RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15246
(213 letters)
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 95.8 bits (239), Expect = 7e-26
Identities = 36/58 (62%), Positives = 48/58 (82%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
V Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV +L+GGLDI+KEL+ +L+P L
Sbjct: 45 VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 95.7 bits (238), Expect = 2e-25
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 2 SVVQIS--EELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
+V ++ + + + VVHF+A W+ +C MN + E++K + QV F +
Sbjct: 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAK--ELPQVSFVKLE 70
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV 118
AE +P++S Y++S+VPTF+ KN + +DR++GA L KK+Q AS+ PS V
Sbjct: 71 AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKV 130
Query: 119 PYDTFDILQDQ 129
D D+
Sbjct: 131 DTDPNSSSVDK 141
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 93.9 bits (234), Expect = 3e-25
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
+ + +FDI D+EVR+GLK YS+WPTYPQ+YV+ ELIGGLDIIKEL+ + +L +
Sbjct: 46 IQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPK 103
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 93.4 bits (233), Expect = 4e-25
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
V Y+TFDIL+D+EVR+GLK YSNWPTYPQ+YV EL+GGLDI+KEL+ +L+P L
Sbjct: 47 VEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 93.1 bits (232), Expect = 6e-25
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 1 MSVVQIS--EELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
+ V + + E + AVV F C + F MS KY Q VF
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSN--KYPQAVFLEV 58
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+ +SA PTF +N +D+ +GAD L++K++
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 91.9 bits (229), Expect = 2e-24
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP 207
VP++ +IL+++ +R+GLK YSNWPT+PQ+Y+ E GG DI E +L +++
Sbjct: 48 VPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAM 107
Query: 208 SS 209
S
Sbjct: 108 CS 109
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 91.2 bits (227), Expect = 4e-24
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 147 VVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
V Y +++L D E+R+G+K YSNWPT PQVY+N E +GG DI+ ++ L+ L +
Sbjct: 50 VRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 108
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 91.8 bits (228), Expect = 5e-24
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 2 SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
+V I+ E D E K + +F A W + + + E+S+ Y ++F
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSE--NYPSLMFLV 82
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMK 109
++L S ++++ A PTF L++ + VD++ GA+ L KK+ ++
Sbjct: 83 IDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLP 135
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 88.6 bits (220), Expect = 4e-23
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 3 VVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V+ + E+ E K V+ F A W C+ M +F +++K K+ VF +
Sbjct: 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK--KFPNAVFLKV 71
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
++L ++ + V A+PTF+ +K DRV GA E L K+ A+
Sbjct: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAAA 121
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 88.2 bits (219), Expect = 5e-23
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 1 MSVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
SV QI + ++ DK VV F A W K + F +S+ KYS V+F
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEV 68
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+D ++ +V ++PTF K + V GA+ E L+ +
Sbjct: 69 DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 113
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 87.4 bits (217), Expect = 2e-22
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 149 PYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
+ +++L+D E+REG+K +S WPT PQ+YVN E IGG D+I + + +L L++
Sbjct: 50 KFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 86.6 bits (215), Expect = 2e-22
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
K VV F A W CK + +F E++K K+ V F + ++L ++ + V A+PT
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAELAK--KFPNVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
F+ LK+ K VD+ GAD + L + A+
Sbjct: 83 FIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 86.6 bits (215), Expect = 2e-22
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V QI + ++ DK VV F A W CK + F +S+ KYS V+F
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDV 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+D ++ +V ++PTF K + V GA+ E L+ +
Sbjct: 60 DDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 86.2 bits (214), Expect = 4e-22
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 2 SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
+V+ +E D K ++ F A W C+ + +F E +K K+ +F +
Sbjct: 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK--KFPGAIFLK 64
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
++L ++ Y V A+PTF+ +K+ + VD V G + + K+ +
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, transport, glutathione,
thioredoxin fold; HET: GSH; 1.90A {Escherichia coli}
PDB: 1yka_A
Length = 135
Score = 86.7 bits (215), Expect = 4e-22
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
+ DILQ+ ++R L Y+NWPT+PQ++V+ EL+GG DI+ E+ +L + +
Sbjct: 65 ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 85.5 bits (212), Expect = 5e-22
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 3 VVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
V++I+++ DK V++F+ W++ CK + +F+ +S + S V F
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
A++ ++S +++SAVP F+I+ + + GADP+ L++ +
Sbjct: 62 ADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKN 109
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 84.8 bits (210), Expect = 2e-21
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 1 MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
SVV + S E +D V F A W CK + ++++ ++ V FA+ A
Sbjct: 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAY--EFPTVKFAKVDA 76
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
++ ++ +V +PTF+I ++ K + V GA+P L +KL+
Sbjct: 77 DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 119
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 83.5 bits (207), Expect = 3e-21
Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 1 MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
S+ ++ + ++ V+ FYA W CK M ++ + Y V F +C
Sbjct: 12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ--AYPDVRFVKCDV 69
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
++ P ++ +V+A+PTFV+ K+ + + ++ GA+P +L+K +++
Sbjct: 70 DESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIKD 113
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 83.6 bits (207), Expect = 6e-21
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 3 VVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V+ +E D + K ++ F A W C+ + +F E +K K+ VF +
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK--KFPGAVFLKV 73
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPS 113
++L +++ Y V A+PTF+ +K+ D+V GA + L + S
Sbjct: 74 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASAS 129
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 83.2 bits (206), Expect = 6e-21
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
VV F A W C+ + F +++K K V+F + ++L ++ ++ + A+PT
Sbjct: 37 SKTLVVVDFTASWCGPCRFIAPFFADLAK--KLPNVLFLKVDTDELKSVASDWAIQAMPT 94
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
F+ LK K +D+V GA + L + +
Sbjct: 95 FMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 81.1 bits (201), Expect = 3e-20
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 1 MSVVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
M V+ + +L+ K + VV F+A W C+++ + ++K + +V FA+
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAK--EIPEVEFAKVDV 58
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+ + + Y V+A+PTFV +K+ K VDR GA+ L + +
Sbjct: 59 DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETIT 101
