RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15246
(213 letters)
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 62.9 bits (152), Expect = 9e-14
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 1 MSVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
+ V + + D + + AVV F C + S +KY Q VF
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIA--PAFSSMSNKYPQAVFLEV 58
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+ +SA PTF +N +D+ +GAD L++K++
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 62.1 bits (150), Expect = 2e-13
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 3 VVQISEE--LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
V +++++ + K DK V+ + W CK M +++++++ + +
Sbjct: 8 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLK-LDCNQ 66
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
+ L+ + VPTF ILK V V GA + L + +Q S
Sbjct: 67 ENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 112
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 61.3 bits (148), Expect = 5e-13
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
+V E + K G K VV F A W CK + +F E++K+ + V F + ++
Sbjct: 11 TVDTWKEHFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKK--FPNVTFLKVDVDE 67
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
L ++ + V A+PTF+ LK+ K VD+ GAD + L + A+
Sbjct: 68 LKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 60.1 bits (145), Expect = 1e-12
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V QI + ++ DK VV F A W CK + F +S++ YS V+F
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEK--YSNVIFLEVDV 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
+D ++ +V +PTF K + V GA+ E L+ +
Sbjct: 60 DDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 59.8 bits (144), Expect = 2e-12
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 2 SVVQIS--EELD--VEKYGKD-KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
SV+ I D + K ++ K VV F A W CK + LF+ +S +V+F +
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLK 61
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
+ + ++ ++A+PTF + K+ D + GA + L + A+
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 58.7 bits (141), Expect = 3e-12
Identities = 26/105 (24%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
+ +V E D +++ +V F+A+W CK + ++E SK Y+++VF + +
Sbjct: 2 VKIVTSQAEFD-SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKT--YTKMVFIKVDVD 58
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
++ +++ ++++PTF + KN VD + GA+ +L + ++ A
Sbjct: 59 EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 57.7 bits (139), Expect = 7e-12
Identities = 35/55 (63%), Positives = 47/55 (85%)
Query: 149 PYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV +L+GGLDI+KEL+ +L+P L
Sbjct: 46 EYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPIL 100
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 59.7 bits (144), Expect = 1e-11
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 2 SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
V ++ +EK K T VV+ Y D C +N+ + ++ + +
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC---K 156
Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
I + +PT ++ K + + + +
Sbjct: 157 IRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAED 198
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 56.0 bits (134), Expect = 4e-11
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 1 MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
SVV + S E +D V F A W CK + ++ V FA+ A
Sbjct: 8 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIE--RPMEKIAYEFPTVKFAKVDA 65
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
++ ++ +V +PTF+I ++ K + V GA+P L +KL++
Sbjct: 66 DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRD 109
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 53.9 bits (129), Expect = 3e-10
Identities = 10/86 (11%), Positives = 23/86 (26%)
Query: 11 DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
D D ++ + E + E+ ++ A E + +
Sbjct: 29 DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG 88
Query: 71 VSAVPTFVILKNLKPVDRVEGADPES 96
V P ++ + G P +
Sbjct: 89 VFRFPATLVFTGGNYRGVLNGIHPWA 114
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 53.5 bits (128), Expect = 4e-10
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
V+ S D K D ++ + E + E+ ++ A E
Sbjct: 15 PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS 74
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ + V P ++ + K + G P +
Sbjct: 75 EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWA 108
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 52.9 bits (126), Expect = 5e-10
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V+ I++ + E ++ +V+F+A W C+ M+ L + + ++ +
Sbjct: 2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS-DRLKVVKLEI 60
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
+ P YKV VP ++K + +D EG +
Sbjct: 61 DPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKD 97
