74 ~Pti~~~~~g~-~~~~~~g-~~~~~l~~~i~~~~~ 106 (213)
+|+++++...+ ....+.| .+.++|.+|+++.+.
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 99999997543 2221334 444589999999975
No 183
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.13 E-value=5.6e-07 Score=64.05 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=49.5
Q ss_pred ccccCCCccccc---chhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246 115 ITHVPYDTFDIL---QDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQ 176 (213)
Q Consensus 115 ~~~~~~~~f~~l---~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~ 176 (213)
+..++.++|+.+ .+.+..++|.||||| |.++++ +.|+.+||+.+.+++..-.++.++||+ .
T Consensus 11 v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl-~ 89 (113)
T cd03006 11 VLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI-H 89 (113)
T ss_pred eEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE-E
Confidence 456777888743 344555899999999 656555 678999999988887432236788999 7
Q ss_pred eEeCCe
Q psy15246 177 VYVNTE 182 (213)
Q Consensus 177 i~i~g~ 182 (213)
+|.+|+
T Consensus 90 lf~~g~ 95 (113)
T cd03006 90 LYYRSR 95 (113)
T ss_pred EEECCc
Confidence 888876
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.13 E-value=2.5e-05 Score=52.19 Aligned_cols=72 Identities=8% Similarity=0.180 Sum_probs=55.0
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH---HhCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS---LNYKVSAVPTFVILKNLKPVDRVEGADPESLD 98 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~---~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~ 98 (213)
+..|..+||++|++.+..|++ . ++.|-.+|++++++.. +..+...+|++++ ++ ....|++.++|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHH
Confidence 567889999999999988866 2 5788888998877643 3457789999864 44 235699999888
Q ss_pred HHHHHHh
Q psy15246 99 KKLQNQA 105 (213)
Q Consensus 99 ~~i~~~~ 105 (213)
+.+....
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8877653
No 185
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.08 E-value=9.8e-06 Score=53.79 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=43.1
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----hHHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----KLSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----~l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|+++|||+|+.+.+.++++... +.+..++.+.+. .+.+..++.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5779999999999999999997653 446667766542 35566788999996 5566543
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.07 E-value=5.6e-06 Score=51.82 Aligned_cols=37 Identities=41% Similarity=0.716 Sum_probs=35.2
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
++|..+|++.+++.++.+++.++..|+|++|++|++|
T Consensus 24 i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 24 IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred CeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 7899999999999999999999999999999999987
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.07 E-value=1.9e-05 Score=70.62 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-h
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-S 96 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~ 96 (213)
...-+-.|+++.||+|......+++++...+ +|.+-.+|..+.++++++|+|.++|++++ +|+.+ +.|..+. +
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~ 189 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEE 189 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHH
Confidence 3455889999999999999999999999877 79999999999999999999999999965 56533 3455554 6
Q ss_pred HHHHHHHH
Q psy15246 97 LDKKLQNQ 104 (213)
Q Consensus 97 l~~~i~~~ 104 (213)
+.+.+.+.
T Consensus 190 ~~~~~~~~ 197 (517)
T PRK15317 190 ILAKLDTG 197 (517)
T ss_pred HHHHHhcc
Confidence 66666643
No 188
>KOG3171|consensus
Probab=98.06 E-value=2.6e-05 Score=60.44 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred eEEeCC-chhhhhhc---CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 3 VVQISE-ELDVEKYG---KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 3 v~~l~~-~~~~~~~~---~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
|+++++ ..+.+.+. +.-+++|+.|-+.-+-|..+...+.-||++++ .+.|+++-.+. ....++|..+++||++
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~-~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSN-TGASDRFSLNVLPTLL 216 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeecc-ccchhhhcccCCceEE
Confidence 678877 44555553 34578899999999999999999999999999 89999987654 4678899999999999
Q ss_pred EEeCCCCccccc
Q psy15246 79 ILKNLKPVDRVE 90 (213)
Q Consensus 79 ~~~~g~~~~~~~ 90 (213)
+|++|..+..+.
T Consensus 217 iYkgGeLIgNFv 228 (273)
T KOG3171|consen 217 IYKGGELIGNFV 228 (273)
T ss_pred EeeCCchhHHHH
Confidence 999998876544
No 189
>PRK13189 peroxiredoxin; Provisional
Probab=98.04 E-value=2.3e-05 Score=62.40 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCC-eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246 17 KDK-TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN 68 (213)
Q Consensus 17 ~~~-~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 68 (213)
.++ .+++.|+++||+.|....+.+.++.++++..++.++.|.++. ..++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 445678899999999999999999998875456666665442 2356788
Q ss_pred CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246 69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ 104 (213)
Q Consensus 69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (213)
||+. .+|+.+++. +|+..... .|++.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 468788886 66543322 244444666666554
No 190
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.03 E-value=3.1e-05 Score=62.95 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=61.9
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL 67 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 67 (213)
.++.+++.|| +.||+.|....+.+.++.+++...++.++.|.++. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677888888 89999999999999999988875356666665442 245788
Q ss_pred hCCCc-----cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246 68 NYKVS-----AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ 104 (213)
Q Consensus 68 ~~~I~-----~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (213)
.||+. ..|+.++++ +|+..... .|.+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99985 589988887 77654432 234444566655544
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=2.3e-05 Score=70.63 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=63.0
Q ss_pred CCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-
Q psy15246 18 DKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE- 95 (213)
Q Consensus 18 ~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~- 95 (213)
++++ +-.|.+++|++|.+....+++++.+.+ +|..-.+|.+..++++++|+|.++|++++ ||+.+ +.|..+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~ 548 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIE 548 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHH
Confidence 4555 445689999999999999999999988 79999999999999999999999999876 56533 3464444
Q ss_pred hHHHHH
Q psy15246 96 SLDKKL 101 (213)
Q Consensus 96 ~l~~~i 101 (213)
++.++|
T Consensus 549 ~~~~~~ 554 (555)
T TIGR03143 549 EMLELI 554 (555)
T ss_pred HHHHhh
Confidence 566654
No 192
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.02 E-value=0.00011 Score=52.10 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=76.1
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHH---cCCCcEEEEEEeCCCchhHHHhCCCcc--ccEE
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ---SKYSQVVFARCIAEDLPKLSLNYKVSA--VPTF 77 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~---~~~~~v~~~~vd~~~~~~l~~~~~I~~--~Pti 77 (213)
|-++|.+.......++.+..+.|+ .-..-..+.+.+.++|++ +++ ++.|+.+|.+......+.+|+.. +|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 346677767777777777777777 223347788999999999 998 89999999999888999999997 9999
Q ss_pred EEEeCCC--CcccccC-CCchhHHHHHHHHhc
Q psy15246 78 VILKNLK--PVDRVEG-ADPESLDKKLQNQAS 106 (213)
Q Consensus 78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~~~ 106 (213)
.+..... ......+ .+.+.|.+|+++.+.
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 9987432 2221333 444589999998863
No 193
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.01 E-value=3e-05 Score=61.49 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246 17 KDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN 68 (213)
Q Consensus 17 ~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 68 (213)
.++. +++.|+++||+.|....+.+.++.+++...++.++.|.++. +.++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 56799999999999999999999999865467777776553 2356788
Q ss_pred CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246 69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ 104 (213)
Q Consensus 69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (213)
||+. .+|++.++. +|+..... .|.+.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 679888886 66543322 233334566666543
No 194
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.00 E-value=5.6e-05 Score=54.36 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=58.4
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc-EEEEEeCCCCc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP-TFVILKNLKPV 86 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P-ti~~~~~g~~~ 86 (213)
..++.+++.|..+|-+.|.++...+.+++...++ -..++.||.++-+++.+.|.+. -| |++||-+++.+
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEE
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEE
Confidence 6789999999999999999999999999999996 6888999999999999999999 67 56677566543
No 195
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.00 E-value=0.00011 Score=50.40 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=67.0
Q ss_pred EEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 4 VQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 4 ~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
.++++....+ .+..+..++|-|+.++|+ .....|.++|+.+++ .+.|+.+. +.++++++++.. |++++|+.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~ 73 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVKP-GSVVLFKP 73 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCCC-CceEEeCC
Confidence 4566643333 578899999999999987 466789999999986 68888766 567888887754 89999976
Q ss_pred C-CCcccccC-CCchhHHHHHHH
Q psy15246 83 L-KPVDRVEG-ADPESLDKKLQN 103 (213)
Q Consensus 83 g-~~~~~~~g-~~~~~l~~~i~~ 103 (213)
. .....+.| ....+|.+||..
T Consensus 74 ~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cccCCccCCCCCCHHHHHHHHHh
Confidence 4 33333455 444589999864
No 196
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.97 E-value=3.6e-05 Score=60.10 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE---------------------------------------
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC--------------------------------------- 57 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v--------------------------------------- 57 (213)
+.+..++.|+.+.|++|+++.+.+.+. .+ ++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 467899999999999999999888751 11 2222221
Q ss_pred ------eCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHH
Q psy15246 58 ------IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKK 100 (213)
Q Consensus 58 ------d~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~ 100 (213)
+.+++..+++++||+++||++ +.+|+. ..|..+. +|.++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhh
Confidence 122345688999999999997 778865 3466554 45554
No 197
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.96 E-value=0.00013 Score=51.71 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=67.4
Q ss_pred EeCCchhhhhhcCCCeEEEEE---EcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhCCCcc----ccE
Q psy15246 5 QISEELDVEKYGKDKTAVVHF---YADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSA----VPT 76 (213)
Q Consensus 5 ~l~~~~~~~~~~~~~~~vV~F---~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~~I~~----~Pt 76 (213)
++|.++..... ..+..++++ |+..-..-..++..+.++|+.++ + ++.|+.+|.++.....+.||+.. +|+
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence 45565444443 344444443 23344555778999999999999 7 89999999999888999999985 999
Q ss_pred EEEEeCCCCccc-ccC-C-CchhHHHHHHHH
Q psy15246 77 FVILKNLKPVDR-VEG-A-DPESLDKKLQNQ 104 (213)
Q Consensus 77 i~~~~~g~~~~~-~~g-~-~~~~l~~~i~~~ 104 (213)
+.+..... .++ ..+ . +.++|.+|+++.
T Consensus 81 ~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 81 VAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 99987322 222 222 3 445799998765
No 198
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.91 E-value=1.9e-06 Score=60.03 Aligned_cols=63 Identities=14% Similarity=0.322 Sum_probs=45.6
Q ss_pred ccCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246 117 HVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN 180 (213)
Q Consensus 117 ~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~ 180 (213)
.++..+|+. +.+....++|.||+|| |.|.++ +.|+.+|++.++++++.+. ..++||+ .+|.+
T Consensus 5 ~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~ 82 (104)
T cd03004 5 TLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQAN-IRAYPTI-RLYPG 82 (104)
T ss_pred EcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcC-CCcccEE-EEEcC
Confidence 445666763 3343445899999999 444333 7789999999999887775 6778888 67777
Q ss_pred C
Q psy15246 181 T 181 (213)
Q Consensus 181 g 181 (213)
|
T Consensus 83 g 83 (104)
T cd03004 83 N 83 (104)
T ss_pred C
Confidence 7
No 199
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.91 E-value=4.6e-05 Score=59.83 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHhCCCc
Q psy15246 20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLNYKVS 72 (213)
Q Consensus 20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~I~ 72 (213)
.+++.|+++||+.|....+.+.++.++++..++.++.|.++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999875467777776552 23578889886
Q ss_pred ----c----ccEEEEEe-CCCCccccc-----CCCchhHHHHHHHH
Q psy15246 73 ----A----VPTFVILK-NLKPVDRVE-----GADPESLDKKLQNQ 104 (213)
Q Consensus 73 ----~----~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~ 104 (213)
+ .|+.+++. +|+...... |++.+++.+.|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 34566665 676543332 44444676666654
No 200
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.89 E-value=4.5e-05 Score=50.54 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---hhHHHhCCCccccEEEEEeCCCCc
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---PKLSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~~l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
.+.-++.|+.+||++|++.+..|++. ++.+-.+|++++ .++....+..++|.+. .+|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 34446789999999999999999753 455666777655 3455667899999984 467543
No 201
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.89 E-value=6.7e-05 Score=58.71 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=54.0
Q ss_pred CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246 17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL 67 (213)
Q Consensus 17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 67 (213)
.++.++|.||+ .||+.|....+.+.++.+++...++.++.|+++. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999995 8899999988999999999886567777776542 235778
Q ss_pred hCCCc------cccEEEEEe-CCCCcc
Q psy15246 68 NYKVS------AVPTFVILK-NLKPVD 87 (213)
Q Consensus 68 ~~~I~------~~Pti~~~~-~g~~~~ 87 (213)
.||+. .+|+..+++ +|+...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEE
Confidence 88986 468888887 665443
No 202
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.87 E-value=2e-06 Score=59.62 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=46.8
Q ss_pred cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246 116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN 180 (213)
Q Consensus 116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~ 180 (213)
..++..+|+........++|.||+|| |.+.++ +.|+.+||+.++++++.+. ..++||+ .+|-+
T Consensus 4 ~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~ 81 (101)
T cd03003 4 VTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQG-VNSYPSL-YVFPS 81 (101)
T ss_pred EEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcC-CCccCEE-EEEcC
Confidence 34566677744333455899999999 444333 6789999999998887776 6677887 67777
Q ss_pred Ce
Q psy15246 181 TE 182 (213)
Q Consensus 181 g~ 182 (213)
|+
T Consensus 82 g~ 83 (101)
T cd03003 82 GM 83 (101)
T ss_pred CC
Confidence 76
No 203
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.86 E-value=7.9e-05 Score=59.05 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=60.2
Q ss_pred CCCeEE-EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246 17 KDKTAV-VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN 68 (213)
Q Consensus 17 ~~~~~v-V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 68 (213)
.++.++ +.|+++||+.|....+.|.++++++...++.++.|.++. +.+++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 455554 488999999999999999999999864457777776552 2356778
Q ss_pred CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246 69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ 104 (213)
Q Consensus 69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (213)
||+. ..|+.+++. +|+..... .|++.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 368787886 66544322 244444666666554
No 204
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.85 E-value=1.5e-05 Score=57.30 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=48.4
Q ss_pred ccccCCCccccc-chhhhhhhheeccCC---C-CCCCC------------------CCceEEeccCCHHHHHHHHhhcCC
Q psy15246 115 ITHVPYDTFDIL-QDQEVREGLKIYSNW---P-TYPQV------------------VPYDTFDILQDQEVREGLKIYSNW 171 (213)
Q Consensus 115 ~~~~~~~~f~~l-~~~~~~~~v~~~apW---P-~~~~~------------------v~~~~~d~~~~~~~~~~l~~~~~~ 171 (213)
+..++.++|+.. .+... -+|.||+|| | .+.++ +.|+++|+++++++++.++ +.++
T Consensus 11 v~~lt~~nF~~~v~~~~~-~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~-I~~i 88 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDV-LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG-LDEE 88 (120)
T ss_pred eeeCChhhHHHHHHhCCc-eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC-Cccc
Confidence 355677888833 33333 455556554 3 24321 7899999999999999888 7899
Q ss_pred CcccceEeCCeEee
Q psy15246 172 PTYPQVYVNTELIG 185 (213)
Q Consensus 172 pt~p~i~i~g~~~g 185 (213)
||+ .+|.||+.+.
T Consensus 89 PTl-~lfk~G~~v~ 101 (120)
T cd03065 89 DSI-YVFKDDEVIE 101 (120)
T ss_pred cEE-EEEECCEEEE
Confidence 999 8999998664
No 205
>KOG2603|consensus
Probab=97.83 E-value=0.00018 Score=58.90 Aligned_cols=105 Identities=13% Similarity=0.288 Sum_probs=78.1
Q ss_pred ceEEeCCchhhhhhc---CCCeEEEEEEc----CCCHHHHhHHHHHHHHHHHcCC-------CcEEEEEEeCCCchhHHH
Q psy15246 2 SVVQISEELDVEKYG---KDKTAVVHFYA----DWSDECKHMNTLFDEMSKQSKY-------SQVVFARCIAEDLPKLSL 67 (213)
Q Consensus 2 ~v~~l~~~~~~~~~~---~~~~~vV~F~a----~wC~~C~~~~~~~~~l~~~~~~-------~~v~~~~vd~~~~~~l~~ 67 (213)
+|+.++++.....+. .+=..+|.|.| ..|.-|++...++.-++..+.. .++-|+.||.++.+++.+
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 377788866655552 22346778887 5799999999999999887652 258899999999999999
Q ss_pred hCCCccccEEEEEeCC--CC------cccccCCCchhHHHHHHHHhc
Q psy15246 68 NYKVSAVPTFVILKNL--KP------VDRVEGADPESLDKKLQNQAS 106 (213)
Q Consensus 68 ~~~I~~~Pti~~~~~g--~~------~~~~~g~~~~~l~~~i~~~~~ 106 (213)
+++++++|++.+|... .. .....|..++++.+|+++..+
T Consensus 121 ~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 9999999999999522 11 112224455679999988753
No 206
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.82 E-value=9.7e-05 Score=66.03 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=65.6
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-h
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-S 96 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~ 96 (213)
+..-+-.|+++.||+|......+++++...+ +|..-.+|..+.++++++|+|.++|++++ +|+.+ ..|..+. +
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~ 190 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAE 190 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHH
Confidence 4455888999999999999999999999988 78888899999999999999999999965 55533 3455544 5
Q ss_pred HHHHHHHH
Q psy15246 97 LDKKLQNQ 104 (213)
Q Consensus 97 l~~~i~~~ 104 (213)
+.+.+...
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 66666544
No 207
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.82 E-value=5.1e-05 Score=53.13 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=65.4
Q ss_pred EeCCchhhhhhcCCCeEEEEEEcC--CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 5 QISEELDVEKYGKDKTAVVHFYAD--WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 5 ~l~~~~~~~~~~~~~~~vV~F~a~--wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
.++.+.....++.++..++.|..+ -++.+....-.+-++.+.+++ .+..+.+......++..+|++..+|++++|++
T Consensus 13 ~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 13 RVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp EE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TSSSEEEEEET
T ss_pred eechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCccCCeEEEEEC
Confidence 445554555666777766655542 234555566688999999997 78888888778889999999999999999999
Q ss_pred CCCcccccCCCc
Q psy15246 83 LKPVDRVEGADP 94 (213)
Q Consensus 83 g~~~~~~~g~~~ 94 (213)
|+.+....|...
T Consensus 92 g~~lG~i~gi~d 103 (107)
T PF07449_consen 92 GRYLGAIEGIRD 103 (107)
T ss_dssp TEEEEEEESSST
T ss_pred CEEEEEecCeec
Confidence 998877777553
No 208
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.80 E-value=0.00021 Score=57.97 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------------------------------------
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------------------------- 59 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------------------------- 59 (213)
+.+.+++.|.-+.||+|+++.+.+..+.+. + +|.+..+-.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 456789999999999999999888776543 1 233322210
Q ss_pred -------------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHH
Q psy15246 60 -------------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 60 -------------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i 101 (213)
.++..+++++||+++|++++-++...+....|..+. +|.+.+
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence 012346788999999999887632233446787765 576655
No 209
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.79 E-value=9.7e-05 Score=47.11 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=41.0
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|+++||++|++++..+++.. +.+..+|.+.+.+. .+..+..++|++ |.+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 56799999999999999988763 55667787776543 344577788877 4466544
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.78 E-value=0.00013 Score=55.53 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=33.7
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v 57 (213)
..++.++.|+...||+|+.+.+.+..+.+++++ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 678899999999999999999999999988875 5555433
No 211
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.75 E-value=0.00016 Score=46.91 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=40.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh---HHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK---LSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~---l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|..+||+.|.+.+..+++. ++.+-.+|.+++.+ +....+..++|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 5679999999999999888863 45566667665542 3344688999997 4567643
No 212
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.75 E-value=2.4e-05 Score=55.23 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred cccCCCcccccchhhhhhhheeccCC----------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246 116 THVPYDTFDILQDQEVREGLKIYSNW----------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY 178 (213)
Q Consensus 116 ~~~~~~~f~~l~~~~~~~~v~~~apW----------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~ 178 (213)
+.++..+|+.+...+-...|.||++| |.++++ +.|..+|+.+++++...++ +.+.||+ .+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~-V~sIPTl-i~f 90 (111)
T cd02965 13 PRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFG-VLRTPAL-LFF 90 (111)
T ss_pred cccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcC-CCcCCEE-EEE
Confidence 44577888855555556888999997 444333 5688999999998887776 7789999 789
Q ss_pred eCCeEeehH
Q psy15246 179 VNTELIGGL 187 (213)
Q Consensus 179 i~g~~~gg~ 187 (213)
.+|+.++..
