Query psy15247
Match_columns 203
No_of_seqs 117 out of 1086
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 01:08:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00124 adenosine deaminase; 100.0 7.6E-44 1.6E-48 314.3 20.2 184 5-196 96-361 (362)
2 cd01321 ADGF Adenosine deamina 100.0 3.5E-43 7.6E-48 308.8 21.1 190 6-200 60-345 (345)
3 PF00962 A_deaminase: Adenosin 100.0 9.8E-43 2.1E-47 303.2 16.2 181 10-195 72-331 (331)
4 KOG1097|consensus 100.0 7.5E-41 1.6E-45 293.0 20.1 193 3-202 108-389 (399)
5 TIGR01431 adm_rel adenosine de 100.0 2.6E-40 5.7E-45 300.8 21.6 191 6-201 187-472 (479)
6 cd00443 ADA_AMPD Adenosine/AMP 100.0 3.3E-39 7.1E-44 279.4 20.6 182 6-195 37-304 (305)
7 COG1816 Add Adenosine deaminas 100.0 3.5E-39 7.6E-44 281.2 17.9 190 4-200 73-341 (345)
8 PRK09358 adenosine deaminase; 100.0 1.8E-34 4E-39 252.6 22.7 187 8-201 73-339 (340)
9 TIGR01430 aden_deam adenosine 100.0 6.8E-34 1.5E-38 247.5 21.5 183 7-196 63-324 (324)
10 cd01320 ADA Adenosine deaminas 100.0 1.1E-30 2.4E-35 227.1 21.0 181 9-196 66-325 (325)
11 cd01319 AMPD AMP deaminase (AM 99.8 2.9E-19 6.2E-24 162.8 17.3 168 12-196 162-464 (496)
12 PLN03055 AMP deaminase; Provis 99.8 1.1E-18 2.4E-23 161.2 17.6 168 11-195 251-553 (602)
13 PLN02768 AMP deaminase 99.8 3.9E-18 8.4E-23 160.5 16.7 168 11-195 484-786 (835)
14 TIGR01429 AMP_deaminase AMP de 99.8 1.1E-17 2.5E-22 154.9 17.8 67 129-195 504-575 (611)
15 PTZ00310 AMP deaminase; Provis 99.7 5.5E-16 1.2E-20 152.9 18.2 68 129-196 546-618 (1453)
16 PTZ00310 AMP deaminase; Provis 99.7 1.3E-15 2.8E-20 150.3 17.2 166 12-194 947-1245(1453)
17 KOG1096|consensus 99.1 1.3E-09 2.7E-14 101.2 10.8 167 11-194 420-722 (768)
18 TIGR01224 hutI imidazoloneprop 99.0 1.6E-08 3.5E-13 89.4 15.5 163 10-186 89-335 (377)
19 cd01296 Imidazolone-5PH Imidaz 98.8 5.2E-07 1.1E-11 79.5 16.4 160 10-185 86-330 (371)
20 PRK09230 cytosine deaminase; P 98.0 0.00032 7E-09 63.6 15.4 91 9-115 95-187 (426)
21 cd01292 metallo-dependent_hydr 97.6 0.0024 5.1E-08 52.3 13.9 156 10-179 29-273 (275)
22 PRK09356 imidazolonepropionase 96.1 0.7 1.5E-05 41.2 17.2 56 131-186 302-361 (406)
23 cd01305 archeal_chlorohydrolas 96.1 0.014 3.1E-07 49.1 5.9 43 131-173 207-254 (263)
24 PRK07213 chlorohydrolase; Prov 95.5 0.024 5.1E-07 50.5 5.1 52 131-182 270-323 (375)
25 PRK08393 N-ethylammeline chlor 95.1 1.7 3.7E-05 39.2 15.9 56 129-184 279-346 (424)
26 COG1228 HutI Imidazolonepropio 93.3 0.21 4.6E-06 45.3 6.1 53 131-183 300-354 (406)
27 PRK06687 chlorohydrolase; Vali 93.2 6.1 0.00013 35.5 16.1 57 129-185 286-354 (419)
28 cd01299 Met_dep_hydrolase_A Me 93.1 0.27 5.8E-06 42.6 6.3 55 131-185 257-314 (342)
29 PRK14085 imidazolonepropionase 89.8 0.81 1.8E-05 40.7 5.9 55 131-185 286-344 (382)
30 smart00148 PLCXc Phospholipase 89.3 1.1 2.3E-05 34.3 5.5 74 19-97 31-107 (135)
31 cd01312 Met_dep_hydrolase_D Me 89.2 1.4 3.1E-05 39.3 7.1 53 131-183 274-334 (381)
32 cd01298 ATZ_TRZ_like TRZ/ATZ f 89.2 1.5 3.2E-05 38.7 7.1 55 131-185 287-352 (411)
33 PF13147 Amidohydro_4: Amidohy 88.7 0.76 1.6E-05 37.7 4.6 50 131-180 230-284 (304)
34 PRK06886 hypothetical protein; 87.1 2.3 5E-05 37.5 6.9 50 131-180 266-323 (329)
35 TIGR03314 Se_ssnA putative sel 86.9 23 0.0005 32.2 13.5 30 131-163 297-326 (441)
36 cd01309 Met_dep_hydrolase_C Me 86.5 2.2 4.8E-05 37.7 6.5 54 131-184 264-319 (359)
37 PRK08204 hypothetical protein; 86.5 2.3 4.9E-05 38.5 6.7 56 131-186 287-363 (449)
38 cd01293 Bact_CD Bacterial cyto 86.1 1.8 3.9E-05 38.0 5.7 30 10-39 90-119 (398)
39 TIGR02022 hutF formiminoglutam 86.0 27 0.00059 31.9 15.8 28 10-37 94-121 (455)
40 PRK09045 N-ethylammeline chlor 84.7 3.2 7E-05 37.6 6.8 57 129-185 292-360 (443)
41 cd01303 GDEase Guanine deamina 82.4 4.3 9.4E-05 36.7 6.6 55 131-185 304-371 (429)
42 PRK06846 putative deaminase; V 81.4 3.9 8.6E-05 36.7 6.0 40 131-170 297-342 (410)
43 PF00388 PI-PLC-X: Phosphatidy 80.5 2.1 4.5E-05 32.8 3.4 71 20-98 30-106 (146)
44 TIGR02967 guan_deamin guanine 79.0 7.8 0.00017 34.4 7.1 55 131-185 282-343 (401)
45 PRK08418 chlorohydrolase; Prov 78.6 8 0.00017 34.8 7.0 54 131-184 297-358 (408)
46 PRK00994 F420-dependent methyl 76.4 22 0.00047 30.2 8.3 85 52-150 11-100 (277)
47 PRK07572 cytosine deaminase; V 76.3 6.8 0.00015 35.4 5.9 26 10-35 92-117 (426)
48 PRK06380 metal-dependent hydro 76.2 6.8 0.00015 35.1 5.9 53 131-183 280-343 (418)
49 PRK05985 cytosine deaminase; P 75.6 7.7 0.00017 34.4 6.0 24 10-33 92-115 (391)
50 PRK15493 5-methylthioadenosine 74.9 11 0.00025 34.1 7.0 54 131-184 290-354 (435)
51 cd00137 PI-PLCc Catalytic doma 74.9 13 0.00028 31.8 7.0 65 20-90 38-105 (274)
52 cd01300 YtcJ_like YtcJ_like me 74.0 7.8 0.00017 35.4 5.8 55 131-186 396-464 (479)
53 cd01313 Met_dep_hydrolase_E Me 73.9 13 0.00028 33.5 7.1 28 10-37 85-112 (418)
54 cd07948 DRE_TIM_HCS Saccharomy 73.5 45 0.00098 28.3 9.9 88 22-117 77-167 (262)
55 PRK12393 amidohydrolase; Provi 71.7 9.8 0.00021 34.7 5.8 54 131-184 311-374 (457)
56 PRK09228 guanine deaminase; Pr 71.0 17 0.00038 32.9 7.3 55 131-185 307-368 (433)
57 PRK08203 hydroxydechloroatrazi 71.0 11 0.00023 34.3 5.9 55 131-185 307-371 (451)
58 PRK07583 cytosine deaminase-li 70.0 14 0.00031 33.5 6.5 29 10-38 116-144 (438)
59 PRK06038 N-ethylammeline chlor 68.7 13 0.00029 33.5 6.0 56 129-184 280-347 (430)
60 PRK00912 ribonuclease P protei 65.7 23 0.00051 29.2 6.5 46 131-176 161-207 (237)
61 PF04262 Glu_cys_ligase: Gluta 63.3 5.6 0.00012 35.8 2.4 30 21-59 311-343 (377)
62 PRK07203 putative chlorohydrol 62.3 25 0.00054 31.8 6.5 28 131-161 298-325 (442)
63 PF13407 Peripla_BP_4: Peripla 62.0 74 0.0016 25.6 8.8 75 59-145 12-89 (257)
64 TIGR01975 isoAsp_dipep isoaspa 61.4 23 0.0005 31.9 6.0 51 131-181 269-340 (389)
65 PRK08392 hypothetical protein; 61.4 15 0.00032 30.0 4.4 41 131-171 168-209 (215)
66 PRK09229 N-formimino-L-glutama 60.7 12 0.00026 34.1 4.1 26 10-35 94-119 (456)
67 TIGR01434 glu_cys_ligase gluta 57.8 11 0.00024 35.3 3.4 29 21-58 310-341 (512)
68 PRK02107 glutamate--cysteine l 57.7 11 0.00024 35.4 3.4 29 21-58 314-345 (523)
69 PF07969 Amidohydro_3: Amidohy 57.4 16 0.00034 32.2 4.2 57 129-186 316-389 (404)
70 cd02907 Macro_Af1521_BAL_like 56.5 95 0.0021 24.3 8.3 57 10-75 93-149 (175)
71 cd06270 PBP1_GalS_like Ligand 55.8 74 0.0016 25.7 7.8 50 59-111 13-62 (268)
72 PRK07228 N-ethylammeline chlor 55.6 30 0.00065 31.2 5.8 56 129-184 289-356 (445)
73 PF09820 AAA-ATPase_like: Pred 54.5 23 0.00051 30.3 4.7 57 141-200 202-258 (284)
74 TIGR02090 LEU1_arch isopropylm 54.5 1.6E+02 0.0034 26.2 10.3 90 20-117 75-167 (363)
75 COG1242 Predicted Fe-S oxidore 52.6 90 0.0019 27.3 7.7 31 85-117 94-124 (312)
76 cd06295 PBP1_CelR Ligand bindi 50.3 1.2E+02 0.0025 24.7 8.1 53 59-116 24-76 (275)
77 PRK06361 hypothetical protein; 50.0 30 0.00064 27.9 4.4 46 131-176 155-201 (212)
78 PRK13347 coproporphyrinogen II 50.0 1.3E+02 0.0028 27.6 9.0 57 53-115 184-243 (453)
79 PF07615 Ykof: YKOF-related Fa 49.5 85 0.0018 21.7 6.2 67 12-90 14-80 (81)
80 TIGR01435 glu_cys_lig_rel glut 49.0 17 0.00038 35.6 3.3 17 21-37 259-275 (737)
81 cd02908 Macro_Appr_pase_like M 47.6 1.1E+02 0.0023 23.8 7.1 56 9-73 85-140 (165)
82 PF01261 AP_endonuc_2: Xylose 47.2 86 0.0019 24.2 6.7 126 22-163 1-152 (213)
83 cd01093 CRIB_PAK_like PAK (p21 46.9 19 0.00042 22.2 2.2 35 135-171 10-45 (46)
84 cd01293 Bact_CD Bacterial cyto 45.7 1.6E+02 0.0034 25.6 8.6 53 131-183 293-356 (398)
85 cd07939 DRE_TIM_NifV Streptomy 45.4 1.8E+02 0.0039 24.3 9.7 89 22-118 75-167 (259)
86 cd08207 RLP_NonPhot Ribulose b 45.4 1.5E+02 0.0033 27.0 8.6 77 10-104 157-236 (406)
87 PRK04143 hypothetical protein; 44.9 98 0.0021 26.5 6.9 68 10-86 181-248 (264)
88 COG1574 Predicted metal-depend 44.8 54 0.0012 31.0 5.7 56 129-184 418-486 (535)
89 PRK11858 aksA trans-homoaconit 44.8 2.1E+02 0.0045 25.6 9.3 90 21-117 80-171 (378)
90 cd08590 PI-PLCc_Rv2075c_like C 44.6 1.1E+02 0.0024 26.0 7.3 16 23-38 48-63 (267)
91 cd08619 PI-PLCXDc_plant Cataly 44.6 87 0.0019 27.2 6.6 44 22-68 62-105 (285)
92 PF05589 DUF768: Protein of un 44.0 21 0.00045 23.9 2.1 43 131-175 10-53 (64)
93 cd08557 PI-PLCc_bacteria_like 43.4 93 0.002 25.7 6.6 19 22-40 43-61 (271)
94 cd01306 PhnM PhnM is believed 43.1 55 0.0012 28.8 5.3 53 131-185 240-293 (325)
95 COG1927 Mtd Coenzyme F420-depe 43.1 2E+02 0.0044 24.1 8.2 84 53-150 12-100 (277)
96 PRK12394 putative metallo-depe 42.8 61 0.0013 28.7 5.6 53 131-183 260-319 (379)
97 cd01295 AdeC Adenine deaminase 42.3 64 0.0014 29.1 5.7 49 136-184 201-254 (422)
98 COG2918 GshA Gamma-glutamylcys 42.1 30 0.00065 32.1 3.4 31 21-60 315-348 (518)
99 TIGR01856 hisJ_fam histidinol 41.9 18 0.0004 30.3 2.0 17 131-147 223-239 (253)
100 PRK00431 RNase III inhibitor; 41.1 1.3E+02 0.0028 23.6 6.7 57 10-75 93-149 (177)
101 PRK15446 phosphonate metabolis 40.2 62 0.0013 28.9 5.2 52 131-185 291-344 (383)
102 PRK06151 N-ethylammeline chlor 40.2 57 0.0012 30.0 5.2 27 10-36 101-128 (488)
103 PF13918 PLDc_3: PLD-like doma 39.7 46 0.00099 26.8 3.9 55 27-91 94-149 (177)
104 PLN02826 dihydroorotate dehydr 39.6 2.9E+02 0.0062 25.2 9.5 90 11-112 203-297 (409)
105 cd08206 RuBisCO_large_I_II_III 39.1 2.3E+02 0.005 25.9 8.7 78 9-104 145-226 (414)
106 cd03174 DRE_TIM_metallolyase D 38.7 2.2E+02 0.0048 23.3 9.7 93 19-117 77-172 (265)
107 PRK06294 coproporphyrinogen II 38.6 2E+02 0.0043 25.5 8.2 57 52-114 134-193 (370)
108 PF14098 SSPI: Small, acid-sol 38.6 1.2E+02 0.0026 20.3 5.7 40 160-199 7-64 (65)
109 PRK13309 ureC urease subunit a 38.3 91 0.002 29.8 6.2 58 129-186 348-424 (572)
110 PRK03892 ribonuclease P protei 38.2 65 0.0014 26.8 4.6 43 131-173 160-203 (216)
111 TIGR00433 bioB biotin syntheta 38.1 1.8E+02 0.0039 24.5 7.6 77 18-106 122-202 (296)
112 PRK08599 coproporphyrinogen II 37.7 1.9E+02 0.0042 25.5 8.0 55 52-112 131-188 (377)
113 COG0402 SsnA Cytosine deaminas 37.6 3E+02 0.0066 24.6 12.2 27 10-38 97-123 (421)
114 cd08209 RLP_DK-MTP-1-P-enolase 37.5 2.3E+02 0.0049 25.8 8.4 78 9-104 137-217 (391)
115 cd06282 PBP1_GntR_like_2 Ligan 37.4 2.1E+02 0.0046 22.8 8.7 74 59-146 13-89 (266)
116 TIGR02318 phosphono_phnM phosp 37.3 94 0.002 27.7 5.9 53 131-185 286-340 (376)
117 PF10901 DUF2690: Protein of u 36.8 21 0.00046 26.1 1.4 15 28-42 28-42 (103)
118 PRK10657 isoaspartyl dipeptida 36.8 86 0.0019 27.5 5.6 52 131-182 268-340 (388)
119 TIGR00193 urease_gam urease, g 36.4 12 0.00026 27.3 0.1 53 8-72 30-82 (102)
120 TIGR03092 SASP_sspI small, aci 36.3 1.3E+02 0.0029 20.1 5.5 41 160-200 6-64 (65)
121 PRK13361 molybdenum cofactor b 35.5 1.5E+02 0.0032 25.8 6.8 75 20-104 105-183 (329)
122 TIGR00010 hydrolase, TatD fami 35.4 1E+02 0.0022 24.9 5.5 50 131-180 185-248 (252)
123 PRK08123 histidinol-phosphatas 35.1 27 0.00058 29.6 2.0 16 131-146 236-251 (270)
124 cd06317 PBP1_ABC_sugar_binding 34.9 2.4E+02 0.0052 22.6 8.8 75 58-145 13-90 (275)
125 PRK12457 2-dehydro-3-deoxyphos 34.4 2.2E+02 0.0048 24.7 7.4 59 5-76 23-88 (281)
126 PRK01060 endonuclease IV; Prov 33.1 2.8E+02 0.0061 23.0 9.2 48 18-77 14-62 (281)
127 PF01993 MTD: methylene-5,6,7, 32.6 34 0.00073 29.1 2.1 84 53-150 11-99 (276)
128 PRK06520 5-methyltetrahydropte 32.4 2.7E+02 0.0059 24.8 8.0 71 12-83 166-242 (368)
129 cd08592 PI-PLCc_gamma Catalyti 32.2 1.5E+02 0.0032 24.9 5.9 80 19-103 32-114 (229)
130 cd08587 PI-PLCXDc_like Catalyt 31.8 1.8E+02 0.004 24.7 6.7 16 24-39 59-74 (288)
131 cd03330 Macro_2 Macro domain, 31.5 1.2E+02 0.0025 22.5 4.8 49 9-67 83-132 (133)
132 COG0362 Gnd 6-phosphogluconate 31.3 4.3E+02 0.0093 24.5 9.5 67 107-175 122-219 (473)
133 PRK07328 histidinol-phosphatas 31.3 34 0.00074 28.9 2.0 17 131-147 215-231 (269)
134 PF00465 Fe-ADH: Iron-containi 31.2 1.5E+02 0.0032 26.0 6.2 50 59-112 37-86 (366)
135 cd08586 PI-PLCc_BcPLC_like Cat 31.0 2.2E+02 0.0047 24.4 7.0 18 23-40 40-57 (279)
136 PRK02955 small acid-soluble sp 31.0 1.7E+02 0.0037 19.8 5.6 41 159-199 8-66 (68)
137 PRK08207 coproporphyrinogen II 30.9 3.3E+02 0.0071 25.4 8.6 56 53-114 301-359 (488)
138 PLN02746 hydroxymethylglutaryl 30.8 3.9E+02 0.0084 23.8 9.4 151 23-182 128-324 (347)
139 cd08627 PI-PLCc_gamma1 Catalyt 30.4 1.5E+02 0.0032 25.0 5.6 81 18-104 31-115 (229)