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 80.8 bits (200), Expect = 4e-20
Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M + S+ +++ +V F+A+W CK + ++E SK Y+++VF + +
Sbjct: 9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSK--TYTKMVFIKVDVD 66
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
++ +++ ++++PTF + KN VD + GA+ +L + ++ A+
Sbjct: 67 EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 80.5 bits (199), Expect = 6e-20
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 1 MS-VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
MS ++++ ++ D+E K+K VV F+A W CK + LF E+S++ +F +
Sbjct: 12 MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVK 68
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+ L + + Y +SA+PTF+ +KN + V V GA ++ ++
Sbjct: 69 VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIK 114
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 79.3 bits (196), Expect = 1e-19
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M + +DK VV FYA W CK + + ++ S+ +Y Q F + +
Sbjct: 7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSE--QYPQADFYKLDVD 64
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
+L ++ +VSA+PT ++ KN K V +V GA+P ++ + + A
Sbjct: 65 ELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 109
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 78.9 bits (195), Expect = 3e-19
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 1 MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
SV I S + + G DK V+ F+A W CK + +F+++S +V F +
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDV 74
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
++ +++ + A+PTFV KN + +D V GADP L + ++
Sbjct: 75 DEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 77.1 bits (190), Expect = 2e-18
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
+++ + + ++ + V+ F A W C + F Y V
Sbjct: 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN---YYYVTLVDIDV 78
Query: 60 EDLPKLSLNYKVSAVPTFVILKN----LKPVDRVEGADPESLDKKLQNQAST 107
+ PKL+ + + A+PTF N V VEGA+ ++K Q
Sbjct: 79 DIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLE 130
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 75.1 bits (185), Expect = 6e-18
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 2 SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFA 55
SV+ I D + + K VV F A W CK + LF+ +S Y+ +V+F
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSN--DYAGKVIFL 60
Query: 56 RCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
+ + + ++ ++A+PTF + K+ D + GA + L + A+
Sbjct: 61 KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 74.2 bits (183), Expect = 1e-17
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V Q+ ++ D++ K V+ F+A W CK ++ E+S Q VV +
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDV 60
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
++ +++ Y +S++PTFV LKN V+ GA+ + L+ ++
Sbjct: 61 DECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 74.3 bits (183), Expect = 1e-17
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-IAEDLPKLSLNYKVSAVP 75
DK V+ + W K M ++++++ +Y V+F + ++ L+ + VP
Sbjct: 23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKELGIRVVP 80
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
TF ILK V V GA + L + +Q S
Sbjct: 81 TFKILKENSVVGEVTGAKYDKLLEAIQAARS 111
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 72.8 bits (179), Expect = 5e-17
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-IAEDLPKLSLNYKVSAVP 75
DK V+ + W CK M ++++++ +Y V+F + ++ L+ + VP
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKELGIRVVP 93
Query: 76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
TF ILK V V GA + L + +Q S
Sbjct: 94 TFKILKENSVVGEVTGAKYDKLLEAIQAARS 124
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 73.0 bits (179), Expect = 6e-17
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 2 SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
+ +IS +V KD V+H Y C +N +++ K+ + F + I
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLAR--KFPETKFVKAI 68
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
+ +Y + +PT + KN + + G
Sbjct: 69 VNSCIE---HYHDNCLPTIFVYKNGQIEGKFIGIIECGGIN 106
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 71.7 bits (176), Expect = 1e-16
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 2 SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
+ +IS +V +D ++H Y C +N +++ K+ + F + I
Sbjct: 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLAR--KFPETKFVKAI 61
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
+ +Y + +PT + KN + + G
Sbjct: 62 VNSCIQ---HYHDNCLPTIFVYKNGQIEAKFIGIIECGGIN 99
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 64.7 bits (158), Expect = 6e-14
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 1 MS--VVQIS---EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFA 55
MS +V + E L +V F+A W C+ + + +++ V F
Sbjct: 1 MSDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAE--ANKDVTFI 58
Query: 56 RCIAEDLPKLSLNYKVSAVPTFVILKN----LKPVDRVEGADPESLDKKLQ 102
+ + + Y VS++P +K +K +D+ GAD + ++
Sbjct: 59 KVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIE 109
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 64.3 bits (157), Expect = 6e-14
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 1 MS-VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
MS + I+ E + + A+V F+ + CK+M + D+ + QV + +
Sbjct: 1 MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGA--RAPQVAISSVDS 58
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
E P+L VPT V +++ K G
Sbjct: 59 EARPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPR 95
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 66.6 bits (162), Expect = 1e-13
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 2 SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V ++ +EK K T VVH Y D C +N+ ++ +Y V F +
Sbjct: 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAA--EYPMVKFCKI 170
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95
A + + +PT ++ K + + +
Sbjct: 171 KASNTG-AGDRFSSDVLPTLLVYKGGELLSNFISVTEQ 207
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 62.7 bits (153), Expect = 3e-13
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 148 VPYDTFDILQ---DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
Y ++ + +++ L ++ T P V++ + IGG D + E N+L+P L
Sbjct: 45 ASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
Query: 205 Q 205
Sbjct: 105 D 105
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 64.7 bits (157), Expect = 4e-13
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 15/113 (13%)
Query: 2 SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V ++ +EK K T VV+ Y D C +N+ + ++ +Y V F +
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAA--EYPMVKFCKI 157
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD--------PESLDKKLQ 102
A + + +PT ++ K + + ++ L
Sbjct: 158 RASNTG-AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLN 209
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 60.0 bits (146), Expect = 2e-12
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M+ + EEL + + ++ + C M + + + Y+ V + +
Sbjct: 2 MNTFKTIEELA-TYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLE--NYNYVEKIEILLQ 58
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLDKKLQ 102
D+ +++ Y V PT ++ N K + R E+L++ +Q
Sbjct: 59 DMQEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQ 101
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 58.7 bits (142), Expect = 2e-11
Identities = 14/96 (14%), Positives = 29/96 (30%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
V+ S D K D ++ + E + E+ ++ A E
Sbjct: 19 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ + V P ++ + K + G P +
Sbjct: 79 QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWA 114
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 56.9 bits (137), Expect = 1e-10
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
K +K V+ F D C ++ + + S + + + +S
Sbjct: 19 KSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS-KMAAIYLVDVDQTAVYTQYFDISY 77
Query: 74 VPTFVILKNLKPVDRVEGADPES 96
+P+ V N + + G+ +
Sbjct: 78 IPSTVFFFNGQHMKVDYGSPDHT 100
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 56.0 bits (135), Expect = 2e-10