T Consensus 91 kdGk~v~~~ 99 (111)
T cd02965 91 RDGRYVGVL 99 (111)
T ss_pred ECCEEEEEE
Confidence 999877643
No 213
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.73 E-value=7.1e-05 Score=49.42 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=39.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKP 85 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~ 85 (213)
++.|+.+||++|.+.+..+++. ++.+-.+|++.+++. .+..+..++|++ |.+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 3568899999999999999874 345566666666544 444578899997 446653
No 214
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.73 E-value=0.0012 Score=47.07 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=69.8
Q ss_pred eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHH-HHcCC-CcEEEEEEeCC-----CchhHHHhCCC--cc
Q psy15246 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS-KQSKY-SQVVFARCIAE-----DLPKLSLNYKV--SA 73 (213)
Q Consensus 3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~-~~~~~-~~v~~~~vd~~-----~~~~l~~~~~I--~~ 73 (213)
.+.|++-.+..++.+.+.++|.|=... +--.-...|.+++ +.... .++-++.|-+. +|.+|+++|+| ..
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 577888778888899999999997654 2233345677777 44332 37888888764 58899999999 57
Q ss_pred ccEEEEEeCC-CCcccc--cC-CCchhHHHHHHHHh
Q psy15246 74 VPTFVILKNL-KPVDRV--EG-ADPESLDKKLQNQA 105 (213)
Q Consensus 74 ~Pti~~~~~g-~~~~~~--~g-~~~~~l~~~i~~~~ 105 (213)
+|.+.+|..| ...-++ .| .+.++|++|+++..
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 9999999955 332233 33 45558999998874
No 215
>KOG4277|consensus
Probab=97.73 E-value=9.7e-06 Score=66.02 Aligned_cols=57 Identities=18% Similarity=0.452 Sum_probs=45.7
Q ss_pred hhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe---Eeeh
Q psy15246 128 DQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE---LIGG 186 (213)
Q Consensus 128 ~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~---~~gg 186 (213)
+... |+|.||||| |.|.++ ++++++|++.-+.+..++. +.||||+ .+|.+|- .-||
T Consensus 42 dddi-W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefg-iqGYPTI-k~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 42 DDDI-WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFG-IQGYPTI-KFFKGDHAIDYRGG 118 (468)
T ss_pred cCCe-EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhc-cCCCceE-EEecCCeeeecCCC
Confidence 3444 999999999 888887 8899999999999999888 8899999 4554442 3466
Q ss_pred H
Q psy15246 187 L 187 (213)
Q Consensus 187 ~ 187 (213)
.
T Consensus 119 R 119 (468)
T KOG4277|consen 119 R 119 (468)
T ss_pred c
Confidence 5
No 216
>PHA03050 glutaredoxin; Provisional
Probab=97.72 E-value=0.00015 Score=51.09 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=44.2
Q ss_pred hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---c----hhHHHhCCCccccEEEEEeCCCC
Q psy15246 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---L----PKLSLNYKVSAVPTFVILKNLKP 85 (213)
Q Consensus 13 ~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---~----~~l~~~~~I~~~Pti~~~~~g~~ 85 (213)
+.+++++ ++.|..+|||+|++.+..|+++.-..+ . +-.+|+++ . .++.+..|.+++|++ |-+|+.
T Consensus 8 ~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~--~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~ 79 (108)
T PHA03050 8 QRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG--A--YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTS 79 (108)
T ss_pred HHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC--C--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEE
Confidence 3444444 567999999999999999988754433 2 34445443 2 245566788999998 446654
Q ss_pred c
Q psy15246 86 V 86 (213)
Q Consensus 86 ~ 86 (213)
+
T Consensus 80 i 80 (108)
T PHA03050 80 I 80 (108)
T ss_pred E
Confidence 4
No 217
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.71 E-value=5.1e-05 Score=48.78 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=36.5
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDI 189 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~ 189 (213)
+.|..+|+..+++..+.+.+..+..++|+++++|+.++|++.
T Consensus 25 i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 788999999988877777777889999999999999999753
No 218
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.70 E-value=0.00044 Score=51.67 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=35.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc--CCCcEEEEEEeC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFARCIA 59 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~--~~~~v~~~~vd~ 59 (213)
...+..|+.|+...||+|.++.+.+.++.+.+ ++ ++.+...+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 35678899999999999999999999998888 55 788887764
No 219
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.70 E-value=0.00011 Score=51.05 Aligned_cols=56 Identities=27% Similarity=0.157 Sum_probs=38.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh-------HHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-------LSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~-------l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|..+|||+|++.+..|+++ ++.+..+|++.+++ +.+..|..++|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 5669999999999999988775 24444556554432 3444578899997 5567544
No 220
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.69 E-value=1.9e-05 Score=54.58 Aligned_cols=63 Identities=13% Similarity=0.295 Sum_probs=44.1
Q ss_pred cccCCCcccccchhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246 116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV 179 (213)
Q Consensus 116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i 179 (213)
..++.++|+.+.... ++|.||||| |.|.++ +.++.+|+..++.+++.+. ..++||+ .++.
T Consensus 4 ~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~ 79 (101)
T cd02994 4 VELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFF-VTALPTI-YHAK 79 (101)
T ss_pred EEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcC-CcccCEE-EEeC
Confidence 445667777443322 789999999 554333 6779999999888877665 6677777 5667
Q ss_pred CCe
Q psy15246 180 NTE 182 (213)
Q Consensus 180 ~g~ 182 (213)
+|+
T Consensus 80 ~g~ 82 (101)
T cd02994 80 DGV 82 (101)
T ss_pred CCC
Confidence 775
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.69 E-value=0.0005 Score=61.52 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=93.2
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCc-ccccC-CCc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPV-DRVEG-ADP 94 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~-~~~~g-~~~ 94 (213)
-.+++-+.++.+.|+.|..+...++++++.-+ ++.+-..+.. ...|++.+.++|+.. -++.| +..
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence 34556565666689999999999999998776 6776442211 347999998876432 34455 555
Q ss_pred hhHHHHHHHHhccCCCCCCcccccCCCcccccchhh-hhhhheeccC-CCCCCCC-------------CCceEEeccCCH
Q psy15246 95 ESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQE-VREGLKIYSN-WPTYPQV-------------VPYDTFDILQDQ 159 (213)
Q Consensus 95 ~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~-~~~~v~~~ap-WP~~~~~-------------v~~~~~d~~~~~ 159 (213)
.++..||...++- .|.+ ..++....+.+..-. ...+..|++| ||-+|++ +.+..+|....+
T Consensus 84 ~Ef~s~i~~i~~~-~~~~---~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~ 159 (517)
T PRK15317 84 HEFTSLVLALLQV-GGHP---PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ 159 (517)
T ss_pred HHHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH
Confidence 6899999888752 1111 223333333333211 1123345555 4667665 667778888888
Q ss_pred HHHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246 160 EVREGLKIYSNWPTYPQVYVNTELIGG 186 (213)
Q Consensus 160 ~~~~~l~~~~~~pt~p~i~i~g~~~gg 186 (213)
++.+.+. +-++|++|+||+++..
T Consensus 160 ~~~~~~~----v~~VP~~~i~~~~~~~ 182 (517)
T PRK15317 160 DEVEARN----IMAVPTVFLNGEEFGQ 182 (517)
T ss_pred hHHHhcC----CcccCEEEECCcEEEe
Confidence 8766443 3489999999975543
No 222
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.66 E-value=0.00017 Score=46.90 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCc-cccEEEEEeCCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVS-AVPTFVILKNLKP 85 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~-~~Pti~~~~~g~~ 85 (213)
++.|+.+||++|.+.+..|++. ++.+-.+|++.+++.. +..+.. ++|++ |.+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEE
Confidence 5678999999999999988873 4667777887765443 345766 89987 456653
No 223
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.64 E-value=2.1e-05 Score=55.85 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=42.3
Q ss_pred hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246 132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG 185 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g 185 (213)
..+|.|||+| |.++++ +.|.++|+++++++.+.+. +.+.||+ .+|-+|+.++
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~-V~~iPTf-~~fk~G~~v~ 82 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYE-LYDPPTV-MFFFRNKHMK 82 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcC-CCCCCEE-EEEECCEEEE
Confidence 3788999999 545444 5789999999999987776 7789999 8999999774
No 224
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.60 E-value=0.00032 Score=47.25 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=44.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--C------------------------------chhHHHhC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--D------------------------------LPKLSLNY 69 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~------------------------------~~~l~~~~ 69 (213)
+..|+.+.|++|..+.+.++++....++ ++.+...... . +...++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999998866665 5666555432 1 12456788
Q ss_pred CCccccEEEEEe
Q psy15246 70 KVSAVPTFVILK 81 (213)
Q Consensus 70 ~I~~~Pti~~~~ 81 (213)
|+.++||+++..
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999998754
No 225
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.60 E-value=0.00033 Score=46.63 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC--CCcccccC-CCchhHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL--KPVDRVEG-ADPESLD 98 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g--~~~~~~~g-~~~~~l~ 98 (213)
++.|..+.|+-|..+...++++....+ +.+-.||+++++++..+|+. .+|.+.+-..+ .......+ .+.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~---~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP---FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST---CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 678999999999999999998766554 78899999999999999995 79996653211 11122223 3334677
Q ss_pred HHHH
Q psy15246 99 KKLQ 102 (213)
Q Consensus 99 ~~i~ 102 (213)
++|+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7764
No 226
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.60 E-value=0.00026 Score=46.02 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=42.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|+.+||++|++.+..|++. ++.+..+|++++++ +.+..+-..+|++ |.+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5678999999999999988873 56777788887664 5555677889998 4466543
No 227
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.57 E-value=1.6e-05 Score=55.77 Aligned_cols=65 Identities=14% Similarity=0.403 Sum_probs=45.5
Q ss_pred cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246 116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTY 174 (213)
Q Consensus 116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~ 174 (213)
..++.++|+...+.....+|.||||| |.|.++ +.|+.+||+.++++++.++ ..++||+
T Consensus 4 ~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~Ptl 82 (108)
T cd02996 4 VSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR-INKYPTL 82 (108)
T ss_pred EEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC-CCcCCEE
Confidence 34566777744344445789999999 555322 4678999999988887775 6677777
Q ss_pred cceEeCCe
Q psy15246 175 PQVYVNTE 182 (213)
Q Consensus 175 p~i~i~g~ 182 (213)
.+|-+|+
T Consensus 83 -~~~~~g~ 89 (108)
T cd02996 83 -KLFRNGM 89 (108)
T ss_pred -EEEeCCc
Confidence 5677776
No 228
>KOG0910|consensus
Probab=97.55 E-value=8.3e-06 Score=60.09 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=52.5
Q ss_pred cCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246 118 VPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT 181 (213)
Q Consensus 118 ~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g 181 (213)
.+.+.|+ .+.+.+...+|+|||+| |..+++ +++.++|++++.++..... ++-.||+ .+|.||
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~-I~avPtv-lvfknG 125 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYE-ISAVPTV-LVFKNG 125 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcc-eeeeeEE-EEEECC
Confidence 3455565 34456667899999999 544444 7899999999999988777 6777888 789999
Q ss_pred e----EeehHHH
Q psy15246 182 E----LIGGLDI 189 (213)
Q Consensus 182 ~----~~gg~d~ 189 (213)
+ ++|+.|.
T Consensus 126 e~~d~~vG~~~~ 137 (150)
T KOG0910|consen 126 EKVDRFVGAVPK 137 (150)
T ss_pred EEeeeecccCCH
Confidence 7 5566653
No 229
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.54 E-value=0.00011 Score=47.71 Aligned_cols=40 Identities=13% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe-EeehHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE-LIGGLD 188 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~-~~gg~d 188 (213)
+.|..+|+..+++....+++ .|+.++|+++++|+ ++||++
T Consensus 24 i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 24 IAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 89999999999988888886 48899999999875 999987
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.53 E-value=0.0011 Score=59.28 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=90.7
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CCch
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-ADPE 95 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~~~ 95 (213)
.+++-+.++.+.|+.|..+...++++++.-+ ++.+...+.+. ...|++.++.+|+. --++.| +...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~ 85 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGH 85 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcH
Confidence 4455455555579999999999999988776 77775434222 34699999877752 234455 5556
Q ss_pred hHHHHHHHHhccCCCCCCcccccCCCcccccchhhhh-hhheecc-CCCCCCCC-------------CCceEEeccCCHH
Q psy15246 96 SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVR-EGLKIYS-NWPTYPQV-------------VPYDTFDILQDQE 160 (213)
Q Consensus 96 ~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~-~~v~~~a-pWP~~~~~-------------v~~~~~d~~~~~~ 160 (213)
++..||...++- .+.+ ..++....+.+..-... .+..|++ .||-+|++ +....+|....++
T Consensus 86 Ef~s~i~~i~~~-~~~~---~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~ 161 (515)
T TIGR03140 86 EFTSLVLAILQV-GGHG---PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD 161 (515)
T ss_pred HHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH
Confidence 899999887752 2222 22334443333321111 2233444 35666665 5566677777777
Q ss_pred HHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246 161 VREGLKIYSNWPTYPQVYVNTELIGG 186 (213)
Q Consensus 161 ~~~~l~~~~~~pt~p~i~i~g~~~gg 186 (213)
+.+. |. +-++|++|+||++++.
T Consensus 162 ~~~~---~~-v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 162 EVEA---LG-IQGVPAVFLNGEEFHN 183 (515)
T ss_pred HHHh---cC-CcccCEEEECCcEEEe
Confidence 6543 33 3489999999976554
No 231
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.52 E-value=0.0014 Score=49.94 Aligned_cols=131 Identities=15% Similarity=0.249 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC-CCcccccC--CCchhHHHHHHHHhccCCCC
Q psy15246 35 HMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL-KPVDRVEG--ADPESLDKKLQNQASTMKNQ 111 (213)
Q Consensus 35 ~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g-~~~~~~~g--~~~~~l~~~i~~~~~~~kg~ 111 (213)
.....|.++|+.+.+ .+.|+.+. +.++++++++.. |++++|+++ +....+.| .+.++|.+||....-
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~----- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF----- 76 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-----
Confidence 356688999999997 78999887 678999999999 999999974 33334555 455689999999853
Q ss_pred CCcccccCCCcccccchhhhh-hhheeccC-------C--------CCCCCCCCceEEeccCCHHHHHHHHhhcCCCccc
Q psy15246 112 PSNITHVPYDTFDILQDQEVR-EGLKIYSN-------W--------PTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYP 175 (213)
Q Consensus 112 p~~~~~~~~~~f~~l~~~~~~-~~v~~~ap-------W--------P~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p 175 (213)
|. +..++..++..+-+.... .++-++.. | ..+..-+.|+.+|+...++..+.+. ... ..+|
T Consensus 77 P~-v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~-i~~-~~~P 153 (184)
T PF13848_consen 77 PL-VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFG-IDE-DDLP 153 (184)
T ss_dssp TS-CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTT-TTT-SSSS
T ss_pred cc-ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcC-CCC-ccCC
Confidence 22 233444444433222211 11111110 0 1111126789999997777665553 331 3556
Q ss_pred ceE
Q psy15246 176 QVY 178 (213)
Q Consensus 176 ~i~ 178 (213)
++.
T Consensus 154 ~~v 156 (184)
T PF13848_consen 154 ALV 156 (184)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 232
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.50 E-value=0.00055 Score=47.72 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=58.4
Q ss_pred EEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCc-ccc
Q psy15246 4 VQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVS-AVP 75 (213)
Q Consensus 4 ~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~-~~P 75 (213)
..|++ +...+++ +.++++++.=.++.||-+......|++.....++ .+.++.+|+-++++ ++.+|||. .-|
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 35666 3333444 4588999988999999999999999999998885 59999999987664 67899998 679
Q ss_pred EEEEEeCCCCccccc
Q psy15246 76 TFVILKNLKPVDRVE 90 (213)
Q Consensus 76 ti~~~~~g~~~~~~~ 90 (213)
-++++++|+.+....
T Consensus 81 Q~ili~~g~~v~~aS 95 (105)
T PF11009_consen 81 QVILIKNGKVVWHAS 95 (105)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred cEEEEECCEEEEECc
Confidence 999999999876443
No 233
>PHA02278 thioredoxin-like protein
Probab=97.48 E-value=4.6e-05 Score=53.26 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=40.0
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCC----HHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQD----QEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~----~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
....+|.||||| |.++++ ++|..+|++.+ +++.+.++ ..+.||+ .+|-+|+.+
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT~-i~fk~G~~v 85 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPVL-IGYKDGQLV 85 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccEE-EEEECCEEE
Confidence 344789999999 666554 46889999986 56666555 7788999 788999855
No 234
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.47 E-value=3.4e-05 Score=57.74 Aligned_cols=69 Identities=20% Similarity=0.422 Sum_probs=49.0
Q ss_pred ccccCCCcccc-cc-hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcC------
Q psy15246 115 ITHVPYDTFDI-LQ-DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSN------ 170 (213)
Q Consensus 115 ~~~~~~~~f~~-l~-~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~------ 170 (213)
+..++.++|+. +. +....++|.||+|| |.++++ +.|+.+|+++++++++.++ ...
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~-V~~~~~v~~ 108 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR-VSTSPLSKQ 108 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcC-ceecCCcCC
Confidence 34455566663 32 22345799999999 544333 6689999999999988877 444
Q ss_pred CCcccceEeCCeEee
Q psy15246 171 WPTYPQVYVNTELIG 185 (213)
Q Consensus 171 ~pt~p~i~i~g~~~g 185 (213)
+||+ .+|.+|+.++
T Consensus 109 ~PT~-ilf~~Gk~v~ 122 (152)
T cd02962 109 LPTI-ILFQGGKEVA 122 (152)
T ss_pred CCEE-EEEECCEEEE
Confidence 8998 7899998664
No 235
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00043 Score=46.04 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=37.7
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----hHHHhC-CCccccEEEE
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----KLSLNY-KVSAVPTFVI 79 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~I~~~Pti~~ 79 (213)
++.|..++||+|++.+..|.+. ++.+..+|.+.+. +..++. |.+++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678999999999999988853 4666666666544 334444 7899999855
No 236
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.43 E-value=4e-05 Score=61.00 Aligned_cols=82 Identities=15% Similarity=0.369 Sum_probs=57.6
Q ss_pred cccccCCCcccccc-hh----hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCc
Q psy15246 114 NITHVPYDTFDILQ-DQ----EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPT 173 (213)
Q Consensus 114 ~~~~~~~~~f~~l~-~~----~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt 173 (213)
.+..++.++|+.+. .+ +..++|.||+|| |.|+++ +.++.+|++.++++++.+. +.++||
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~-I~~~PT 109 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFA-IKGYPT 109 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcC-CCcCCE
Confidence 35667778887443 21 345899999999 555554 6788999999999888776 778899
Q ss_pred ccceEeCCeEe---eh---HHHHHHHHHcC
Q psy15246 174 YPQVYVNTELI---GG---LDIIKELQVAN 197 (213)
Q Consensus 174 ~p~i~i~g~~~---gg---~d~~~~~~~~~ 197 (213)
+ .+|.+|+.+ +| .+.+.+..+.+
T Consensus 110 l-~~f~~G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 110 L-LLFDKGKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred E-EEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence 8 678889865 34 45555554433
No 237
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.41 E-value=0.00061 Score=53.61 Aligned_cols=41 Identities=12% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEe
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCI 58 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd 58 (213)
.+++-||+|+.-.||||..+.+.+ +.+.+.+++ ++.+..+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 357789999999999999999876 778888876 55555443
No 238
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.29 E-value=8.3e-05 Score=51.10 Aligned_cols=66 Identities=15% Similarity=0.348 Sum_probs=49.1
Q ss_pred ccCCCccccc-chhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246 117 HVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN 180 (213)
Q Consensus 117 ~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~ 180 (213)
.++..+|+.. .+.....+|.||++| |.+.++ +.|+.+|+.++.++++.+. ..++||+ .+|.+
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~ 80 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYG-VKSVPTI-IFFKN 80 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTT-CSSSSEE-EEEET
T ss_pred ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccC-CCCCCEE-EEEEC
Confidence 3456677633 333556889999999 444333 7889999999988888777 7789998 78888
Q ss_pred CeEe
Q psy15246 181 TELI 184 (213)
Q Consensus 181 g~~~ 184 (213)
|+.+
T Consensus 81 g~~~ 84 (103)
T PF00085_consen 81 GKEV 84 (103)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8755
No 239
>PRK10638 glutaredoxin 3; Provisional
Probab=97.22 E-value=0.0013 Score=43.92 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=40.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
++.|..+||++|++.+..+++. ++.+..+|++.+++ +.+..+...+|++ +.+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5578889999999999988874 45566677776553 4455688899987 4466543
No 240
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.22 E-value=0.0016 Score=45.00 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=36.3
Q ss_pred CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCCc
Q psy15246 28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~~ 86 (213)
||||+|++.+..|.++ ++.+..+|+++++++ .+..|..++|.+ |.+|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 9999999999988875 355667788766543 345577789987 4566543
No 241
>KOG0912|consensus
Probab=97.19 E-value=9.5e-05 Score=60.41 Aligned_cols=64 Identities=19% Similarity=0.496 Sum_probs=46.8
Q ss_pred CCcccccchhhhhhhheeccCC--------CCCCCC------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246 120 YDTFDILQDQEVREGLKIYSNW--------PTYPQV------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV 179 (213)
Q Consensus 120 ~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i 179 (213)
..+++.+-+.....+|.|||.| |.|++. +-.|.|||+.+..+..... ++.|||+ .+|.