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 52.9 bits (126), Expect = 6e-10
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
VV F A W C+ + F +++K+ + ++ ++ + A+PT
Sbjct: 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--KSVASDWAIQAMPT 84
Query: 77 FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
F+ LK K +D+V GA + L + +
Sbjct: 85 FMFLKEGKILDKVVGAKKDELQSTIAKHLA 114
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 51.1 bits (122), Expect = 1e-09
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
V + I + RE + S T PQ++++ + IGG D + L L P L
Sbjct: 26 VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL 81
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 50.3 bits (119), Expect = 5e-09
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
V Q+ ++ D++ K V+ F+A W CK ++ E+S Q VV +
Sbjct: 7 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDV 65
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
++ +++ Y +S++PTFV LKN V+ GA+ + L+ ++
Sbjct: 66 DECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 108
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 49.8 bits (118), Expect = 6e-09
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 3 VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
++ ++++ D + D +V F+A+W CK + + DE++ + ++ A+ +
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQGKLTVAKLNIDQ 62
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
P + Y + +PT ++ KN + GA +
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKG 97
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 49.4 bits (117), Expect = 9e-09
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
+ + +++ + DK +V F+A W C+ M + +E ++ +V A+ ++
Sbjct: 1 ATMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-DKVTVAKLNVDE 59
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQ 102
P+ + + + ++PT ++ K +PV ++ G P+ L LQ
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 47.2 bits (112), Expect = 4e-08
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
+ Y DI QD +R+ ++ + P T PQ+ G ++ E + L L
Sbjct: 33 IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 47.6 bits (112), Expect = 4e-08
Identities = 18/97 (18%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 1 MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
M ++++ +V F+A W C+ + + DE++ + K ++ +
Sbjct: 1 MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNT 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
++ P ++ Y + ++PT ++ K K + + GA P++
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKA 96
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 47.0 bits (111), Expect = 6e-08
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 136 KIYSNWPTYPQVVPYDTFDILQDQEVREG-LKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194
++ S P ++ + D + L+ + T P+V++ E IGG ++ +
Sbjct: 30 ELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMH 89
Query: 195 VANKLIPTLDQ 205
+L+ L Q
Sbjct: 90 KRGELLTRLQQ 100
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 43.7 bits (102), Expect = 2e-06
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAE 60
V+ + + E K +V FYA W CK + + + + + K ++ A+ A
Sbjct: 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
+ L+ Y V PT +N E D
Sbjct: 69 EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADD 107
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 43.4 bits (101), Expect = 2e-06
Identities = 16/98 (16%), Positives = 40/98 (40%)
Query: 2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
+VV+++ + E + F+A W CK+M + + ++ + A+ +
Sbjct: 11 AVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE 70
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
L + + + P+ I KN + ++ P + +
Sbjct: 71 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEA 108
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 43.2 bits (101), Expect = 3e-06
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+D+ V+ F DW C M+ + ++++ + V ++P + Y++ T
Sbjct: 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEK-VKNFAVIYLVDITEVPDFNKMYELYDPCT 79
Query: 77 FVILKNLKPVDRVEGADPES 96
+ K + G +
Sbjct: 80 VMFFFRNKHIMIDLGTGNNN 99
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 41.7 bits (97), Expect = 5e-06
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 3 VVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQVVFARCIAE 60
V + ++ + K ++ FYA W CK + ++E+ +K
Sbjct: 4 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 63
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
D + ++ PT + V + +++
Sbjct: 64 DATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVED 102
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 40.1 bits (93), Expect = 1e-05
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQVA 196
++ ++ + E E L + P V G D+I L A
Sbjct: 26 FDFEMINVDRVPEAAEAL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHPA 75
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 41.0 bits (95), Expect = 2e-05