140 cd08558 PI-PLCc_eukaryota Cata 30.4 1.3E+02 0.0029 25.1 5.3 78 20-103 33-114 (226)
141 PRK05904 coproporphyrinogen II 30.3 3.8E+02 0.0083 23.6 8.8 58 52-114 134-193 (353)
142 cd08597 PI-PLCc_PRIP_metazoa C 30.3 1.6E+02 0.0035 25.2 5.9 78 20-103 33-114 (260)
143 TIGR01212 radical SAM protein, 30.1 3.1E+02 0.0066 23.6 7.8 80 18-108 125-210 (302)
144 PRK09249 coproporphyrinogen II 29.9 3.6E+02 0.0078 24.6 8.6 56 53-114 183-241 (453)
145 TIGR00538 hemN oxygen-independ 29.8 3.7E+02 0.008 24.5 8.7 37 76-113 204-240 (455)
146 cd06312 PBP1_ABC_sugar_binding 29.6 3E+02 0.0066 22.2 7.8 74 58-143 13-88 (271)
147 TIGR03643 conserved hypothetic 29.6 56 0.0012 22.4 2.4 25 158-182 16-41 (72)
148 cd02903 Macro_BAL_like Macro d 29.5 1.7E+02 0.0036 22.0 5.4 50 11-69 87-136 (137)
149 cd08210 RLP_RrRLP Ribulose bis 29.5 4.2E+02 0.009 23.7 8.9 76 10-103 139-217 (364)
150 COG0011 Uncharacterized conser 29.3 2.3E+02 0.0049 20.7 6.2 47 13-70 18-64 (100)
151 PF08683 CAMSAP_CKK: Microtubu 28.9 1.1E+02 0.0023 23.2 4.1 28 172-199 14-45 (123)
152 PRK09248 putative hydrolase; V 28.4 86 0.0019 25.9 4.0 38 131-170 179-219 (246)
153 PRK07945 hypothetical protein; 28.4 88 0.0019 27.5 4.2 43 131-173 278-321 (335)
154 PRK05628 coproporphyrinogen II 28.4 4.1E+02 0.009 23.4 8.6 58 52-114 139-198 (375)
155 PF09999 DUF2240: Uncharacteri 28.1 76 0.0017 24.7 3.3 40 78-117 23-69 (144)
156 PRK05198 2-dehydro-3-deoxyphos 27.8 3.2E+02 0.0069 23.5 7.3 59 5-76 17-82 (264)
157 cd08626 PI-PLCc_beta4 Catalyti 27.7 2E+02 0.0043 24.6 6.0 79 19-104 32-117 (257)
158 COG1099 Predicted metal-depend 27.6 2.7E+02 0.006 23.6 6.6 87 22-117 17-106 (254)
159 cd08213 RuBisCO_large_III Ribu 27.4 4.8E+02 0.011 23.8 8.8 77 10-104 145-224 (412)
160 PRK06740 histidinol-phosphatas 27.2 41 0.0009 29.6 1.9 17 131-147 278-294 (331)
161 PRK05799 coproporphyrinogen II 27.0 4.3E+02 0.0094 23.2 8.5 57 53-114 131-189 (374)
162 PF09650 PHA_gran_rgn: Putativ 27.0 1.5E+02 0.0032 20.8 4.3 29 53-81 8-36 (87)
163 cd08208 RLP_Photo Ribulose bis 27.0 4.9E+02 0.011 24.0 8.7 77 10-104 174-253 (424)
164 PF01910 DUF77: Domain of unkn 26.8 2E+02 0.0044 20.3 5.1 64 11-85 12-75 (92)
165 PRK07379 coproporphyrinogen II 26.8 3.6E+02 0.0078 24.2 7.9 59 52-114 146-205 (400)
166 PRK13241 ureA urease subunit g 26.7 22 0.00047 25.9 0.0 52 8-71 30-81 (100)
167 cd07941 DRE_TIM_LeuA3 Desulfob 26.5 3.9E+02 0.0085 22.5 9.6 90 21-117 83-177 (273)
168 TIGR00539 hemN_rel putative ox 26.5 4.2E+02 0.0092 23.2 8.2 55 53-113 132-189 (360)
169 PRK09856 fructoselysine 3-epim 26.4 2.1E+02 0.0046 23.6 6.1 51 18-81 15-66 (275)
170 cd08205 RuBisCO_IV_RLP Ribulos 26.3 3.7E+02 0.0079 24.0 7.8 80 10-104 144-223 (367)
171 PRK13242 ureA urease subunit g 26.2 22 0.00049 25.9 0.0 52 8-71 30-81 (100)
172 PRK08609 hypothetical protein; 26.2 87 0.0019 29.7 4.0 44 131-174 512-556 (570)
173 PLN03033 2-dehydro-3-deoxyphos 26.1 3.2E+02 0.0068 23.9 6.9 60 5-77 23-89 (290)
174 cd07945 DRE_TIM_CMS Leptospira 25.9 4.2E+02 0.0091 22.6 9.8 88 22-117 80-173 (280)
175 cd08170 GlyDH Glycerol dehydro 25.9 2.6E+02 0.0057 24.3 6.8 49 59-112 37-85 (351)
176 cd06267 PBP1_LacI_sugar_bindin 25.3 3E+02 0.0065 21.5 6.6 54 58-114 12-65 (264)
177 COG1454 EutG Alcohol dehydroge 25.2 2E+02 0.0043 26.0 5.9 54 55-112 41-94 (377)
178 cd08598 PI-PLC1c_yeast Catalyt 25.0 2.3E+02 0.005 23.8 5.8 76 19-102 32-113 (231)
179 PRK13210 putative L-xylulose 5 25.0 1.6E+02 0.0035 24.4 5.1 54 18-81 18-71 (284)
180 cd08171 GlyDH-like2 Glycerol d 24.9 2.8E+02 0.0061 24.2 6.8 40 73-112 47-86 (345)
181 cd00390 Urease_gamma Urease ga 24.7 25 0.00053 25.5 0.0 52 8-71 27-78 (96)
182 PF01470 Peptidase_C15: Pyrogl 24.7 1.2E+02 0.0026 24.6 4.1 59 92-151 47-141 (202)
183 PF12758 DUF3813: Protein of u 24.5 1.3E+02 0.0029 20.0 3.4 28 167-194 25-54 (63)
184 cd08311 Death_p75NR Death doma 24.4 1.4E+02 0.003 20.5 3.8 39 152-198 12-51 (77)
185 cd08179 NADPH_BDH NADPH-depend 24.3 1.8E+02 0.0038 25.8 5.4 50 59-112 40-89 (375)
186 cd01537 PBP1_Repressors_Sugar_ 24.3 3.3E+02 0.0072 21.2 6.7 53 59-114 13-65 (264)
187 cd06311 PBP1_ABC_sugar_binding 24.2 3.8E+02 0.0083 21.6 7.8 75 59-144 13-93 (274)
188 PRK09549 mtnW 2,3-diketo-5-met 23.9 5.4E+02 0.012 23.5 8.4 77 9-103 147-226 (407)
189 PTZ00090 40S ribosomal protein 23.9 4.4E+02 0.0095 22.1 7.6 56 9-86 160-216 (233)
190 cd02905 Macro_GDAP2_like Macro 23.7 2.5E+02 0.0054 21.3 5.5 51 11-70 89-139 (140)
191 cd08623 PI-PLCc_beta1 Catalyti 23.7 2.6E+02 0.0056 23.9 6.0 77 19-103 32-117 (258)
192 PRK05660 HemN family oxidoredu 23.6 4.9E+02 0.011 23.1 8.1 56 53-114 139-197 (378)
193 TIGR03332 salvage_mtnW 2,3-dik 23.6 4.8E+02 0.01 23.8 8.1 76 10-103 153-231 (407)
194 PRK13194 pyrrolidone-carboxyla 23.6 1.7E+02 0.0036 24.1 4.7 59 92-151 47-141 (208)
195 PRK00164 moaA molybdenum cofac 23.6 4.7E+02 0.01 22.4 8.3 77 20-103 109-186 (331)
196 PRK09423 gldA glycerol dehydro 23.4 3E+02 0.0065 24.2 6.7 39 73-112 54-92 (366)
197 cd02904 Macro_H2A_like Macro d 23.2 4E+02 0.0087 21.5 7.7 56 10-74 108-163 (186)
198 PRK05286 dihydroorotate dehydr 23.2 5.1E+02 0.011 22.7 8.7 86 10-111 155-245 (344)
199 cd01307 Met_dep_hydrolase_B Me 23.1 2.9E+02 0.0062 23.8 6.4 51 131-181 236-293 (338)
200 TIGR00587 nfo apurinic endonuc 23.0 2E+02 0.0043 24.2 5.3 27 18-44 13-40 (274)
201 PF01661 Macro: Macro domain; 22.9 1.6E+02 0.0036 20.6 4.2 44 9-62 73-117 (118)
202 PF10985 DUF2805: Protein of u 22.6 89 0.0019 21.5 2.4 25 158-182 15-40 (73)
203 PRK13193 pyrrolidone-carboxyla 22.4 1.8E+02 0.0039 23.9 4.7 59 92-151 47-141 (209)
204 cd04728 ThiG Thiazole synthase 22.3 1.9E+02 0.0041 24.6 4.9 54 89-148 74-135 (248)
205 cd06271 PBP1_AglR_RafR_like Li 22.2 4E+02 0.0087 21.1 8.4 25 58-82 16-40 (268)
206 PRK08446 coproporphyrinogen II 22.1 4.7E+02 0.01 22.9 7.6 56 53-114 130-188 (350)
207 PF02575 YbaB_DNA_bd: YbaB/Ebf 22.1 1.8E+02 0.0039 20.1 4.1 33 32-73 42-74 (93)
208 PF08671 SinI: Anti-repressor 21.8 1.7E+02 0.0036 16.5 3.1 13 164-176 15-27 (30)
209 smart00518 AP2Ec AP endonuclea 21.6 3.3E+02 0.007 22.5 6.3 25 18-42 12-37 (273)
210 PRK00208 thiG thiazole synthas 21.5 2.1E+02 0.0045 24.4 4.9 54 89-147 74-134 (250)
211 TIGR03471 HpnJ hopanoid biosyn 21.4 6.3E+02 0.014 23.0 9.5 88 18-114 286-375 (472)
212 cd08182 HEPD Hydroxyethylphosp 21.3 2.3E+02 0.0049 25.0 5.5 40 73-112 46-85 (367)
213 cd08148 RuBisCO_large Ribulose 21.3 6.1E+02 0.013 22.8 8.5 77 10-104 141-220 (366)
214 cd08630 PI-PLCc_delta3 Catalyt 21.2 2.3E+02 0.0049 24.3 5.2 81 19-105 32-116 (258)
215 cd08599 PI-PLCc_plant Catalyti 21.2 3.2E+02 0.007 22.9 6.0 76 20-104 33-115 (228)
216 TIGR02026 BchE magnesium-proto 21.0 6.7E+02 0.014 23.2 9.5 83 20-114 288-375 (497)
217 cd08185 Fe-ADH1 Iron-containin 20.8 2.2E+02 0.0047 25.2 5.3 50 59-112 42-91 (380)
218 cd08591 PI-PLCc_beta Catalytic 20.7 3.4E+02 0.0074 23.2 6.1 78 20-103 33-116 (257)
219 cd06300 PBP1_ABC_sugar_binding 20.4 3.9E+02 0.0085 21.4 6.5 55 58-113 12-69 (272)
220 cd00166 SAM Sterile alpha moti 20.3 2.2E+02 0.0048 17.4 5.0 43 156-198 17-61 (63)
221 cd08551 Fe-ADH iron-containing 20.2 2.3E+02 0.005 24.9 5.3 50 59-112 39-88 (370)
222 TIGR02109 PQQ_syn_pqqE coenzym 20.1 5.3E+02 0.011 22.4 7.6 77 18-104 94-173 (358)
223 COG4130 Predicted sugar epimer 20.1 5.4E+02 0.012 21.8 7.6 79 19-111 20-103 (272)
224 COG2896 MoaA Molybdenum cofact 20.1 3.7E+02 0.008 23.8 6.4 44 59-103 135-179 (322)
225 COG0620 MetE Methionine syntha 20.0 5.8E+02 0.012 22.5 7.7 52 12-75 154-210 (330)
No 1
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=7.6e-44 Score=314.33 Aligned_cols=184 Identities=22% Similarity=0.291 Sum_probs=166.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHh--hcCceEEEEE
Q psy15247 5 AFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGED--EFQVKSKSIL 82 (203)
Q Consensus 5 ~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~i~~rlI~ 82 (203)
.++ +|+++++++++++++++++|||+|+|+||+|..+... +|++.+++++++++|++++++ ++||.+++|+
T Consensus 96 ~vl-~t~~dl~r~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~------~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~ 168 (362)
T PTZ00124 96 DIF-NDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFK------HNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLC 168 (362)
T ss_pred HHh-CCHHHHHHHHHHHHHHHHHcCCEEEEEEcCchhhhcC------CCCCHHHHHHHHHHHHHHHHhccCCCceEeEEE
Confidence 344 5999999999999999999999999999999765432 379999999999999999988 6899999999
Q ss_pred eecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCC----C--------------------Ccc-----------------
Q psy15247 83 SCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQ----P--------------------ETG----------------- 121 (203)
Q Consensus 83 ~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~E----p--------------------E~~----------------- 121 (203)
|++|+.+++.+.+++++|.++++. ||||||+|+| + |++
T Consensus 169 ~~~R~~~~e~a~e~~~~a~~~~~~-vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~ 247 (362)
T PTZ00124 169 IGDTGHDAAPIKESADFCLKHKAD-FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKV 247 (362)
T ss_pred EecCCCCHHHHHHHHHHHHhccCC-eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCC
Confidence 999999999999999999998765 9999999999 1 531
Q ss_pred ---ccc-c------ccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH
Q psy15247 122 ---PHG-S------VYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS 163 (203)
Q Consensus 122 ---gHG-~------l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~ 163 (203)
||| . +++ || +.|+++|||||||||||++|+|+|++||..+.+
T Consensus 248 ~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~ 327 (362)
T PTZ00124 248 KRIGHGIRVAESQELIDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDYEELYT 327 (362)
T ss_pred CccccccccCCCHHHHHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCCChhHHHHHHHH
Confidence 288 2 222 78 999999999999999999999999999999999
Q ss_pred -cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy15247 164 -WGFTREQFKIINLNAAEASFQPEHEKKELIKLL 196 (203)
Q Consensus 164 -~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~ 196 (203)
+|||.+++.+|++||+++||+++++|++|++++
T Consensus 328 ~~gls~~~l~~l~~nai~asF~~~~~K~~l~~~~ 361 (362)
T PTZ00124 328 HLNFTLADFMKMNEWALEKSFLDKDIKLKIKKLY 361 (362)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 999999999999999999999999999999875
No 2
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=3.5e-43 Score=308.81 Aligned_cols=190 Identities=20% Similarity=0.218 Sum_probs=169.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHHCCceEEEEccCccc-hhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhc--CceEEEEE
Q psy15247 6 FLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHK-LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEF--QVKSKSIL 82 (203)
Q Consensus 6 ~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~i~~rlI~ 82 (203)
.+++++++++++++++++++++|||+|+|+||+|.. +...+ .|++.++++++++++++++++.+ |+.+|+|+
T Consensus 60 ~~l~~~~~~~~~~~~~~~d~~~dgV~Y~Eir~~P~~~~~~~~-----~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~ 134 (345)
T cd01321 60 GLLTYLPIFRDYYRRLLEELYEDNVQYVELRSSFSPLYDLDG-----REYDYEETVQLLEEVVEKFKKTHPDFIGLKIIY 134 (345)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCCEEEEEeecchHHHHccC-----CCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 344599999999999999999999999999999975 33311 37999999999999999998887 79999999
Q ss_pred eecCCCCcccHHHHHHHHHhhC---CCceEEEeCCCCC----C-------------------------Ccc---------
Q psy15247 83 SCATKWPVDTVPDTLRLAQNCT---HYGVVGIDLLSIQ----P-------------------------ETG--------- 121 (203)
Q Consensus 83 ~~~R~~~~e~a~~~~~~a~~~~---~~~vvG~dL~G~E----p-------------------------E~~--------- 121 (203)
|++|+.+++.+.+++++|.+++ ++.||||||+|+| | |.+
T Consensus 135 ~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~ 214 (345)
T cd01321 135 ATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDEN 214 (345)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhH
Confidence 9999999999999999999873 4569999999999 3 332
Q ss_pred ------------ccc-c------ccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCC-C