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~-I~KyPTl-Kvfr 80 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYH-INKYPTL-KVFR 80 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhc-cccCcee-eeee
Confidence 3455533333334899999999 444333 6679999999888877776 7899999 7999
Q ss_pred CCeEee
Q psy15246 180 NTELIG 185 (213)
Q Consensus 180 ~g~~~g 185 (213)
||...-
T Consensus 81 nG~~~~ 86 (375)
T KOG0912|consen 81 NGEMMK 86 (375)
T ss_pred ccchhh
Confidence 998554
No 242
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.17 E-value=0.0012 Score=44.79 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=35.8
Q ss_pred CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCC
Q psy15246 28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKP 85 (213)
Q Consensus 28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~ 85 (213)
|||++|++.+..|++. ++.+..+|++.++++ .+..|-.++|.+ |.+|+.
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 7999999999988885 355666676665544 445688899997 456754
No 243
>KOG3170|consensus
Probab=97.15 E-value=0.0024 Score=49.28 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=69.5
Q ss_pred eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
|..|+. ++..++. +.+-.|+|+.|...-+.|.-+...++.++..|+ .++|+++=.+.. ...|-=...||+++
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~c---IpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTC---IPNYPESNLPTLLV 167 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEecccccc---cCCCcccCCCeEEE
Confidence 667766 4555553 556677889999999999999999999999999 799998865543 22344567899999
Q ss_pred EeCCCCccc------ccCCCch--hHHHHHHHH
Q psy15246 80 LKNLKPVDR------VEGADPE--SLDKKLQNQ 104 (213)
Q Consensus 80 ~~~g~~~~~------~~g~~~~--~l~~~i~~~ 104 (213)
|..|..... ++|.+.. ++..++-+.
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999865443 3344332 566555443
No 244
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.14 E-value=0.00015 Score=49.46 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=39.8
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
+...+|.||+|| |.++++ +.++.+|++.++++++.++ ..++||+ .+|-+|+.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~~~g~~~ 79 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFG-VQALPTV-YLFAAGQPV 79 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcC-CCCCCEE-EEEeCCEEe
Confidence 445889999999 444333 5679999999999988776 6678888 566788654
No 245
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.12 E-value=0.00019 Score=50.75 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=39.4
Q ss_pred hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
+..++|.||+|| |.+.++ +.++.+|+..++++++.+. ..++||+ .+|.+|+.+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~-V~~~Pt~-~i~~~g~~~ 92 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLG-AHSVPAI-VGIINGQVT 92 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcC-CccCCEE-EEEECCEEE
Confidence 445899999999 444333 5679999999888876665 6677887 677888755
No 246
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.10 E-value=0.0049 Score=42.34 Aligned_cols=97 Identities=16% Similarity=0.054 Sum_probs=67.8
Q ss_pred EeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCc----cccE-
Q psy15246 5 QISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVS----AVPT- 76 (213)
Q Consensus 5 ~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~----~~Pt- 76 (213)
.|++ ..+...+.....++|.|..+--..-.. ...+.++|+..+| .-.++.|||.. ...+|+++.|. --|.
T Consensus 5 ~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 5 DISDHKDFKKLLRTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccchHHHHHHHhhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 4566 445555667777888777666554444 4489999999998 78899999987 77899999998 5553
Q ss_pred EEEEeCCCCcccccCCCch-hHHHHHHH
Q psy15246 77 FVILKNLKPVDRVEGADPE-SLDKKLQN 103 (213)
Q Consensus 77 i~~~~~g~~~~~~~g~~~~-~l~~~i~~ 103 (213)
+.-|++|.-...+...... ++..|++.
T Consensus 83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCccccccchhhHHHHHHHhhC
Confidence 5567888755544443333 67777653
No 247
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.09 E-value=0.00016 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.438 Sum_probs=42.7
Q ss_pred ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccC--CHHHHHHHHhhcCCCcccceE
Q psy15246 117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY 178 (213)
Q Consensus 117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~ 178 (213)
.++.++|+ .+.+.+...+|.||+|| |.+.++ +.++.+|+.. +.++++.+. ..++||+ .+|
T Consensus 4 ~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~-i~~~Pt~-~~~ 81 (109)
T cd03002 4 ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYG-VQGFPTL-KVF 81 (109)
T ss_pred EcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcC-CCcCCEE-EEE
Confidence 34556666 33344444889999999 444333 5778899998 677777665 6667777 566
Q ss_pred eCCe
Q psy15246 179 VNTE 182 (213)
Q Consensus 179 i~g~ 182 (213)
-+|+
T Consensus 82 ~~~~ 85 (109)
T cd03002 82 RPPK 85 (109)
T ss_pred eCCC
Confidence 6664
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=9.8e-05 Score=60.29 Aligned_cols=69 Identities=17% Similarity=0.364 Sum_probs=51.0
Q ss_pred cccCCCccc--ccch-hhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246 116 THVPYDTFD--ILQD-QEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQV 177 (213)
Q Consensus 116 ~~~~~~~f~--~l~~-~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i 177 (213)
..++..+|. ++.. .....+|.||+|| |+.+++ ..++++||+.++.+...+. +...||+ .+
T Consensus 26 ~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfg-iqsIPtV-~a 103 (304)
T COG3118 26 KDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFG-VQSIPTV-YA 103 (304)
T ss_pred eechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhC-cCcCCeE-EE
Confidence 455667776 3332 3446889999999 444444 6779999999999988887 6778888 78
Q ss_pred EeCCeEeeh
Q psy15246 178 YVNTELIGG 186 (213)
Q Consensus 178 ~i~g~~~gg 186 (213)
|++|+-|-|
T Consensus 104 f~dGqpVdg 112 (304)
T COG3118 104 FKDGQPVDG 112 (304)
T ss_pred eeCCcCccc
Confidence 899985544
No 249
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.04 E-value=0.00056 Score=43.69 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=36.9
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDI 189 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~ 189 (213)
++|..+|+..+.+..+.+.+.++..++|+++++|+.++|.+.
T Consensus 25 i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 25 IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 788999998888888888877788899999999999999874
No 250
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.01 E-value=0.00014 Score=51.57 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHH
Q psy15246 131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIK 191 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~ 191 (213)
...+|.||+|| |.++++ +.|..+|+..+ ++.+.+. ..+.||+ .+|.+|+.++-.....
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~-i~~~Pt~-~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLD-IKVLPTL-LVYKNGELIDNIVGFE 96 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcC-CCcCCEE-EEEECCEEEEEEecHH
Confidence 44778999999 333333 67889999877 7766665 6778888 7889998776444333
No 251
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.98 E-value=0.00019 Score=49.36 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=43.1
Q ss_pred ccCCCcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246 117 HVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY 178 (213)
Q Consensus 117 ~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~ 178 (213)
.++.++|+...... ..+|.||++| |.+.++ +.++.+|++.+..+++.+. ..++||+ .+|
T Consensus 4 ~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~ 80 (102)
T cd03005 4 ELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQ-VRGYPTL-LLF 80 (102)
T ss_pred ECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcC-CCcCCEE-EEE
Confidence 34556666333333 3889999999 444333 5679999999888877765 6677777 566
Q ss_pred eCCeE
Q psy15246 179 VNTEL 183 (213)
Q Consensus 179 i~g~~ 183 (213)
.+|+.
T Consensus 81 ~~g~~ 85 (102)
T cd03005 81 KDGEK 85 (102)
T ss_pred eCCCe
Confidence 77763
No 252
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.96 E-value=0.00089 Score=42.49 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=27.1
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg 186 (213)
+.|..+|+.+++++.+. .+..++|+++++|++++-
T Consensus 31 i~~~~id~~~~~~l~~~----~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 31 ISAEMIDAAEFPDLADE----YGVMSVPAIVINGKVEFV 65 (67)
T ss_pred eEEEEEEcccCHhHHHH----cCCcccCEEEECCEEEEe
Confidence 67888999888765443 456789999999998763
No 253
>PRK09381 trxA thioredoxin; Provisional
Probab=96.95 E-value=0.00029 Score=49.33 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=43.5
Q ss_pred ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246 117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN 180 (213)
Q Consensus 117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~ 180 (213)
.++..+|. .+.+....++|.||+|| |.+.++ +.++.+|++.++.+.+.+. ..++||+ .+|-+
T Consensus 7 ~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~ 84 (109)
T PRK09381 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLFKN 84 (109)
T ss_pred eeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCC-CCcCCEE-EEEeC
Confidence 34445555 22333445899999999 333332 6789999999888766554 5556665 45678
Q ss_pred CeEee
Q psy15246 181 TELIG 185 (213)
Q Consensus 181 g~~~g 185 (213)
|+.++
T Consensus 85 G~~~~ 89 (109)
T PRK09381 85 GEVAA 89 (109)
T ss_pred CeEEE
Confidence 88663
No 254
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.95 E-value=0.00019 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=40.2
Q ss_pred CCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246 119 PYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT 181 (213)
Q Consensus 119 ~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g 181 (213)
+..+|+ .+.+.....+|.||+|| |.|.++ +.++.+|+..++++++.+. ..++||+ .+|.+|
T Consensus 6 ~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-i~~~P~~-~~~~~~ 82 (103)
T cd03001 6 TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYG-VRGFPTI-KVFGAG 82 (103)
T ss_pred CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCC-CCccCEE-EEECCC
Confidence 445555 22333334788999999 333332 6789999999888887765 5667776 456666
No 255
>PTZ00051 thioredoxin; Provisional
Probab=96.93 E-value=0.00014 Score=49.86 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=40.6
Q ss_pred hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246 130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL 187 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~ 187 (213)
+...+|.||++| |.+.++ +.|..+|+....++++.+. +.+.||+ .+|.+|+.++.+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~~~ 87 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKEN-ITSMPTF-KVFKNGSVVDTL 87 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCC-CceeeEE-EEEeCCeEEEEE
Confidence 345788999999 333332 6788999988888877766 6788888 688889766443
No 256
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.90 E-value=0.0025 Score=42.42 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=36.2
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD 188 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d 188 (213)
+.|..+|++.+++..+.++. .++.++|+++++|+.++|++
T Consensus 26 I~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 26 FDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred CceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 89999999999888888875 58899999999999999987
No 257
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.87 E-value=0.0034 Score=46.22 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd 58 (213)
..+..++.|+.++||+|+++.+.+.++...++ ++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEe
Confidence 46788999999999999999999999887775 55555444
No 258
>KOG0907|consensus
Probab=96.82 E-value=0.00052 Score=48.19 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=41.5
Q ss_pred hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----EeehH
Q psy15246 131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGGL 187 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg~ 187 (213)
....|.|||+| |.+.++ +.|.++|+++..++++.+. ....||| +++.+|+ ++|+-
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~-V~~~PTf-~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFN-VKAMPTF-VFYKGGEEVDEVVGAN 94 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcC-ceEeeEE-EEEECCEEEEEEecCC
Confidence 34578899999 555444 8899999999777777776 6678999 7888886 55543
No 259
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.82 E-value=0.00053 Score=47.73 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=36.0
Q ss_pred hhhhheeccCC--------CCCCCC------CCceEEeccCCH---HHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQ---EVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~---~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
...+|.|||+| |.+.++ +.|..+|+++++ ++.+.++ ..+.||+ .+|.+|+.+
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~-V~~~Pt~-~~~~~G~~v 84 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREK-IIEVPHF-LFYKDGEKI 84 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcC-CCcCCEE-EEEeCCeEE
Confidence 34788999999 444433 678999988875 3444443 5678887 677889754
No 260
>PRK10996 thioredoxin 2; Provisional
Probab=96.80 E-value=0.00036 Score=51.42 Aligned_cols=53 Identities=15% Similarity=0.480 Sum_probs=39.7
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
+..++|.||++| |.+.++ +.|..+|+..++++.+.++ ..++||+ .+|.+|+.+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-V~~~Ptl-ii~~~G~~v 119 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFR-IRSIPTI-MIFKNGQVV 119 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcC-CCccCEE-EEEECCEEE
Confidence 344788999999 333333 6778899999998877776 6788888 678889844
No 261
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.77 E-value=0.00055 Score=48.60 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=40.6
Q ss_pred hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246 132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG 185 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g 185 (213)
..+|.||+|| |.++++ ++|.++|+...+++.+.+. ..+.||+ .+|.+|+.++
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~-v~~vPt~-l~fk~G~~v~ 89 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLN-IKVLPTV-ILFKNGKTVD 89 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCC-CccCCEE-EEEECCEEEE
Confidence 4788999999 333332 7899999999998887776 6788999 7888998554
No 262
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.76 E-value=0.00068 Score=46.40 Aligned_cols=56 Identities=18% Similarity=0.475 Sum_probs=36.2
Q ss_pred hhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----Eeeh
Q psy15246 129 QEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGG 186 (213)
Q Consensus 129 ~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg 186 (213)
.....+|.||++| |.++++ +.++.+|++.+.++++.+. +.++|++ .+|-+|+ +.|.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-i~~~P~~-~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFG-VSGFPTI-KFFPKGKKPVDYEGG 88 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCC-CCcCCEE-EEecCCCcceeecCC
Confidence 3445788999999 333222 5578889999888887765 5555655 3444455 6663
No 263
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.72 E-value=0.00036 Score=48.43 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.9
Q ss_pred hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246 130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL 183 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~ 183 (213)
+...+|.|||+| |.+.++ +.|..+|++ +++..+.+. ..+.||+ .+|-+|+.
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~-v~~~Pt~-~~~~~g~~ 83 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYR-GKCEPTF-LFYKNGEL 83 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcC-CCcCcEE-EEEECCEE
Confidence 334788999999 333222 457888888 566655554 5678888 78888974
No 264
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.54 E-value=0.00064 Score=46.84 Aligned_cols=65 Identities=15% Similarity=0.423 Sum_probs=41.4
Q ss_pred cCCCcccccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccC--CHHHHHHHHhhcCCCcccceE
Q psy15246 118 VPYDTFDILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY 178 (213)
Q Consensus 118 ~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~ 178 (213)
++..+|+.+.......+|.||++| |.+.++ +.++.+|+.. ++.+++.+. +.++||+ .+|
T Consensus 5 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~Pt~-~~~ 82 (104)
T cd02997 5 LTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYN-VKGFPTF-KYF 82 (104)
T ss_pred echHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCC-CccccEE-EEE
Confidence 344555533233335789999999 333222 4578889988 677777665 5677776 567
Q ss_pred eCCeEe
Q psy15246 179 VNTELI 184 (213)
Q Consensus 179 i~g~~~ 184 (213)
-+|+.+
T Consensus 83 ~~g~~~ 88 (104)
T cd02997 83 ENGKFV 88 (104)
T ss_pred eCCCee
Confidence 777744
No 265
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.52 E-value=0.0064 Score=52.87 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=43.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH---Hh---------CCCccccEEEEEeCCCCcccc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS---LN---------YKVSAVPTFVILKNLKPVDRV 89 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~I~~~Pti~~~~~g~~~~~~ 89 (213)
++.|..+|||+|++.+..+++. ++.+-.+|++++++.. ++ .|.+++|++.+ +|+. .
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~---i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH---I 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE---E
Confidence 6779999999999999888874 5777788888766322 22 47789999855 5543 3
Q ss_pred cCCCc
Q psy15246 90 EGADP 94 (213)
Q Consensus 90 ~g~~~ 94 (213)
+|.+.
