BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15247
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
Length = 367
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELY-----QMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G E V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVA 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE +F VK++SIL C P + P + L + VV IDL
Sbjct: 129 LVGQGLQEGERDFGVKARSILCCMRHQP-NWSPKVVELCKKYQQQTVVAIDL 179
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQ-SWGFTREQFKIINLNAAEASFQP 185
+ D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELY-----QMLGYEGLKETVR 61
+ G DA++R AYEF+E +K+ V YVEVRY PH L +++ Q G E V
Sbjct: 72 IAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVS 131
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE +F VK +SIL C P + + L + VV IDL
Sbjct: 132 LVNQGLQEGERDFGVKVRSILCCMRHQP-SWSSEVVELCKKYREQTVVAIDL 182
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D N+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 282 RFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 336
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELY-----QMLGYEGLKETVR 61
+ G DA++R AYEF+E +K+ V YVEVRY PH L +++ Q G E V
Sbjct: 71 IAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVS 130
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE +F VK +SIL C P + + L + VV IDL
Sbjct: 131 LVNQGLQEGERDFGVKVRSILCCMRHQP-SWSSEVVELCKKYREQTVVAIDL 181
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D N+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 281 RFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 335
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELY-----QMLGYEGLKETVR 61
+ G DA++R AYEF+E +K+ V YVEVRY PH L +++ Q G E V
Sbjct: 72 IAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVS 131
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE +F VK +SIL C P + + L + VV IDL
Sbjct: 132 LVNQGLQEGERDFGVKVRSILCCMRHQP-SWSSEVVELCKKYREQTVVAIDL 182
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D N+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 282 RFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 336
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELY-----QMLGYEGLKETVR 61
+ G DA++R AYEF+E +K+ V YVEVRY PH L +++ Q G E V
Sbjct: 71 IAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVS 130
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE +F VK +SIL C P + + L + VV IDL
Sbjct: 131 LVNQGLQEGERDFGVKVRSILCCMRHQP-SWSSEVVELCKKYREQTVVAIDL 181
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D N+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 281 RFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 335
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 73 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 132
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114
V QGL GE F +K +SIL C P ++ + L L + VV +DL+
Sbjct: 133 LVNQGLHEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDLI 184
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+D P L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 283 RFKNDKANYSLNTDAPLEFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 337
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 72 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 131
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 132 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 182
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 282 RFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 336
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 129 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 179
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 72 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 131
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 132 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 182
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 282 RFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 336
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 129 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 179
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 129 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 179
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 129 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 179
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN+D P + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RFKNDKANYSLNTDAPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTEL-----YQMLGYEGLKETVR 61