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN 68
+ ++E+ K T +V F+A+WS++C+ ++ ++S + + + F + +S
Sbjct: 18 DEELER-DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTR 76
Query: 69 YKVSA------VPTFVILKNLKPVDRVEGADPES 96
YKVS +PT ++ + K R D +
Sbjct: 77 YKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKG 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 56.3 bits (136), Expect = 8e-10
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
V++ S V + +F+++ S C + + + ++ Q Q + A+ +
Sbjct: 19 QVLEQSMTTPV---------LFYFWSERSQHCLQLTPILESLAAQYN-GQFILAKLDCDA 68
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKLQNQASTMKNQ 111
++ + + A+PT + +N +PVD +G P LD L + Q
Sbjct: 69 EQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQ 123
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 53.2 bits (128), Expect = 2e-09
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
S+++ + VE K VV FY+ CK M F+E +K+ S VF R
Sbjct: 6 SSIIEFEDMTWSQQVED--SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG-SSAVFGRI 62
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQASTMK 109
P + Y V PTF + +PV G S + LQ+ ++
Sbjct: 63 NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIR 119
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 52.3 bits (126), Expect = 2e-09
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
V+ + + + AVV F+A+W C + + +E+++ Y QV F + +++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAED--YPQVGFGKLNSDEN 58
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
P ++ Y V ++PT + K+ +PVD + GA P ++ +++
Sbjct: 59 PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIK 99
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 53.3 bits (128), Expect = 3e-09
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V + E+ D +V F+A W C+ M F + QV A+
Sbjct: 46 TGKVAGIDPAILARAERD--DLPLLVDFWAPWCGPCRQMAPQFQAAAATLA-GQVRLAKI 102
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQA 105
+ P ++ +++ +P F++ + + R GA P S + KL +A
Sbjct: 103 DTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLGARA 155
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 52.1 bits (125), Expect = 3e-09
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIA 59
++ I+ ++E+ + ++ F D C M +SK+ + + +AR
Sbjct: 9 INFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEE 68
Query: 60 EDLPKLSLNYKVSAVPTFVIL-KNLKPVDRVEGADPES-LDKKLQN 103
E L+ Y + VPT V L K +G ++ ++ L +
Sbjct: 69 EKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 52.0 bits (125), Expect = 6e-09
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D V+ F+A W C+ +F E + + +V F + E P LS +++ ++PT
Sbjct: 55 DLPMVIDFWAPWCGPCRSFAPIFAETAAERA-GKVRFVKVNTEAEPALSTRFRIRSIPTI 113
Query: 78 VILKNLKPVDRVEGADPES-----LDKKLQNQAST 107
++ +N K +D + GA P++ LD++L ++
Sbjct: 114 MLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPNS 148
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 53.3 bits (128), Expect = 6e-09
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIA 59
+ +++E E +V FYA W CK + +++ +K+ + + A+ A
Sbjct: 131 VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 190
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
L+ + VS PT I + +P D + + + Q+
Sbjct: 191 TAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQS 236
Score = 52.2 bits (125), Expect = 2e-08
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIA 59
V+ +++ T ++ FYA W CK +++++ K + A+ A
Sbjct: 16 GVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS-TMKNQPSNITHV 118
L+ + VS PT ILK + VD E + K++ + P +
Sbjct: 76 TSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVL 135
Query: 119 PYDTFD 124
+ FD
Sbjct: 136 TKENFD 141
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 50.4 bits (121), Expect = 9e-09
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
MS+ ++ + Y + K +V F C+ + + +E+ + F
Sbjct: 4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE-ESFGFYYVDV 62
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQN 103
E+ L + + VP + K+ + ++ G + + L++
Sbjct: 63 EEEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLED 111
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 50.5 bits (121), Expect = 2e-08
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAED 61
V + + KY DK A+V FYADW CK + + DE++K+ Y Q+V + E
Sbjct: 23 VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE--YDGQIVIYKVDTEK 80
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQAS 106
+L+ + + ++P+ + + + +GA P++ +D+ L +
Sbjct: 81 EQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEG 130
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 50.6 bits (121), Expect = 2e-08
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
+ KY DK A+V FYADW CK + + +E+SK+ ++ + +
Sbjct: 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKE 94
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQ 104
P+L+ ++ + ++PT + GA + +DK L Q
Sbjct: 95 PELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLKQ 141
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 49.4 bits (118), Expect = 3e-08
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 17 KDKTAVVHFYADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVS 72
+DK V + W CK + D + V + E + +L Y V
Sbjct: 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVH 85
Query: 73 AVPTFVILK-NLKPVDRVEGA-DPESLDKKLQN 103
A PT + + + + V R+ GA D L KK++
Sbjct: 86 AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKL 118
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 49.4 bits (118), Expect = 5e-08
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 17 KDKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIA----EDLPKLSLNYKV 71
K K ++ YADW CK F + Q + V + L + V
Sbjct: 30 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV 89
Query: 72 SAVPTFVILK---NLKPVDRVEGA-DPESLDKKLQNQAST 107
+PT + P RV G D E+ L+++
Sbjct: 90 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 49.0 bits (117), Expect = 6e-08
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------EDLPKLSLNYKV 71
A++ Y+ C + SK+ V+F V
Sbjct: 31 QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV 90
Query: 72 SAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
PT V K + VD++ GA P S +K +
Sbjct: 91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAR 122
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 51.3 bits (122), Expect = 6e-08
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+ +V F+A WS + + + S Q+ L Y + A PT
Sbjct: 454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLY-GQLKVGTLDCTIHEGLCNMYNIQAYPT 512
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREG-- 134
V+ + E + + ++ + ++ + TF+ L Q +
Sbjct: 513 TVVFNQSSIHEYEGHHSAEQILEFIE------DLRNPSVVSLTPSTFNELVKQRKHDEVW 566
Query: 135 -LKIYSNW 141
+ YS W
Sbjct: 567 MVDFYSPW 574
Score = 47.8 bits (113), Expect = 9e-07
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
+ V+FY+ S + + E +K+ + D L V+
Sbjct: 128 AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVD-GLLRIGAVNCGDDRMLCRMKGVN 186
Query: 73 AVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
+ P+ I ++ + G ESL S +T + F +
Sbjct: 187 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHV------RSTVTELSTGNFVNAIETAF 240
Query: 132 REGLKIYSNW 141
G+ +
Sbjct: 241 AAGVGWLITF 250
Score = 43.6 bits (102), Expect = 2e-05
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 8/128 (6%)
Query: 2 SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
SVV ++ V++ D+ +V FY+ WS + + + M++ +
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT-GLINVGSVD 602
Query: 59 AEDLPKLSLNYKVSAVPTFVILKN--LKPVDRVEGADPESLDKKLQNQASTMKNQPSNIT 116
V P K L++ P
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL--GFLPQASI 660
Query: 117 HVPYDTFD 124
+ TF+
Sbjct: 661 DLTPQTFN 668
Score = 42.8 bits (100), Expect = 4e-05
Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
S+ + + + VV FYA WS ++ F+ +++ K +V + +
Sbjct: 659 SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK-GKVRAGKVDCQA 717
Query: 62 LPKLSLNYKVSAVPTFVIL-----KNLKPVDRVEGADPESLDKKLQNQASTMKNQ 111
P+ + A P+ + K +++ D +++ + + T+++Q
Sbjct: 718 YPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 772
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 4/143 (2%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAE 60
+V ++S V A V + + + + T + V +