Q psy15247 122 ------------PHG-S------VYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGR-Y 153 (203)
Q Consensus 122 ------------gHG-~------l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t-~ 153 (203)
||| . |++ || +.|+++|||||||||||++|++ +
T Consensus 215 v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~ 294 (345)
T cd01321 215 LVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKG 294 (345)
T ss_pred HHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCC
Confidence 288 2 222 88 9999999999999999999999 9
Q ss_pred hHHHHHHHHH-cC---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q psy15247 154 LNEDYQLAQS-WG---FTREQFKIINLNAAEASFQPEHEKKELIKLLESEY 200 (203)
Q Consensus 154 Ls~Ey~~~~~-~~---l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~ 200 (203)
|++||+.+.+ +| ||.+++++|++|||++||+++++|++|+++|++.|
T Consensus 295 l~~Ey~~~~~~~g~~~l~~~~l~~l~~nsi~~sF~~~~~K~~l~~~~~~~~ 345 (345)
T cd01321 295 LSHDFYQAFMGLAPADAGLRGLKQLAENSIRYSALSDQEKDEAVAKWEKKW 345 (345)
T ss_pred chHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999 99 99999999999999999999999999999998876
No 3
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=9.8e-43 Score=303.20 Aligned_cols=181 Identities=34% Similarity=0.579 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP 89 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~ 89 (203)
++++++++++++++++++|||+|+|+|++|..+...+ ++++.++++++++++++++++++++.+|+|++..|+.+
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~-----~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~~~ 146 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLG-----GNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRHFP 146 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTT-----CSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTST
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccC-----CCCCHHHHHHHHHhhhhhccccccccccccccccccch
Confidence 9999999999999999999999999999999887652 12899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCceEEEeCCCCC---C-----------------------Ccc-----------------ccc-c
Q psy15247 90 VDTVPDTLRLAQNCTHYGVVGIDLLSIQ---P-----------------------ETG-----------------PHG-S 125 (203)
Q Consensus 90 ~e~a~~~~~~a~~~~~~~vvG~dL~G~E---p-----------------------E~~-----------------gHG-~ 125 (203)
.+.+.++++++.+++++.||||||+|+| | |.+ ||| .
T Consensus 147 ~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~RIgHG~~ 226 (331)
T PF00962_consen 147 DEWAEEIVELASKYPDKGVVGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGADRIGHGVR 226 (331)
T ss_dssp HHHHHHHHHHHHHTTTTTEEEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-SEEEE-GG
T ss_pred HHHHHHHHHHHhhcccceEEEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCcccccchhhhccceeecchhh
Confidence 9999999999999987799999999999 2 332 288 2
Q ss_pred ------ccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHH
Q psy15247 126 ------VYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQ 170 (203)
Q Consensus 126 ------l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~ 170 (203)
|++ || +.|+++|||||||||||++|+|+|++||+.+++ +|||.++
T Consensus 227 ~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~~~~l~~ey~~~~~~~~l~~~~ 306 (331)
T PF00962_consen 227 LIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVFGTTLSDEYYLAAEAFGLSLAD 306 (331)
T ss_dssp GGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHHT-SHHHHHHHHHHHHT--HHH
T ss_pred hhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCccccCCCcHHHHHHHHHHcCCCHHH
Confidence 222 89 999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15247 171 FKIINLNAAEASFQPEHEKKELIKL 195 (203)
Q Consensus 171 l~~l~~nai~~sF~~~~~k~~l~~~ 195 (203)
+++|++||+++||+++++|++|+++
T Consensus 307 l~~l~~nsi~~sf~~~~~K~~ll~~ 331 (331)
T PF00962_consen 307 LKQLARNSIEASFLSEEEKAELLAK 331 (331)
T ss_dssp HHHHHHHHHHCSSS-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcC
Confidence 9999999999999999999999864
No 4
>KOG1097|consensus
Probab=100.00 E-value=7.5e-41 Score=292.98 Aligned_cols=193 Identities=30% Similarity=0.430 Sum_probs=173.0
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHCCceEEEEc-cCccchhhhhhhhccCC-CCHHHHHHHHHHHHHHhHhhcCceEEE
Q psy15247 3 VGAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVR-YMPHKLLGTELYQMLGY-EGLKETVRRVYQGLKRGEDEFQVKSKS 80 (203)
Q Consensus 3 ~~~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr-~~P~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~i~~rl 80 (203)
.++.++.+++++++++|++++++++|||+|+|+| +.|+.+... | ++.++++..+.++++++.++|||.+|+
T Consensus 108 ~l~~ll~~~~~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~-------G~~t~e~~v~~~~~~~e~~~~~fpI~skl 180 (399)
T KOG1097|consen 108 LLHGLLIYAPAFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTAD-------GDITPEDVVAIVIAALEKAKRDFPIKSKL 180 (399)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCceEEEEEccCchhhhcC-------CCCCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 3456677999999999999999999999999999 668888765 5 999999999999999999999999999
Q ss_pred EEeecCCCCcccHHHHHHHHHh---hCCCceEEEeCCCCC----C-----------------------Cc-c--------
Q psy15247 81 ILSCATKWPVDTVPDTLRLAQN---CTHYGVVGIDLLSIQ----P-----------------------ET-G-------- 121 (203)
Q Consensus 81 I~~~~R~~~~e~a~~~~~~a~~---~~~~~vvG~dL~G~E----p-----------------------E~-~-------- 121 (203)
|+|++|+.+++.+.+++..+.+ .++.+||||||+|+| | |. +
T Consensus 181 I~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~ 260 (399)
T KOG1097|consen 181 IMCCIRHMPPEVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNA 260 (399)
T ss_pred EEeeccCCChHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHH
Confidence 9999999999999999988876 247889999999999 3 44 2
Q ss_pred ---------ccc-c------ccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCC-ChHH
Q psy15247 122 ---------PHG-S------VYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGR-YLNE 156 (203)
Q Consensus 122 ---------gHG-~------l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t-~Ls~ 156 (203)
||| . |++ || .+|+++|||++||||||++|++ +||.
T Consensus 261 LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~ 340 (399)
T KOG1097|consen 261 LDLLGTERIGHGYFLTKDPELINLLKSRNIALEICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSDDPGFFGAAPLTL 340 (399)
T ss_pred HHhhCCccccCceeccCCHHHHHHHHhcCceEEEccchhhheeccccccccHHHHHHhCCCCEEEeCCCcccccCccccH
Confidence 299 2 222 78 9999999999999999999986 6999
Q ss_pred HHHHHHH-cC--CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhc
Q psy15247 157 DYQLAQS-WG--FTREQFKIINLNAAEASFQPEHEKKELIKLLESEYSD 202 (203)
Q Consensus 157 Ey~~~~~-~~--l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~~~ 202 (203)
||+.++. .+ +|.++++++++||+++||+++++|+++++.|...|..
T Consensus 341 dfy~A~~~~~~~~~~~~l~~la~nai~~S~l~eeek~~~l~~~~~~~~~ 389 (399)
T KOG1097|consen 341 DFYLAFLGIAPNLDLRELKRLALNAIKYSFLSEEEKNELLERVQKSWDK 389 (399)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHhhcccc
Confidence 9999999 55 9999999999999999999999999999999998853
No 5
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=100.00 E-value=2.6e-40 Score=300.76 Aligned_cols=191 Identities=21% Similarity=0.218 Sum_probs=168.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHCCceEEEEccCcc-chhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhc--CceEEEEE
Q psy15247 6 FLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPH-KLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEF--QVKSKSIL 82 (203)
Q Consensus 6 ~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~i~~rlI~ 82 (203)
.+.+++++++++++++++++++|||+|+|+|++|. .+...| ..++.++++++++++++++++++ ++.+|+|+
T Consensus 187 ~ll~y~p~~~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G-----~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~ 261 (479)
T TIGR01431 187 GLLFYAPSWRDYYYRALEEFYADNVQYLELRSTLFILYELEG-----TSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIY 261 (479)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHcCCEEEEEEecCchHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 34559999999999999999999999999999984 444432 13588999999999999999987 59999999
Q ss_pred eecCCCCcccHHHHHHHHHhhC---CCceEEEeCCCCC----C------------------------Ccc----------
Q psy15247 83 SCATKWPVDTVPDTLRLAQNCT---HYGVVGIDLLSIQ----P------------------------ETG---------- 121 (203)
Q Consensus 83 ~~~R~~~~e~a~~~~~~a~~~~---~~~vvG~dL~G~E----p------------------------E~~---------- 121 (203)
|++|+.+++.+.+.+++|++++ |+.||||||+|+| | |+.
T Consensus 262 ~~~R~~~~~~~~~~~~~a~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl 341 (479)
T TIGR01431 262 SPLRNKDKEELDNYIKVAMELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENL 341 (479)
T ss_pred EccCCCCHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHH
Confidence 9999999999999999998763 5579999999999 3 442
Q ss_pred -----------ccc-cccc---------------------------------cc-HHHHhCCCcEEEcCCCCcCcCC-Ch
Q psy15247 122 -----------PHG-SVYS---------------------------------YN-QKFAKDNANFSLNSDDPTLTGR-YL 154 (203)
Q Consensus 122 -----------gHG-~l~~---------------------------------~p-~~l~~~Gv~vsinTDDp~~f~t-~L 154 (203)
||| .+.+ || +.|+++||||+||||||++|++ +|
T Consensus 342 ~dAIlLg~~RIGHG~~l~~~P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~L 421 (479)
T TIGR01431 342 IDALLLNTTRIGHGFALVKHPLVLQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPL 421 (479)
T ss_pred HHHHHcCCccccCcccccCCHHHHHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCc
Confidence 288 3322 89 9999999999999999999995 89
Q ss_pred HHHHHHHHH-cC---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Q psy15247 155 NEDYQLAQS-WG---FTREQFKIINLNAAEASFQPEHEKKELIKLLESEYS 201 (203)
Q Consensus 155 s~Ey~~~~~-~~---l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~~ 201 (203)
|+||+.+.. ++ ++..++++|++|||++||+++++|++++++|+..|.
T Consensus 422 s~ef~~a~~~~~~~~~~l~~L~~la~NSi~~Sfl~~~eK~~~~~~~~~~W~ 472 (479)
T TIGR01431 422 SHDFYIAFMGLASAKADLRTLKQLALNSIKYSALSEEEKRTALAKWQKQWD 472 (479)
T ss_pred hHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999 87 799999999999999999999999999999999885
No 6
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=3.3e-39 Score=279.42 Aligned_cols=182 Identities=32% Similarity=0.450 Sum_probs=163.9
Q ss_pred cccCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC-ceEEEEEee
Q psy15247 6 FLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ-VKSKSILSC 84 (203)
Q Consensus 6 ~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-i~~rlI~~~ 84 (203)
+++ ++++++++++++++++++|||+|+|+|++|+.+... .+++.++++++++++++++++.+| |.+|+|+|+
T Consensus 37 ~l~-~~~~l~~~~~~~~~~~~~d~V~Y~E~r~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lI~~~ 109 (305)
T cd00443 37 LLQ-KGEALARALKEVIEEFAEDNVQYLELRTTPRLLETE------KGLTKEQYWLLVIEGISEAKQWFPPIKVRLILSV 109 (305)
T ss_pred HhC-CHHHHHHHHHHHHHHHHHcCCEEEEEEcchhhcCcc------cCCCHHHHHHHHHHHHHHHHHHcCCeeEeEEEEE
Confidence 445 999999999999999999999999999999876542 169999999999999999999998 999999999
Q ss_pred cCCCCcc----cHHHHHHHHHhhCCCceEEEeCCCCC-----C------------Ccc----------------------
Q psy15247 85 ATKWPVD----TVPDTLRLAQNCTHYGVVGIDLLSIQ-----P------------ETG---------------------- 121 (203)
Q Consensus 85 ~R~~~~e----~a~~~~~~a~~~~~~~vvG~dL~G~E-----p------------E~~---------------------- 121 (203)
+|+.+++ .+.++++++.++++ .||||||+|+| | +.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~l~~~~~~-~vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~ 188 (305)
T cd00443 110 DRRGPYVQNYLVASEILELAKFLSN-YVVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALL 188 (305)
T ss_pred eCCCChhhhhhhHHHHHHHHHHhcC-CEEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHH
Confidence 9999998 99999999999854 69999999999 2 112
Q ss_pred ------ccc-c------ccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHH
Q psy15247 122 ------PHG-S------VYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQL 160 (203)
Q Consensus 122 ------gHG-~------l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~ 160 (203)
||| . +++ || +.|+++|+||+||||||++|+++|++||..