+ G +A++R AYEF+E +K V YVEVRY PH L +++ Q G + V
Sbjct: 69 IAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVD 128
Query: 62 RVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
V QGL+ GE F +K +SIL C P ++ + L L + VV +DL
Sbjct: 129 LVNQGLQEGEQAFGIKVRSILCCMRHQPSWSL-EVLELCKKYNQKTVVAMDL 179
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQP 185
+F D AN+SLN++DP + L+ DYQ+ + GFT E+FK +N+NAA++SF P
Sbjct: 279 RFKNDKANYSLNTEDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 141 SLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASF 183
S+NSDDP + +N++Y+ L FT E+F I+N A E SF
Sbjct: 319 SVNSDDPGMFLSNINDNYEKLYIHLNFTLEEFMIMNNWAFEKSF 362
>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
Length = 326
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 141 SLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASF 183
++NSDDP G Y+ E++ L QS G T EQ + + N+ +A
Sbjct: 273 TVNSDDPAYFGGYVTENFHALQQSLGXTEEQARRLAQNSLDARL 316
>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
Vivax In Complex With Mt-Coformycin
Length = 371
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 141 SLNSDDPTLTGRYLNEDY-QLAQSWGFTREQFKIINLNAAEASFQ 184
S+NSDDP + +N+DY +L FT E F +N A E SF
Sbjct: 306 SVNSDDPGMFLTNINDDYEELYTHLNFTLEDFMKMNEWALEKSFM 350
>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
Asp172) From Plasmodium Vivax In Complex With
Mt-Coformycin
Length = 370
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 141 SLNSDDPTLTGRYLNEDY-QLAQSWGFTREQFKIINLNAAEASFQ 184
S+NSDDP + +N+DY +L FT E F +N A E SF
Sbjct: 305 SVNSDDPGMFLTNINDDYEELYTHLNFTLEDFMKMNEWALEKSFM 349
>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
Length = 380
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGE 71
D + R AYE++ED + +NV + E + P GT + Y + + G++
Sbjct: 92 DDLRRIAYEYLEDAAAHNVRHAEFFWNP---TGTVRVSGIPYADAQAA---IVTGMRDAA 145
Query: 72 DEFQVKSKSILSC 84
+F + ++ I S
Sbjct: 146 RDFGIGARLIPSI 158
>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Adenosine
pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Pentostatin
pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Guanosine
Length = 371
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 141 SLNSDDPTLTGRYLNEDY-QLAQSWGFTREQFKIINLNAAEASF 183
S+NSDDP +N+DY +L FT E F N A E SF
Sbjct: 314 SVNSDDPGXFLTNINDDYEELYTHLNFTLEDFXKXNEWALEKSF 357
>pdb|2KDK|A Chain A, Structure Of Human Circadian Clock Protein Bmal2
C-Terminal Pas Domain
Length = 121
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 20 EFIEDCSKN-NVAYVEVR------YMPHKLLGTELYQML---GYEGLKETVRRVYQGLKR 69
EFI + N YV+ R Y+P +LLGT Y+ + L + + V Q ++
Sbjct: 14 EFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEK 73
Query: 70 ---GEDEFQVKSKSILSCATKWPVDTVPDTLRL 99
+F+ K S ++ ++W T PDT L
Sbjct: 74 ILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKEL 106
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 68 KRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQN 102
+R EFQ K K +LS K + VP L+LA N
Sbjct: 7 RRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALN 41
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 139 NFSLNSDDPTLTGRYLNEDY-QLAQSWGFTREQFKIINLNAAEASF 183
N +NSDDP G Y+++++ QL + F+ + + N+ +SF
Sbjct: 274 NVCVNSDDPAYFGGYVDDNFEQLVKVLEFSVPEQATLAANSIRSSF 319
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 37 YMPHKLLGTELYQMLGYEG---LKETVRRVYQGLKRGED---EFQVKSKSILSCATKW 88
Y+P +LLGT Y+ + L E R+V Q ++ +F++K S ++ ++W
Sbjct: 303 YLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRW 360
>pdb|2ZQ5|A Chain A, Crystal Structure Of Sulfotransferase Stf1 From
Mycobacterium Tuberculosis H37rv (Type1 Form)
Length = 384
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 114 LSIQPETGPHGSVYSYNQKFAKDNANFSLN-SDDPTLTGRYLNEDYQLAQSWGFTREQFK 172
L+ P+ P + N + + +A+F+ + +++P TG + Y+L + W R+
Sbjct: 124 LAEYPQPRPPRETWESNPLYRQLDADFTQHHAENPGYTGLHFMAAYELEECWQLLRQSLH 183
Query: 173 IINLNA 178
++ A
Sbjct: 184 SVSYEA 189
>pdb|3THA|A Chain A, Tryptophan Synthase Subunit Alpha From Campylobacter
Jejuni.
pdb|3THA|B Chain B, Tryptophan Synthase Subunit Alpha From Campylobacter
Jejuni
Length = 252
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 70 GEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSI 116
G ++F K+KS+ CA P + ++ L + C Y + I L+S+
Sbjct: 104 GLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,727,143
Number of Sequences: 62578
Number of extensions: 232929
Number of successful extensions: 526
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 39
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)