Sbjct: 223 TVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCD 282
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPY 120
L + +A T DR + L + N+
Sbjct: 283 AQDSLCKSLDTTASTTAYFPPGATLNDREKS---SVLFLNSLDAKEIYMEIIHNLPDFEL 339
Query: 121 DTFDILQDQEVREGLKIYSNWPT 143
+ + L+D+ ++ ++
Sbjct: 340 LSANQLEDRLAHHRWLVFFHFGK 362
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 48.5 bits (116), Expect = 7e-08
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
+ +Q + V K+ V++F+A W C +T D++ K ++ +
Sbjct: 24 VPRLQQNGSNIINGVNM--KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG-KRIYLLKV 80
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ L+ + V ++PT ++LKN + R + +
Sbjct: 81 DLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 48.2 bits (115), Expect = 1e-07
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+V F+A W C+ ++ + +E+++ ++ + ++ P L+ Y V +VPT
Sbjct: 49 GAPLTLVDFFAPWCGPCRLVSPILEELARDHA-GRLKVVKVNVDEHPGLAARYGVRSVPT 107
Query: 77 FVILKNLKPVDRVEGADPES-----LDKKLQNQ 104
V+ + PV GA P L L+ +
Sbjct: 108 LVLFRRGAPVATWVGASPRRVLEERLRPYLEGR 140
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 47.3 bits (113), Expect = 1e-07
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
+ ++EE E +K +V +A+W C ++ +++++ K + VF R +
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK-GKAVFGRLNVD 62
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQ 102
+ K++ Y V +PT +I N + VD + GA E ++K L+
Sbjct: 63 ENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 47.3 bits (113), Expect = 1e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1 MSVVQISEELDVEK--YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
+ I + D + + VV F+A W CK + ++M + +VV A+
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH-GKVVMAKVD 70
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+D L++ Y+VSAVPT + +KN VD+ G E
Sbjct: 71 IDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDED 108
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 46.5 bits (111), Expect = 2e-07
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
MSV+++++E + E DK +V F+A W C+ + + +E++K+ + +V +
Sbjct: 1 MSVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE-GKVKVVKVNV 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
++ P + Y + ++PT ++ KN + VDR+ GA P+
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKE 96
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 46.2 bits (110), Expect = 3e-07
Identities = 25/108 (23%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
++++++ E G+ +V F+A+W C+ + + +E++K+ + +++ A+ ++
Sbjct: 3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE-GKLLVAKLDVDEN 61
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQA 105
PK ++ Y+V ++PT ++ K+ +PV+ + GA P+ ++K L A
Sbjct: 62 PKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 109
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 45.7 bits (109), Expect = 5e-07
Identities = 18/114 (15%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
M++V+ ++ + + + F+A W K + + +E+ ++ ++ +
Sbjct: 1 MAIVKATDQSFSAET----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG-DKLKIVKI 55
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQAS 106
++ + + Y V ++PT ++LK+ + V+ G P+ ++K L
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEHHH 109
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 45.4 bits (108), Expect = 7e-07
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 142 PTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP 201
+ V+ + + +++ L + T P +Y+N + IGG D ++EL+ +L
Sbjct: 53 RSKVLVLQLNDMK--EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEE 110
Query: 202 TLDQ 205
L+
Sbjct: 111 LLEP 114
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 44.9 bits (107), Expect = 8e-07
Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
M +++ + V + +V F+A W C+ + + DE++ + K ++ +
Sbjct: 1 MEAGAVNDDTFKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK-DKLKCVKL 57
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
++ P ++ Y + ++PT ++ K K + + GA P++
Sbjct: 58 NTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKA 96
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 44.6 bits (106), Expect = 2e-06
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
++ +V+F+A W C+ M+ L + + ++ + + P YKV VP
Sbjct: 25 EQPVLVYFWASWCGPCQLMSPLINLAANTYS-DRLKVVKLEIDPNPTTVKKYKVEGVPAL 83
Query: 78 VILKNLKPVDRVEGADPES-----LDKKLQN 103
++K + +D EG + LD L N
Sbjct: 84 RLVKGEQILDSTEGVISKDKLLSFLDTHLNN 114
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 44.7 bits (106), Expect = 2e-06
Identities = 24/111 (21%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 1 MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
+ +++++ DV +K +V F+A W CK + + +E++ + + + A+
Sbjct: 12 SATIKVTDASFATDVLS--SNKPVLVDFWATWCGPCKMVAPVLEEIATERA-TDLTVAKL 68
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQN 103
+ P+ + N++V ++PT ++ K+ +PV R+ GA ++ L + N
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 44.2 bits (105), Expect = 2e-06
Identities = 21/96 (21%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
M++V++++ D + + +V F+A CK + + +E++ + + + +
Sbjct: 3 MAIVKVTDA-DFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYE-GKADILKLDVD 60
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ P + Y+V ++PT ++ K+ +PVD+V G P+
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 96
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 44.2 bits (105), Expect = 2e-06
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A W C+ M + +E ++ +V A+ ++ P+ + + + ++PT
Sbjct: 17 DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-DKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78 VILKNLKPVDRVEGADPES-----LDKKLQ 102
++ K +PV ++ G P+ L LQ
Sbjct: 76 ILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 45.9 bits (108), Expect = 2e-06
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS---KQSKYSQVVFARCIAEDLPK 64
E + ++ F C + + + ++ +++ A + P+
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183
Query: 65 LSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKL 101
+ Y V AVP VI N + EGA PE L L
Sbjct: 184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 145 PQVVPYDTFDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
++ + D E+++ L+ + T P+V++ E IGG ++ + +L+ L
Sbjct: 39 EGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRL 98
Query: 204 DQ 205
Q
Sbjct: 99 QQ 100
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 44.2 bits (105), Expect = 3e-06
Identities = 14/70 (20%), Positives = 34/70 (48%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+ ++ FYA W C+++ ++ ++ + +V A+ + P LS + ++A+PT
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81
Query: 78 VILKNLKPVD 87
K+ +
Sbjct: 82 YHCKDGEFRR 91
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 43.9 bits (103), Expect = 3e-06
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI---AEDLP 63
+ K + ++ F C + + + + + P
Sbjct: 7 HHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPP 66
Query: 64 KLSLNYKVSAVPTFVILKNLKPVDRVEG 91
L L V+ PTFV++ R+EG
Sbjct: 67 GLELARPVTFTPTFVLMAGDVESGRLEG 94
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 43.5 bits (103), Expect = 3e-06
Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
DK +V F+A W C+ + + ++ + ++ + ++ P + Y V ++PT
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG-DKIEIVKLNIDENPGTAAKYGVMSIPTL 81
Query: 78 VILKNLKPVDRVEGADPES-----LDKKLQN 103
+ + + + GA P++ L+ + +
Sbjct: 82 NVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD 112
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 46.0 bits (108), Expect = 4e-06
Identities = 16/115 (13%), Positives = 41/115 (35%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+ F+A W CK+M + + ++ + A+ + L + + + P+
Sbjct: 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
I KN + ++ P + + +Q + + + +P + V
Sbjct: 90 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPV 144
Score = 40.2 bits (93), Expect = 3e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSK--QSKYSQVVFAR--CIAEDLPKLSLNYKVS 72
K +V +YA W CK + + E++ + S V+ A+ D+ +
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG----VVIE 430
Query: 73 AVPTFVILKNLKPVDRVE 90
PT V+ K + V
Sbjct: 431 GYPTIVLYPGGKKSESVV 448