T Consensus 189 ~~~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~~ 268 (305)
T cd00443 189 LLPDRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYSL 268 (305)
T ss_pred hccceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHHH
Confidence 277 1 111 78 999999999999999999999999999999
Q ss_pred HHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15247 161 AQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKL 195 (203)
Q Consensus 161 ~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~ 195 (203)
++. +++|.+++++|++||+++||+++++|++|++.
T Consensus 269 ~~~~~~l~~~~l~~l~~nsi~~sf~~~~~K~~l~~~ 304 (305)
T cd00443 269 AAKTFGLTFEDLCELNRNSVLSSFAKDEEKKSLLEV 304 (305)
T ss_pred HHHHcCcCHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999 99999999999999999999999999999864
No 7
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=281.20 Aligned_cols=190 Identities=29% Similarity=0.447 Sum_probs=174.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEe
Q psy15247 4 GAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILS 83 (203)
Q Consensus 4 ~~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~ 83 (203)
+..+.+++++++++++++++++++||++|+|+||+|+.++.. |++.+++++++.++++++++++|+..++|+|
T Consensus 73 ~~~v~~~~~~~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~-------~l~~~~~~e~~~~~~~~~~~~~gi~s~li~~ 145 (345)
T COG1816 73 GASVLRTEEDFYRLAYEYLEDAAADNVVYAEIRFDPYLHTKR-------GLSVDTVVEGLIAGFRPAERDFGIHSKLIVC 145 (345)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcCCeEEEEEeCcchhhhc-------cCCHHHHHHHHHHHHHHHhhccCCccceEEE
Confidence 344556999999999999999999999999999999888775 7999999999999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCC---C-----------------------Cccc---------------
Q psy15247 84 CATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQ---P-----------------------ETGP--------------- 122 (203)
Q Consensus 84 ~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~E---p-----------------------E~~g--------------- 122 (203)
..|+.+++.+.++++++.+++.+.++|+||+|+| | |.+|
T Consensus 146 ~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~r 225 (345)
T COG1816 146 LLRHLGFESADEELELALRYRDKLVTGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAER 225 (345)
T ss_pred EEeecCHHHHHHHHHHHhhcccccCccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhh
Confidence 9999999999999999999988778899999999 4 3332
Q ss_pred --cc-------cccc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-c
Q psy15247 123 --HG-------SVYS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-W 164 (203)
Q Consensus 123 --HG-------~l~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~ 164 (203)
|| +|++ || ++|+++||+||||||||++|++++..||..+++ +
T Consensus 226 I~HGi~~~~d~~L~~~l~~~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~l~~Ey~~aa~~~ 305 (345)
T COG1816 226 IGHGIRAIEDPELLYRLAERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQIY 305 (345)
T ss_pred hccccccccCHHHHHHHHHhCCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcCCchHHHHHHHHHHh
Confidence 99 2222 88 999999999999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q psy15247 165 GFTREQFKIINLNAAEASFQPEHEKKELIKLLESEY 200 (203)
Q Consensus 165 ~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~ 200 (203)
+|+.+|+.++++||++.||+++++|++|+.++.+.+
T Consensus 306 ~l~~~dl~~~arnav~~af~~~~~K~~ll~~~~~~~ 341 (345)
T COG1816 306 GLSREDLCELARNAVEAAFISEEEKAALLGKVLKTS 341 (345)
T ss_pred CCCHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999988743
No 8
>PRK09358 adenosine deaminase; Provisional
Probab=100.00 E-value=1.8e-34 Score=252.59 Aligned_cols=187 Identities=28% Similarity=0.476 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCC
Q psy15247 8 RGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATK 87 (203)
Q Consensus 8 ~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~ 87 (203)
..|++++++.++.++++++++||+|+|+|++|..+... |++.++++++++++++++++++|+++++|++++|+
T Consensus 73 ~~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~-------gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~ 145 (340)
T PRK09358 73 LQTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTER-------GLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRH 145 (340)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhc-------CCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCC
Confidence 34999999999999999999999999999999876553 79999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHh-hCCCceEEEeCCCCC---C-----------------------Ccc-----------------cc
Q psy15247 88 WPVDTVPDTLRLAQN-CTHYGVVGIDLLSIQ---P-----------------------ETG-----------------PH 123 (203)
Q Consensus 88 ~~~e~a~~~~~~a~~-~~~~~vvG~dL~G~E---p-----------------------E~~-----------------gH 123 (203)
.+++.+.+.++.+.+ +.++.||||||+|+| | |.. ||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~H 225 (340)
T PRK09358 146 FGEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGH 225 (340)
T ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccch
Confidence 888777887776665 345679999999998 2 321 27
Q ss_pred c-cc------cc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCC
Q psy15247 124 G-SV------YS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFT 167 (203)
Q Consensus 124 G-~l------~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~ 167 (203)
| .+ ++ || +.|+++||||+||||||++++++|++||..+++ +|+|
T Consensus 226 g~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~~~~~~~~l~ 305 (340)
T PRK09358 226 GVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYEALAEAFGLS 305 (340)
T ss_pred hhhhccCHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHhCCC
Confidence 7 21 11 56 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Q psy15247 168 REQFKIINLNAAEASFQPEHEKKELIKLLESEYS 201 (203)
Q Consensus 168 ~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~~ 201 (203)
.+++.+|++||+++||+++++|++|++++++++.
T Consensus 306 ~~el~~l~~nai~~sf~~~~~k~~l~~~~~~~~~ 339 (340)
T PRK09358 306 DEDLAQLARNALEAAFLSEEEKAALLAEVDAWLA 339 (340)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998653
No 9
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=100.00 E-value=6.8e-34 Score=247.49 Aligned_cols=183 Identities=34% Similarity=0.528 Sum_probs=164.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 7 ~~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+..|++++++.++.++++++++||+|+|+|++|..+... |++.++++++++++++++++++|+.+++|++++|
T Consensus 63 ~~~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~-------g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r 135 (324)
T TIGR01430 63 VLRTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNR-------GISPDTVVEAVLDGLDEAERDFGIKSRLILCGMR 135 (324)
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccC-------CCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeC
Confidence 335999999999999999999999999999999876554 7999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhhCCCceEEEeCCCCC---C-----------------------Ccc-----------------cc
Q psy15247 87 KWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQ---P-----------------------ETG-----------------PH 123 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~E---p-----------------------E~~-----------------gH 123 (203)
+.+++.+.+.++++.+++.+.||||||+|+| | |.+ ||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~H 215 (324)
T TIGR01430 136 HKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGH 215 (324)
T ss_pred CCCHHHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcch
Confidence 9889899999999998876679999999988 2 321 27
Q ss_pred c-cc------cc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCC
Q psy15247 124 G-SV------YS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFT 167 (203)
Q Consensus 124 G-~l------~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~ 167 (203)
| .+ ++ || +.|+++||+|+||||||++++++|++||..+.+ +|+|
T Consensus 216 g~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~~~l~ 295 (324)
T TIGR01430 216 GVRALEDPELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLT 295 (324)
T ss_pred hhhhccCHHHHHHHHHcCceEEECCcccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCC
Confidence 7 11 11 57 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy15247 168 REQFKIINLNAAEASFQPEHEKKELIKLL 196 (203)
Q Consensus 168 ~~~l~~l~~nai~~sF~~~~~k~~l~~~~ 196 (203)
.++++++++||++++|+++++|++|++++
T Consensus 296 ~~el~~~~~na~~~~f~~~~~k~~l~~~~ 324 (324)
T TIGR01430 296 EEELKQLARNALEGSFLSDDEKKELLAKL 324 (324)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Confidence 99999999999999999999999998864
No 10
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.97 E-value=1.1e-30 Score=227.09 Aligned_cols=181 Identities=35% Similarity=0.596 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCC
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKW 88 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~ 88 (203)
.+++++++.++.++++++++||.|+|+|++|...... |++.+++++++++++.++++++|+.+++|+++.|..
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~-------~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~ 138 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRR-------GLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHL 138 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccC-------CCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 4999999999999999999999999999999765543 799999999999999999999999999999999998
Q ss_pred CcccHHHHHHHHHhhCCCceEEEeCCCCC---C-----------------------Ccc-----------------ccc-
Q psy15247 89 PVDTVPDTLRLAQNCTHYGVVGIDLLSIQ---P-----------------------ETG-----------------PHG- 124 (203)
Q Consensus 89 ~~e~a~~~~~~a~~~~~~~vvG~dL~G~E---p-----------------------E~~-----------------gHG- 124 (203)
+++.+.+.++++.+++.+.++|+|++|+| + |.+ +||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~ 218 (325)
T cd01320 139 SPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGI 218 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhh
Confidence 88889999999998876779999999987 1 211 176
Q ss_pred cc------cc---------------------------cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHH
Q psy15247 125 SV------YS---------------------------YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTRE 169 (203)
Q Consensus 125 ~l------~~---------------------------~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~ 169 (203)
.+ ++ || +.|+++||+|+||||||+++++++.+||..+.+ ++++..
T Consensus 219 ~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~ 298 (325)
T cd01320 219 RAIEDPELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEE 298 (325)
T ss_pred ccCccHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHH
Confidence 11 11 56 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy15247 170 QFKIINLNAAEASFQPEHEKKELIKLL 196 (203)
Q Consensus 170 ~l~~l~~nai~~sF~~~~~k~~l~~~~ 196 (203)
+++++++||+++||+++++|+++++.+
T Consensus 299 el~~~~~na~~~~f~~~~~k~~~~~~~ 325 (325)
T cd01320 299 ELKKLARNAVEASFLSEEEKAELLKRI 325 (325)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhC
Confidence 999999999999999999999998753
No 11
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=99.83 E-value=2.9e-19 Score=162.81 Aligned_cols=168 Identities=19% Similarity=0.213 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCC
Q psy15247 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKW 88 (203)
Q Consensus 12 ~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~ 88 (203)
+-|.++++++++++-...-.++|.|++-. |-+.+|+- - +.++-..+| -.+||++.+.|-.
T Consensus 162 ~y~Ael~k~v~~~le~~kyq~~E~rlsiy------------G~~~~Ew~-~----lA~W~~~~~l~s~n~rW~iqipR~y 224 (496)
T cd01319 162 RYLAEITKEVFSDLEESKYQHAEYRLSIY------------GRSKDEWD-K----LASWVVDNDLFSPNVRWLIQIPRLY 224 (496)
T ss_pred HhHHHHHHHHHHHHHhccceeEEEEEEEe------------CCCHHHHH-H----HHHHHHHcCCCCCCceEEEecchhH
Confidence 45788999999999999999999999643 34555432 2 333333333 5689999999954
Q ss_pred C-------cccHHHHHHHH-------HhhCC---------CceEEEeCCCCC-------------C--------------
Q psy15247 89 P-------VDTVPDTLRLA-------QNCTH---------YGVVGIDLLSIQ-------------P-------------- 118 (203)
Q Consensus 89 ~-------~e~a~~~~~~a-------~~~~~---------~~vvG~dL~G~E-------------p-------------- 118 (203)
+ ...-.++++.. ..++. ..|+|||++.+| |
T Consensus 225 ~~~~~~g~~~~Fq~~L~nIF~PLfeat~~P~~~p~l~~fL~~v~gfd~VddEs~~~~~~~~~~p~P~~w~~~~nPpy~Yy 304 (496)
T cd01319 225 DVYKKSGIVNSFQEMLENIFEPLFEATKDPSSHPELHVFLQQVIGFDSVDDESKSERRFTRKFPKPEEWTSEENPPYSYY 304 (496)
T ss_pred HHHhhcCCcCCHHHHHHHHHHHHHHHhcCcccCHHHHHHHHhCCceEEEcCCCccccCCCcCCCChhcCCCCCCCCceee
Confidence 3 22344444432 22211 249999999998 1
Q ss_pred ------------------------------Ccc---------------ccc-cccc------------------------
Q psy15247 119 ------------------------------ETG---------------PHG-SVYS------------------------ 128 (203)
Q Consensus 119 ------------------------------E~~---------------gHG-~l~~------------------------ 128 (203)
|++ ||| .+.+
T Consensus 305 ~YY~yaNi~~LN~~R~~rglntf~~r~HaGE~g~~~~l~~alL~adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~ 384 (496)
T cd01319 305 LYYMYANITTLNSFRKARGFNTFVLRPHCGEAGDIDHLASAFLLAHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNS 384 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcceeeecCCCCChHHHHHHhhcCcccccccccCCCHHHHHHHHHcCCeEEEecCccHh
Confidence 332 288 2211
Q ss_pred -------cc-HHHHhCCCcEEEcCCCCcCcCCC---hHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy15247 129 -------YN-QKFAKDNANFSLNSDDPTLTGRY---LNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKLL 196 (203)
Q Consensus 129 -------~p-~~l~~~Gv~vsinTDDp~~f~t~---Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~ 196 (203)
|| +.|+++|+|||||||||++|+++ |++||..+++ +++|.+++++|++||+++||+++++|+.|+.++
T Consensus 385 l~~~~~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY~~a~~~~~Ls~~Dl~eLarNSV~~Sf~~~~~K~~~l~~~ 464 (496)
T cd01319 385 LFLSYEKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSTCDMCELARNSVLQSGFEHSIKRHWLGPN 464 (496)
T ss_pred hhcCcccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 78 99999999999999999999975 9999999999 999999999999999999999999999999876
No 12
>PLN03055 AMP deaminase; Provisional
Probab=99.81 E-value=1.1e-18 Score=161.21 Aligned_cols=168 Identities=21% Similarity=0.196 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCC
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATK 87 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~ 87 (203)
-+-|.++++++++++-.....++|.|++-. |-+.+|+-. +.++-..++ -.+||++.+.|-
T Consensus 251 G~YlAel~k~v~~~le~skyQ~~E~rlsiY------------G~~~~EW~k-----LA~W~~~~~l~s~n~rW~IqiPRl 313 (602)
T PLN03055 251 GRFLAELTKEVFSDLEASKYQMAEYRISIY------------GRKQSEWDQ-----LASWIVNNRLYSENVVWLIQLPRL 313 (602)
T ss_pred hhhHHHHHHHHHHHHHhccceeEEEEEEEe------------CCCHHHHHH-----HHHHHHHcCcCCCCceEEEecCcc
Confidence 356788999999999999999999999643 334444432 223323333 568999999983
Q ss_pred CC-------cccHHHHHHHH-------HhhCC---------CceEEEeCCCCC--C------------------------
Q psy15247 88 WP-------VDTVPDTLRLA-------QNCTH---------YGVVGIDLLSIQ--P------------------------ 118 (203)
Q Consensus 88 ~~-------~e~a~~~~~~a-------~~~~~---------~~vvG~dL~G~E--p------------------------ 118 (203)
.+ ...-.++++.. ..++. ..|+|||.+.+| |
T Consensus 314 y~~~~~~g~v~~Fqd~L~NIF~PLFeatl~P~~hp~L~~fL~~v~gfD~VddEs~~e~~~~~~~~~P~~W~~~~NPpy~Y 393 (602)
T PLN03055 314 YNVYKEMGIVQSFQQILDNIFKPLFEVTVDPSSHPQLHVFLKMVVGFDMVDDESKPERRPTKHMQTPEQWDIPFNPAYSY 393 (602)
T ss_pred hhhhhcCCCcCCHHHHHHHHHHHHHHHHcCcccCHHHHHHHHhcCCceeecCCCccccccccCCCChhhCcCCCCCCcch
Confidence 32 22334444432 11211 139999999999 2
Q ss_pred -------------------------------Cccc---------------cc-cccc-----------------------
Q psy15247 119 -------------------------------ETGP---------------HG-SVYS----------------------- 128 (203)
Q Consensus 119 -------------------------------E~~g---------------HG-~l~~----------------------- 128 (203)
|+++ || .+.+
T Consensus 394 y~YY~yaNl~~LN~lR~~rglnT~~~rpHAGEag~~~~v~~alL~a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~ 473 (602)
T PLN03055 394 WAYYVYANLYTLNKLRESKGLNTIKFRPHAGEAGDIDHLAAAFLLAHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNN 473 (602)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCccccCCCCCCHHHHHHHhhCCceecCccccCCCHHHHHHHHHcCCeEEEccCcch
Confidence 3322 88 2222
Q ss_pred --------cc-HHHHhCCCcEEEcCCCCcCcCCC---hHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15247 129 --------YN-QKFAKDNANFSLNSDDPTLTGRY---LNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKL 195 (203)
Q Consensus 129 --------~p-~~l~~~Gv~vsinTDDp~~f~t~---Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~ 195 (203)
|| +.|+++|++||||||||++|+++ |++||..+++ ++||..+|.+|++||+++||+++++|++|+..