T Consensus 72 gGf~~ 76 (410)
T PRK12759 72 GGYDN 76 (410)
T ss_pred eCchH
Confidence 45543
No 266
>PRK10824 glutaredoxin-4; Provisional
Probab=96.46 E-value=0.0076 Score=42.89 Aligned_cols=50 Identities=10% Similarity=-0.018 Sum_probs=33.1
Q ss_pred CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCccccEEEEEeCCCCc
Q psy15246 28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~~~ 86 (213)
||||+|++....|..+. +.+..+|.+.++++. +.-|-..+|.+ |-+|+.+
T Consensus 28 p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 69999999999888863 333445665555443 33466677775 5577655
No 267
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.44 E-value=0.089 Score=36.35 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=62.7
Q ss_pred ceEEeCCch-hhhhhc-CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 2 SVVQISEEL-DVEKYG-KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 2 ~v~~l~~~~-~~~~~~-~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
++.+|++.. ....+. .+..++|-|+..--+ .....|.++|..+++ .+.|+... +.++...+++. .|++++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 1 PVEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred CceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 456777744 444456 677777777766444 355688999999975 67886533 45677888775 688999
Q ss_pred EeC-CCCcccc-cCC-CchhHHHHHHHH
Q psy15246 80 LKN-LKPVDRV-EGA-DPESLDKKLQNQ 104 (213)
Q Consensus 80 ~~~-g~~~~~~-~g~-~~~~l~~~i~~~ 104 (213)
+++ ......+ .|. +.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 975 3332334 554 444799998764
No 268
>KOG1752|consensus
Probab=96.35 E-value=0.019 Score=40.13 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=39.1
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-h----HHHhCCCccccEEEEEeCCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-K----LSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~----l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
+|.|..+||+.|++++..|.+ +.. ...++.+|-+.+. + +.+.-+-+.+|.+ |-+|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEE
Confidence 345999999999998888888 332 4566777766543 2 3333456788986 4477655
No 269
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.33 E-value=0.0006 Score=48.43 Aligned_cols=64 Identities=16% Similarity=0.345 Sum_probs=39.2
Q ss_pred ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccC--CHHHHHHHHhhcCCCccc
Q psy15246 117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQ--DQEVREGLKIYSNWPTYP 175 (213)
Q Consensus 117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p 175 (213)
.++..+|+ .+.+....++|.||+|| |.|.++ +.++.+||.. +.++++.++ ..++||+
T Consensus 5 ~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~-i~~~Pt~- 82 (114)
T cd02992 5 VLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFG-VTGYPTL- 82 (114)
T ss_pred ECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCC-CCCCCEE-
Confidence 34556666 33333345899999999 444333 5668889865 355666554 5566776
Q ss_pred ceEeCCe
Q psy15246 176 QVYVNTE 182 (213)
Q Consensus 176 ~i~i~g~ 182 (213)
.+|-+|+
T Consensus 83 ~lf~~~~ 89 (114)
T cd02992 83 RYFPPFS 89 (114)
T ss_pred EEECCCC
Confidence 4555554
No 270
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.20 E-value=0.00099 Score=46.79 Aligned_cols=65 Identities=14% Similarity=0.315 Sum_probs=39.4
Q ss_pred cccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEeccC-CHHHHHHHHhhcCCCccc
Q psy15246 116 THVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQ-DQEVREGLKIYSNWPTYP 175 (213)
Q Consensus 116 ~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~-~~~~~~~l~~~~~~pt~p 175 (213)
..++..+|+.+. +....++|.||+|| |.|.++ +.++.+|++. +..++....+..++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti- 82 (109)
T cd02993 4 VTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI- 82 (109)
T ss_pred eeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE-
Confidence 344556666333 23456899999999 444333 4578899987 45555443335566776
Q ss_pred ceEeCC
Q psy15246 176 QVYVNT 181 (213)
Q Consensus 176 ~i~i~g 181 (213)
.+|.+|
T Consensus 83 ~~f~~~ 88 (109)
T cd02993 83 LFFPKN 88 (109)
T ss_pred EEEcCC
Confidence 455555
No 271
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.17 E-value=0.083 Score=36.69 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=60.4
Q ss_pred eEEeCCch-hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246 3 VVQISEEL-DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 3 v~~l~~~~-~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~ 81 (213)
+.++++.. ....+...+.++|-|+..--. .....|.++|..+++ ++.|+... +.+++..+++ .|++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---DKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence 45666633 344466777778777766444 456788899999976 68886544 4577888988 68888883
Q ss_pred C------C-CCcccccC-CCchhHHHHHHHH
Q psy15246 82 N------L-KPVDRVEG-ADPESLDKKLQNQ 104 (213)
Q Consensus 82 ~------g-~~~~~~~g-~~~~~l~~~i~~~ 104 (213)
. - .....+.| .+.++|.+||...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2 1 11122455 3444799998764
No 272
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.16 E-value=0.0014 Score=44.66 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=38.1
Q ss_pred hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
...+|.||++| |.++++ +.+..+|+...+++.+.+. ..+.||+ .+|.+|+.+
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFE-ITAVPTF-VFFRNGTIV 81 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcC-CccccEE-EEEECCEEE
Confidence 44778899999 333322 6778889888888877776 6778887 677888743
No 273
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.15 E-value=0.0015 Score=57.38 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=45.8
Q ss_pred ccccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCH-HHH-HHHHhhcCCCc
Q psy15246 115 ITHVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQ-EVR-EGLKIYSNWPT 173 (213)
Q Consensus 115 ~~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~-~~~-~~l~~~~~~pt 173 (213)
+..++.++|+.+. +....++|.||+|| |.|+++ +.|+.+|++.++ +.. +.++ +.++||
T Consensus 353 Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~-I~~~PT 431 (463)
T TIGR00424 353 VVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ-LGSFPT 431 (463)
T ss_pred eEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC-CCccce
Confidence 5667788888332 34555899999999 666555 457889999763 333 3444 678898
Q ss_pred ccceEeCCe
Q psy15246 174 YPQVYVNTE 182 (213)
Q Consensus 174 ~p~i~i~g~ 182 (213)
+ .+|.+|.
T Consensus 432 i-i~Fk~g~ 439 (463)
T TIGR00424 432 I-LFFPKHS 439 (463)
T ss_pred E-EEEECCC
Confidence 8 7788774
No 274
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.14 E-value=0.0018 Score=44.86 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=34.4
Q ss_pred hhhhhheeccCC--------CCCCCC------CCceEEecc-CCHHHHHHHHhhcCCCcccceEeCC
Q psy15246 130 EVREGLKIYSNW--------PTYPQV------VPYDTFDIL-QDQEVREGLKIYSNWPTYPQVYVNT 181 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~-~~~~~~~~l~~~~~~pt~p~i~i~g 181 (213)
+...+|.||||| |.++++ +.+..+|+. .++++++.++ ..++||+ .+|-+|
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~-V~~~PT~-~lf~~g 82 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYG-VVGFPTI-LLFNST 82 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcC-CeecCEE-EEEcCC
Confidence 334789999999 444444 677888988 6777776665 5667777 455555
No 275
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.045 Score=41.05 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=44.8
Q ss_pred cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc
Q psy15246 16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA 73 (213)
Q Consensus 16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~ 73 (213)
-.++.+|++|| ..++|-|-...-.|++...++...++.++.|..+ .+.++++.|||..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 35678999999 7899999999999999888887556677767643 4566788888754
No 276
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.11 E-value=0.0012 Score=45.30 Aligned_cols=63 Identities=21% Similarity=0.438 Sum_probs=37.9
Q ss_pred ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246 117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY 178 (213)
Q Consensus 117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~ 178 (213)
.++.++|+ .+.+.....+|.||+|| |.+.++ +.++.+|++.+ +.+..+. ..++||+ .+|
T Consensus 4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~-~~~~Pt~-~~~ 80 (104)
T cd02995 4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFV-VDGFPTI-LFF 80 (104)
T ss_pred EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhcc-CCCCCEE-EEE
Confidence 34566676 33444455788999999 444333 56688999886 3444333 3556666 455
Q ss_pred eCCe
Q psy15246 179 VNTE 182 (213)
Q Consensus 179 i~g~ 182 (213)
.+|+
T Consensus 81 ~~~~ 84 (104)
T cd02995 81 PAGD 84 (104)
T ss_pred cCCC
Confidence 5554
No 277
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.11 E-value=0.0033 Score=43.58 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=33.3
Q ss_pred CcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246 121 DTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTY 174 (213)
Q Consensus 121 ~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~ 174 (213)
++|+.+.. ...++|.||++| |.+.++ +.++.+|+...+++++.+. ..++||+
T Consensus 7 ~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-I~~~Pt~ 76 (104)
T cd03000 7 DSFKDVRK-EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFG-VRGYPTI 76 (104)
T ss_pred hhhhhhcc-CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcC-CccccEE
Confidence 34443333 335889999999 444333 4457789988887776555 5566666
No 278
>PTZ00062 glutaredoxin; Provisional
Probab=96.07 E-value=0.021 Score=44.91 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH----hCCCccccEEEEEeCCCCc
Q psy15246 27 ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL----NYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 27 a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~----~~~I~~~Pti~~~~~g~~~ 86 (213)
+|+|+.|++....|++. ++.+..+|++++.++.+ ..+-..+|.+. -+|+.+
T Consensus 125 ~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~I 179 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELI 179 (204)
T ss_pred CCCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 37999999999888864 46677788877665433 34666778764 467543
No 279
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.99 E-value=0.0022 Score=44.03 Aligned_cols=61 Identities=20% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCCccc-ccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccC-CHHHHHHHHhhcCCCcccceEe
Q psy15246 119 PYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQ-DQEVREGLKIYSNWPTYPQVYV 179 (213)
Q Consensus 119 ~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~-~~~~~~~l~~~~~~pt~p~i~i 179 (213)
+..+|+ .+.+.....+|.||++| |.+..+ +.++.+|+.. ++++++.++ ..++|++ .+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~-i~~~P~~-~~~~ 83 (105)
T cd02998 6 TDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYG-VSGFPTL-KFFP 83 (105)
T ss_pred chhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCC-CCCcCEE-EEEe
Confidence 444554 33333434788999999 333221 4578899999 888888876 5667766 4555
Q ss_pred CC
Q psy15246 180 NT 181 (213)
Q Consensus 180 ~g 181 (213)
+|
T Consensus 84 ~~ 85 (105)
T cd02998 84 KG 85 (105)
T ss_pred CC
Confidence 55
No 280
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.98 E-value=0.0027 Score=44.97 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=40.3
Q ss_pred hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
....|.|+++| |.++++ +.|..+|+++.+++.+.+. +...||+ .+|-+|+++
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtf-vffkngkh~ 81 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPST-IFFFNGQHM 81 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEE-EEEECCcEE
Confidence 34678899999 444333 6689999999999988777 6668999 488889876
No 281
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.96 E-value=0.0073 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCceEEeccCCHHHHHHHHhhc-CCCcccceEe-CCeEeehHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYS-NWPTYPQVYV-NTELIGGLD 188 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~-~~pt~p~i~i-~g~~~gg~d 188 (213)
+.|..+|+..+++....+..++ +..++|++++ +|+++....
T Consensus 25 ~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 25 AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 7888999999888888887776 7889999976 567665443
No 282
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.95 E-value=0.0041 Score=42.25 Aligned_cols=51 Identities=12% Similarity=0.366 Sum_probs=33.3
Q ss_pred hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
..+|.||++| |.+.++ +.|..+|++.++++++.+. +.++||+ .+|-+|+.+
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~P~~-~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYG-IRSIPTL-LLFKNGKEV 81 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcC-CCcCCEE-EEEeCCcEe
Confidence 4677888988 222222 7889999999888776664 4455555 344567644
No 283
>KOG4023|consensus
Probab=95.81 E-value=0.011 Score=40.38 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCceEEeccCCHHHHHH--------HHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246 148 VPYDTFDILQDQEVREG--------LKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS 209 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~--------l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~ 209 (213)
+.|..+|++...+.+++ .+-..|.|.-||||-..+.-|++|...+..+++-|.++|.-.|-.
T Consensus 33 i~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 33 IGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELFFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred CCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 67788888877665554 344568899999999999999999999999999999999877643
No 284
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.73 E-value=0.065 Score=34.69 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=48.8
Q ss_pred EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
.+..|-+...+.+++....+.++.+++-+..+.+-.||..++++++..++|-.+||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 3455666666889998889999888765437999999999999999999999999975
No 285
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.72 E-value=0.0036 Score=48.02 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.9
Q ss_pred hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246 132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG 185 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g 185 (213)
..+|.||+|| |.+.++ ++|..+|+... ++...+. ....||+ .+|.+|+.++
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~-v~~vPTl-llyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFD-TDALPAL-LVYKGGELIG 149 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCC-CCCCCEE-EEEECCEEEE
Confidence 5788999999 333333 78899999875 5555544 5578888 7889998775
No 286
>PLN02309 5'-adenylylsulfate reductase
Probab=95.65 E-value=0.0021 Score=56.37 Aligned_cols=67 Identities=13% Similarity=0.291 Sum_probs=45.3
Q ss_pred ccccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEecc-CCHHHHHHHHhhcCCCcc
Q psy15246 115 ITHVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDIL-QDQEVREGLKIYSNWPTY 174 (213)
Q Consensus 115 ~~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~-~~~~~~~~l~~~~~~pt~ 174 (213)
+..++..+|+.+. +....++|.||+|| |.|.++ +.|+.+|++ .+.+++..-.++.++||+
T Consensus 347 Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTi 426 (457)
T PLN02309 347 VVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 426 (457)
T ss_pred cEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEE
Confidence 4556777776332 34455899999999 555444 678999999 666666532236778888
Q ss_pred cceEeCCe
Q psy15246 175 PQVYVNTE 182 (213)
Q Consensus 175 p~i~i~g~ 182 (213)
.+|.+|.
T Consensus 427 -l~f~~g~ 433 (457)
T PLN02309 427 -LLFPKNS 433 (457)
T ss_pred -EEEeCCC
Confidence 6777664
No 287
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.32 E-value=0.0062 Score=41.65 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=36.4
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
....++.|+++| |.+.++ +.+..+|+++++++.+.++ ..+.||+ .+|-+|+.+
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~-v~~vPt~-~i~~~g~~v 80 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAG-IMGTPTV-QFFKDKELV 80 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCC-CeeccEE-EEEECCeEE
Confidence 334678888998 222221 5678999999888877666 5667777 566778755
No 288
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.23 E-value=0.027 Score=36.81 Aligned_cols=31 Identities=10% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE 182 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~ 182 (213)
+.+..+|+.++++..+. .+.+++|+++++|+
T Consensus 32 ~~~~~vd~~~~~~~~~~----~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 32 VEVEYINVMENPQKAME----YGIMAVPAIVINGD 62 (82)
T ss_pred eEEEEEeCccCHHHHHH----cCCccCCEEEECCE
Confidence 56788999888766543 35667888889986
No 289
>KOG2640|consensus
Probab=95.20 E-value=0.0072 Score=49.74 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=68.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-CCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP 94 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~ 94 (213)
++...+-+.||+.||+..+..+|.+.-....++ .++...++ ...-+++..+|++.+.|++++...--+..+....+-
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL 151 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH
Confidence 346678889999999999999999998888887 45444443 334678899999999999998766555544444555
Q ss_pred hhHHHHHHHHhc
Q psy15246 95 ESLDKKLQNQAS 106 (213)
Q Consensus 95 ~~l~~~i~~~~~ 106 (213)
.+|+++..+.+.
T Consensus 152 ~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 152 ASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHhhcc
Confidence 689999888864
No 290
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.19 E-value=0.0099 Score=43.91 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=37.2
Q ss_pred hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246 132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE 182 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~ 182 (213)
..+|.|||+| |.++++ +.|..+|+++.+++.+.+. +.+.||+-.+|-+|+
T Consensus 25 lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~-I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 25 LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYE-LYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcC-ccCCCcEEEEEECCe
Confidence 3778999999 444443 6678999999999988877 445555546778887
No 291
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=94.95 E-value=0.48 Score=32.37 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CCch
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-ADPE 95 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~~~ 95 (213)
+...++.|..+. ..|..+...++++++.-+ ++.+-..+..+ ..|++.+..+|+. --++.| +...
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 344455565555 999999999999988766 67665433221 4799999887743 123444 4555
Q ss_pred hHHHHHHHH
Q psy15246 96 SLDKKLQNQ 104 (213)
Q Consensus 96 ~l~~~i~~~ 104 (213)
++..+|...
T Consensus 85 Ef~Slilai 93 (94)
T cd02974 85 EFTSLVLAL 93 (94)
T ss_pred hHHHHHHHh
Confidence 788877654
No 292
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.64 E-value=0.033 Score=36.51 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=33.9
Q ss_pred hhhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246 132 REGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE 182 (213)
Q Consensus 132 ~~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~ 182 (213)
..+|.|+++| |.+.++ +.|..+|+..+.++.+.++ ..+.||+ .+|-+|+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~P~~-~~~~~g~ 74 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG-VRSIPTF-LFFKNGK 74 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcC-cccccEE-EEEECCE
Confidence 3567788887 222111 7889999999888877776 5667776 4666787
No 293
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=94.62 E-value=0.026 Score=39.87 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=27.1
Q ss_pred hhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246 133 EGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV 179 (213)
Q Consensus 133 ~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i 179 (213)
..|.|+++| |.+..+ +.|..+|+..++++.+.++ + .++|++++
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~-v---~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYG-V---ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcC-C---CcCCEEEE
Confidence 345567888 444333 5788999998887765544 3 45555555
No 294
>KOG0914|consensus
Probab=94.51 E-value=0.017 Score=45.39 Aligned_cols=57 Identities=14% Similarity=0.364 Sum_probs=41.3
Q ss_pred hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhc---CCCcccceEeCCeEeehHH
Q psy15246 128 DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYS---NWPTYPQVYVNTELIGGLD 188 (213)
Q Consensus 128 ~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~---~~pt~p~i~i~g~~~gg~d 188 (213)
|...-|+|.||+.| |.|+.+ .+||++|+...+++.+..+ +| +-...|++-+ |.+|-+
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfr-is~s~~srQLPT~il---Fq~gkE 217 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFR-ISLSPGSRQLPTYIL---FQKGKE 217 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhee-eccCcccccCCeEEE---Eccchh
Confidence 44456999999999 666666 8999999999988877776 33 3456666655 445544
No 295
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.093 Score=47.84 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=57.8
Q ss_pred hhhhhhcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCCchhHHHhCC--------CccccEEE
Q psy15246 10 LDVEKYGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAEDLPKLSLNYK--------VSAVPTFV 78 (213)
Q Consensus 10 ~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~--------I~~~Pti~ 78 (213)
.+...-..++|++|-...+||.-|+-|... | .++|+.+.. +++-++||-++-|++-+.|. --+.|..+
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtV 113 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTV 113 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhccCCCCceeE
Confidence 344455789999999999999999998763 3 456666665 78889999999888776663 55899666
Q ss_pred EE-eCCCCc
Q psy15246 79 IL-KNLKPV 86 (213)
Q Consensus 79 ~~-~~g~~~ 86 (213)
|+ .+|+++
T Consensus 114 fLTPd~kPF 122 (667)
T COG1331 114 FLTPDGKPF 122 (667)
T ss_pred EECCCCcee
Confidence 66 477765
No 296
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.46 E-value=0.19 Score=34.80 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=56.9
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD 93 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~ 93 (213)
...++=.|.|..-+..++....+.++.+.+-...+.+-.||..++++++..++|-.+||++=.. -.+..+..|--
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDl 79 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDL 79 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeeccc
Confidence 3456667888999999999999999877654326888899999999999999999999965332 23444555533
No 297
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.40 E-value=0.048 Score=39.76 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=32.8
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL 187 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~ 187 (213)
++++.+|++++++++..++ ..++||+ .+|-||+.+|-.
T Consensus 70 v~~akVDiD~~~~LA~~fg-V~siPTL-l~FkdGk~v~~i 107 (132)
T PRK11509 70 WQVAIADLEQSEAIGDRFG-VFRFPAT-LVFTGGNYRGVL 107 (132)
T ss_pred eEEEEEECCCCHHHHHHcC-CccCCEE-EEEECCEEEEEE
Confidence 5789999999999988888 7889999 799999977644
No 298
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.17 E-value=0.25 Score=33.17 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246 20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA 92 (213)
Q Consensus 20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~ 92 (213)
.++=.|.|..-+.+++....+.++.+.+-...+.+--||..++++++..++|-++||++=... .+..+..|-
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGd 75 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGD 75 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeecc
Confidence 344567788888999988899998776543268888999999999999999999999653322 334444453
No 299
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.04 E-value=0.13 Score=38.51 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=39.0
Q ss_pred CCeEEEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcE-EEEEEeCCC---chhHHHhCCC
Q psy15246 18 DKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQV-VFARCIAED---LPKLSLNYKV 71 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v-~~~~vd~~~---~~~l~~~~~I 71 (213)
+..+++.|.+.||+.|... .+.|.+..+++...++ .++.|..+. +.+.++++++
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3444555558999999998 9999999888874455 477777664 4456677776
No 300
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.03 E-value=0.21 Score=37.10 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=38.6
Q ss_pred EEEEEcC------CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCC----ccccEEEEEeCCCCc
Q psy15246 22 VVHFYAD------WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKV----SAVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~a~------wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I----~~~Pti~~~~~g~~~ 86 (213)
+|.|+++ +|++|++.+..|+.+ +|.+-.+|++.+++. .+..+- ..+|.+. -+|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEE
Confidence 4556666 999999999988875 477788888876544 344444 5778764 456533
No 301
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=93.68 E-value=0.08 Score=34.53 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=25.7
Q ss_pred heeccCC-CCCCCC------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246 135 LKIYSNW-PTYPQV------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL 183 (213)
Q Consensus 135 v~~~apW-P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~ 183 (213)
|.||++| |.+..+ .++..++++..++ ..+| +..++|.+.+||+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~~-~v~~vPti~i~G~~ 59 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILEA-GVTATPGVAVDGEL 59 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHHc-CCCcCCEEEECCEE
Confidence 5678888 333322 3444555553222 2223 67889999999953
No 302
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=93.64 E-value=0.024 Score=41.83 Aligned_cols=53 Identities=9% Similarity=0.248 Sum_probs=31.0
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCC--HHHHHHHHhhcCCCcccceE-eCCeEe
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQD--QEVREGLKIYSNWPTYPQVY-VNTELI 184 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~--~~~~~~l~~~~~~pt~p~i~-i~g~~~ 184 (213)
....+|.||++| |.+.++ +.|..+|++.+ .++...+. ..++||+ .+| -+|+.+
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~-V~~iPt~-v~~~~~G~~v 90 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR-VDGIPHF-VFLDREGNEE 90 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcC-CCCCCEE-EEECCCCCEE
Confidence 445788999999 444333 56777887754 34443333 4566766 333 257643
No 303
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.53 E-value=0.084 Score=35.67 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG 185 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g 185 (213)
+++..+|+++.++..+++. ...+|.+++||+.++
T Consensus 44 i~~~~vd~~~~~e~a~~~~----V~~vPt~vidG~~~~ 77 (89)
T cd03026 44 IEHEMIDGALFQDEVEERG----IMSVPAIFLNGELFG 77 (89)
T ss_pred ceEEEEEhHhCHHHHHHcC----CccCCEEEECCEEEE
Confidence 7888999888876665444 446778889998766
No 304
>KOG1731|consensus
Probab=93.46 E-value=0.011 Score=52.43 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=49.7
Q ss_pred ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCC--HHHHHHHHhhcCCCc
Q psy15246 115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQD--QEVREGLKIYSNWPT 173 (213)
Q Consensus 115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~--~~~~~~l~~~~~~pt 173 (213)
+..+..++|. .+-++..-++|.||+.| |+|.++ +.++.|||... ..+|.+.. ++++||
T Consensus 41 ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~-V~~~Pt 119 (606)
T KOG1731|consen 41 IIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFS-VSGYPT 119 (606)
T ss_pred eEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcC-CCCCce
Confidence 4556667776 33333345899999999 887766 78899999874 55676665 566776
Q ss_pred c---cceEeC---CeEeehHH
Q psy15246 174 Y---PQVYVN---TELIGGLD 188 (213)
Q Consensus 174 ~---p~i~i~---g~~~gg~d 188 (213)
+ |.-+-+ |+.+.|..