Identities = 9/108 (8%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSD------ECKHMNTLFDEMSKQSKYSQVVFAR 56
V+ ++ + + K + + ++ D + + + + ++ + V F
Sbjct: 13 VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGL 72
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQ 104
+E ++ ++ + + K + ++ ++L + L +
Sbjct: 73 VDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDV 120
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 40.0 bits (93), Expect = 2e-05
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKEL 193
Y DI + +E L+ + P T PQ++V+ + IGG
Sbjct: 28 RDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAW 78
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 40.3 bits (93), Expect = 2e-05
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK---YSQVVFARCIA 59
+ + E K +TA C+ + ++K Y
Sbjct: 11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
DL Y + VP FV + + + R + +
Sbjct: 71 NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQ 107
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 39.2 bits (91), Expect = 2e-05
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQ 194
+ Y+T DI D E R+ + + P V V+ E G + IK+LQ
Sbjct: 26 LAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQLQ 73
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 39.3 bits (91), Expect = 2e-05
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
+ F + C + DE K+ V I D + ++ Y + AVP I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD-REKAIEYGLMAVPAIAING 63
Query: 82 NLKPVDRVEGADPES-----LDKKLQ 102
++ GA ++ +++
Sbjct: 64 VVR----FVGAPSREELFEAINDEME 85
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 40.6 bits (94), Expect = 2e-05
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Query: 2 SVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
SV Q+ + D K +V +YA W CK + + E++ + +
Sbjct: 13 SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD 72
Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
+ PT V+ K + V SLD
Sbjct: 73 HTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDS 111
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 38.8 bits (89), Expect = 4e-05
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
K + F + C + +E++ + + V + E+ K ++ Y + AVPT V
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK-AMEYGIMAVPTIV 61
Query: 79 ILKNLKPVDRVEGADPES-----LDKKL 101
I +++ GA + + K+L
Sbjct: 62 INGDVE----FIGAPTKEALVEAIKKRL 85
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 38.7 bits (89), Expect = 7e-05
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEM---SKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
++ F C + + + ++ +++ A + P+ + Y V A
Sbjct: 14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 73
Query: 74 VPTFVILKNLKPVDRVEGADPES-LDKKLQNQAS 106
VP VI N + EGA PE +KL + S
Sbjct: 74 VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 107
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 37.6 bits (87), Expect = 8e-05
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192
+ ++ + D ++ S T PQV++ + IGG D +++
Sbjct: 30 LSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEK 73
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 36.5 bits (84), Expect = 5e-04
Identities = 10/113 (8%), Positives = 25/113 (22%), Gaps = 9/113 (7%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHM------NTLFDEMSKQSKYSQVVFAR 56
+ + + K K +V F + K +
Sbjct: 6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYG 65
Query: 57 CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVE---GADPESLDKKLQNQAS 106
+ P F + ++ + V ++ + L+ Q
Sbjct: 66 DKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQGV 118
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 36.1 bits (82), Expect = 5e-04
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 3 VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
V +++ + +V F+A W CK + + DE++K+ ++ + ++
Sbjct: 1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE-YSGKIAVYKLNTDE 59
Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
P ++ Y + ++PT + KN + + + GA P+S
Sbjct: 60 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKS 94
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 35.1 bits (80), Expect = 8e-04
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV-NTELIGGLDIIKEL 193
D + + + + T PQV+ + IGG D ++E
Sbjct: 39 EKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQLREY 85
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 34.3 bits (78), Expect = 0.003
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 7/100 (7%)
Query: 3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA--- 59
V + E + + +VV F KH S ++ A
Sbjct: 4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDY 63
Query: 60 --EDLPKLSLNYK--VSAVPTFVILKNLKPVDRVEGADPE 95
+ L YK P+ + K + +
Sbjct: 64 GELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVD 103
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 34.1 bits (77), Expect = 0.004
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 17 KDKTAVVHFYADWSDECKH----MNTLFDEMSKQSKYSQVVFARCIAEDLPK-------- 64