T Consensus 474 ~l~~~y~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY~~aa~~~~LS~~DL~eLarNSV~~Sf~~~~~K~~~lg~ 553 (602)
T PLN03055 474 SLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQVWKLSSCDLCEIARNSVLQSGFPHASKKHWVGD 553 (602)
T ss_pred hhccchhhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 78 99999999999999999999975 9999999999 99999999999999999999999999999875
No 13
>PLN02768 AMP deaminase
Probab=99.79 E-value=3.9e-18 Score=160.54 Aligned_cols=168 Identities=21% Similarity=0.185 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCC
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATK 87 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~ 87 (203)
-+-|.++++++++++-.....++|+|++-+ |-+.+||-. +.++-..++ -.+||++.+.|-
T Consensus 484 GrYfAELiK~V~~dlE~sKyQ~aE~RlsIY------------Gr~~~EW~k-----LA~W~v~~~l~S~nvRWlIQIPRl 546 (835)
T PLN02768 484 GRFLAELTKQVFSDLEASKYQMAEYRISIY------------GRKQSEWDQ-----LASWIVNNELYSENVVWLIQLPRL 546 (835)
T ss_pred hhhHHHHHHHHHHHHHhccceeeEEEEEec------------CCCHHHHHH-----HHHHHHHcCCCCCCceEEEEcccc
Confidence 345788999999999999999999999832 345554432 233333333 568999999994
Q ss_pred CC-------cccHHHHHHHH-------HhhCC---------CceEEEeCCCCC--C------------------------
Q psy15247 88 WP-------VDTVPDTLRLA-------QNCTH---------YGVVGIDLLSIQ--P------------------------ 118 (203)
Q Consensus 88 ~~-------~e~a~~~~~~a-------~~~~~---------~~vvG~dL~G~E--p------------------------ 118 (203)
.+ ...-.++++.. ..++. ..|+|||.+.+| |
T Consensus 547 Y~i~k~~g~v~nFqd~L~NIF~PLFeATl~P~~hp~L~~FL~~V~GFDsVdDESk~e~~~~~~~p~P~~W~~~~NPPyaY 626 (835)
T PLN02768 547 YNVYKEMGIVTSFQNILDNIFIPLFEVTVDPDSHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPAQWTNVFNPAFSY 626 (835)
T ss_pred hhhhhcCCccCCHHHHHHHHHHHHHHHhcCCccCHHHHHHHHhcCCceeecCCCccccccCcCCCChhhCcCCCCCChhh
Confidence 32 12234444432 11211 249999999988 1
Q ss_pred -------------------------------Cccc---------------cc-cccc-----------------------
Q psy15247 119 -------------------------------ETGP---------------HG-SVYS----------------------- 128 (203)
Q Consensus 119 -------------------------------E~~g---------------HG-~l~~----------------------- 128 (203)
|+++ || .+.+
T Consensus 627 YlYYmyANi~~LN~lR~~rGlNTf~fRPHAGEag~~e~I~~AlL~AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~ 706 (835)
T PLN02768 627 YVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTCHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN 706 (835)
T ss_pred hHHHHHHHHHHHHHHHHHCCCCccccccccCCCCCHHHHHHHHhcCCccCCccccCcCHHHHHHHHHcCCeEEECCCcch
Confidence 3322 88 2211
Q ss_pred --------cc-HHHHhCCCcEEEcCCCCcCcCCC---hHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15247 129 --------YN-QKFAKDNANFSLNSDDPTLTGRY---LNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKL 195 (203)
Q Consensus 129 --------~p-~~l~~~Gv~vsinTDDp~~f~t~---Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~ 195 (203)
|| +.|+++|++||||||||++|+++ |++||..+++ ++||.+|+.+|++||+++||++++.|++|+..
T Consensus 707 ~l~~~y~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEYsvAak~~~LS~~DL~ELarNSV~aSff~~~~K~~wLg~ 786 (835)
T PLN02768 707 SLFLDYHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGK 786 (835)
T ss_pred hhhcchhhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 78 99999999999999999999975 9999999999 99999999999999999999999999999875
No 14
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=99.78 E-value=1.1e-17 Score=154.90 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=64.4
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcCC---ChHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTGR---YLNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKL 195 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~t---~Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~ 195 (203)
|| +.|+++|++||||||||++|++ +|++||..+++ ++||.+++.+|++||+++||+++++|++|+..
T Consensus 504 HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~~~~Ls~~Dl~eLarNSV~~S~~~~~~K~~~lg~ 575 (611)
T TIGR01429 504 NPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQVWKLSTCDMCELARNSVLQSGFEHQVKQHWLGP 575 (611)
T ss_pred ChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Confidence 78 9999999999999999999996 59999999999 99999999999999999999999999999874
No 15
>PTZ00310 AMP deaminase; Provisional
Probab=99.70 E-value=5.5e-16 Score=152.93 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=65.9
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcCCC---hHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTGRY---LNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKLL 196 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~t~---Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~ 196 (203)
|| +.|+++|++||||||||++|+++ |++||..+++ +|||.+|+.+|++||+++||+++++|++|+..+
T Consensus 546 HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaaq~~gLS~~DL~eLarNSV~aSf~~~e~K~~lLg~l 618 (1453)
T PTZ00310 546 HPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAMKLFSLSPLDTTELARNSVLNSSFPPEVKQQWLGER 618 (1453)
T ss_pred CcHHHHHHCCCEEEECCCCccccCCCCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 78 99999999999999999999995 9999999999 999999999999999999999999999999876
No 16
>PTZ00310 AMP deaminase; Provisional
Probab=99.68 E-value=1.3e-15 Score=150.34 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCC
Q psy15247 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKW 88 (203)
Q Consensus 12 ~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~ 88 (203)
+-|.++++++++++-++.-.++|.|.|-+ |.+.+||- - +.++--+++ -.+||++.+.|-.
T Consensus 947 ~YfAel~K~v~~~le~skyq~aE~RlSIY------------G~~~~EW~-k----LA~W~~~~~l~S~nvrW~IQiPRlY 1009 (1453)
T PTZ00310 947 RYFAELIKDVFEQYSRDRFTYAENRLSIY------------GINVKEWD-D----LAHWFDTHGMASKHNKWMIQVPRVY 1009 (1453)
T ss_pred HhHHHHHHHHHHHHHhccceeeeeeEeee------------CCCHHHHH-H----HHHHHHHcCCCCCCceEEEecchhh
Confidence 45788999999999999999999999963 34555543 2 333333344 5689999999843
Q ss_pred C-------cccHHHHHHHH-------HhhCC---------CceEEEeCCCCC-----------C----------------
Q psy15247 89 P-------VDTVPDTLRLA-------QNCTH---------YGVVGIDLLSIQ-----------P---------------- 118 (203)
Q Consensus 89 ~-------~e~a~~~~~~a-------~~~~~---------~~vvG~dL~G~E-----------p---------------- 118 (203)
+ ...-.++++.. ..++. ..|+|||.+.+| |
T Consensus 1010 ~~~k~~g~v~~F~~~L~nIF~PLFeat~~P~~hp~L~~FL~~v~gfDsVddEsk~e~~~~~~~P~~W~~~~NPpy~Yy~Y 1089 (1453)
T PTZ00310 1010 KVFRAQNVIGSFGQYLDNIFQPLWEASLHPSKHPKFHYFLNHVSGFDSVDNEATIDLPFTDVSPWAWTSVENPPYNYYLY 1089 (1453)
T ss_pred HHHHhcCCcCCHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhCcceEEcCCcccccccCCCChhhccCCCCCchhHhHH
Confidence 2 23334444432 12211 159999999999 1
Q ss_pred ----------------------------Cccc---------------cc-cccc--------------------------
Q psy15247 119 ----------------------------ETGP---------------HG-SVYS-------------------------- 128 (203)
Q Consensus 119 ----------------------------E~~g---------------HG-~l~~-------------------------- 128 (203)
|+++ || .+.+
T Consensus 1090 Y~yaNi~~LN~~R~~rglnTf~~rpHAGEag~~~hI~~AlL~a~RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~l~ 1169 (1453)
T PTZ00310 1090 YLYANIRTLNEFRASRGFSTFALRPHCGESGSMDHLYGAFLCANSICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNALF 1169 (1453)
T ss_pred HHHHHHHHHHHHHHHCCCCCcCccccCCCCCCHHHHHHHHhCCccccchhhhCcCHHHHHHHHHcCCeEEECCCchHhhh
Confidence 3332 88 2211
Q ss_pred -----cc-HHHHhCCCcEEEcCCCCcCcCCC---hHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy15247 129 -----YN-QKFAKDNANFSLNSDDPTLTGRY---LNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIK 194 (203)
Q Consensus 129 -----~p-~~l~~~Gv~vsinTDDp~~f~t~---Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~ 194 (203)
|| ++|+++|++||||||||++|+++ |++||..+++ ++||.+|+.+|++||+..|=.+...|+.|+.
T Consensus 1170 ~sy~~hP~~~f~~~Gl~VSLnTDDPl~f~tT~EpL~eEYsiaa~~~~LS~~Dl~elarNSV~~SGf~~~~K~~wlG 1245 (1453)
T PTZ00310 1170 LAFLENPFPVFFHRGLNVSLSTDDPLMFHQTQEPLIEEYSIAARVWGLSLNDLCEIARNSVLQSGFDAAFKRNAIG 1245 (1453)
T ss_pred hchhhCcHHHHHHCCCEEEECCCCccccCCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence 78 99999999999999999999998 9999999999 9999999999999999999999999999986
No 17
>KOG1096|consensus
Probab=99.05 E-value=1.3e-09 Score=101.22 Aligned_cols=167 Identities=18% Similarity=0.171 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhh---cCceEEEEEeecCC
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDE---FQVKSKSILSCATK 87 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~rlI~~~~R~ 87 (203)
-+-|.+++.+++.++.+.--.++|+|.+-+.. +.+||- -+..+--. +-..+||++-+.|-
T Consensus 420 GeYlAei~Kev~~dleeSKYQ~ae~rlsiygr------------s~~EW~-----klA~W~v~~~v~S~NvRWlIQipRi 482 (768)
T KOG1096|consen 420 GEYLAEILKEVLSDLEESKYQLAEPRLSIYGR------------SRDEWD-----KLASWLVDNKVFSPNVRWLIQIPRL 482 (768)
T ss_pred hhhHHHHHHHHHhhHHHhhhhhcceeEEEeee------------CHHHHH-----HHHHHHHHccccCCCeeEEEecchH
Confidence 35688999999999999999999999986543 444432 22333222 33668999999884
Q ss_pred CCc-------ccHHHHHHHH-------HhhC---C------CceEEEeCCCCC--C------------------------
Q psy15247 88 WPV-------DTVPDTLRLA-------QNCT---H------YGVVGIDLLSIQ--P------------------------ 118 (203)
Q Consensus 88 ~~~-------e~a~~~~~~a-------~~~~---~------~~vvG~dL~G~E--p------------------------ 118 (203)
.+. ..-.++++.. ...+ | ..|+|||++-+| |
T Consensus 483 ydvy~~~g~v~nFqe~L~nIF~PLFeat~~p~~hp~Lh~FL~~V~gfDsVdDesk~~~~~Ft~~sp~P~~Wt~~~NPpys 562 (768)
T KOG1096|consen 483 YDVYRKKGIVKNFQEMLDNIFLPLFEATKDPSSHPELHVFLQQVSGFDSVDDESKYEWKNFTRKSPKPKEWTAEDNPPYS 562 (768)
T ss_pred hHHHHhcCchhhHHHHHHHHhhhhhhcccCCCcchHHHHHHHHhcCcccccccccccccccccCCCCchhccccCCCchh
Confidence 432 2344455542 1111 1 249999999988 2
Q ss_pred --------------------------------Cccc---------------cccccc-----------------------
Q psy15247 119 --------------------------------ETGP---------------HGSVYS----------------------- 128 (203)
Q Consensus 119 --------------------------------E~~g---------------HG~l~~----------------------- 128 (203)
|+|. ||-|++
T Consensus 563 yYlYY~YaNl~~LN~lR~~rg~nTf~LRphCgeag~~~hLvsafLla~gIshg~Llrk~PvLQYLyYL~QIpIamSPLSn 642 (768)
T KOG1096|consen 563 YYLYYMYANLAKLNHLRRARGQNTFTLRPHCGEAGDIEHLVSAFLLAHGISHGILLRKVPVLQYLYYLAQIPIAMSPLSN 642 (768)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCceEEecCCCCCcCCHHHHHHHHHHhccccchhhhccchHHHHHHHHHhcchhhccccc
Confidence 2221 552222
Q ss_pred ---------cc-HHHHhCCCcEEEcCCCCcCcC---CChHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy15247 129 ---------YN-QKFAKDNANFSLNSDDPTLTG---RYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIK 194 (203)
Q Consensus 129 ---------~p-~~l~~~Gv~vsinTDDp~~f~---t~Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~ 194 (203)
-| ..|+++|+.||++||||.-|+ -.|-+||..|++ +-|+-.||.+|+|||+-.|=.+.+.|..|+.
T Consensus 643 nslfl~Y~kNPf~~~f~~GL~VSLSTddpLqf~yTkEPLiEEYSIAAqiykLss~DmCELaRNSVlqSGfs~~~K~hWlG 722 (768)
T KOG1096|consen 643 NSLFLSYHKNPFPEYFKRGLNVSLSTDDPLQFHYTKEPLIEEYSIAAQVYKLSSCDMCELARNSVLQSGFSHQLKSHWLG 722 (768)
T ss_pred cccccccccCchHHHHHhhceeeeccCCchhhhcccchHHHHHHHHHHHHhcccccHHHHHhhhhhhhcchHHhhhhhcc
Confidence 36 999999999999999999997 489999999999 9999999999999999999999999999874
No 18
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.00 E-value=1.6e-08 Score=89.37 Aligned_cols=163 Identities=15% Similarity=0.036 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP 89 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~ 89 (203)
+++++++.++..++++.+.||.|+|++.. . |++.++.. .++++++++..+.|+.+.++.+..+..+
T Consensus 89 ~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~------~-------g~~~~~~~-~~~~a~~~~~~~~~i~~~~~~~~~~~~~ 154 (377)
T TIGR01224 89 SEEELLKLALFRLKSMLRSGTTTAEVKSG------Y-------GLDLETEL-KMLRAAKALHEEQPVDVVTTFLGAHAVP 154 (377)
T ss_pred CHHHHHHHHHHHHHHHHHCCceEEEeccc------C-------CCCHHHHH-HHHHHHHHHHhhCCCceEeeeeecccCC
Confidence 88999999999999999999999998832 1 46766665 4889999988888999888854333333
Q ss_pred cc---c----HHHHHHHHHh-h-CCCceEEEeCCCCC-C-------------------------Ccc-----------c-
Q psy15247 90 VD---T----VPDTLRLAQN-C-THYGVVGIDLLSIQ-P-------------------------ETG-----------P- 122 (203)
Q Consensus 90 ~e---~----a~~~~~~a~~-~-~~~~vvG~dL~G~E-p-------------------------E~~-----------g- 122 (203)
.+ . ..+..+.+++ + ....|.|+++.|.+ + |.. |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~ 234 (377)
T TIGR01224 155 PEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGA 234 (377)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCC
Confidence 21 1 1122222222 2 12358899988876 2 110 1
Q ss_pred ----cc--------cccc--------------------cc-HHHHhCCCcEEEcCCC-CcCcC-CChHHHHHHHHH-cCC
Q psy15247 123 ----HG--------SVYS--------------------YN-QKFAKDNANFSLNSDD-PTLTG-RYLNEDYQLAQS-WGF 166 (203)
Q Consensus 123 ----HG--------~l~~--------------------~p-~~l~~~Gv~vsinTDD-p~~f~-t~Ls~Ey~~~~~-~~l 166 (203)
|| +.+. +| +.++++||+|+++||. |+... .++..++..+.. .++
T Consensus 235 ~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~l 314 (377)
T TIGR01224 235 VSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPGSSPTLSMQLIMSLACRLMKM 314 (377)
T ss_pred CccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCccHHHHHHCCCCEEEECCCCCCCChhHHHHHHHHHHHHhcCC
Confidence 66 1111 34 8899999999999995 42433 356666666666 899
Q ss_pred CHHHHHH-HHHHHHHHcCCCH
Q psy15247 167 TREQFKI-INLNAAEASFQPE 186 (203)
Q Consensus 167 ~~~~l~~-l~~nai~~sF~~~ 186 (203)
+..++.. .+.|+.+..++++
T Consensus 315 s~~eal~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 315 TPEEALHAATVNAAYALGLGE 335 (377)
T ss_pred CHHHHHHHHHHHHHHHhCCCC
Confidence 9988666 7789998888754
No 19
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=98.76 E-value=5.2e-07 Score=79.50 Aligned_cols=160 Identities=15% Similarity=0.031 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeec-CCC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCA-TKW 88 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~-R~~ 88 (203)
+++++++.+++.++++.+.||.|+|.+.. . +++.+..++ ++++++++..+.++. ++.++. |+.