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 43.4 bits (103), Expect = 4e-06
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFARCIA 59
+V+ ++E + + + + FYA W CK + ++E+SK+ + V A
Sbjct: 6 TVLALTEN-NFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 64
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQA 105
+ Y V PT ++ + K V G D +SL + + +QA
Sbjct: 65 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQA 111
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
++ D E+R ++ S T+PQ+++ + +GG D + L+ KL L
Sbjct: 31 AEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLL 86
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase;
1.00A {Acetobacter aceti}
Length = 107
Score = 43.0 bits (102), Expect = 4e-06
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+V F+A+W CK + E+ K+ +V A+ +D P+ Y+V ++PT
Sbjct: 20 SGLVLVDFWAEWCGPCKMIGPALGEIGKEFA-GKVTVAKVNIDDNPETPNAYQVRSIPTL 78
Query: 78 VILKNLKPVDRVEGADPES 96
+++++ K +D+ GA P+S
Sbjct: 79 MLVRDGKVIDKKVGALPKS 97
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 42.1 bits (100), Expect = 5e-06
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
V + I + RE + S T PQ++++ + IGG D + L L P L
Sbjct: 26 VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL 81
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 43.0 bits (102), Expect = 6e-06
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
V+ D D V+E L +N T P ++VN +GG D + + L L
Sbjct: 44 CNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
Query: 205 QPPSSDLEN 213
+ + D EN
Sbjct: 102 EDLAYDAEN 110
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 42.8 bits (101), Expect = 8e-06
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A+W K + + DE++ + + ++ A+ + P + Y + +PT
Sbjct: 40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 98
Query: 78 VILKNLKPVDRVEGADPES 96
++ KN + GA +
Sbjct: 99 LLFKNGEVAATKVGALSKG 117
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea}
SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 42.2 bits (100), Expect = 9e-06
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+ +V F+A W CK + + DE++K+ ++ + ++ P ++ Y + ++PT
Sbjct: 18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 78 VILKNLKPVDRVEGADPES 96
+ KN + + + GA P+S
Sbjct: 77 LFFKNGERKESIIGAVPKS 95
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 43.5 bits (102), Expect = 1e-05
Identities = 23/188 (12%), Positives = 56/188 (29%), Gaps = 28/188 (14%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ----VVFARCIAEDLPKLSLNYKVS 72
+ + + A + C+ L E + + + + + Y V
Sbjct: 21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVD 80
Query: 73 AVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
VPT VI + R G + + + + T ++LQ ++
Sbjct: 81 RVPTIVIEGDKDYGIRYIGLPAGLEFTTLIN----GIFHVSQRKPQLSEKTLELLQVVDI 136
Query: 132 REGLKIY-SNWPTY-PQVVPY-------------DTFDILQDQEVREGLKIYSNWPTYPQ 176
+ ++ + Y P D ++Q++ E ++ P+
Sbjct: 137 PIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVG----VPK 192
Query: 177 VYVNTELI 184
+ +N +
Sbjct: 193 IVINKGVA 200
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 41.3 bits (97), Expect = 1e-05
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
+ Y DI QD +R+ ++ + P T PQ+ G ++ E + L L
Sbjct: 33 IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 44.1 bits (103), Expect = 2e-05
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKV 71
+ G +V F+A W K + ++ + + K V A+ Y V
Sbjct: 15 ISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK-GIVPLAKVDCTANTNTCNKYGV 73
Query: 72 SAVPTFVILKNLKPVDRVEG 91
S PT I ++ + +G
Sbjct: 74 SGYPTLKIFRDGEEAGAYDG 93
Score = 41.8 bits (97), Expect = 9e-05
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFAR--CIAEDLPKLSLNYKVSA 73
++K ++ FYA W CK++ + E+ ++ +V A+ A D+P Y+V
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPS---PYEVRG 425
Query: 74 VPTFVILKNLKPVDRVE 90
PT K ++ +
Sbjct: 426 FPTIYFSPANKKLNPKK 442
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 41.5 bits (98), Expect = 2e-05
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A+W CK + + DE++ + + ++ A+ + P + Y + +PT
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 78 VILKNLKPVDRVEGADPES 96
++ KN + GA +
Sbjct: 79 LLFKNGEVAATKVGALSKG 97
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 41.2 bits (97), Expect = 3e-05
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIAEDLPKLSLNYKVSAV 74
T ++ FYA W CK +++++ + A+ A L+ + VS
Sbjct: 33 DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY 92
Query: 75 PTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVP 119
PT ILK + VD E + K++ + P +T P
Sbjct: 93 PTIKILKKGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVTSGP 137
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 41.2 bits (97), Expect = 3e-05
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
+ + ++ + + + VV FYA W C++ F+ +++ K +V +
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK-GKVRAGKVDC 61
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKK 100
+ P+ + A P+ + + + + S D K
Sbjct: 62 QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAK 102
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 40.8 bits (95), Expect = 7e-05
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 18 DKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIAEDLPKLS-LNYKVSAVP 75
+V + W CK + + V E+ PK + +P
Sbjct: 46 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIP 105
Query: 76 TFVIL-KNLKPVDRVEGADPESLDK 99
+ L + K + + K
Sbjct: 106 RILFLDPSGKVHPEIINENGNPSYK 130
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 42.0 bits (98), Expect = 7e-05
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 138 YSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVAN 197
+ V+ + + +++ L + T P +Y+N + IGG D ++EL+
Sbjct: 285 LKVPRSKVLVLQLNDMK--EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETG 342
Query: 198 KLIPTLDQ 205
+L L+
Sbjct: 343 ELEELLEP 350
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 41.4 bits (97), Expect = 8e-05
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
D +V F+A+W CK + + DE++ + + ++ A+ + P + Y + +PT
Sbjct: 30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 88
Query: 78 VILKNLKPVDRVEGADPES-LDKKLQNQASTMKNQ 111
++ KN + GA + L + L + +
Sbjct: 89 LLFKNGEVAATKVGALSKGQLKEFLDANLAGSAME 123
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 41.5 bits (97), Expect = 9e-05
Identities = 8/97 (8%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 17 KDKTAVVHFYADWSDECKHMNTL------FDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
K + + ++ D+ + ++ + V F +E ++
Sbjct: 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG 88
Query: 71 VSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
++ + + K + ++ ++L + L +
Sbjct: 89 LTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLED 125
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 39.6 bits (92), Expect = 1e-04
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 148 VPYDTFDILQDQEVREGL--------KIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
+ ++ DI +E R+ + K P PQ++ G D E + +N +
Sbjct: 39 IEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYDSFFESKESNTV 98
Query: 200 IPTL--DQPPSS 209
L PSS
Sbjct: 99 FSFLGLKSGPSS 110
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 39.7 bits (93), Expect = 1e-04
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 135 LKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194
+ + + V+ D E+++ L+ S T P VY+N + IGG ++ L+
Sbjct: 58 FQELNVPKSKALVLELDEMS--NGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK 115
Query: 195 VANKLIPTL 203
KL L
Sbjct: 116 KNGKLAEIL 124
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 41.5 bits (96), Expect = 1e-04
Identities = 17/135 (12%), Positives = 35/135 (25%), Gaps = 7/135 (5%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-------YSQVVFARCIAEDLPKLSLN 68
+V FY D C+ + F + + K A L
Sbjct: 40 APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRK 99
Query: 69 YKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQD 128
Y ++ VP E SL+ + ++ + + ++ D
Sbjct: 100 YDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKHMVVDD 159
Query: 129 QEVREGLKIYSNWPT 143
+ ++ T
Sbjct: 160 SLKERCIDMHFKLYT 174
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 39.3 bits (92), Expect = 1e-04