+K ++HF++ CK +N D+ Q V R + P
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE 87
Query: 65 --------------LSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQ 102
L+ ++ VP +V K + G + L+K++
Sbjct: 88 HDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 32.5 bits (73), Expect = 0.015
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVP 75
+V + W CK + F E ++ S+ S V E+ PK
Sbjct: 24 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYI 83
Query: 76 TFVIL--KNLKPVDRVEGADPE 95
++ + K + +
Sbjct: 84 PRILFLDPSGKVHPEIINENGN 105
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 32.2 bits (72), Expect = 0.019
Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 30/117 (25%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVF---------------------- 54
KDK ++ F+A W C ++ ++ +K+S
Sbjct: 22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 81
Query: 55 ------ARCIAEDLPKLSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQN 103
+ ++ ++ + +S P +I K+ V+G+ + +++
Sbjct: 82 GLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD 138
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 134
Score = 31.5 bits (70), Expect = 0.029
Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 4/84 (4%)
Query: 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK- 81
V + + + + + Y V P FV +
Sbjct: 49 VAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRA 108
Query: 82 --NLKPVDRVEGA-DPESLDKKLQ 102
V+ A + L ++
Sbjct: 109 DGTSTFVNNPTAAMSQDELSGRVA 132
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 30.4 bits (67), Expect = 0.082
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ---------------- 51
+ + + K +++ +A W + + +++S Q
Sbjct: 10 QFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 69
Query: 52 ---VVFARCIAEDLPKLSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQN 103
+A + + L L+ V P TF+I N R G +P +++++
Sbjct: 70 ELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP 126
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 132
Score = 29.7 bits (67), Expect = 0.13
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 131 VREGLKIYSNWPTYPQVVPY--DTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD 188
++ +++++ Y + + + + ++ + +EGL IY + T T + L
Sbjct: 52 FKDAIRLFA---AYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLT-----RMTRISEFLK 103
Query: 189 IIKELQVANKLIPTLDQPPSSDLE 212
+ +++ + IP L Q PSS L+
Sbjct: 104 VAEQVGIDRGDIPDLSQAPSSLLD 127
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 133
Score = 29.3 bits (66), Expect = 0.15
Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 131 VREGLKIYS--NWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD 188
R+ +++++ N + + + + + R+ L +Y + + L
Sbjct: 49 FRDLIRLFACYNDGI---INLLEKYFDMNKKHARDALDLYKKFLV-----RMDRVGEFLK 100
Query: 189 IIKELQVANKLIPTLDQPPSSDLE 212
+ + + + IP L + PSS L+
Sbjct: 101 VAENVGIDKGDIPDLTKAPSSLLD 124
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase
subunit F (AhpF), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 96
Score = 26.2 bits (57), Expect = 1.2
Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 2/77 (2%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
+Y+ C + + M+ ++ V VP
Sbjct: 14 DGDFEFETYYSLSCHNCPDVVQALNLMAV--LNPRIKHTAIDGGTFQNEITERNVMGVPA 71
Query: 77 FVILKNLKPVDRVEGAD 93
+ R+ +
Sbjct: 72 VFVNGKEFGQGRMTLTE 88
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 27.1 bits (59), Expect = 1.2
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 25/90 (27%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------------- 61
KT +F A W + + K + I+ D
Sbjct: 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPW 86
Query: 62 ----------LPKLSLNYKVSAVPTFVILK 81
+ L+ + V ++PT V ++
Sbjct: 87 LALPFEDRKGMEFLTTGFDVKSIPTLVGVE 116
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 26.4 bits (58), Expect = 1.5
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 23 VHFYADWSDE--CKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80
+ + C + L E+S+ + + +L+ Y++ P I
Sbjct: 26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT 85
Query: 81 KN 82
++
Sbjct: 86 QD 87
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 27.2 bits (60), Expect = 1.5
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 83 LKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWP 142
L + E+L Q + NI H + + L+ ++ +
Sbjct: 335 LFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYR 394
Query: 143 TYPQVVPYDTF-DILQDQEVREGLK-IYSNW 171
+ PY +F ++ ++E+ L+ +Y +
Sbjct: 395 KRFGMKPYTSFQELTGEKEMAAELEELYGDI 425
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.9 bits (52), Expect = 6.2
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNT 38
+ +SE +DV Y+DW D C+ +
Sbjct: 59 TPITYLSEPVDV-------------YSDWIDACESGPS 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.387
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,057
Number of extensions: 35162
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 61
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)