T Consensus 86 ~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~------~-------~~~~~~~~~-~~~a~~~~~~~~~~~--l~~~~~~~~~ 149 (371)
T cd01296 86 SEDELFASALRRLARMLRHGTTTVEVKSG------Y-------GLDLETELK-MLRVIRRLKEEGPVD--LVSTFLGAHA 149 (371)
T ss_pred CHHHHHHHHHHHHHHHHHCCceEEEeccc------C-------CCCHHHHHH-HHHHHHHHHhhCCCc--eEeeeeeccc
Confidence 78999999999999999999999998721 1 366666655 778888887765443 555555 554
Q ss_pred CcccH-------HHHHHHHHh-h-CCCceEEEeCCCCC---C-----------------------Ccc------------
Q psy15247 89 PVDTV-------PDTLRLAQN-C-THYGVVGIDLLSIQ---P-----------------------ETG------------ 121 (203)
Q Consensus 89 ~~e~a-------~~~~~~a~~-~-~~~~vvG~dL~G~E---p-----------------------E~~------------ 121 (203)
.++.. ....+...+ + ....+.|+|+.|.+ + |..
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g 229 (371)
T cd01296 150 VPPEYKGREEYIDLVIEEVLPAVAEENLADFCDVFCEKGAFSLEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELG 229 (371)
T ss_pred CCcccCChHHHHHHHHHHHHHHHHHhCCCCEEEEeecCCccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcC
Confidence 44211 111222222 1 13558888888765 1 110
Q ss_pred ----ccc-----cccc-----------------------cc-HHHHhCCCcEEEcCCC-CcCcCC-ChHHHHHHHHH-cC
Q psy15247 122 ----PHG-----SVYS-----------------------YN-QKFAKDNANFSLNSDD-PTLTGR-YLNEDYQLAQS-WG 165 (203)
Q Consensus 122 ----gHG-----~l~~-----------------------~p-~~l~~~Gv~vsinTDD-p~~f~t-~Ls~Ey~~~~~-~~ 165 (203)
+|| +.++ +| +.++++|++|+++||. |..+.. ++..++..+.. .+
T Consensus 230 ~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD~~p~~~~~~~l~~~~~~~~~~~~ 309 (371)
T cd01296 230 ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSSPTSSMPLVMHLACRLMR 309 (371)
T ss_pred CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCCCCHHHHHHCCCcEEEecCCCCCCChHHHHHHHHHHHHHhcC
Confidence 165 1111 34 8899999999999995 655443 47788888888 89
Q ss_pred CCHHHHH-HHHHHHHHHcCCC
Q psy15247 166 FTREQFK-IINLNAAEASFQP 185 (203)
Q Consensus 166 l~~~~l~-~l~~nai~~sF~~ 185 (203)
++.+++. ..+.|+.+....+
T Consensus 310 l~~~~al~~aT~~~A~~lg~~ 330 (371)
T cd01296 310 MTPEEALTAATINAAAALGLG 330 (371)
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 9998866 5678998887765
No 20
>PRK09230 cytosine deaminase; Provisional
Probab=97.99 E-value=0.00032 Score=63.60 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCC-
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATK- 87 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~- 87 (203)
.|+++++..++..++++.+.|+.|+|.+++|.. . . ...+++++++.++++...+++ |.++.+.
T Consensus 95 ~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~--~--------~---~~~~~a~~~~~~~~~~~~~~~---i~a~~~~~ 158 (426)
T PRK09230 95 LTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSD--P--------T---LTALKAMLEVKEEVAPWVDLQ---IVAFPQEG 158 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcccEEeccccCC--c--------c---hhHHHHHHHHHHHhhCcceEE---EEeccCcc
Confidence 389999999999999999999999999998632 1 1 146778888887777665555 3344443
Q ss_pred -CCcccHHHHHHHHHhhCCCceEEEeCCC
Q psy15247 88 -WPVDTVPDTLRLAQNCTHYGVVGIDLLS 115 (203)
Q Consensus 88 -~~~e~a~~~~~~a~~~~~~~vvG~dL~G 115 (203)
.+.+...+.++.+.+...+.+.|++.+.
T Consensus 159 ~~~~~~~~~~l~~a~~~~~~~vg~~p~~~ 187 (426)
T PRK09230 159 ILSYPNGEALLEEALRLGADVVGAIPHFE 187 (426)
T ss_pred ccCCccHHHHHHHHHHcCCCEEeCCCCcc
Confidence 3333456777777777544355555444
No 21
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=97.64 E-value=0.0024 Score=52.31 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP 89 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~ 89 (203)
++++++..+...++++.+.||.++..+.++.... .+ .+.++.+.+..++.. |+...++.++.+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (275)
T cd01292 29 SPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPT----------TT-KAAIEAVAEAARASA---GIRVVLGLGIPGVPA 94 (275)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEEeeEeecCcc----------cc-chHHHHHHHHHHHhc---CeeeEEeccCCCCcc
Confidence 7899999999999999999999999887654321 11 233444444443222 666666666665433
Q ss_pred cc--c-HHHHHHHHHhhCCCceEEEeCCCCC------C------------------------Cc--------------cc
Q psy15247 90 VD--T-VPDTLRLAQNCTHYGVVGIDLLSIQ------P------------------------ET--------------GP 122 (203)
Q Consensus 90 ~e--~-a~~~~~~a~~~~~~~vvG~dL~G~E------p------------------------E~--------------~g 122 (203)
+. . .....+........+++|+++.+.+ + +. ++
T Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~ 174 (275)
T cd01292 95 AVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGG 174 (275)
T ss_pred ccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhcCC
Confidence 21 1 1122232222222468888887654 0 00 00
Q ss_pred -----cc-c----ccc------------------c--------c-HHHHhCCCcEEEcCCCCcC-cCCChHHHHHHHHH-
Q psy15247 123 -----HG-S----VYS------------------Y--------N-QKFAKDNANFSLNSDDPTL-TGRYLNEDYQLAQS- 163 (203)
Q Consensus 123 -----HG-~----l~~------------------~--------p-~~l~~~Gv~vsinTDDp~~-f~t~Ls~Ey~~~~~- 163 (203)
|+ . .++ . | +.+++.|++++++||.|.. ...++..++..+..
T Consensus 175 ~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~ 254 (275)
T cd01292 175 RVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKV 254 (275)
T ss_pred CEEEECCccCCHHHHHHHHHcCCeEEECCcccccccCCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 44 0 000 1 2 7899999999999999988 55789999988877
Q ss_pred cC--CCHHHHHHH-HHHHH
Q psy15247 164 WG--FTREQFKII-NLNAA 179 (203)
Q Consensus 164 ~~--l~~~~l~~l-~~nai 179 (203)
.. ++..++.++ ..|+.
T Consensus 255 ~~~~~~~~~~~~~~t~n~a 273 (275)
T cd01292 255 LRLGLSLEEALRLATINPA 273 (275)
T ss_pred HhcCCCHHHHHHHHhcccc
Confidence 44 688888776 55554
No 22
>PRK09356 imidazolonepropionase; Validated
Probab=96.11 E-value=0.7 Score=41.16 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHhCCCcEEEcCCCCc-Cc-CCChHHHHHHHHH-cCCCHHH-HHHHHHHHHHHcCCCH
Q psy15247 131 QKFAKDNANFSLNSDDPT-LT-GRYLNEDYQLAQS-WGFTREQ-FKIINLNAAEASFQPE 186 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~-~f-~t~Ls~Ey~~~~~-~~l~~~~-l~~l~~nai~~sF~~~ 186 (203)
+.++++|++|+++||.+. .. ..++...+..+.. .+++..+ ++..+.|+.+....++
T Consensus 302 ~~l~~~Gi~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~ 361 (406)
T PRK09356 302 RLLRDAGVPVALATDFNPGSSPTESLLLAMNMACTLFRLTPEEALAAVTINAARALGRQD 361 (406)
T ss_pred HHHHHCCCeEEEeCCCCCCCChhHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 889999999999999743 21 1345444445555 7899888 4666789888877643
No 23
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=96.09 E-value=0.014 Score=49.08 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=35.9
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCC----CHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGF----TREQFKI 173 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l----~~~~l~~ 173 (203)
+.|+++||+|+++||++.....++.+++..+.. .++ +..++..
T Consensus 207 ~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (263)
T cd01305 207 AELLKLGIKVLLGTDNVMVNEPDMWAEMEFLAKYSRLQGYLSPLEILR 254 (263)
T ss_pred HHHHHCCCcEEEECCCCccCCCCHHHHHHHHHHHhcccccCCHHHHHH
Confidence 999999999999999988777899999999887 665 5555433
No 24
>PRK07213 chlorohydrolase; Provisional
Probab=95.48 E-value=0.024 Score=50.46 Aligned_cols=52 Identities=6% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHHHH-HHHHHHHc
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKII-NLNAAEAS 182 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~~l-~~nai~~s 182 (203)
+.|+++||+|+|+||++.....++.+|+..+.. ++++..++.++ ..|+.+.-
T Consensus 270 ~~l~~~Gv~v~lGTD~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~l 323 (375)
T PRK07213 270 NEMLEKGILLGIGTDNFMANSPSIFREMEFIYKLYHIEPKEILKMATINGAKIL 323 (375)
T ss_pred HHHHHCCCEEEEeeCCCCCchHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh
Confidence 999999999999999987666788899998888 89998876664 46776654
No 25
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=95.07 E-value=1.7 Score=39.23 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=38.6
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHH---H-cCC-----CH-HHHHHHHHHHHHHcCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQ---S-WGF-----TR-EQFKIINLNAAEASFQ 184 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~---~-~~l-----~~-~~l~~l~~nai~~sF~ 184 (203)
.| +.++++|++|+++||++.-.+ .++-+|...+. + .++ +. +-++..+.|+.+....
T Consensus 279 ~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~ 346 (424)
T PRK08393 279 MPLRKLLNAGVNVALGTDGAASNNNLDMLREMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGL 346 (424)
T ss_pred CCHHHHHHCCCcEEEecCCCccCCchhHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCC
Confidence 35 899999999999999986544 37878887643 2 222 33 3466677777766544
No 26
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.28 E-value=0.21 Score=45.29 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHHcCCCHHH-HHHHHHHHHHHcC
Q psy15247 131 QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQSWGFTREQ-FKIINLNAAEASF 183 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~~~l~~~~-l~~l~~nai~~sF 183 (203)
+.++++||+|+|+||.+... ..++.-+...+++.|+|.+| |+..+.|+.++-=
T Consensus 300 ~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~gmtp~EaL~a~T~naA~alG 354 (406)
T COG1228 300 RKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRLGMTPEEALKAATINAAKALG 354 (406)
T ss_pred HHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999887 57788888888884499887 7778888877643
No 27
>PRK06687 chlorohydrolase; Validated
Probab=93.20 E-value=6.1 Score=35.45 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=36.8
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH-c--------CCCHHHHHHH-HHHHHHHcCCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS-W--------GFTREQFKII-NLNAAEASFQP 185 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~-~--------~l~~~~l~~l-~~nai~~sF~~ 185 (203)
.| +.|+++||+|+|+||.+.-.+ .++-++...+.. . .++..++..+ ..|+.+....+
T Consensus 286 ~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 354 (419)
T PRK06687 286 APIIQLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGME 354 (419)
T ss_pred CcHHHHHHCCCeEEEeCCCCCCCCChhHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCC
Confidence 35 999999999999999864332 355555544332 1 2676665444 46777766554
No 28
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=93.06 E-value=0.27 Score=42.62 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=41.0
Q ss_pred HHHHhCCCcEEEcCCCCc--CcCCChHHHHHHHHHcCCCHHHHHH-HHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPT--LTGRYLNEDYQLAQSWGFTREQFKI-INLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~--~f~t~Ls~Ey~~~~~~~l~~~~l~~-l~~nai~~sF~~ 185 (203)
+.++++||+|+++||.|. ..+.++-.|+..+.+.+++..+..+ ...|+.+....+
T Consensus 257 ~~l~~~Gv~v~~GTD~~~~~~~~~~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~ 314 (342)
T cd01299 257 RRAHKAGVKIAFGTDAGFPVPPHGWNARELELLVKAGGTPAEALRAATANAAELLGLS 314 (342)
T ss_pred HHHHHcCCeEEEecCCCCCCCchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence 789999999999999985 4455677787766657788877555 446777765543
No 29
>PRK14085 imidazolonepropionase; Provisional
Probab=89.83 E-value=0.81 Score=40.67 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=37.4
Q ss_pred HHHHhCCCcEEEcCCCCcC--cCCChHHHHHHHHH-cCCCHHHHHH-HHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTL--TGRYLNEDYQLAQS-WGFTREQFKI-INLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~--f~t~Ls~Ey~~~~~-~~l~~~~l~~-l~~nai~~sF~~ 185 (203)
+.++++||+|+++||.+.. +...+......+.. .+++..+..+ .+.|+.+....+
T Consensus 286 ~~l~~aGv~v~lgsD~~~~~~~~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 286 RRLLDAGVTVALASDCNPGSSYTSSMPFCVALAVRQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred HHHHHCCCcEEEEeCCCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999998532 22334444444555 7899888554 556677666553
No 30
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=89.25 E-value=1.1 Score=34.31 Aligned_cols=74 Identities=12% Similarity=-0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCceEEEEccCccchh---hhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHH
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHKLL---GTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPD 95 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~ 95 (203)
...+.++...||+|+|+|.....-. -.|-..-..+++++++++.+.+-+.+...+ -+|+++-.+.+.+.-..