T Consensus 120 lryf~~~~~~~~~G~~~~~~~ 140 (606)
T KOG1731|consen 120 LRYFPPDSQNKTDGSDVSGPV 140 (606)
T ss_pred eeecCCccccCcCCCcccCCc
Confidence 5 333444 78888843
No 305
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.34 E-value=0.29 Score=31.59 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=42.0
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe--CCCCcccccCCCchhHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK--NLKPVDRVEGADPESLDK 99 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~--~g~~~~~~~g~~~~~l~~ 99 (213)
+..|+.+.|+.|++.+-.+.+..-.+ .+..+|.....++ +.-+...+|++..=. +|..+ ..+..|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y-----~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l-----~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY-----EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL-----VDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce-----EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE-----EcHHHHHH
Confidence 34678899999999997777653322 2333333222333 335567899886432 12211 13346777
Q ss_pred HHHHHh
Q psy15246 100 KLQNQA 105 (213)
Q Consensus 100 ~i~~~~ 105 (213)
++++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777764
No 306
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.09 E-value=1.7 Score=30.29 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=57.6
Q ss_pred ceEEeCCchhh-hhhcCC-CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246 2 SVVQISEELDV-EKYGKD-KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 2 ~v~~l~~~~~~-~~~~~~-~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~ 79 (213)
++.++++.... ..+... ..++|-|+..--+ .....|.++|..+++ .+.|+... +.++..++++. .|.+++
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~~~~~~~~~~~-~~~vvl 72 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---DSEIFKSLKVS-PGQLVV 72 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---hHHHHHhcCCC-CCceEE
Confidence 45677774333 334555 6777767666433 456688899999976 78886544 35777888876 467777
Q ss_pred EeCCCCc-------ccccCC--Cchh-HHHHHHH
Q psy15246 80 LKNLKPV-------DRVEGA--DPES-LDKKLQN 103 (213)
Q Consensus 80 ~~~g~~~-------~~~~g~--~~~~-l~~~i~~ 103 (213)
|+.-... ..+.|. ...+ |.+||++
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 7433211 112333 3334 8888865
No 307
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.85 E-value=0.27 Score=31.22 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=30.5
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
.++.++|++|++.+-.+....-.+ ....++........+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~-----~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV-----EQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe-----EEEECCCCchHHHHHhcCCCccCEEE
Confidence 477899999999888777653322 23344443333333444456788874
No 308
>PHA02125 thioredoxin-like protein
Probab=92.71 E-value=0.048 Score=35.45 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=24.9
Q ss_pred heeccCC--------CCCCCC-CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 135 LKIYSNW--------PTYPQV-VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 135 v~~~apW--------P~~~~~-v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
+.|++|| |.+.++ ..+..+|+..++++...++ ...+|++. +|+.+
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~----v~~~PT~~-~g~~~ 56 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHH----IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcC----CceeCeEE-CCEEE
Confidence 5688888 333322 4456666666666655443 34555544 77643
No 309
>KOG0908|consensus
Probab=92.63 E-value=0.042 Score=44.04 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=39.4
Q ss_pred hhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 133 EGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 133 ~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
.+|+|+|.| |.|..+ .-|.+||+++-.....+.. .+-.||| ..|.||+.|
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~g-V~amPTF-iff~ng~ki 87 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNG-VNAMPTF-IFFRNGVKI 87 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcC-cccCceE-EEEecCeEe
Confidence 678999999 888887 6689999988655655555 6678999 789999754
No 310
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.62 E-value=0.036 Score=43.15 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=39.4
Q ss_pred ccccCCCccc-ccchh--hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246 115 ITHVPYDTFD-ILQDQ--EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQV 177 (213)
Q Consensus 115 ~~~~~~~~f~-~l~~~--~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i 177 (213)
+..++...|. .+... ....+|.||++| |.+.++ ++|..+|+... ...+ ...+.||+ .+
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~-~i~~lPTl-li 158 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNY-PDKNLPTI-LV 158 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhC-CCCCCCEE-EE
Confidence 3444555554 22222 234678999999 334333 67888887642 2222 24577888 78
Q ss_pred EeCCeEee
Q psy15246 178 YVNTELIG 185 (213)
Q Consensus 178 ~i~g~~~g 185 (213)
|.+|+.++
T Consensus 159 yk~G~~v~ 166 (192)
T cd02988 159 YRNGDIVK 166 (192)
T ss_pred EECCEEEE
Confidence 89998554
No 311
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.46 E-value=0.88 Score=29.41 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=39.8
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLD 98 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~ 98 (213)
..++.++|+.|.+.+-.+++.. +.+-.+++... .++.+...-..+|+++.-.+|.. -..+..|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHH
Confidence 4567789999999888777753 32333444332 34444445578998753222321 23444666
Q ss_pred HHHHH
Q psy15246 99 KKLQN 103 (213)
Q Consensus 99 ~~i~~ 103 (213)
+++.+
T Consensus 71 ~yL~~ 75 (77)
T cd03041 71 KYLFK 75 (77)
T ss_pred HHHHH
Confidence 66654
No 312
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.45 E-value=0.47 Score=30.12 Aligned_cols=51 Identities=8% Similarity=0.013 Sum_probs=35.0
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEE
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~ 78 (213)
+.|+.+||+.|.+.+-.+++..-. +.+..+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~-----~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT-----VELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC-----cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 357889999999988777765333 3445555443 34566666777899985
No 313
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.35 E-value=0.28 Score=34.61 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59 (213)
Q Consensus 19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~ 59 (213)
+.+++.|..|.|+-|+.....+.++..+|. +.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~-----ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD-----ILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc-----EEEEEe
Confidence 567899999999999999999988777666 666664
No 314
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=92.13 E-value=0.11 Score=34.66 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=45.4
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
|-+..-+.+.+....++.+.+.+-+..+.+-.||..++++++..++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 555666777888888999888755447999999999999999999999999975
No 315
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.08 E-value=0.051 Score=39.05 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=32.8
Q ss_pred hhheeccCC--------CCCCCC-----CCceEEeccCCH--------HHHHHHHhh------cCCCcccceEeCCeEee
Q psy15246 133 EGLKIYSNW--------PTYPQV-----VPYDTFDILQDQ--------EVREGLKIY------SNWPTYPQVYVNTELIG 185 (213)
Q Consensus 133 ~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~--------~~~~~l~~~------~~~pt~p~i~i~g~~~g 185 (213)
.+|.|+++| |.+.++ +++.++|++.+. ++.+-..++ .+.||+ .+|.+|+.++
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~-v~~k~Gk~v~ 104 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF-VHITDGKQVS 104 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE-EEEeCCeEEE
Confidence 577888999 333333 678999998643 222222222 236777 5778897655
Q ss_pred hH
Q psy15246 186 GL 187 (213)
Q Consensus 186 g~ 187 (213)
..
T Consensus 105 ~~ 106 (122)
T TIGR01295 105 VR 106 (122)
T ss_pred EE
Confidence 43
No 316
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=92.05 E-value=0.05 Score=37.48 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=26.8
Q ss_pred hhhhheeccCC--------CCC---CCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246 131 VREGLKIYSNW--------PTY---PQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV 179 (213)
Q Consensus 131 ~~~~v~~~apW--------P~~---~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i 179 (213)
...+|.||++| |.+ +++ +.+..+|+++++.....+.+.-+..++|++++
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 34678899999 333 112 45677888775333233333334455555554
No 317
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=91.63 E-value=0.037 Score=37.12 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=28.6
Q ss_pred hhhheeccCC--------CCCC---------CCCCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246 132 REGLKIYSNW--------PTYP---------QVVPYDTFDILQDQEVREGLKIYSNWPTY 174 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~---------~~v~~~~~d~~~~~~~~~~l~~~~~~pt~ 174 (213)
.++|.||++| |.+. ..+.|+.+|+..+..+++.+. ..+.||+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-i~~~Pt~ 75 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYG-VRGYPTI 75 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCC-CCCCCEE
Confidence 5788888988 2221 226778899998888877665 4555655
No 318
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.20 E-value=0.23 Score=34.44 Aligned_cols=32 Identities=3% Similarity=-0.059 Sum_probs=23.9
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~ 61 (213)
..|+.++|+.|++....+++. ++.+-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEeecc
Confidence 468999999999998877773 45555666544
No 319
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=90.99 E-value=0.32 Score=38.91 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=47.1
Q ss_pred ceEEeCCch---hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246 2 SVVQISEEL---DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61 (213)
Q Consensus 2 ~v~~l~~~~---~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~ 61 (213)
+|++++... ..+..+.++|.||.|.+-.||+-..-...++++++++.+ .+.|..|-+.+
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~E 144 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEE 144 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhHhh
Confidence 467776644 233358899999999999999999999999999999996 56677776654
No 320
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=90.88 E-value=1.5 Score=28.04 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHH
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~ 103 (213)
++.++|+.|++.+-.++...- .+.+..++..+ ..++.+...-..+|++. .+|..+. .+..|.++|++
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i-----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~ 69 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI-----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEE 69 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE-----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC-----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHH
Confidence 678999999998877766532 24455666554 45677777788999996 5565332 44578888877
Q ss_pred Hh
Q psy15246 104 QA 105 (213)
Q Consensus 104 ~~ 105 (213)
..
T Consensus 70 ~~ 71 (75)
T PF13417_consen 70 RY 71 (75)
T ss_dssp HS
T ss_pred Hc
Confidence 64
No 321
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=90.54 E-value=0.06 Score=38.54 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=34.6
Q ss_pred hhhhheecc-------CC--------CCCCCC-------CCceEEeccCC-------HHHHHHHHhhc-CCCcccceEeC
Q psy15246 131 VREGLKIYS-------NW--------PTYPQV-------VPYDTFDILQD-------QEVREGLKIYS-NWPTYPQVYVN 180 (213)
Q Consensus 131 ~~~~v~~~a-------pW--------P~~~~~-------v~~~~~d~~~~-------~~~~~~l~~~~-~~pt~p~i~i~ 180 (213)
...+|.||| +| |.++++ +.|..+|+... .+++...+ +. +.||+ .+|-.
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-I~~~iPT~-~~~~~ 99 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-LTTGVPTL-LRWKT 99 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC-cccCCCEE-EEEcC
Confidence 347889999 99 444333 67888998763 35554444 44 66777 45555
Q ss_pred CeEeehHH
Q psy15246 181 TELIGGLD 188 (213)
Q Consensus 181 g~~~gg~d 188 (213)
|+.+-|.+
T Consensus 100 ~~~l~~~~ 107 (119)
T cd02952 100 PQRLVEDE 107 (119)
T ss_pred Cceecchh
Confidence 55555544
No 322
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.87 E-value=1.4 Score=27.72 Aligned_cols=52 Identities=8% Similarity=0.116 Sum_probs=34.5
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----CchhHHHhCCCccccEEEE
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----DLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----~~~~l~~~~~I~~~Pti~~ 79 (213)
..|+.++|+.|++.+-.+....-.+. ...++.. ..+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~-----~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVP-----LVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCce-----EEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778999999999988777643333 3444432 2345666666778999864
No 323
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=88.77 E-value=1 Score=27.45 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=33.1
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch--hHHHhCCCccccEEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP--KLSLNYKVSAVPTFVI 79 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~--~l~~~~~I~~~Pti~~ 79 (213)
.|+.++|+.|.+.+..++...-. +....++..... ++.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57889999999988877776333 334444443322 2455567778998754
No 324
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.01 E-value=0.89 Score=33.01 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=25.2
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP 63 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~ 63 (213)
+..|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCCh
Confidence 4568899999999988777663 4556666665543
No 325
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.47 E-value=0.78 Score=32.23 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.6
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
..|+.++|+.|++....+++. ++.|-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCC
Confidence 468899999999988877773 456666666543
No 326
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.39 E-value=1 Score=31.94 Aligned_cols=34 Identities=6% Similarity=0.034 Sum_probs=25.6
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP 63 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~ 63 (213)
..|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCCh
Confidence 358899999999998877772 4666677766543
No 327
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.39 E-value=1 Score=31.37 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=23.7
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
..|+.|+|+.|++....+++. ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 468899999999988877763 355555565443
No 328
>KOG2507|consensus
Probab=85.89 E-value=5.8 Score=34.49 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=62.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhHH-HHHHH-HHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe-CCCCccccc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMN-TLFDE-MSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK-NLKPVDRVE 90 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~-~~~~~-l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~ 90 (213)
...+.++|.|-+-......+|. -.|.. .....-...+..++|+... ...++.-|-+..+|++.++. .|.++....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4567777778887778888777 34433 3222221146666676543 45677788899999998885 899999999
Q ss_pred CCCch-hHHHHHHHHh
Q psy15246 91 GADPE-SLDKKLQNQA 105 (213)
Q Consensus 91 g~~~~-~l~~~i~~~~ 105 (213)
|.... +|...|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 98775 6777777653
No 329
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=85.71 E-value=1.6 Score=26.57 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~ 192 (213)
++|...++........++++.++..++|.+..+|+.+++...+.+
T Consensus 24 i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 24 LPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHH
Confidence 566666665432221256667888999999999999998876654
No 330
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=85.60 E-value=2 Score=26.97 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=33.0
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEE
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~ 78 (213)
..|+.++|+.|++.+-.+++..-.+ ....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~-----~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV-----EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc-----EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4578899999999888776654333 333455443 23555555667899774
No 331
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.94 E-value=2.4 Score=26.75 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEE
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~ 78 (213)
..|+.++|+.|++.+-.+++..-.+. ...+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e-----~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELN-----LKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCE-----EEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35889999999988877777544333 44455322 35666666667899985
No 332
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.77 E-value=2.4 Score=31.09 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc----cccEEEEEeCCCCcccccCCC
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS----AVPTFVILKNLKPVDRVEGAD 93 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~----~~Pti~~~~~g~~~~~~~g~~ 93 (213)
...-++.|++|.|+=|......++. . ++.+-.+..+.-..+-++++|. +-=|.+ -+|+ +..|..
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~--Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy---~vEGHV 91 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----N--GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGY---YVEGHV 91 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----C--CcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCE---EEeccC
Confidence 4456788999999999988777763 2 5667777777777788888875 222332 3564 345766
Q ss_pred ch-hHHHHHHHH
Q psy15246 94 PE-SLDKKLQNQ 104 (213)
Q Consensus 94 ~~-~l~~~i~~~ 104 (213)
+. +|..++.+.
T Consensus 92 Pa~aI~~ll~~~ 103 (149)
T COG3019 92 PAEAIARLLAEK 103 (149)
T ss_pred CHHHHHHHHhCC
Confidence 66 577766554
No 333
>KOG0913|consensus
Probab=84.58 E-value=0.27 Score=39.15 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=35.5
Q ss_pred hhheeccCC-CCC-------CCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceE--eCCe---EeehHH
Q psy15246 133 EGLKIYSNW-PTY-------PQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY--VNTE---LIGGLD 188 (213)
Q Consensus 133 ~~v~~~apW-P~~-------~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~--i~g~---~~gg~d 188 (213)
|++.|++|| |++ .+. +..+++|++.++-+.-.+- ..-.|+|| .+|+ +.|-.|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~----vtaLptIYHvkDGeFrrysgaRd 114 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFL----VTALPTIYHVKDGEFRRYSGARD 114 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeE----EEecceEEEeeccccccccCccc
Confidence 899999999 444 333 8889999999876643322 24457777 6675 455555
No 334
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.57 E-value=1.3 Score=33.73 Aligned_cols=34 Identities=6% Similarity=0.136 Sum_probs=25.7
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEE
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFA 55 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~ 55 (213)
|..|+..-||.|-...+.+.++.+.+++-.+.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~ 35 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR 35 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 6778889999999999999888888843234443
No 335
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=84.00 E-value=4 Score=33.10 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=38.8
Q ss_pred hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCC-CccccEEEEEe
Q psy15246 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK-VSAVPTFVILK 81 (213)
Q Consensus 15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~-I~~~Pti~~~~ 81 (213)
...+|+.++...+.|||.|-..+=.+-.+-..|. ++.+.....+. .+ --.+||++|..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG--n~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG--NFSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC--CeeeEEeecCc-------ccCCCCCCeEEEec
Confidence 4678999999999999999987766666666666 44333222111 22 24788887764
No 336
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=83.22 E-value=3 Score=31.83 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=25.3
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v 57 (213)
+|..|.|+.|-.+.|.|.++..+++. .+.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEE
Confidence 58999999999999999999999997 5554444
No 337
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=82.94 E-value=7.7 Score=30.44 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=50.5
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------CchhHHHhCCCccccEEEEEeCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------DLPKLSLNYKVSAVPTFVILKNL 83 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~I~~~Pti~~~~~g 83 (213)
+=.|.+..|+.|-.....+.+++.. + +|......+| .....+++++.+++-|=-++-||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-P--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-T--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-C--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECC
Confidence 4579999999999999999999998 3 4444444433 12345667777766555566688
Q ss_pred CCcccccCCCchhHHHHHHHHhc
Q psy15246 84 KPVDRVEGADPESLDKKLQNQAS 106 (213)
Q Consensus 84 ~~~~~~~g~~~~~l~~~i~~~~~ 106 (213)
+. ...|.+..++...|.+...
T Consensus 79 ~~--~~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 79 RE--HRVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp TE--EEETT-HHHHHHHHHHHHH
T ss_pred ee--eeeccCHHHHHHHHHHhhc
Confidence 74 3567887788888888764
No 338
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=82.87 E-value=3 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.0
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 467889999999988877773 455556665543
No 339
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.44 E-value=2.1 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=23.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~ 61 (213)
+..|+.++|+.|++....+++. ++.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeC
Confidence 4578899999999988777663 34455555543
No 340
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=81.90 E-value=0.35 Score=34.34 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=30.6
Q ss_pred hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHH-HHHHHHhhcC--CCcccceEe--CCeEee
Q psy15246 130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQE-VREGLKIYSN--WPTYPQVYV--NTELIG 185 (213)
Q Consensus 130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~-~~~~l~~~~~--~pt~p~i~i--~g~~~g 185 (213)
+...+|.|||+| |.+.+. .+|..+|++.+++ ..+.+. ..+ .||+ +|+ +|+.++
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~~g~~vPt~--~f~~~~Gk~~~ 91 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFS-PDGGYIPRI--LFLDPSGDVHP 91 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcc-cCCCccceE--EEECCCCCCch
Confidence 345788999999 444332 4678888887643 223333 333 5666 333 566544
No 341
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=81.75 E-value=25 Score=28.59 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred cCCCeEEEEEEcCC------CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh----CCCcc
Q psy15246 16 GKDKTAVVHFYADW------SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN----YKVSA 73 (213)
Q Consensus 16 ~~~~~~vV~F~a~w------C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~----~~I~~ 73 (213)
+-++++-|.+|.+- -..=+.+...+++++..-++ ++.+-.+|.+.+++.+++ +||..