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY---SQVVFARCIAEDLPKLSLNYKVSA 73
+ +V FYA W CK++ + + + K +V A A L+ Y +
Sbjct: 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG 83
Query: 74 VPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVP 119
PT I + + +G + + + S P + P
Sbjct: 84 FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGP 130
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 39.3 bits (92), Expect = 2e-04
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 17 KDKTAVVHFYADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVS 72
+ +V+F+++ C+ M L D + ++ V A + +L+ Y+V
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77
Query: 73 AVPTFVIL----KNLKPVDRVEGA-DPESLDKKLQ 102
PTFV L + V R+ G+ K+L+
Sbjct: 78 GTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELR 112
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 148 VPYDTFDILQDQEVR-EGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
V + + I D E R + + PQ++++ + IGG D I L A KL P L
Sbjct: 41 VEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 41.1 bits (95), Expect = 2e-04
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Query: 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFAR--CIAEDLPKLSLNYK 70
G V F+A W + E++ K + A C E + +
Sbjct: 27 LGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFN 86
Query: 71 VSAVPTFVILKN-----LKPVDRVEGADPESLD----KKLQNQASTMKNQPSNITHVPYD 121
++ PT + GA+ ++L L++ T + +
Sbjct: 87 IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLN 146
Query: 122 TFDILQDQE 130
D +
Sbjct: 147 DIDGFFTRN 155
Score = 30.3 bits (67), Expect = 0.51
Identities = 18/175 (10%), Positives = 43/175 (24%), Gaps = 11/175 (6%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
++D + + E++ V R + L
Sbjct: 145 LNDIDGFFTRNKADYLALVFEREDSYLGR------EVTLDLSQYHAVAVRRVLNTESDLV 198
Query: 67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDIL 126
+ V+ P+ +L V RV S ++ P P T +
Sbjct: 199 NKFGVTDFPSCYLLLRNGSVSRVPVLVESR-----SFYTSYLRGLPGLTRDAPPTTATPV 253
Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT 181
++ + +++ + EV + + + +V
Sbjct: 254 TADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFVAV 308
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K + F + C + +E++ + V + P+ ++ Y + AVPT V
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVMENPQKAMEYGIMAVPTIV 61
Query: 79 ILKNLKPVDRVEGADPES-----LDKKL 101
I +++ + GA + + K+L
Sbjct: 62 INGDVEFI----GAPTKEALVEAIKKRL 85
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 39.3 bits (92), Expect = 2e-04
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
+VV D + + ++ L + T P+++VN IGG L KL+P +
Sbjct: 76 YKVVELDLLE--YGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
Query: 205 Q 205
Q
Sbjct: 134 Q 134
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 39.3 bits (92), Expect = 2e-04
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVSAVP 75
K ++ FYA W CK + ++ + K+ K + +V A+ A + YKV P
Sbjct: 24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP 83
Query: 76 TFVILKN---LKPVDRVEGA-DPESLDKKLQNQAST 107
T + P+ G D E L K + A+
Sbjct: 84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK 119
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 38.9 bits (91), Expect = 2e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 159 QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
+E++E +K+ + T P + VN GG + IK+L KL+ +L
Sbjct: 56 EELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESL 100
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 38.4 bits (90), Expect = 3e-04
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIAEDLPKLSLNYKVSAV 74
K +V FYA W CK + + + + + ++ S++ A+ A + L+ Y V
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 75 PTFVILKNLKPVDRVE 90
PT +N E
Sbjct: 83 PTIKFFRNGDTASPKE 98
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 39.0 bits (90), Expect = 3e-04
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
++ + F D+ +C M+ L +++ K + V ++P + Y++ +
Sbjct: 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIK-NFCVIYLVDITEVPDFNTMYELYDPVSV 99
Query: 78 VILKNLKPVDRVEGADPE 95
+ K + G
Sbjct: 100 MFFYRNKHMMIDLGTGNN 117
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 38.1 bits (89), Expect = 3e-04
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ----VVFAR--CIAEDLPKLSLNYK 70
K ++ FYA W CK + ++E+ S+ VV A+ A D+P +
Sbjct: 24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVP-----DE 78
Query: 71 VSAVPTFVILKN---LKPVDRVEGADPESLDKKLQNQAS 106
+ PT + +PV E L K +
Sbjct: 79 IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 38.1 bits (89), Expect = 3e-04
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDE----MSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
+K V +Y WS L+D+ S++ + V AR E P + +VS
Sbjct: 32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS 91
Query: 73 AVPTFVILKNLKPVDRVE 90
PT + + E
Sbjct: 92 GFPTMRYYTRIDKQEPFE 109
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 39.7 bits (92), Expect = 4e-04
Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHM-------NTLFDEMSKQSKYSQVVFA 55
VV ++E+ + ++ K + +Y + K + + +++ ++ + F
Sbjct: 13 VVSLTEK-NFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFV 71
Query: 56 RCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
A+ KL+ + +LK + ++ + L + L +
Sbjct: 72 MVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLI 121
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 38.1 bits (89), Expect = 4e-04
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 3 VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
V++++ + E D +V FYA W C+ + + + + K V A+
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK-DVVKVGAVNADK 77
Query: 62 LPKLSLNYKVSAVPTFVILKN 82
L Y V PT I
Sbjct: 78 HQSLGGQYGVQGFPTIKIFGA 98
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 39.2 bits (91), Expect = 5e-04
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 13/128 (10%)
Query: 15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFAR--CIAEDLPKLSLNYK 70
G V F+A W C + +++ K + A C E + ++
Sbjct: 27 LGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFN 86
Query: 71 VSAVPT--FVILKNLKPVDRVEGADPESLD-------KKLQNQASTMKNQPSNITHVPYD 121
+ PT F V + L++ T + +
Sbjct: 87 IPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLE 146
Query: 122 TFDILQDQ 129
D +
Sbjct: 147 EIDGFFAR 154
Score = 32.7 bits (74), Expect = 0.071
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
+ E ++ + F S + + ++ V R + +
Sbjct: 141 EPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLS------QHKGVAVRRVLNTE 194
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKK--LQNQASTMK 109
+ + V+ P+ +L V RV LQ + +
Sbjct: 195 -ANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTR 243
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 37.2 bits (87), Expect = 6e-04
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
P VV D Q ++++ L+ + T P V+V + IGG +L L L
Sbjct: 46 PLVVELDQLG-PQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 36.1 bits (84), Expect = 7e-04
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG--LDIIKELQVA 196
+ Y+T DI D E R+ + + P V V+ E G + IK+LQ A
Sbjct: 26 LAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQLQAA 75
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG--LDIIKELQVANK 198
++ ++ + E E L+ + P V G D+I L A
Sbjct: 26 FDFEMINVDRVPEAAEALR-AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPH 77
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 38.2 bits (88), Expect = 0.001
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+ T++V FYA W CK +++ F + +K+ QV C L Y V+ PT
Sbjct: 35 NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQ 104
++ + K + + N+
Sbjct: 95 LMVFRPPKIDLSKPIDNAKKSFSAHANE 122
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 38.1 bits (88), Expect = 0.001
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFAR--CIAEDLPKLSLNYKVSA 73
+ K V FYA W CK + ++D++ + K + +V A+ A ++ KV +
Sbjct: 266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA----VKVHS 321
Query: 74 VPTFVILKN 82
PT
Sbjct: 322 FPTLKFFPA 330
Score = 33.5 bits (76), Expect = 0.042
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 7/122 (5%)
Query: 7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKL 65
+ G+ KT ++ F + + F ++ K +F D ++