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e-----~VIl~l~~~~~~~~~~~ 105 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPY-----PVILSLENHCSPDQQAK 105 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCC-----cEEEeehhhCCHHHHHH
Confidence 3456677889999999998643210 011000001356666666665555433222 25788777776654433
Q ss_pred HH
Q psy15247 96 TL 97 (203)
Q Consensus 96 ~~ 97 (203)
++
T Consensus 106 l~ 107 (135)
T smart00148 106 MA 107 (135)
T ss_pred HH
Confidence 33
No 31
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=89.21 E-value=1.4 Score=39.31 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=39.2
Q ss_pred HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH-cC-----CCH-HHHHHHHHHHHHHcC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS-WG-----FTR-EQFKIINLNAAEASF 183 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~-~~-----l~~-~~l~~l~~nai~~sF 183 (203)
+.|+++||+|+|+||.+.-.+ .++-+++..+.. .. ++. +-++....|+.+.--
T Consensus 274 ~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg 334 (381)
T cd01312 274 SELKKAGIPVSLGTDGLSSNISLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALG 334 (381)
T ss_pred HHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999886555 488889888776 43 343 445566667766543
No 32
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=89.21 E-value=1.5 Score=38.74 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHH-c--------CCCHHHHHHHH-HHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQS-W--------GFTREQFKIIN-LNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~-~--------~l~~~~l~~l~-~nai~~sF~~ 185 (203)
+.++++|++++++||.|... ..++-.|+..+.. . +++..++.+++ .|+.+...++
T Consensus 287 ~~~~~~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~ 352 (411)
T cd01298 287 PEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLD 352 (411)
T ss_pred HHHHHCCCcEEEeCCCCccCCCcCHHHHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHHHHhCCc
Confidence 89999999999999998654 3566666655432 1 57877655544 5777766554
No 33
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=88.69 E-value=0.76 Score=37.66 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHhCCCcEEEcCCCCcC---cC-CChHHHHHHHHHcCCCHHHHHH-HHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTL---TG-RYLNEDYQLAQSWGFTREQFKI-INLNAAE 180 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~---f~-t~Ls~Ey~~~~~~~l~~~~l~~-l~~nai~ 180 (203)
+.++++|++|+|+||.+.. .. ..+..++..+..+|++.++..+ +..|+.+
T Consensus 230 ~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~~pA~ 284 (304)
T PF13147_consen 230 RELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATSNPAR 284 (304)
T ss_dssp HHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTHHHHH
T ss_pred HHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHHHHHH
Confidence 7999999999999999984 33 4444444444449999977544 4444443
No 34
>PRK06886 hypothetical protein; Validated
Probab=87.09 E-value=2.3 Score=37.48 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHhCCCcEEEcCCCCc-----CcCCChHHHHHHHHH-cCCC-HHHHHH-HHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPT-----LTGRYLNEDYQLAQS-WGFT-REQFKI-INLNAAE 180 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~-----~f~t~Ls~Ey~~~~~-~~l~-~~~l~~-l~~nai~ 180 (203)
+.|+++||+|+++||+.. +-..++-++...+.. .++. ..++.. ...|+.+
T Consensus 266 ~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~~~~~~~~~l~maT~~gAr 323 (329)
T PRK06886 266 DEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGCRFYDLDEMVNIASINGRK 323 (329)
T ss_pred HHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHhhhHHH
Confidence 899999999999999974 334688777777776 5543 344333 3335444
No 35
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=86.92 E-value=23 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS 163 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~ 163 (203)
+.|+++||+|+|.||.. ..++-+|...+..
T Consensus 297 ~~~~~~Gv~v~LGtD~~---~~d~~~em~~a~~ 326 (441)
T TIGR03314 297 LRMFKNGILLGLGTDGY---TSDMFESLKFANF 326 (441)
T ss_pred HHHHHCCCEEEEcCCCC---CcCHHHHHHHHHH
Confidence 99999999999999964 3588888876654
No 36
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=86.52 E-value=2.2 Score=37.67 Aligned_cols=54 Identities=30% Similarity=0.368 Sum_probs=36.8
Q ss_pred HHHHhCC-CcEEEcCCCCcCcCCChHHHHHHHHHcCCCHHHH-HHHHHHHHHHcCC
Q psy15247 131 QKFAKDN-ANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQF-KIINLNAAEASFQ 184 (203)
Q Consensus 131 ~~l~~~G-v~vsinTDDp~~f~t~Ls~Ey~~~~~~~l~~~~l-~~l~~nai~~sF~ 184 (203)
+.|+++| |+|+++||.|......+..+...+...+++.++. +.+..|+.+.--+
T Consensus 264 ~~l~~aGGv~valgsD~~~~~~~~l~~~~~~a~~~gl~~~~al~~~T~n~A~~lg~ 319 (359)
T cd01309 264 AYLLKKGGVAFAISSDHPVLNIRNLNLEAAKAVKYGLSYEEALKAITINPAKILGI 319 (359)
T ss_pred HHHHHcCCceEEEECCCCCccchhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 8899998 9999999998543344544444444488998774 4455677665443
No 37
>PRK08204 hypothetical protein; Provisional
Probab=86.46 E-value=2.3 Score=38.50 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH--------------------cCCCHHH-HHHHHHHHHHHcCCCH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS--------------------WGFTREQ-FKIINLNAAEASFQPE 186 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~--------------------~~l~~~~-l~~l~~nai~~sF~~~ 186 (203)
+.++++||+|+++||.+.....++-.+...+.. .+++..+ ++....|+.+....++
T Consensus 287 ~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~ 363 (449)
T PRK08204 287 GRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLED 363 (449)
T ss_pred HHHHhcCCceeeccccCCCCCcCHHHHHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCC
Confidence 999999999999999876555666666655432 2456554 5556678887777653
No 38
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=86.07 E-value=1.8 Score=37.95 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCc
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMP 39 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P 39 (203)
++++++..+...+.++.+.||.+++.++.+
T Consensus 90 t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~ 119 (398)
T cd01293 90 TAEDVKERAERALELAIAHGTTAIRTHVDV 119 (398)
T ss_pred ChHHHHHHHHHHHHHHHHcChhheeeeecc
Confidence 899999999999999999999999877664
No 39
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=86.01 E-value=27 Score=31.86 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEcc
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRY 37 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~ 37 (203)
|+++++..+...+.++.+-||..+.-..
T Consensus 94 t~e~~~~~a~~~~~e~l~~G~Ttv~d~~ 121 (455)
T TIGR02022 94 TPEQLQAIARQLYVEMLEAGFTRVGEFH 121 (455)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEeee
Confidence 8899999999999999999999888654
No 40
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=84.68 E-value=3.2 Score=37.60 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=39.1
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH---------cCCCHHHHHHH-HHHHHHHcCCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS---------WGFTREQFKII-NLNAAEASFQP 185 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~---------~~l~~~~l~~l-~~nai~~sF~~ 185 (203)
+| +.++++|++|+++||.|...+ .++-.+...+.. .+++.++...+ ..|+.+....+
T Consensus 292 ~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~ 360 (443)
T PRK09045 292 CPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKAVAGDATALPAHTALRMATLNGARALGLD 360 (443)
T ss_pred CcHHHHHHCCCeEEEecCCCCCCCCccHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCC
Confidence 35 999999999999999986544 466666655432 13677765444 46887776654
No 41
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=82.35 E-value=4.3 Score=36.71 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=38.5
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-c-----------CCCHHHHHH-HHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-W-----------GFTREQFKI-INLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~-----------~l~~~~l~~-l~~nai~~sF~~ 185 (203)
+.++++|++|+++||.+.....++-++...+.. . +++..++.+ ...|+.+...++
T Consensus 304 ~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~ 371 (429)
T cd01303 304 RKLLDAGIKVGLGTDVGGGTSFSMLDTLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLD 371 (429)
T ss_pred HHHHHCCCeEEEeccCCCCCCccHHHHHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCC
Confidence 899999999999999876555677777665443 1 246555444 457787776654
No 42
>PRK06846 putative deaminase; Validated
Probab=81.40 E-value=3.9 Score=36.67 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=30.9
Q ss_pred HHHHhCCCcEEEcCCCCc----CcC-CChHHHHHHHHH-cCCCHHH
Q psy15247 131 QKFAKDNANFSLNSDDPT----LTG-RYLNEDYQLAQS-WGFTREQ 170 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~----~f~-t~Ls~Ey~~~~~-~~l~~~~ 170 (203)
+.|+++||+|+++||+|. -++ .+|-++...+.. .+++..+
T Consensus 297 ~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~ 342 (410)
T PRK06846 297 PLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELYRWSDER 342 (410)
T ss_pred HHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHhcCCCHH
Confidence 999999999999999762 233 578888887776 6666543
No 43
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=80.55 E-value=2.1 Score=32.82 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHHCCceEEEEccC------ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccH
Q psy15247 20 EFIEDCSKNNVAYVEVRYM------PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTV 93 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~------P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a 93 (203)
.-+.+....||+|+|||.. |..+... ...++.++++++..+.+-+.+...+ =+|+++-.+.+++.-
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~---~~~~~~~~~dvL~~i~~fl~~~p~E-----~VIl~~~~~~~~~~~ 101 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDGNDGELVVYHGI---TSTSGITFEDVLNDIRDFLFEHPSE-----PVILSLKHEYSPEQQ 101 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEETTSSEEEEETT---SEE-EEEHHHHHHHHHHHTTHSTTS------EEEEEEEESTHHHH
T ss_pred HhHHHHHhccCceEEEEEEcCCCCceEEEeCC---EeeeeEeHHHHHHHHHHHHhcCCCe-----EEEEEeecccchhhH
Confidence 4566777889999999987 2221110 0012467888887777765543332 147777766666544
Q ss_pred HHHHH
Q psy15247 94 PDTLR 98 (203)
Q Consensus 94 ~~~~~ 98 (203)
....+
T Consensus 102 ~~~~~ 106 (146)
T PF00388_consen 102 NKLAE 106 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 44
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=79.03 E-value=7.8 Score=34.44 Aligned_cols=55 Identities=15% Similarity=-0.017 Sum_probs=37.5
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH------cCCCHHHHHHHH-HHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS------WGFTREQFKIIN-LNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~------~~l~~~~l~~l~-~nai~~sF~~ 185 (203)
+.++++|++|+++||.+.-...++-++...+.. .+++..+..+++ .|+.+.-..+
T Consensus 282 ~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~ 343 (401)
T TIGR02967 282 KKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQLQGARLSPFEAFYLATLGGARALDLD 343 (401)
T ss_pred HHHHHCCCeEEEecCCCCCCCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCCc
Confidence 899999999999999865333466666655433 247777655544 5776665443
No 45
>PRK08418 chlorohydrolase; Provisional
Probab=78.60 E-value=8 Score=34.84 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=36.9
Q ss_pred HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHH--cCCC-----HHHHHHHHHHHHHHcCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQS--WGFT-----REQFKIINLNAAEASFQ 184 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~--~~l~-----~~~l~~l~~nai~~sF~ 184 (203)
+.|+++||+|+|+||.+.-. ..++-+|...+.. .+.+ .+-++....|+.++.-.
T Consensus 297 ~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~ 358 (408)
T PRK08418 297 EKAKKAGINYSIATDGLSSNISLSLLDELRAALLTHANMPLLELAKILLLSATRYGAKALGL 358 (408)
T ss_pred HHHHhCCCeEEEeCCCCCCCCCcCHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHhCC
Confidence 99999999999999975432 3577788876554 2333 23456667777766543
No 46
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=76.39 E-value=22 Score=30.23 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHH-HhhCCCceEEEeCCCCCCCccccccccccc
Q psy15247 52 GYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLA-QNCTHYGVVGIDLLSIQPETGPHGSVYSYN 130 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a-~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p 130 (203)
|++....+++-+++... .+-+|.+|.+-+...- +++++.+.+... ..+.|+.++-+.=.+.-| =|
T Consensus 11 GNig~s~~idl~lDErA---dRedI~vrv~gsGaKm-~pe~~~~~~~~~~~~~~pDf~i~isPN~a~P----------GP 76 (277)
T PRK00994 11 GNIGMSPVIDLLLDERA---DREDIDVRVVGSGAKM-GPEEVEEVVKKMLEEWKPDFVIVISPNPAAP----------GP 76 (277)
T ss_pred cccchHHHHHHHHHhhh---cccCceEEEeccCCCC-CHHHHHHHHHHHHHhhCCCEEEEECCCCCCC----------Cc
Confidence 46777888888888754 2347999999888874 566777666555 577788776665433211 13
Q ss_pred ----HHHHhCCCcEEEcCCCCcCc
Q psy15247 131 ----QKFAKDNANFSLNSDDPTLT 150 (203)
Q Consensus 131 ----~~l~~~Gv~vsinTDDp~~f 150 (203)
..|-+.|+||.|=||+|+.=
T Consensus 77 ~~ARE~l~~~~iP~IvI~D~p~~K 100 (277)
T PRK00994 77 KKAREILKAAGIPCIVIGDAPGKK 100 (277)
T ss_pred hHHHHHHHhcCCCEEEEcCCCccc
Confidence 45556899999999999864
No 47
>PRK07572 cytosine deaminase; Validated
Probab=76.33 E-value=6.8 Score=35.37 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEE
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEV 35 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~El 35 (203)
|+++++..+...++.+.+.|+.++=-
T Consensus 92 t~edl~~~a~~~~~e~l~~G~Ttvrd 117 (426)
T PRK07572 92 TQEALVERALRYCDWAVARGLLAIRS 117 (426)
T ss_pred CHHHHHHHHHHHHHHHHHcCcccEee
Confidence 88999999999999999999986544
No 48
>PRK06380 metal-dependent hydrolase; Provisional
Probab=76.15 E-value=6.8 Score=35.07 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH-c--------CCCHHH-HHHHHHHHHHHcC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS-W--------GFTREQ-FKIINLNAAEASF 183 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~-~--------~l~~~~-l~~l~~nai~~sF 183 (203)
+.++++||+|+++||.++..+ .++-++...+.. . .++..+ ++....|+.+..-
T Consensus 280 ~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg 343 (418)
T PRK06380 280 PEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVKNERWDASIIKAQEILDFATINAAKALE 343 (418)
T ss_pred HHHHHCCCeEEEcCCCCcCCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhC
Confidence 899999999999999875432 455455554422 1 145444 4445556666543
No 49
>PRK05985 cytosine deaminase; Provisional
Probab=75.62 E-value=7.7 Score=34.43 Aligned_cols=24 Identities=4% Similarity=-0.010 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV 33 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~ 33 (203)
+.++++.-+...+..+.+.|+.++
T Consensus 92 ~~~~~~~~a~~~~~~~l~~G~t~v 115 (391)
T PRK05985 92 SGHPAAERALALARAAAAAGTTAM 115 (391)
T ss_pred chhHHHHHHHHHHHHHHhcCcceE
Confidence 556888889999999999999996
No 50
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=74.90 E-value=11 Score=34.10 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHH---------cCCCHHHHHHH-HHHHHHHcCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQS---------WGFTREQFKII-NLNAAEASFQ 184 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~---------~~l~~~~l~~l-~~nai~~sF~ 184 (203)
+.|+++||+|+|+||.+.-. ..++-+|...+.. ..++.+++.++ +.|+.+....
T Consensus 290 ~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~ 354 (435)
T PRK15493 290 KAMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIGM 354 (435)
T ss_pred HHHHHCCCeEEEccCccccCCCcCHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCC
Confidence 99999999999999985432 2466666654332 14677665554 5667766554
No 51
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=74.87 E-value=13 Score=31.82 Aligned_cols=65 Identities=18% Similarity=0.071 Sum_probs=37.7
Q ss_pred HHHHHHHHCCceEEEEccCccc---hhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCc
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPHK---LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPV 90 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~ 90 (203)
.-+.+....||+|+|||..... ..-.|- ....+++++++++++.+-+.+... -=+|+++-++.+.
T Consensus 38 ~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG-~~~~~~~f~dvl~~i~~fl~~~p~-----e~vIlsl~~~~~~ 105 (274)
T cd00137 38 EMYRQQLLSGCRCVDIRCWDGKPEEPIIYHG-PTFLDIFLKEVIEAIAQFLKKNPP-----ETIIMSLKNEVDS 105 (274)
T ss_pred HHHHHHHHcCCcEEEEEeecCCCCCeEEEEC-CcccCcCHHHHHHHHHHHHHHCCC-----CeEEEEEEecCCC
Confidence 4556667799999999975321 111110 000135677777666665543322 2258898888876
No 52
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=73.96 E-value=7.8 Score=35.36 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHH------------H-cCCCHHH-HHHHHHHHHHHcCCCH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQ------------S-WGFTREQ-FKIINLNAAEASFQPE 186 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~------------~-~~l~~~~-l~~l~~nai~~sF~~~ 186 (203)
+.++++|++|+++||.|... .+.-...+.+. . .++|..+ ++..+.|+.+..+.++
T Consensus 396 ~~~~~~Gv~v~lGSD~~~~~-~~p~~~~~~av~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~e~ 464 (479)
T cd01300 396 RSLLDAGVPVALGSDAPVAP-PDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEED 464 (479)
T ss_pred HHHHHCCCeeeccCCCCCCC-CCHHHHHHHHheeeCCCCCCCCCccccCCHHHHHHHHHHHHHHHhcccc
Confidence 88999999999999998543 22223333332 1 2456665 5556678877766543
No 53
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=73.93 E-value=13 Score=33.54 Aligned_cols=28 Identities=11% Similarity=0.034 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEcc
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRY 37 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~ 37 (203)
|+++++..+...+.++.+.||..+.-..