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g-~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPG-KIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCC-ceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 44556766666554 34444455555555555554 799999999877776665 88877
No 342
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.56 E-value=5.5 Score=26.42 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=34.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-hhHHHhCCCccccEEEE
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-PKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-~~l~~~~~I~~~Pti~~ 79 (213)
+..|+.+.|+.|++.+-.++...-. +.+..++.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~-----~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP-----HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC-----CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4456788899999988777665333 33455554433 34556566778999863
No 343
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.42 E-value=2.8 Score=27.27 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=36.9
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------------ch--hHHHhCCCccccEEEEEeCCCCc
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------------LP--KLSLNYKVSAVPTFVILKNLKPV 86 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------------~~--~l~~~~~I~~~Pti~~~~~g~~~ 86 (213)
+.|+|.-||.|..+...++++.-.| -.|++.+ .+ +=++..|--++|.++. .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6799999999999888888764333 3344332 11 2345677788998764 555543
No 344
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=81.29 E-value=2.7 Score=30.58 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CchhHHHhCCCccccEEEEEeCCC
Q psy15246 61 DLPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 61 ~~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
-+|.+.++|+|+.+|++++.+++.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCC
Confidence 369999999999999999998774
No 345
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=80.88 E-value=4.5 Score=28.52 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246 35 HMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82 (213)
Q Consensus 35 ~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~ 82 (213)
.+.++...+.+..... .. .+..-+|.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555555444321 11 23334699999999999999999887
No 346
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.61 E-value=3 Score=33.25 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=29.2
Q ss_pred hHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
..+++.||+++|||++ +|+ ....|..+. .+.+.|++.++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 4678999999999998 333 224576666 58888888875
No 347
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=22 Score=26.67 Aligned_cols=44 Identities=11% Similarity=-0.048 Sum_probs=32.5
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
-.++.++|.=.|+-|+.-.++. .++.|.+.|++.++.+...=|.
T Consensus 23 ~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEecccc
Confidence 4688999999999999877654 6777888887655666655443
No 348
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=79.69 E-value=0.41 Score=32.54 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=30.4
Q ss_pred hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhc--CCCcccceEeC
Q psy15246 132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYS--NWPTYPQVYVN 180 (213)
Q Consensus 132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~--~~pt~p~i~i~ 180 (213)
..++.|+++| |.+.++ +.|+.+|+.+.+++.+.+. .. +.|++ .++-+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~-i~~~~~P~~-~~~~~ 77 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFG-LKEEDLPVI-AIINL 77 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcC-CChhhCCEE-EEEec
Confidence 3566777887 222222 7889999998877777665 44 56766 34444
No 349
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=8 Score=33.21 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE- 95 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~- 95 (213)
.+..-+=.|++-.|..|-..-..+.-++-..+ ++.-..||....++-...-+|.++||+ |-||+... .|+..-
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~fg--~GRmtle 188 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEFG--QGRMTLE 188 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEecchhhHhHHHhccceecceE--EEcchhhc--ccceeHH
Confidence 46667888999999999999888888777666 799999998877777788899999997 45776543 344433
Q ss_pred hHHHHHHH
Q psy15246 96 SLDKKLQN 103 (213)
Q Consensus 96 ~l~~~i~~ 103 (213)
+|...|..
T Consensus 189 eilaki~~ 196 (520)
T COG3634 189 EILAKIDT 196 (520)
T ss_pred HHHHHhcC
Confidence 45555543
No 350
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=78.80 E-value=10 Score=26.55 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------chhHHHhCCCccccEEEEEeCCCCccc
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------LPKLSLNYKVSAVPTFVILKNLKPVDR 88 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~~~l~~~~~I~~~Pti~~~~~g~~~~~ 88 (213)
++++++|.=.|+-|+.-. .-..+++|.++|.+.++.++..=|.. +.++..-..-+.-|++-+|....
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ki~---- 94 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEKID---- 94 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-BB----
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEEEE----
Confidence 578888888899999999 56689999999985467776655542 22333322222335555654332
Q ss_pred ccCCCchhHHHHH
Q psy15246 89 VEGADPESLDKKL 101 (213)
Q Consensus 89 ~~g~~~~~l~~~i 101 (213)
..|..+..|-+++
T Consensus 95 VnG~~ahPly~~L 107 (108)
T PF00255_consen 95 VNGPDAHPLYKYL 107 (108)
T ss_dssp SSSTTB-HHHHHH
T ss_pred ecCCCCcHHHHHh
Confidence 4455555555554
No 351
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=6.2 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCHHHHhHHHHHHHHHHHcC
Q psy15246 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSK 48 (213)
Q Consensus 19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~ 48 (213)
+..++.|....||+|++..+.+.+......
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 788999999999999988888888555555
No 352
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.56 E-value=3.6 Score=32.04 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred hhHHHhCCCccccEEEEEeCCCCcccccC--C-CchhHHHHHHHHh
Q psy15246 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEG--A-DPESLDKKLQNQA 105 (213)
Q Consensus 63 ~~l~~~~~I~~~Pti~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~ 105 (213)
..++++.++.++||+++-+||+...--.| + +.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 45788999999999999999986544445 2 2245777666654
No 353
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=76.67 E-value=8 Score=29.38 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCC-HHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCC---chhHHHhC
Q psy15246 17 KDKTAVVHFYADWS-DECKHMNTLFDEMSKQSKY--SQVVFARCIAED---LPKLSLNY 69 (213)
Q Consensus 17 ~~~~~vV~F~a~wC-~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~---~~~l~~~~ 69 (213)
.+++++|.|.-..| ..|-.+...+.++.+.+.. .++.++.|.+|- .++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 68999999999888 5788777777776665442 257777666653 34555554
No 354
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=76.64 E-value=4.5 Score=28.58 Aligned_cols=11 Identities=9% Similarity=-0.405 Sum_probs=8.7
Q ss_pred hhhhheeccCC
Q psy15246 131 VREGLKIYSNW 141 (213)
Q Consensus 131 ~~~~v~~~apW 141 (213)
...+|.|+++|
T Consensus 15 k~vlv~f~a~w 25 (125)
T cd02951 15 KPLLLLFSQPG 25 (125)
T ss_pred CcEEEEEeCCC
Confidence 34778899999
No 355
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.57 E-value=14 Score=23.65 Aligned_cols=47 Identities=6% Similarity=-0.117 Sum_probs=32.5
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEe--CCeEeehHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV--NTELIGGLDIIKELQ 194 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i--~g~~~gg~d~~~~~~ 194 (213)
++|..+++..+......+.+.++.-++|.+-. +|..+.+.+.+.+..
T Consensus 25 i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 25 LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 77888888765544556777888889998865 356667666665533
No 356
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=76.39 E-value=4.6 Score=32.32 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=38.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC---CcEEEEEEeCC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY---SQVVFARCIAE 60 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~---~~v~~~~vd~~ 60 (213)
..+..+||-+-..+|..|......++.|..++.. .+|.|+.||--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 5678899999999999999999999999876653 37999999954
No 357
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=76.10 E-value=5.1 Score=29.10 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=23.9
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCC
Confidence 3467889999999988766662 455666665543
No 358
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=74.79 E-value=1 Score=32.46 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=21.4
Q ss_pred ceEEeccCCHHHHHHHH-------hhcCCCcccceEeCCeEe
Q psy15246 150 YDTFDILQDQEVREGLK-------IYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 150 ~~~~d~~~~~~~~~~l~-------~~~~~pt~p~i~i~g~~~ 184 (213)
+..+|.++.+++.+.+. +..|+||+--+--+|+.+
T Consensus 53 ~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 53 PIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred EEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 45677777777655432 245788883333557776
No 359
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=74.04 E-value=32 Score=25.18 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCch------------------hHHHhCCCccc
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLP------------------KLSLNYKVSAV 74 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~------------------~l~~~~~I~~~ 74 (213)
...|+.+|+..+|.-..+..+.... +.+.+-+++ ++.+-.-|++... ..++.++...+
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 4578999999998876555444332 344444454 6777777866532 24567889999
Q ss_pred cEEEEEeCC----CCcccccCCCch-hHHHHHHHHh
Q psy15246 75 PTFVILKNL----KPVDRVEGADPE-SLDKKLQNQA 105 (213)
Q Consensus 75 Pti~~~~~g----~~~~~~~g~~~~-~l~~~i~~~~ 105 (213)
|.+.++-.. ..+.+..|.... ++...+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 999888422 356677787665 6777776654
No 360
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=72.78 E-value=24 Score=27.66 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=40.7
Q ss_pred CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcC-C--CcE--EEEEEeCCC-chhHHHhCCC-ccccEEE
Q psy15246 17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSK-Y--SQV--VFARCIAED-LPKLSLNYKV-SAVPTFV 78 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~-~--~~v--~~~~vd~~~-~~~l~~~~~I-~~~Pti~ 78 (213)
.+++++|.|.=+.|| -|-.+...+..+.+++. . .++ .++.||-+. .++..++|.. ...|.+.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 789999999877776 58888877777776665 2 344 455555432 4667777776 4444333
No 361
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=72.56 E-value=8.8 Score=26.28 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCc
Q psy15246 38 TLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPV 86 (213)
Q Consensus 38 ~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~ 86 (213)
....+++++++-..+.... +.++.++|++.++|+.++++ +|+.+
T Consensus 65 ~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~P~~~vid~~G~v~ 109 (114)
T cd02967 65 AEHQRFLKKHGLEAFPYVL-----SAELGMAYQVSKLPYAVLLDEAGVIA 109 (114)
T ss_pred HHHHHHHHHhCCCCCcEEe-----cHHHHhhcCCCCcCeEEEECCCCeEE
Confidence 3455555555521223221 24689999999999999997 66543
No 362
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.44 E-value=2.9 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.2
Q ss_pred chhHHHhCCCccccEEEEEe
Q psy15246 62 LPKLSLNYKVSAVPTFVILK 81 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~~~~ 81 (213)
+..++++++|+++||++++.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHHcCCCCCCEEEEEe
Confidence 45689999999999999998
No 363
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.25 E-value=14 Score=27.87 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=21.0
Q ss_pred cCCCcccceEeCCe-EeehHHHHHHHHH
Q psy15246 169 SNWPTYPQVYVNTE-LIGGLDIIKELQV 195 (213)
Q Consensus 169 ~~~pt~p~i~i~g~-~~gg~d~~~~~~~ 195 (213)
.|...+|.+.|||+ .+-|.|.+..+.+
T Consensus 163 ~gv~GvP~~vv~g~~~~~G~~~~~~l~~ 190 (193)
T PF01323_consen 163 LGVFGVPTFVVNGKYRFFGADRLDELED 190 (193)
T ss_dssp TTCSSSSEEEETTTEEEESCSSHHHHHH
T ss_pred cCCcccCEEEECCEEEEECCCCHHHHHH
Confidence 46788899999999 8888877766543
No 364
>KOG2792|consensus
Probab=70.78 E-value=16 Score=29.72 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCC-Cc----EEEEEEeCC--------------------------Cchh
Q psy15246 17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKY-SQ----VVFARCIAE--------------------------DLPK 64 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~-~~----v~~~~vd~~--------------------------~~~~ 64 (213)
.++.++++|.=+.||. |-.....+..+.++... .+ =.|+.||-+ +...
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4788999999999874 65544444333333321 01 257778743 2345
Q ss_pred HHHhCCCcccc-------------EEEEE---eCCCCcccccC-CCchhHHHHHHHHhc
Q psy15246 65 LSLNYKVSAVP-------------TFVIL---KNLKPVDRVEG-ADPESLDKKLQNQAS 106 (213)
Q Consensus 65 l~~~~~I~~~P-------------ti~~~---~~g~~~~~~~g-~~~~~l~~~i~~~~~ 106 (213)
+|++|.|.--+ ++++| .+|+.+.+++- .+.+++.+.|.+++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 78888776433 34433 26777776553 333478888777653
No 365
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=69.74 E-value=20 Score=22.29 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=29.8
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeC-CeEeehHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN-TELIGGLDIIKELQ 194 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~-g~~~gg~d~~~~~~ 194 (213)
+.|..+.+...... ..+ +.++..++|.+..+ |..+++...+.+-.
T Consensus 24 l~~~~~~~~~~~~~-~~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 24 IPVEQIILQNDDEA-TPI-RMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred CCeEEEECCCCchH-HHH-HhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 66766666544222 122 35667789999987 88999888776643
No 366
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=68.88 E-value=8.8 Score=26.62 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEEE-eCCC
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVIL-KNLK 84 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~~-~~g~ 84 (213)
||-.+|+-|......+..... .. .+.|+.+......++.+.+++. ..-+.+.+ .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GG--RLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CC--CEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788999999999888877622 22 5777766445555566677765 44555543 5665
No 367
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.78 E-value=16 Score=22.64 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=32.3
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----CchhHHHhCCCccccEEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----DLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----~~~~l~~~~~I~~~Pti~~ 79 (213)
.|+.+.|+.|.+.+-.++...-.+ ....+|.. ...++.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIPY-----EWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc-----EEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 577899999999887777654333 34445532 2234444445568899863
No 368
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.55 E-value=40 Score=23.70 Aligned_cols=89 Identities=12% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHH----HhCCCc-cccEEEEEe--CCCCcc-
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLS----LNYKVS-AVPTFVILK--NLKPVD- 87 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~----~~~~I~-~~Pti~~~~--~g~~~~- 87 (213)
-++..++.|-.+-.+.-.+|.+.+.++|+++.. .++.++.||-+.-+-+. +.|+|. .-|.|=++. +...+.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 357889999999999999999999999999874 47999999999887665 345655 348777664 222222
Q ss_pred cccC----CCchhHHHHHHHHh
Q psy15246 88 RVEG----ADPESLDKKLQNQA 105 (213)
Q Consensus 88 ~~~g----~~~~~l~~~i~~~~ 105 (213)
...+ .+.++|..||+..+
T Consensus 99 ~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccccCcHHHHHHHHHhhC
Confidence 1212 23347999988753
No 369
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.02 E-value=8.7 Score=29.16 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=24.8
Q ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHcC
Q psy15246 22 VVHFYADWSDECKHMNTLFDEMSKQSK 48 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l~~~~~ 48 (213)
|..|+-+.||.|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568999999999999999999999984
No 370
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=64.73 E-value=30 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=60.1
Q ss_pred CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEE--Ee----------------CCCchhHHHhCCCccccEEEEE
Q psy15246 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CI----------------AEDLPKLSLNYKVSAVPTFVIL 80 (213)
Q Consensus 19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~--vd----------------~~~~~~l~~~~~I~~~Pti~~~ 80 (213)
.-|+=.|.+..|..|-.....+.+++++-. |.-.. || .+......+.|+-++++|--.+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~---vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPG---VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCC---EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 345567889999999999988888877533 33333 33 1234467888999999998888
Q ss_pred eCCCCcccccCCCchhHHHHHHHHh
Q psy15246 81 KNLKPVDRVEGADPESLDKKLQNQA 105 (213)
Q Consensus 81 ~~g~~~~~~~g~~~~~l~~~i~~~~ 105 (213)
-+|+.. ..|.+..+|.+.|...-
T Consensus 119 vnGr~~--~~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 119 VNGRVH--ANGADPGAIEDAIAAMA 141 (261)
T ss_pred eechhh--hcCCCHHHHHHHHHHhh
Confidence 899743 46888888888887764
No 371
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=64.27 E-value=4.4 Score=36.67 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=32.3
Q ss_pred hhhheeccCCC-CC---CCC-------------CCceEEeccCC-HHHHHHHHhhc--CCCcc
Q psy15246 132 REGLKIYSNWP-TY---PQV-------------VPYDTFDILQD-QEVREGLKIYS--NWPTY 174 (213)
Q Consensus 132 ~~~v~~~apWP-~~---~~~-------------v~~~~~d~~~~-~~~~~~l~~~~--~~pt~ 174 (213)
..+|+|||+|. ++ ++. +..-..|++.+ ++.++.|++++ |-|++
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~ 538 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTY 538 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEE
Confidence 68899999992 22 222 66788999985 88999999887 45776
No 372
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=64.23 E-value=4.1 Score=37.16 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=28.0
Q ss_pred hhhheeccCC--------CC-C--CCC------CCceEEeccCC-HHHHHHHHh--hcCCCcccceE-eCCeE
Q psy15246 132 REGLKIYSNW--------PT-Y--PQV------VPYDTFDILQD-QEVREGLKI--YSNWPTYPQVY-VNTEL 183 (213)
Q Consensus 132 ~~~v~~~apW--------P~-~--~~~------v~~~~~d~~~~-~~~~~~l~~--~~~~pt~p~i~-i~g~~ 183 (213)
..+|.||++| |. + +++ +.+..+|++++ ++..+-+++ ..+.||+ .+| -+|+.
T Consensus 476 ~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~-~~~~~~G~~ 547 (571)
T PRK00293 476 PVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTI-LFFDAQGQE 547 (571)
T ss_pred cEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEE-EEECCCCCC
Confidence 4688999999 21 2 111 45678899875 333333333 3456666 333 24654
No 373
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=62.79 E-value=8.5 Score=28.14 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=18.5
Q ss_pred hcCCCcccceEeCCeEeehHHHHHHH
Q psy15246 168 YSNWPTYPQVYVNTELIGGLDIIKEL 193 (213)
Q Consensus 168 ~~~~pt~p~i~i~g~~~gg~d~~~~~ 193 (213)
..+....|+++|||+.+.|.-.+.+|
T Consensus 131 ~~~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 131 QLGITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp HHT-SSSSEEEETTCEEETTTSHHHH
T ss_pred HcCCccccEEEECCEEeCCCCCHHHH
Confidence 45778999999999998864444443
No 374
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.78 E-value=8.7 Score=29.39 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=23.5
Q ss_pred chhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHH
Q psy15246 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKL 101 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i 101 (213)
+...+.+.||.++||+++ +|+. ...|..+. .+.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 345678899999999987 5542 24566554 455443
No 375
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=60.33 E-value=1.1e+02 Score=26.26 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=55.2
Q ss_pred ceEEeCCchhhhhh--cCCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246 2 SVVQISEELDVEKY--GKDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 2 ~v~~l~~~~~~~~~--~~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~ 78 (213)
||..|++....+.. ....+-+|=|+.+- ..+ ...|+++|..+.+ -|.|..+ -++.+|++++.. .=.+-
T Consensus 147 PVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p-~IkFfAt---fd~~vAk~L~lK-~nev~ 217 (383)
T PF01216_consen 147 PVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQP-YIKFFAT---FDKKVAKKLGLK-LNEVD 217 (383)
T ss_dssp SEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHHHHHHHCTT-TSEEEEE----SHHHHHHHT-S-TT-EE
T ss_pred chhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHHHHHHHhhcC-ceeEEEE---ecchhhhhcCcc-cccee
Confidence 46667774444332 23346666555554 443 3367889999986 6777764 368899999997 66777
Q ss_pred EEeC--CCCcccccCCCch-hHHHHHHHHhc
Q psy15246 79 ILKN--LKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 79 ~~~~--g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
+|+. .+++..-..+.++ +|.+||+++-.
T Consensus 218 fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 218 FYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp EE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred eeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 8863 3444433334444 79999999853
No 376
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=59.83 E-value=26 Score=22.16 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=35.3
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----CchhHHHhCCCccccEEEEEeCCC
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----DLPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----~~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
..|+.+.|+.|++.+-.+++..-. +.+..+|.. ..+++.+--.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~-----~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR-----CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC-----CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 457888999998887666665433 334555542 234466656667899985 4554
No 377
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=57.47 E-value=42 Score=22.63 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=41.5
Q ss_pred cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246 27 ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105 (213)
Q Consensus 27 a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 105 (213)
...|+.|++.+-.+++. +-.+.+..+|....+ .+.+..-...+|++. .+|..+ ..+..|.+.|++..