Sbjct: 124 EQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRI 183
Query: 66 S--LNYKVSAVPTFVIL----KNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVP 119
K P ++ + K E E + + +P
Sbjct: 184 LEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELP 243
Query: 120 YD 121
D
Sbjct: 244 ED 245
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-----SQVVFARCIAEDLPKLSLNYKV 71
A+V+FYADW + ++ +F+E S K +QVVFAR + ++ Y++
Sbjct: 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI 80
Query: 72 SAVPTFVILKN 82
S PT + +N
Sbjct: 81 SKYPTLKLFRN 91
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 35.9 bits (83), Expect = 0.002
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 18 DKTAVVHFYADW--------------SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP 63
D +V F+A+W CK + + DE++ + + ++ A+ + P
Sbjct: 21 DGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNP 79
Query: 64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ Y + +PT ++ KN + GA +
Sbjct: 80 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKG 112
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 36.2 bits (84), Expect = 0.002
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
+VV D + + ++ L + T P+++VN IGG L KL+P +
Sbjct: 54 YKVVELDLLE--YGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
Query: 205 Q 205
Q
Sbjct: 112 Q 112
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 35.8 bits (82), Expect = 0.002
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 148 VPYDTFDILQDQEVREGL--------KIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
+ ++ DI ++E R+ + + + +P PQ++ ++ G D E + N +
Sbjct: 31 IGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFEARENNAV 90
Query: 200 IPTLDQPPSSD 210
L
Sbjct: 91 YAFLGLTAPPG 101
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 35.7 bits (82), Expect = 0.002
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 3/97 (3%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVF---ARCI 58
+ + E K +TA C+ + ++K
Sbjct: 13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQ 72
Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95
DL Y + VP FV + + + R + +
Sbjct: 73 LNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSA 109
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 35.4 bits (81), Expect = 0.003
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 15/117 (12%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYAD-------WSDECKHMNTLFDEMSKQSKYSQVV 53
+SV E + KT +F W +C + E K V
Sbjct: 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS-EGCV 65
Query: 54 FARCIAEDLPKLS-------LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
F C + P N KV+AVPT + + + E ++
Sbjct: 66 FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 33.4 bits (77), Expect = 0.008
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+ F + C + DE K+ ++ + + ++ Y + AVP I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFG-DKIDVEKIDIMVDREKAIEYGLMAVPAIAI-- 61
Query: 82 NLKPVDRVEGADPES-----LDKKLQ 102
V R GA ++ +++
Sbjct: 62 --NGVVRFVGAPSREELFEAINDEME 85
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 33.3 bits (77), Expect = 0.009
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 148 VPYDTFDILQDQEVR-EGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
V Y D +R E ++ + T+PQ+++ +GG D + L+ KL L
Sbjct: 31 VKYTDIDA--STSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQD 87
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 34.1 bits (78), Expect = 0.013
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 17 KDKTAVVHFYADWSDECKHMN--TLFDEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVS 72
++K +++ C+ +N +E K +F + + + YK+
Sbjct: 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLG 100
Query: 73 AVPTFVIL--KNLKPVDRVEGADPESLDKKLQ 102
P IL + + + D S ++
Sbjct: 101 DFPYVSILDPRTGQKLVEWHQLDVSSFLDQVT 132
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.2 bits (79), Expect = 0.027
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 148 VPYDTFDILQDQ---EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
+ + T ++ Q +++ L +S T PQ++V + IG + + ++L ++
Sbjct: 43 IKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
Query: 205 QP 206
+
Sbjct: 103 ES 104
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 33.0 bits (75), Expect = 0.028
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-------VVFARCIAEDLPKLSLNYK 70
K ++ F A+W +C+ ++ + ++ V +L + +
Sbjct: 29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPI 88
Query: 71 VSAVPTFVIL-KNLKPVDRVEGADPES 96
+P V++ + K +G + +
Sbjct: 89 QDGIPAVVVVNSDGKVRYTTKGGELAN 115
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 32.2 bits (74), Expect = 0.036
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 158 DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
+ E+R+ + + T P+++ IGG + E+ + L L
Sbjct: 60 ENELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSS 107
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 31.5 bits (72), Expect = 0.038
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKEL 193
Y DI + +E L+ + P T PQ++V+ + IGG
Sbjct: 31 FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAW 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.081
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 29/153 (18%)
Query: 65 LSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFD 124
L+L S +L+ L +D +++ N I + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLL----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 125 ILQDQEVREGLKIYSN-WPTYPQVVPYDTFD----IL---QDQEVREGLKIYSNWPTYPQ 176
+L+ + L + N + + F+ IL + ++V + L T
Sbjct: 237 LLKSKPYENCLLVLLNVQ--NAKAW--NAFNLSCKILLTTRFKQVTDFLSAA----TTTH 288
Query: 177 VYVNTELIGGLDIIKELQV-ANKL-IPTLDQPP 207
+ ++ L + + L D P
Sbjct: 289 ISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Score = 28.3 bits (62), Expect = 2.4
Identities = 26/217 (11%), Positives = 56/217 (25%), Gaps = 79/217 (36%)
Query: 34 KHMNTLFDEMSKQSKYSQVVFARCI---AEDLPK---------LSL-------------N 68
H + + + + + +DLP+ LS+ N
Sbjct: 292 DHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 69 YKVSAVPTF-----VILKNLKPVD---------------------------RVEGADPES 96
+K L L+P + V +D
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 97 LDKKLQNQASTMKNQPSNITHVPYD-TFDILQDQEVREGL--KIYSNWPTYPQVVPYDTF 153
+ KL S ++ QP T ++ E L I + Y +D+
Sbjct: 407 VVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---YNIPKTFDSD 462
Query: 154 DILQDQEVR----------EGLKIYSNWPTYPQVYVN 180
D++ + + ++ + V+++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.15
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 157 QDQEVR--EG-LKIYSNWP-TYPQVYVNTEL 183
+ Q ++ + LK+Y+ + P + + +
Sbjct: 18 EKQALKKLQASLKLYA--DDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 0.95
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 8/26 (30%)
Query: 127 QDQEVR--EG-LKIYSNWPTYPQVVP 149
+ Q ++ + LK+Y+ P
Sbjct: 18 EKQALKKLQASLKLYA-----DDSAP 38
Score = 26.1 bits (56), Expect = 6.4
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 190 IKELQVANKLI-PTLDQPPS 208
+K+LQ + KL D P+
Sbjct: 22 LKKLQASLKLYAD--DSAPA 39
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 29.7 bits (66), Expect = 0.26
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
+ + + + + + A W C+ LF Q Y + +
Sbjct: 3 LAVGLAAHLRQIGGTM-YGAYWCPHCQDQKELFGAAFDQVPYVE-CSPNGPGTPQAQECT 60
Query: 68 NYKVSAVPTFVI 79
+++ PT++I
Sbjct: 61 EAGITSYPTWII 72
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 30.6 bits (69), Expect = 0.28
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
+ V+FY+ C + + E + + + D L V+
Sbjct: 109 AAVNSGELWFVNFYSPGCSHCHDLAPTWREFA-KEVDGLLRIGAVNCGDDRMLCRMKGVN 167
Query: 73 AVPTFVILKNLKPVDRVEG 91
+ P+ I ++ + G
Sbjct: 168 SYPSLFIFRSGMAAVKYNG 186
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 30.0 bits (67), Expect = 0.34
Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 31/125 (24%)
Query: 18 DKTAVVHFYADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAEDLPKLS--------- 66
+K ++ F C+ M D + V ++ L+
Sbjct: 47 NKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENG 106
Query: 67 -----------------LNYKVSAVPTFVIL-KNLKPVDRVEG--ADPESLDKKLQNQAS 106
+ + +A P +V++ P+++ D LQ
Sbjct: 107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE 166
Query: 107 TMKNQ 111
+ +
Sbjct: 167 NYRKE 171