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eYLde~~ 86 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEFLEETL 86 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHHHHHHc
Confidence 46899999988777664 213455667766544 444445567899664 344322 24446777777764
No 378
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=56.41 E-value=16 Score=25.65 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=17.5
Q ss_pred EEEEEcCCCHHHHhHHHHHHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l 43 (213)
+..|..|.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999988777663
No 379
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=56.26 E-value=9.3 Score=28.98 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.5
Q ss_pred chhHHHhCCCccccEEEEEeCCC
Q psy15246 62 LPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
+...+.+.||.++||+++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 34567889999999999997664
No 380
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=56.18 E-value=23 Score=22.42 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~ 193 (213)
+.|..++++.... +..+.+.+..-++|.+-.+|..+.+...+.+.
T Consensus 22 i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~y 66 (75)
T PF13417_consen 22 IPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEY 66 (75)
T ss_dssp EEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHH
T ss_pred CeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHH
Confidence 4555556554322 45666678888999999999988877666543
No 381
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.33 E-value=14 Score=29.36 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred chhHHHhCCCccccEEEEEeCCCCcccccCCCc-hhHHHHHHHH
Q psy15246 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-ESLDKKLQNQ 104 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~-~~l~~~i~~~ 104 (213)
+..+++++||.++||+++- |+ .+.|..+ .+|.+.|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHh
Confidence 4567889999999998763 33 3556555 4787777665
No 382
>KOG3029|consensus
Probab=55.04 E-value=9.8 Score=31.42 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=36.4
Q ss_pred hhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe-EeehHHHHHHH
Q psy15246 130 EVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE-LIGGLDIIKEL 193 (213)
Q Consensus 130 ~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~-~~gg~d~~~~~ 193 (213)
.+|.||++.+ +.|.-|.+ |+-.+++++ +|.|..+|.+.+.|+ .+-..-|+..|
T Consensus 104 KVrAFLDyhg--------isY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 104 KVRAFLDYHG--------ISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred HHHHHHhhcC--------CceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHHHHHHH
Confidence 5667777654 56655544 367788888 889999999999886 44444455444
No 383
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=53.51 E-value=53 Score=20.44 Aligned_cols=50 Identities=10% Similarity=-0.046 Sum_probs=29.9
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-hhHHHhCCC-ccccEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-PKLSLNYKV-SAVPTFV 78 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-~~l~~~~~I-~~~Pti~ 78 (213)
.++.+.|+.|.+.+-.++...-.+. ...+|.... ++..+..-. ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~~-----~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPYE-----YVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCCE-----EEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 4667899999998877777543333 334444332 333333332 5899885
No 384
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=53.43 E-value=26 Score=27.52 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=22.8
Q ss_pred chhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD 93 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~ 93 (213)
+|.+.++|+|+.+|+|++... ...+...|..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNI 181 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNL 181 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecc
Confidence 688999999999999999743 3334444533
No 385
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=73 Score=24.83 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=48.6
Q ss_pred CeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHHhC
Q psy15246 19 KTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSLNY 69 (213)
Q Consensus 19 ~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~~~ 69 (213)
+.+++.|| ++.-+-|-.-...+.+...+++..++.++.+.+| ...++++.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 56666666 5666666666666777666666444555555443 345678888
Q ss_pred CCcccc------EEEEEe-CCCCc----cc-ccCCCchhHHHHHHHH
Q psy15246 70 KVSAVP------TFVILK-NLKPV----DR-VEGADPESLDKKLQNQ 104 (213)
Q Consensus 70 ~I~~~P------ti~~~~-~g~~~----~~-~~g~~~~~l~~~i~~~ 104 (213)
|+..-. .+.+++ +|... .. -.|++..++.+.|+.+
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 876422 223333 45321 11 2266666666666654
No 386
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=50.93 E-value=53 Score=20.43 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=32.1
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----CchhHHHhCCCccccEEE
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----DLPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----~~~~l~~~~~I~~~Pti~ 78 (213)
-.|+.+.|+.|++.+-.++...-.+ ....++.. ..+++.+......+|++.
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVDY-----ELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCCc-----EEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 4455777999999887777654333 34444432 234556666677899874
No 387
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.56 E-value=47 Score=22.43 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=34.0
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC--------CCccccEEEEEeCCC
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY--------KVSAVPTFVILKNLK 84 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~--------~I~~~Pti~~~~~g~ 84 (213)
..|.+.+.-.++....=+++...+...+|.|-.+|++.+++..+.. +-..+|-+ |.+++
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI--Fi~~~ 69 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQI--FNGDE 69 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE--EECCE
Confidence 3444444445655555555555554446889999998776654432 23566665 34554
No 388
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=50.12 E-value=23 Score=24.79 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=17.0
Q ss_pred EEEEcCCCHHHHhHHHHHHH
Q psy15246 23 VHFYADWSDECKHMNTLFDE 42 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~ 42 (213)
..|+.+.|..|++....+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998877776
No 389
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.34 E-value=26 Score=24.42 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=16.9
Q ss_pred EEEEcCCCHHHHhHHHHHHHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l 43 (213)
..|+.+.|..|++....+++.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 468899999999987766663
No 390
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=47.88 E-value=45 Score=22.53 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCceEEeccCCH---HHHHHHHhhcC-CCcccceEeCCeEeeh
Q psy15246 148 VPYDTFDILQDQ---EVREGLKIYSN-WPTYPQVYVNTELIGG 186 (213)
Q Consensus 148 v~~~~~d~~~~~---~~~~~l~~~~~-~pt~p~i~i~g~~~gg 186 (213)
..|.++|+...+ +-++-..++.. -=-+|.+.++|+.||-
T Consensus 38 f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 38 FEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred eEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467788887642 23333334433 2346999999999984
No 391
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=47.79 E-value=19 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.2
Q ss_pred cCCCcccceEeCCeEeehHHHHHHHH
Q psy15246 169 SNWPTYPQVYVNTELIGGLDIIKELQ 194 (213)
Q Consensus 169 ~~~pt~p~i~i~g~~~gg~d~~~~~~ 194 (213)
.+....|+++|||+.+-|.+....|.
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHHH
Confidence 36778999999999999988766654
No 392
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.82 E-value=71 Score=19.71 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=31.3
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~ 78 (213)
.|+.+.|+.|.+.+-.++...... .+....+|... .+++.+......+|++.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i---~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 55 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD---DVELVLVNPWSDDESLLAVNPLGKIPALV 55 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC---CcEEEEcCcccCChHHHHhCCCCCCCEEE
Confidence 467889999998777666521111 24445555332 34555555667889775
No 393
>PRK10387 glutaredoxin 2; Provisional
Probab=44.24 E-value=72 Score=24.34 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=38.5
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHH
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~ 103 (213)
.++.+.|++|.+.+-.++...-.+ ....++...+....+......+|+++. .+|..+. .+..|..+|.+
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y-----~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l~-----eS~aI~~yL~~ 71 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV-----ELIVLANDDEATPIRMIGQKQVPILQK-DDGSYMP-----ESLDIVHYIDE 71 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe-----EEEEcCCCchhhHHHhcCCcccceEEe-cCCeEec-----CHHHHHHHHHH
Confidence 356788999999887776654333 333344333222223333457888743 3443221 33467777766
Q ss_pred H
Q psy15246 104 Q 104 (213)
Q Consensus 104 ~ 104 (213)
.
T Consensus 72 ~ 72 (210)
T PRK10387 72 L 72 (210)
T ss_pred h
Confidence 5
No 394
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.34 E-value=37 Score=24.07 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=18.3
Q ss_pred EEEEEcCCCHHHHhHHHHHHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l 43 (213)
+-.|+.|.|..|+.....+++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999998887774
No 395
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=39.95 E-value=26 Score=25.43 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred eEEeCC-chhhhhhc-CCCeEEEEEEcCCCHHHH--hHHHHHHHHHHH-cCCCcEEEEEEeCCCchh---HHHhCC---C
Q psy15246 3 VVQISE-ELDVEKYG-KDKTAVVHFYADWSDECK--HMNTLFDEMSKQ-SKYSQVVFARCIAEDLPK---LSLNYK---V 71 (213)
Q Consensus 3 v~~l~~-~~~~~~~~-~~~~~vV~F~a~wC~~C~--~~~~~~~~l~~~-~~~~~v~~~~vd~~~~~~---l~~~~~---I 71 (213)
..+|+. +.-.+.++ ..++.+|. -.+-|+ |- ..+|........ .+. =.++.|=+..+.+ -++.|= -
T Consensus 18 f~eL~T~e~Vd~~~~~~~GTtlVv-VNSVCG-CAag~ARPa~~~al~~~kkP--D~lvTVFAGqDkEAt~~aR~yf~~~p 93 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEGTTLVV-VNSVCG-CAAGNARPAAAMALQNDKKP--DHLVTVFAGQDKEATAKAREYFEPYP 93 (136)
T ss_dssp -EE--SHHHHHHHHHH--SEEEEE-EE-SSH-HHHHTHHHHHHHHHHHSS----SEEEEEETTTSHHHHHHHHHTSTTS-
T ss_pred ccccCCHHHHHHHHhCCCCcEEEE-Eecccc-ccccccCHHHHHHHhCCCCC--CceEEeccCCCHHHHHHHHHhcCCCC
Confidence 345555 44455565 66666664 467787 55 345554443332 222 1344444444333 334442 2
Q ss_pred ccccEEEEEeCCCCcc-----cccCCCchhHHHHHHHHh
Q psy15246 72 SAVPTFVILKNLKPVD-----RVEGADPESLDKKLQNQA 105 (213)
Q Consensus 72 ~~~Pti~~~~~g~~~~-----~~~g~~~~~l~~~i~~~~ 105 (213)
-+-|++.+|++|+.+. ...|...+.|.+-|....
T Consensus 94 PSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 94 PSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp --SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 2568999999997653 345777776666665543
No 396
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=39.54 E-value=50 Score=23.72 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=31.1
Q ss_pred cEEEEEEeCCCchh----------HHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246 51 QVVFARCIAEDLPK----------LSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106 (213)
Q Consensus 51 ~v~~~~vd~~~~~~----------l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (213)
++.+.+-|...++. +.++-|...+|-+++ +|+.+..-.-++.++|.+|+.-...
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence 79999999887653 445668999998754 7876653222334478888865543
No 397
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=39.20 E-value=20 Score=24.66 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=39.8
Q ss_pred EEEcCCCHHHHhHHH-------HHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcc-ccEEEEEeCCCCcccccCCCch
Q psy15246 24 HFYADWSDECKHMNT-------LFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA-VPTFVILKNLKPVDRVEGADPE 95 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~-------~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~-~Pti~~~~~g~~~~~~~g~~~~ 95 (213)
.|....|+.|..+.. ..+.+...+.| +..+ +| -+...+|+..+|.. +|-...+ ...|..++
T Consensus 17 qf~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G--~i~i-~d-P~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp~ 85 (98)
T cd07973 17 QFERDGCPNCEGYLDMKGNHERVYDCTSPNFEG--IIAL-MD-PEKSWVARWQRIDKFVPGIYAI-------SVSGRLPE 85 (98)
T ss_pred cccCCCCCCCcchhccCCCccccccccCCCcce--EEEE-EC-CchhHHHHHhCCCCCCCCeEEE-------EecCcCCH
Confidence 388899999963321 22334555553 2222 33 34578999999873 3444333 34566666
Q ss_pred hHHHHHHH
Q psy15246 96 SLDKKLQN 103 (213)
Q Consensus 96 ~l~~~i~~ 103 (213)
++.+.++.
T Consensus 86 ~i~~~l~~ 93 (98)
T cd07973 86 DIVEELES 93 (98)
T ss_pred HHHHHHHH
Confidence 66666554
No 398
>KOG1364|consensus
Probab=38.33 E-value=60 Score=27.65 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=43.0
Q ss_pred cEEEEEEeCCCchhHHHhCCCccccEEEEEe--CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246 51 QVVFARCIAEDLPKLSLNYKVSAVPTFVILK--NLKPVDRVEGADPE-SLDKKLQNQAS 106 (213)
Q Consensus 51 ~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~--~g~~~~~~~g~~~~-~l~~~i~~~~~ 106 (213)
.+..+..|..+...+..-|.+..+|.+.+++ .|+.+.+..|.-.. ++..-+++++.
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 3556667777888999999999999888886 68888888776554 56666666654
No 399
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=37.22 E-value=93 Score=19.15 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=27.1
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV 195 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~ 195 (213)
++|..+++.... .+..-++|.+..+|+.+.+.+.+.+..+
T Consensus 31 i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 31 IPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 666666665421 3445689999999999988877655443
No 400
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=37.06 E-value=62 Score=22.27 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=20.2
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
|+.+.|..|++....+++. ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-------CCCeEeehhhhC
Confidence 6789999999988888762 466666776553
No 401
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=36.87 E-value=47 Score=21.75 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=19.4
Q ss_pred cccEEEEEe-CCCCccc--ccCCCchhHHHHHHHHh
Q psy15246 73 AVPTFVILK-NLKPVDR--VEGADPESLDKKLQNQA 105 (213)
Q Consensus 73 ~~Pti~~~~-~g~~~~~--~~g~~~~~l~~~i~~~~ 105 (213)
.-|++++++ +|+...+ ..+.+.+++.+++.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999987 6765544 44677778999988753
No 402
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=34.97 E-value=1e+02 Score=18.39 Aligned_cols=32 Identities=9% Similarity=0.001 Sum_probs=23.5
Q ss_pred EcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246 26 YADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62 (213)
Q Consensus 26 ~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~ 62 (213)
..=.|+.|.+ .+++.....+ +|.-+.+|...+
T Consensus 5 ~~m~C~~C~~---~v~~~l~~~~--GV~~v~vd~~~~ 36 (62)
T PF00403_consen 5 PGMTCEGCAK---KVEKALSKLP--GVKSVKVDLETK 36 (62)
T ss_dssp ESTTSHHHHH---HHHHHHHTST--TEEEEEEETTTT
T ss_pred CCcccHHHHH---HHHHHHhcCC--CCcEEEEECCCC
Confidence 3447999987 6677777777 688888887664
No 403
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=34.90 E-value=1.8e+02 Score=21.30 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccc--cEEEEEeCCCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAV--PTFVILKNLKP 85 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~--Pti~~~~~g~~ 85 (213)
.+++-.|.+|---|+-|-.....+.+.- ..+ .+.|+.+..+....+....++..- =++.+.++|+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~-~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGG-RIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCC-cEEEEeccCchhhhHHhhcCCChhhhheeeEecCCce
Confidence 3566778899999999999665554421 222 699999999988888888887743 35556666654
No 404
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=34.81 E-value=21 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=17.8
Q ss_pred eEeCCeEeehHHH-------HHHHHHcCCchhh
Q psy15246 177 VYVNTELIGGLDI-------IKELQVANKLIPT 202 (213)
Q Consensus 177 i~i~g~~~gg~d~-------~~~~~~~~~l~~~ 202 (213)
+|+||+.+|=+++ ++++-.+|.+...
T Consensus 1 VFlNG~~iG~~~~p~~l~~~lr~~RR~g~i~~~ 33 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVKTLRNLRRSGKISKE 33 (63)
T ss_dssp EEETTEEEEEESSHHHHHHHHHHHHHTTSS-TT
T ss_pred CEECCEEEEEEcCHHHHHHHHHHHhhccCCcce
Confidence 6899999997654 4566666766543
No 405
>KOG0868|consensus
Probab=33.96 E-value=76 Score=24.59 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=41.8
Q ss_pred ceEEeccCC-HHHHHHHHhhcCCCcccceEeCCe-EeehHHHHHHHHHcCCchhhccCCC
Q psy15246 150 YDTFDILQD-QEVREGLKIYSNWPTYPQVYVNTE-LIGGLDIIKELQVANKLIPTLDQPP 207 (213)
Q Consensus 150 ~~~~d~~~~-~~~~~~l~~~~~~pt~p~i~i~g~-~~gg~d~~~~~~~~~~l~~~~~~~~ 207 (213)
+.-+|.... .....++++.+..-++|.+-|||- ..-...++.-|.|.----.+|-.+|
T Consensus 33 y~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~ 92 (217)
T KOG0868|consen 33 YKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDP 92 (217)
T ss_pred eeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCH
Confidence 344666665 566778999999999999999995 5567777888777665555664443
No 406
>KOG1651|consensus
Probab=33.13 E-value=2.1e+02 Score=21.80 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--------CchhH----HHhCCCccccEEEEEeCCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--------DLPKL----SLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--------~~~~l----~~~~~I~~~Pti~~~~~g~ 84 (213)
.++.++|.=-|+.|+.-..--..+..|.+.|++.++.++.-=|. .+.++ +.+|+..- -+|.+.
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f----~if~Ki- 107 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEF----PIFQKI- 107 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCC----ccEeEE-
Confidence 57888888889999999866668999999987645666655443 23343 34555432 334322
Q ss_pred CcccccCCCchhHHHHHHHHh
Q psy15246 85 PVDRVEGADPESLDKKLQNQA 105 (213)
Q Consensus 85 ~~~~~~g~~~~~l~~~i~~~~ 105 (213)
...|..++-+-+++++..
T Consensus 108 ---dVNG~~~~PlykfLK~~~ 125 (171)
T KOG1651|consen 108 ---DVNGDNADPLYKFLKKVK 125 (171)
T ss_pred ---ecCCCCCchHHHHHhhcC
Confidence 134556666778877763
No 407
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=32.55 E-value=1.3e+02 Score=23.24 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=36.6
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHHH
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQ 104 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~ 104 (213)
++...||.|++.+-.+....-.+. ...++...+....+......+|++.. .+|..+. .+..|.+++.+.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~e-----~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l~-----es~~I~~yL~~~ 71 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPVE-----KHVLLNDDEETPIRMIGAKQVPILQK-DDGRAMP-----ESLDIVAYFDKL 71 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCeE-----EEECCCCcchhHHHhcCCCCcceEEe-eCCeEec-----cHHHHHHHHHHh
Confidence 456779999988877766533332 22233333223333333467887743 3443221 233566777665
No 408
>KOG3171|consensus
Probab=32.46 E-value=27 Score=27.76 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=28.7
Q ss_pred hcCCCcccceEeCCeEeehHHHHHHHHH----cCCchhhccCCC
Q psy15246 168 YSNWPTYPQVYVNTELIGGLDIIKELQV----ANKLIPTLDQPP 207 (213)
Q Consensus 168 ~~~~pt~p~i~i~g~~~gg~d~~~~~~~----~~~l~~~~~~~~ 207 (213)
.++.|++ +||-+|++||..=.+.+... .|+|.++|+.-+
T Consensus 209 ~n~lP~L-liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 209 LNVLPTL-LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred ccCCceE-EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 5678998 89999999999866665544 457777776543
No 409
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.94 E-value=72 Score=22.50 Aligned_cols=51 Identities=10% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCC--CccccEEEEEe
Q psy15246 29 WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYK--VSAVPTFVILK 81 (213)
Q Consensus 29 wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~--I~~~Pti~~~~ 81 (213)
.|++|..+.-.+...-..-. .+.+.+|+...-. ++....| =++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~--~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRE--RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhh--cccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 59999887766654333222 6778888877643 3333333 36899987754
No 410
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=30.21 E-value=1.3e+02 Score=18.68 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=32.3
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---CchhHHHhCCCccccEEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---DLPKLSLNYKVSAVPTFVI 79 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---~~~~l~~~~~I~~~Pti~~ 79 (213)
.|+.+.|+.|.+.+-.++...- .+.+..+|.. ..+++.+..-...+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL-----DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC-----ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4677888989887766665422 3445566654 2345555555678999854
No 411
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=30.20 E-value=67 Score=24.89 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=19.3
Q ss_pred hHHHhCCCccccEEEEEeC-CCCcccccCCCch
Q psy15246 64 KLSLNYKVSAVPTFVILKN-LKPVDRVEGADPE 95 (213)
Q Consensus 64 ~l~~~~~I~~~Pti~~~~~-g~~~~~~~g~~~~ 95 (213)
+-+.+.||.++||+++=.+ |. -..+-|.+.-
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl 201 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK-TEMFFGSDRF 201 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC-ccceecCCcH
Confidence 3456779999999988543 32 1234455544
No 412
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=30.07 E-value=36 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.2
Q ss_pred CcccceEeCCeEeehHH
Q psy15246 172 PTYPQVYVNTELIGGLD 188 (213)
Q Consensus 172 pt~p~i~i~g~~~gg~d 188 (213)
..--++||||.++|-+-
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 34458999999999753
No 413
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=29.91 E-value=18 Score=26.50 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=10.4
Q ss_pred CCHHHHhHHHHH
Q psy15246 29 WSDECKHMNTLF 40 (213)
Q Consensus 29 wC~~C~~~~~~~ 40 (213)
-||||+++.|.+
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 699999998865
No 414
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=29.72 E-value=18 Score=26.49 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=10.4
Q ss_pred CCHHHHhHHHHH
Q psy15246 29 WSDECKHMNTLF 40 (213)
Q Consensus 29 wC~~C~~~~~~~ 40 (213)
-||||+++.|.+
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 699999998865
No 415
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=28.82 E-value=81 Score=23.29 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred chhHHHhCCCccccEEE
Q psy15246 62 LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~ 78 (213)
..+++++++++.||.++
T Consensus 120 gddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHHhCCCcccEEe
Confidence 45789999999999875
No 416
>COG3411 Ferredoxin [Energy production and conversion]
Probab=28.70 E-value=1.1e+02 Score=19.32 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=25.7
Q ss_pred cccEEEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCC
Q psy15246 73 AVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQP 112 (213)
Q Consensus 73 ~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p 112 (213)
-=|++++|.+| +. +.+.++++..+.+++++. .|.|
T Consensus 16 ~gPvl~vYpeg--vW-Y~~V~p~~a~rIv~~hl~--~Gr~ 50 (64)
T COG3411 16 DGPVLVVYPEG--VW-YTRVDPEDARRIVQSHLL--GGRP 50 (64)
T ss_pred cCCEEEEecCC--ee-EeccCHHHHHHHHHHHHh--CCCc
Confidence 34999999999 23 456777788899999873 4444
No 417
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=28.40 E-value=1.5e+02 Score=22.27 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=36.0
Q ss_pred CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60 (213)
Q Consensus 17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~ 60 (213)
.++.+.+.++++.++-|.-+.-.++.+|+.+.+.+|.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 56778899999999999999999999999998534666666654
No 418
>PRK10853 putative reductase; Provisional
Probab=28.38 E-value=73 Score=22.51 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=17.6
Q ss_pred EEEEEcCCCHHHHhHHHHHHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l 43 (213)
+..|..+.|..|++....+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 3467789999999988877763
No 419
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=27.23 E-value=97 Score=22.21 Aligned_cols=22 Identities=0% Similarity=0.045 Sum_probs=17.8
Q ss_pred EEEEEcCCCHHHHhHHHHHHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l 43 (213)
+..|.-|.|..|++....+++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4467789999999988877764
No 420
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=26.97 E-value=1.5e+02 Score=22.86 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=42.9
Q ss_pred EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-hhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHH
Q psy15246 21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99 (213)
Q Consensus 21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~ 99 (213)
.+-.|+.+.|+.|.+..-.+++..-. +....+|.... +++.+..--..+|++. .+|..+. .+..|..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~-----~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l~-----ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVS-----VEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTLY-----ESRIIME 77 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCC-----CEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEee-----CHHHHHH
Confidence 34456668899999988777665332 34555665433 3455544456889985 3443221 2235667
Q ss_pred HHHHHh
Q psy15246 100 KLQNQA 105 (213)
Q Consensus 100 ~i~~~~ 105 (213)
+|.+..
T Consensus 78 YL~~~~ 83 (211)
T PRK09481 78 YLDERF 83 (211)
T ss_pred HHHHhC
Confidence 776653
No 421
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=26.78 E-value=39 Score=22.01 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=28.6
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~ 184 (213)
.+-..+-|.+|+++|..|.+.-.-.++| -.+||+.+
T Consensus 26 ~~tlsIPCksdpdlcmQLDgWDe~TSiP-A~ldgk~~ 61 (80)
T PF07351_consen 26 EDTLSIPCKSDPDLCMQLDGWDEHTSIP-AILDGKPS 61 (80)
T ss_pred CCeEEeecCCChhheeEecccccCCccc-eEECCcee
Confidence 3556789999999999998777778898 56777744
No 422
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=26.63 E-value=82 Score=21.97 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.5
Q ss_pred chhHHHhCCCccccEEE
Q psy15246 62 LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 62 ~~~l~~~~~I~~~Pti~ 78 (213)
..+++++++++.||.++
T Consensus 82 gddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 82 GDDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHHhCCCcccEEE
Confidence 45789999999999875
No 423
>PRK10026 arsenate reductase; Provisional
Probab=26.33 E-value=93 Score=22.88 Aligned_cols=22 Identities=0% Similarity=0.042 Sum_probs=18.0
Q ss_pred EEEEEcCCCHHHHhHHHHHHHH
Q psy15246 22 VVHFYADWSDECKHMNTLFDEM 43 (213)
Q Consensus 22 vV~F~a~wC~~C~~~~~~~~~l 43 (213)
+..|+.|.|..|++....+++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4467899999999988877764
No 424
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=1.9e+02 Score=21.74 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=48.3
Q ss_pred cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---CchhHHHhCCCccccEEEEEeCC
Q psy15246 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---DLPKLSLNYKVSAVPTFVILKNL 83 (213)
Q Consensus 16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---~~~~l~~~~~I~~~Pti~~~~~g 83 (213)
...+.++..|=+=.-+-|......|.+.+..+. +..+..|..| .....|...||..+=++--|++.
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~~ 111 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRDR 111 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhhh
Confidence 344556667778888999999999999999998 5666666665 46678888888875555555444
No 425
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=24.97 E-value=1e+02 Score=20.84 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246 152 TFDILQDQEVREGLKIYSNWPTYPQVYVNTE 182 (213)
Q Consensus 152 ~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~ 182 (213)
++=++.|.+++..+++. |.+|.||+++.
T Consensus 67 ~~VaT~D~~Lr~~lr~~---~GvPvi~l~~~ 94 (101)
T PF04900_consen 67 YIVATQDKELRRRLRKI---PGVPVIYLRRN 94 (101)
T ss_pred EEEEecCHHHHHHHhcC---CCCCEEEEECC
Confidence 56678899999988844 67778888753
No 426
>KOG0852|consensus
Probab=24.51 E-value=1.3e+02 Score=23.18 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeC--------------------------CCchhHHH
Q psy15246 17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIA--------------------------EDLPKLSL 67 (213)
Q Consensus 17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~--------------------------~~~~~l~~ 67 (213)
.++.+++.|| -++---|-.-.-.|.+.+.+++. -.|..+.+|. |.+.++|+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 5677888887 45555565444566666666653 2455566662 35667888
Q ss_pred hCCCc
Q psy15246 68 NYKVS 72 (213)
Q Consensus 68 ~~~I~ 72 (213)
.|||-
T Consensus 112 dyGvL 116 (196)
T KOG0852|consen 112 DYGVL 116 (196)
T ss_pred hcCce
Confidence 88875
No 427
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=24.42 E-value=1.2e+02 Score=18.44 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=20.8
Q ss_pred HHHHhhcCCCcccceEeCCeEeehHHHHHH
Q psy15246 163 EGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192 (213)
Q Consensus 163 ~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~ 192 (213)
..+.+.+...++|.+..+|..+.....+.+
T Consensus 41 ~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 41 PAYRALNPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred hHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 445556777899999888877766554443
No 428
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=4.8e+02 Score=22.82 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCc-ccccCCC-ch
Q psy15246 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPV-DRVEGAD-PE 95 (213)
Q Consensus 18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~-~~~~g~~-~~ 95 (213)
.+++.+.-..+....++.++..+++++.... ++.+-..+ ....-|+|.+-+.|... -++.|.. ..
T Consensus 18 ~~~i~l~asldds~~s~~~~~ll~eia~~S~--kis~~~~~-----------~~~RkpSF~i~r~g~~~gv~FAglPlGH 84 (520)
T COG3634 18 EQPIELVASLDDSEKSKEIKELLDEIASLSD--KISLEEDS-----------DLVRKPSFSINRPGEDQGVRFAGLPLGH 84 (520)
T ss_pred cCCeEEEEecCcccccHHHHHHHHHHHhhcc--ceeeeecC-----------ccccCCceeecCCCcccceEEecCcccc
Confidence 4566667777888888888888888887665 55554321 12345888888877533 3455533 34
Q ss_pred hHHHHHHHHhccCCCCC
Q psy15246 96 SLDKKLQNQASTMKNQP 112 (213)
Q Consensus 96 ~l~~~i~~~~~~~kg~p 112 (213)
++..++..++. ..|.|
T Consensus 85 EftSlVLaLlq-v~G~p 100 (520)
T COG3634 85 EFTSLVLALLQ-VGGHP 100 (520)
T ss_pred hHHHHHHHHHH-hcCCC
Confidence 67777766664 34444
No 429
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=23.48 E-value=1.2e+02 Score=17.16 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEeCCeEeeh--HHHHHHHHHcCCchh
Q psy15246 177 VYVNTELIGG--LDIIKELQVANKLIP 201 (213)
Q Consensus 177 i~i~g~~~gg--~d~~~~~~~~~~l~~ 201 (213)
+..||+..|- .+++++|.++|++..
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCCC
Confidence 4467888885 467899999998764
No 430
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=23.34 E-value=57 Score=22.62 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=13.1
Q ss_pred cccceEeCCeEeehHH
Q psy15246 173 TYPQVYVNTELIGGLD 188 (213)
Q Consensus 173 t~p~i~i~g~~~gg~d 188 (213)
.-|.+|.||++||=.+
T Consensus 81 CTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 81 CTPLVFKNGKLVGWGD 96 (102)
T ss_pred eEEEEEECCEEEEEcH
Confidence 4589999999999544
No 431
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.90 E-value=80 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.1
Q ss_pred CCchhHHHhCCCccccEEEEEeCCC
Q psy15246 60 EDLPKLSLNYKVSAVPTFVILKNLK 84 (213)
Q Consensus 60 ~~~~~l~~~~~I~~~Pti~~~~~g~ 84 (213)
+.+..+.++|+|..+|+++. .+|+
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~ 195 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGL 195 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCC
Confidence 44678999999999999975 4554
No 432
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.26 E-value=46 Score=28.52 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=39.8
Q ss_pred CCHHHHhHHHHHHHHHHH----cCC--CcEEEEEEeCCCch--hH-HHhCCCc-ccc-EEEEEeCCCCcccc-cCCCch-
Q psy15246 29 WSDECKHMNTLFDEMSKQ----SKY--SQVVFARCIAEDLP--KL-SLNYKVS-AVP-TFVILKNLKPVDRV-EGADPE- 95 (213)
Q Consensus 29 wC~~C~~~~~~~~~l~~~----~~~--~~v~~~~vd~~~~~--~l-~~~~~I~-~~P-ti~~~~~g~~~~~~-~g~~~~- 95 (213)
.||.|-+..-.+++++++ +.+ ..++++-+=|--|. +. -..|||- +-| ...+|++|+.+.+. ......
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 478887765555555444 332 36888888776432 11 1245666 444 48899999988766 443333
Q ss_pred hHHHHHHHH
Q psy15246 96 SLDKKLQNQ 104 (213)
Q Consensus 96 ~l~~~i~~~ 104 (213)
+|.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 466666554
No 433
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=21.93 E-value=1.2e+02 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246 162 REGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV 195 (213)
Q Consensus 162 ~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~ 195 (213)
......-.|...+|++.|||+.+=|.|.+..+.+
T Consensus 156 ~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~ 189 (192)
T cd03022 156 NTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEE 189 (192)
T ss_pred HHHHHHHcCCCcCCeEEECCeeecccccHHHHHH
No 434
>KOG1422|consensus
Probab=21.70 E-value=4.2e+02 Score=21.09 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=41.4
Q ss_pred CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh-CCCccccEEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246 29 WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN-YKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106 (213)
Q Consensus 29 wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~-~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (213)
.|+.|+++.-.+. .... .+.+-.||...-++-.+. ..-...|.+.+ +|+- -.+...|+++|++.+.
T Consensus 20 dcpf~qr~~m~L~---~k~~--~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~-----~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV--PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW-----VTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH---HcCC--CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce-----eccHHHHHHHHHHhcC
Confidence 6899998877776 2222 467788998877665544 34455565543 2221 1244478899988874
No 435
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=21.61 E-value=1.3e+02 Score=20.71 Aligned_cols=44 Identities=5% Similarity=0.003 Sum_probs=27.7
Q ss_pred EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH
Q psy15246 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66 (213)
Q Consensus 23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~ 66 (213)
|..|.+.+....+++..-+++..-+...+|.|-.||+..+.+..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r 46 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEAR 46 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHH
Confidence 45555666667778887777776665447999999998865543
No 436
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=21.55 E-value=1.3e+02 Score=19.09 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.7
Q ss_pred cccceEeCCeEeehHHHHHHHHH
Q psy15246 173 TYPQVYVNTELIGGLDIIKELQV 195 (213)
Q Consensus 173 t~p~i~i~g~~~gg~d~~~~~~~ 195 (213)
.+|.|..+|+.|+|.+.+.+..+
T Consensus 48 kLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 48 KLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred ccCEEEECCEEecChHHHHHHHH
Confidence 47889999999999988766543
No 437
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=21.49 E-value=65 Score=22.53 Aligned_cols=14 Identities=57% Similarity=0.940 Sum_probs=11.5
Q ss_pred cccceEeCCeEeeh
Q psy15246 173 TYPQVYVNTELIGG 186 (213)
Q Consensus 173 t~p~i~i~g~~~gg 186 (213)
.-|.++|||+.+|.
T Consensus 41 ~~~~v~vdg~~ig~ 54 (117)
T PF11008_consen 41 VKPDVYVDGELIGE 54 (117)
T ss_pred ccceEEECCEEEEE
Confidence 34689999999986
No 438
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.45 E-value=85 Score=26.72 Aligned_cols=78 Identities=8% Similarity=-0.009 Sum_probs=45.3
Q ss_pred CCHHHHhHHHHHH----HHHHHcCC--CcEEEEEEeCCCc--h-hHHHhCCCcc--ccEEEEEeCCCCcccccCCCch-h
Q psy15246 29 WSDECKHMNTLFD----EMSKQSKY--SQVVFARCIAEDL--P-KLSLNYKVSA--VPTFVILKNLKPVDRVEGADPE-S 96 (213)
Q Consensus 29 wC~~C~~~~~~~~----~l~~~~~~--~~v~~~~vd~~~~--~-~l~~~~~I~~--~Pti~~~~~g~~~~~~~g~~~~-~ 96 (213)
.||.|-+..-.+. ++.+.+.. ..+.++.+-|--| . ..-..+||.+ -|...+|.+|+.+.+..+..-. +
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 5888876544433 33333332 1244443333211 1 1223456664 5899999999988887776654 6
Q ss_pred HHHHHHHHhc
Q psy15246 97 LDKKLQNQAS 106 (213)
Q Consensus 97 l~~~i~~~~~ 106 (213)
|...++++..
T Consensus 343 l~~~i~~~~~ 352 (361)
T COG0821 343 LEALIEAYAE 352 (361)
T ss_pred HHHHHHHHHH
Confidence 8777777754
No 439
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=21.44 E-value=40 Score=21.09 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=14.3
Q ss_pred EeehHHHHHHHHHcC-Cchhhcc
Q psy15246 183 LIGGLDIIKELQVAN-KLIPTLD 204 (213)
Q Consensus 183 ~~gg~d~~~~~~~~~-~l~~~~~ 204 (213)
.|||.|-+..-...+ +|.++|+
T Consensus 21 IIGGSDLi~h~~~knseleeWl~ 43 (65)
T PF08599_consen 21 IIGGSDLIAHHAGKNSELEEWLR 43 (65)
T ss_pred eecchhhhhccccccccHHHHHH
Confidence 589999776544444 6666664
No 440
>KOG0324|consensus
Probab=21.29 E-value=90 Score=24.67 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=38.4
Q ss_pred EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccE
Q psy15246 25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPT 76 (213)
Q Consensus 25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pt 76 (213)
..++.+ .+..++..+++|+++|++....+..=||.. ..++|.+..-+.+|.
T Consensus 80 lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~ 131 (214)
T KOG0324|consen 80 LGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPS 131 (214)
T ss_pred ecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccH
Confidence 334443 467888899999999998778888889987 457888776666664
No 441
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=21.26 E-value=63 Score=20.11 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=9.4
Q ss_pred ceEeCCeEee
Q psy15246 176 QVYVNTELIG 185 (213)
Q Consensus 176 ~i~i~g~~~g 185 (213)
.+||||+++|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 6999999999
No 442
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.64 E-value=2.2e+02 Score=17.53 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=32.1
Q ss_pred EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEE
Q psy15246 24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFV 78 (213)
Q Consensus 24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~ 78 (213)
.|+.+-++.|++..-.++...-.+ ....+|... .+++.+..-...+|++.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~~-----~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIPF-----EECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCCc-----EEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 567788999998877676654333 344455432 23555656677899885
No 443
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=20.50 E-value=1.3e+02 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=17.5
Q ss_pred cCCCcccceEe-CCeEeehH---HHHHHHHH
Q psy15246 169 SNWPTYPQVYV-NTELIGGL---DIIKELQV 195 (213)
Q Consensus 169 ~~~pt~p~i~i-~g~~~gg~---d~~~~~~~ 195 (213)
.|....|.+++ ||+.+.|+ +.+.++.+
T Consensus 198 lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 198 FGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred cCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 35555666666 99999996 45555443
No 444
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=20.24 E-value=3.2e+02 Score=19.16 Aligned_cols=83 Identities=10% Similarity=-0.025 Sum_probs=49.0
Q ss_pred EEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-CCCch-----------hHHHhCCCc--cccEEEEEeCCCCc
Q psy15246 22 VVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-AEDLP-----------KLSLNYKVS--AVPTFVILKNLKPV 86 (213)
Q Consensus 22 vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-~~~~~-----------~l~~~~~I~--~~Pti~~~~~g~~~ 86 (213)
+|.|. ++.-+.=++....+.+....+...++.++.+- -.... .+.++|++. ++-.+++=++|..-
T Consensus 13 lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK 92 (118)
T PF13778_consen 13 LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVK 92 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEE
Confidence 33343 34555556666666665555554456666653 22222 788899865 44445555788766
Q ss_pred ccccCCCch-hHHHHHHHH
Q psy15246 87 DRVEGADPE-SLDKKLQNQ 104 (213)
Q Consensus 87 ~~~~g~~~~-~l~~~i~~~ 104 (213)
.++....+. +|.+.|...
T Consensus 93 ~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 93 LRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EecCCCCCHHHHHHHHhCC
Confidence 666665544 677777654
No 445
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=20.19 E-value=1.8e+02 Score=17.77 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=21.5
Q ss_pred HHHHhhcCCCcccceEeCCeEeehHHHHHHH
Q psy15246 163 EGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193 (213)
Q Consensus 163 ~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~ 193 (213)
..+.+.+...++|.+..+|+.+.....+.+-
T Consensus 40 ~~~~~~~p~~~vP~l~~~g~~l~es~aI~~y 70 (76)
T cd03046 40 PEYLAINPLGKVPVLVDGDLVLTESAAIILY 70 (76)
T ss_pred HHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3455567778899998888877766655443
No 446
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=20.18 E-value=2.2e+02 Score=17.31 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHH
Q psy15246 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192 (213)
Q Consensus 148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~ 192 (213)
++|..+.+.........+...+..-++|.+..+|..+.....+.+
T Consensus 24 i~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~ 68 (72)
T cd03039 24 VEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILR 68 (72)
T ss_pred CCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHH
Confidence 555555443321111235556777889988888876665544433
Done!