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 29.3 bits (65), Expect = 0.53
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-IAEDLPKLSLNYKVSAVPT 76
K +V + + + + +F + + + +Q F + + +L+ VP
Sbjct: 44 KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPR 103
Query: 77 FVIL-KNLKPVDRVEGADPESLDK 99
+ + +L + G L
Sbjct: 104 IMFVDPSLTVRADIAGRYSNRLYT 127
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 28.4 bits (64), Expect = 0.62
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 148 VPY-----DTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD 188
V + D + + ++V E + S + P V + + G +
Sbjct: 37 VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN 82
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 28.6 bits (64), Expect = 0.92
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 64 KLSLNYKVSAVPT-FVILKNLKPVDRVEG----ADPESLDKKLQNQASTMKN 110
++ N +S P+ +I K+ V+G A +L + ++K+
Sbjct: 112 TIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADLGSLKH 163
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 29.1 bits (64), Expect = 1.1
Identities = 12/82 (14%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 131 VREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDII 190
R+ +++++ + + + + + + R+ L +Y + + L +
Sbjct: 215 FRDLIRLFACYNDGIINL-LEKYFDMNKKHARDALDLYKKFLVR-----MDRVGEFLKVA 268
Query: 191 KELQVANKLIPTLDQPPSSDLE 212
+ + + IP L + PSS L+
Sbjct: 269 ENVGIDKGDIPDLTKAPSSLLD 290
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 64 KLSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQ 102
KL Y V + P I K K V G + +++ + L+
Sbjct: 95 KLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLK 135
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 28.5 bits (64), Expect = 1.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 164 GLKIYSNWPTYPQVYVNTELIGGLD 188
++ S T PQV++ + IGG D
Sbjct: 210 SVRAVSGRTTVPQVFIGGKHIGGSD 234
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 27.8 bits (62), Expect = 2.0
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 25/102 (24%)
Query: 25 FYADWSDECKHMNT--LFDEMSKQSKYSQVVFARCIA-------------EDLPKLSLNY 69
+A DE K T L D+ KQ + + I E K++ +
Sbjct: 86 LFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN 145
Query: 70 KVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKLQNQAS 106
+ PT I N + +VE + L K++ +
Sbjct: 146 HIKTTPTAFI--NGE---KVEDPYDYESYEKLLKDKIKLEHH 182
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 28.1 bits (61), Expect = 2.2
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
+ + A W C+ LF Q Y + + +++ PT+
Sbjct: 197 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECS-PNGPGTPQAQECTEAGITSYPTW 255
Query: 78 VI 79
+I
Sbjct: 256 II 257
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 27.4 bits (61), Expect = 2.3
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 8 EELDVEKYGKDKTAV-VHFYADWSDECK----HMNTLFDEMSKQSKYSQVVF-------- 54
E++ + KDK + +F A W C+ + ++ E+ S +++F
Sbjct: 15 CEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSED 74
Query: 55 --ARCIAED------LP-------KLSLNYKVSAVPTFVIL 80
+ + E +P ++ Y ++ +P VI+
Sbjct: 75 DMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIV 115
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics
of infec diseases, csgid, oxidoreductase; HET: GSH;
2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 148 VPYDTFDILQD-------QEVREGLKIYSNWPTYPQVYVNTELIGGLD 188
+ +D I E+ + K+ T PQ++++ E IGG
Sbjct: 29 IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFT 76
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 27.2 bits (60), Expect = 3.2
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 17 KDKTAVVHF-YADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAEDLP---------- 63
K + F +DW C M L K +
Sbjct: 46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKN 105
Query: 64 -KLSLNYKVSAVPTFVIL-KNLKPVDRV--EGADPESLDKKLQN 103
+L YKV+ P V + K + R+ E + K+++
Sbjct: 106 QELKAQYKVTGFPELVFIDAEGKQLARMGFEPGGGAAYVSKVKS 149
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 27.6 bits (62), Expect = 3.4
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
TE+I +++ LQ+A
Sbjct: 372 TEMIADVNLPAAQLQIA 388
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 26.9 bits (60), Expect = 3.4
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 24/110 (21%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVF---------ARCIAEDLP---- 63
+ K AV+ F+ W C +++ + V +
Sbjct: 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFT 82
Query: 64 -------KLSLNYKVSAVPTFVILK---NLKPVDRVEGA-DPESLDKKLQ 102
+ Y V P FV + V+ A + L ++
Sbjct: 83 NLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVA 132
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 26.8 bits (60), Expect = 3.5
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 64 KLSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITH 117
++ Y VS +P TF+I K V V G + + + S + H
Sbjct: 94 QVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN---LIKPGETSGLEH 146
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 27.1 bits (60), Expect = 3.6
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 64 KLSLNYKVSAVPT-FVILKNLKPVDRVEGADPESLDKKLQ 102
L + V ++ ++ K+ + L+ ++
Sbjct: 121 SLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELESVIK 160
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 27.3 bits (60), Expect = 3.7
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 71 VSAVPTFVILKNLKPVDRVEGA-DPESLDKKLQ 102
+S P V+ G E+L + L
Sbjct: 174 ISGFPALVVESGTDRYLITTGYRPIEALRQLLD 206
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 27.7 bits (62), Expect = 3.7
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
TE+I +++ LQ+A
Sbjct: 388 TEMIADVNLPAAQLQIA 404
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 26.9 bits (59), Expect = 4.2
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFAR-----CIAEDLPKLSLNY 69
K K +V F + K F +++ S S ++ A + +LS Y
Sbjct: 20 PKSKFVLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY 77
Query: 70 KVSAV--PTFVILKN 82
K+ P F + ++
Sbjct: 78 KLDKESYPVFYLFRD 92
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 26.1 bits (58), Expect = 5.3
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 64 KLSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQ 102
+ N+ V+ P + + VD V G + L +++
Sbjct: 92 SVWANFGVTQQPAYAFVDPHGN-VDVVRGRMSQDELTRRVT 131
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 26.9 bits (60), Expect = 5.6
Identities = 6/17 (35%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
TE++ G+++ LQ+A
Sbjct: 379 TEMVSGVNLPAAQLQIA 395
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 26.7 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
TE+I G+D+IKE L++A
Sbjct: 300 TEMITGVDLIKEQLRIA 316
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 26.7 bits (60), Expect = 7.4
Identities = 6/17 (35%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
+E++ G+DI+K +++A
Sbjct: 299 SEMVTGIDIVKWQIKIA 315
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 25.8 bits (57), Expect = 7.6
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
+K+ + K V F +E F +M + V FA+ +E + KLS ++ V
Sbjct: 55 DKFHESKNFEVVFCTWDEEE-DGFAGYFAKM----PWLAVPFAQ--SEAVQKLSKHFNVE 107
Query: 73 AVPTFVIL 80
++PT + +
Sbjct: 108 SIPTLIGV 115
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 26.3 bits (59), Expect = 7.7
Identities = 7/17 (41%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
+E++ G+DII++ ++VA
Sbjct: 304 SEMVSGIDIIEQMIKVA 320
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 26.3 bits (57), Expect = 7.9
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS---QVVFARCIAEDLPKLSLNYKVSA 73
K + + C + L + ++ ++ A + P ++ Y V +
Sbjct: 137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMS 196
Query: 74 VPTFVI 79
VP+ I
Sbjct: 197 VPSIAI 202
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 26.3 bits (59), Expect = 8.6
Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 181 TELIGGLDIIKE-LQVA 196
TE++ G+D++K LQVA
Sbjct: 300 TEMVTGIDLVKLQLQVA 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.387
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,223,538
Number of extensions: 180038
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 200
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)