T Consensus 85 t~e~~~~~a~~~~~e~l~~G~Ttv~d~~ 112 (418)
T cd01313 85 TPEQIEAIARQLYIEMLLAGITAVGEFH 112 (418)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 8899999999999999999999887543
No 54
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.46 E-value=45 Score=28.29 Aligned_cols=88 Identities=9% Similarity=0.011 Sum_probs=59.0
Q ss_pred HHHHHHCCceEEEEccC--ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEe-ecCCCCcccHHHHHH
Q psy15247 22 IEDCSKNNVAYVEVRYM--PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILS-CATKWPVDTVPDTLR 98 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~--P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~-~~R~~~~e~a~~~~~ 98 (203)
++.+.+-|+..+-+.++ +...... .+.+.++.++.+.+.++.++.. |+.+.+-+. +.| .+++...++++
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~------~~~~~~e~~~~~~~~i~~a~~~-G~~v~~~~eda~r-~~~~~l~~~~~ 148 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREAS------HGKSITEIIESAVEVIEFVKSK-GIEVRFSSEDSFR-SDLVDLLRVYR 148 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHH------hCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeeCC-CCHHHHHHHHH
Confidence 45566678887777664 3222222 2578999999999999988764 777766654 445 46677777777
Q ss_pred HHHhhCCCceEEEeCCCCC
Q psy15247 99 LAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 99 ~a~~~~~~~vvG~dL~G~E 117 (203)
.+.....+.|.=-|-.|--
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~ 167 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIA 167 (262)
T ss_pred HHHHcCCCEEEECCcCCCC
Confidence 7776655555555777755
No 55
>PRK12393 amidohydrolase; Provisional
Probab=71.71 E-value=9.8 Score=34.74 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=35.8
Q ss_pred HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHH-c-------CCCHHH-HHHHHHHHHHHcCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQS-W-------GFTREQ-FKIINLNAAEASFQ 184 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~-~-------~l~~~~-l~~l~~nai~~sF~ 184 (203)
+.|+++|++|+++||.+.-. ..++-++...+.. . .++.++ ++....|+.+....
T Consensus 311 ~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~ 374 (457)
T PRK12393 311 LAMEAAGVPVSLGVDGAASNESADMLSEAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGL 374 (457)
T ss_pred HHHHHCCCeEEEecCCcccCCCccHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCC
Confidence 99999999999999987543 3466666655433 2 256555 44555666666554
No 56
>PRK09228 guanine deaminase; Provisional
Probab=71.01 E-value=17 Score=32.89 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH------cCCCHHHHHHH-HHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS------WGFTREQFKII-NLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~------~~l~~~~l~~l-~~nai~~sF~~ 185 (203)
+.++++|++|+|+||-+.-...++-++...+.. .+++.+++..+ ..|+.+.-.++
T Consensus 307 ~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~ 368 (433)
T PRK09228 307 KRADAAGVRVGLGTDVGGGTSFSMLQTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLD 368 (433)
T ss_pred HHHHHCCCeEEEecCCCCCCCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCC
Confidence 899999999999999865334466666554432 34677665444 56777666554
No 57
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=71.00 E-value=11 Score=34.28 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH-c-------CCCHHH-HHHHHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS-W-------GFTREQ-FKIINLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~-~-------~l~~~~-l~~l~~nai~~sF~~ 185 (203)
+.++++|++|+++||.|.... .++-.|...+.. . .++..+ +...+.|+.+....+
T Consensus 307 ~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg~~ 371 (451)
T PRK08203 307 RELRAAGVPVGLGVDGSASNDGSNLIGEARQALLLQRLRYGPDAMTAREALEWATLGGARVLGRD 371 (451)
T ss_pred HHHHHCCCeEEEecCCCccCCCcCHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999875432 466666655432 1 266665 455567777766543
No 58
>PRK07583 cytosine deaminase-like protein; Validated
Probab=70.02 E-value=14 Score=33.46 Aligned_cols=29 Identities=3% Similarity=-0.117 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYM 38 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~ 38 (203)
+.+++.+-+...++.++..|+.+++....
T Consensus 116 ~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd 144 (438)
T PRK07583 116 SAEDLYRRMEFGLRCAYAHGTSAIRTHLD 144 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhEEeeec
Confidence 35677777888888889999998888765
No 59
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=68.73 E-value=13 Score=33.49 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=36.5
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCc-CCChHHHHHHHHH---------cCCCHHH-HHHHHHHHHHHcCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLT-GRYLNEDYQLAQS---------WGFTREQ-FKIINLNAAEASFQ 184 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f-~t~Ls~Ey~~~~~---------~~l~~~~-l~~l~~nai~~sF~ 184 (203)
.| +.|+++||+|+++||.+.-. ..++-++...+.. .+++..+ ++....|+.+....
T Consensus 280 ~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~ 347 (430)
T PRK06038 280 APVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHKVNTMDPTALPARQVLEMATVNGAKALGI 347 (430)
T ss_pred CCHHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHhHHHHHHhCC
Confidence 35 99999999999999976433 3466666655432 2355555 44445577666554
No 60
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=65.71 E-value=23 Score=29.24 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=34.4
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINL 176 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~~l~~ 176 (203)
+...+.|+|++|+||--..+...=.++-..+.+ +|++.+++++...
T Consensus 161 ~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~~~~~~~ 207 (237)
T PRK00912 161 ALARKYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDEALKALS 207 (237)
T ss_pred HHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 566678999999999777666544455566666 9999999877543
No 61
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=63.32 E-value=5.6 Score=35.82 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=17.5
Q ss_pred HHHHHHHCCceEEEEccC---ccchhhhhhhhccCCCCHHHH
Q psy15247 21 FIEDCSKNNVAYVEVRYM---PHKLLGTELYQMLGYEGLKET 59 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~~---P~~~~~~~~~~~~~~~~~~~~ 59 (203)
-++++.++||.|+|+|.- |.. .. |++.+++
T Consensus 311 ~l~~L~~~Gi~YiE~R~lDlnPf~--~~-------GI~~~~l 343 (377)
T PF04262_consen 311 PLDALLRRGIEYIELRSLDLNPFS--PI-------GISEDQL 343 (377)
T ss_dssp CHHHHHHH---EEEEEEEE--TTS--TT-------SS-HHHH
T ss_pred hHHHHHhcCCeEEEEeeccCCCCC--cC-------CCCHHHH
Confidence 367888999999999943 543 32 6877543
No 62
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=62.32 E-value=25 Score=31.81 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLA 161 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~ 161 (203)
+.|+++||+|+|+||.. ..++-+++..+
T Consensus 298 ~~~~~~Gv~v~lGtD~~---~~d~~~~~~~a 325 (442)
T PRK07203 298 LEMIKNGILLGLGTDGY---TSDMFESYKVA 325 (442)
T ss_pred HHHHHCCCeEEEcCCCC---CccHHHHHHHH
Confidence 99999999999999975 34777777665
No 63
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.99 E-value=74 Score=25.64 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCCCCccccccccccc--HHHHhC
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN--QKFAKD 136 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p--~~l~~~ 136 (203)
+...+.++++++.++.|+.+.++ .....+++.-.+.++.++....++|+-.-....+ . .| .++.++
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~---~-------~~~l~~~~~~ 79 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS---L-------APFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT---T-------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH---H-------HHHHHHHhhc
Confidence 88899999999999999988887 4555556666778888877766666633233221 1 13 789999
Q ss_pred CCcEEE-cCC
Q psy15247 137 NANFSL-NSD 145 (203)
Q Consensus 137 Gv~vsi-nTD 145 (203)
||||.. ++|
T Consensus 80 gIpvv~~d~~ 89 (257)
T PF13407_consen 80 GIPVVTVDSD 89 (257)
T ss_dssp TSEEEEESST
T ss_pred CceEEEEecc
Confidence 999876 455
No 64
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=61.41 E-value=23 Score=31.90 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHhCCCcE---EEcCCCCc---CcCC-------------ChHHHHHHHHH-cCCCHHHHH-HHHHHHHHH
Q psy15247 131 QKFAKDNANF---SLNSDDPT---LTGR-------------YLNEDYQLAQS-WGFTREQFK-IINLNAAEA 181 (203)
Q Consensus 131 ~~l~~~Gv~v---sinTDDp~---~f~t-------------~Ls~Ey~~~~~-~~l~~~~l~-~l~~nai~~ 181 (203)
+.++++|+++ +++||-.+ +|+. ++..++..+.. .+++.++.. ....|+.+.
T Consensus 269 ~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~ 340 (389)
T TIGR01975 269 KKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGV 340 (389)
T ss_pred HHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8899999985 99999753 3321 45677777777 779998844 556666655
No 65
>PRK08392 hypothetical protein; Provisional
Probab=61.36 E-value=15 Score=30.02 Aligned_cols=41 Identities=12% Similarity=-0.034 Sum_probs=27.0
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQF 171 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l 171 (203)
+.+.+.|+||+++||-=...+..--++-..+++ .|++.+++
T Consensus 168 ~~~~~~G~~~~igSDAH~~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 168 RECIKRGIKLTFASDAHRPEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred HHHHHcCCEEEEeCCCCChHHCCcHHHHHHHHHHcCCCHHHe
Confidence 778899999999999544433221223344445 88888775
No 66
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=60.71 E-value=12 Score=34.12 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEE
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEV 35 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~El 35 (203)
++++++..+...+.++.+-|+.-+.-
T Consensus 94 ~~e~~~~~a~~~~~e~L~~G~Ttv~d 119 (456)
T PRK09229 94 TPDQLEAIARQLYVEMLEAGYTSVGE 119 (456)
T ss_pred CHHHHHHHHHHHHHHHHhhCCcEEEe
Confidence 88899999999999999999987754
No 67
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=57.81 E-value=11 Score=35.33 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHCCceEEEEcc---CccchhhhhhhhccCCCCHHH
Q psy15247 21 FIEDCSKNNVAYVEVRY---MPHKLLGTELYQMLGYEGLKE 58 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~---~P~~~~~~~~~~~~~~~~~~~ 58 (203)
-++.+.+.||.|+|+|. +|.. .. |++.++
T Consensus 310 ~l~aL~~~GVeYIEvR~lDlnPf~--~~-------GI~~~q 341 (512)
T TIGR01434 310 PSDALLRRGIEYVEVRSLDINPFS--PI-------GIDEQQ 341 (512)
T ss_pred hHHHHHhcCCcEEEEeeccCCCCC--cC-------CCCHHH
Confidence 57788899999999994 3543 32 677655
No 68
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=57.71 E-value=11 Score=35.40 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=21.3
Q ss_pred HHHHHHHCCceEEEEcc---CccchhhhhhhhccCCCCHHH
Q psy15247 21 FIEDCSKNNVAYVEVRY---MPHKLLGTELYQMLGYEGLKE 58 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~---~P~~~~~~~~~~~~~~~~~~~ 58 (203)
-++.+.+.||.|+|+|. +|.. .. |++.++
T Consensus 314 ~l~aL~~~GIeYIEvR~lDlNPf~--~~-------GI~~~q 345 (523)
T PRK02107 314 PSDALARRGVEYIEVRSLDINPFS--PI-------GIDEEQ 345 (523)
T ss_pred HHHHHHhcCCcEEEEeeccCCCCC--cC-------CCCHHH
Confidence 56788899999999994 3543 32 677665
No 69
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=57.37 E-value=16 Score=32.18 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=36.1
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHH--H-c------------CCCHHH-HHHHHHHHHHHcCCCH
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQ--S-W------------GFTREQ-FKIINLNAAEASFQPE 186 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~--~-~------------~l~~~~-l~~l~~nai~~sF~~~ 186 (203)
+| +.++++|++|+++||-|......+.. ++.+. . . .+|.++ |+.+..|+.+..+.++
T Consensus 316 ~~~~~~~~~Gv~v~~gsD~p~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~ 389 (404)
T PF07969_consen 316 YPIRSLLDAGVRVALGSDAPVSPPNPFRG-IWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLED 389 (404)
T ss_dssp THHHHHHHCTTEEEE--TTTTSSCCHHHH-HHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TT
T ss_pred hHHHHHHhccCceecCcCCcccccCcchh-hhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCC
Confidence 45 99999999999999999744444422 22221 1 1 366666 7778888888776654
No 70
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=56.55 E-value=95 Score=24.32 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ 75 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (203)
+++.+++..+..++.+.+.|++-+ .-|...+.. .|++.+++.+.+++++.++-.+.+
T Consensus 93 ~~~~L~~~~~~~L~~a~~~~~~SI---A~P~lgtG~------~g~p~~~~a~~~~~~i~~fl~~~~ 149 (175)
T cd02907 93 CVEKLKKAILNSLRKAEELGLRSI---AIPAISSGI------FGFPLERCVETIVEAVKEFLETKG 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEE---EECCcccCC------CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 477899999999999988887632 126555554 489999999999999999877653
No 71
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=55.84 E-value=74 Score=25.75 Aligned_cols=50 Identities=2% Similarity=-0.054 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEE
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGI 111 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~ 111 (203)
+...+.+++.++.++.|..+.+..+ . .+++.-.+.++.+.....++|+-+
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~~~~~~--~-~~~~~~~~~i~~~~~~~vdgii~~ 62 (268)
T cd06270 13 FFGPLLSGVESVARKAGKHLIITAG--H-HSAEKEREAIEFLLERRCDALILH 62 (268)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEeC--C-CchHHHHHHHHHHHHcCCCEEEEe
Confidence 5566777777777778877665433 2 233334556666555444554444
No 72
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=55.58 E-value=30 Score=31.20 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=34.9
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcC-CChHHHHHHHHH---c------CCCHHHHHH-HHHHHHHHcCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTG-RYLNEDYQLAQS---W------GFTREQFKI-INLNAAEASFQ 184 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~-t~Ls~Ey~~~~~---~------~l~~~~l~~-l~~nai~~sF~ 184 (203)
.| +.++++|++++++||.+.... .++-.++..+.. . .++..++.+ ...|+.+....
T Consensus 289 ~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~ 356 (445)
T PRK07228 289 APVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQKVDRLGPTAMPARTVFEMATLGGAKAAGF 356 (445)
T ss_pred CcHHHHHHCCCeEEEcCCCCccCCCccHHHHHHHHHHHhhhccCCCcccCHHHHHHHHHHHHHHHhCC
Confidence 35 999999999999999865432 344445543322 1 366666444 44566666544
No 73
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=54.51 E-value=23 Score=30.29 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=39.4
Q ss_pred EEcCCCCcCcCCChHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q psy15247 141 SLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKIINLNAAEASFQPEHEKKELIKLLESEY 200 (203)
Q Consensus 141 sinTDDp~~f~t~Ls~Ey~~~~~~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~~~ 200 (203)
+|-|+---+...++..+|... +|+|.+|+.++...-++..-... .+.+.++++.+||
T Consensus 202 si~S~lNn~~~~s~~~~f~~~--~GFT~~Ev~~ll~~~~~~~~~~~-~~~~~~~~lk~wY 258 (284)
T PF09820_consen 202 SIFSGLNNLEDISLDPRFSEY--FGFTEEEVETLLKYYIENLAEEQ-DREELLEELKEWY 258 (284)
T ss_pred cCccccCCceecccchhHhhh--cCcCHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHc
Confidence 345554445556666655433 89999999999998876654333 6677788888775
No 74
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=54.46 E-value=1.6e+02 Score=26.20 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHCCceEEEEccC--ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEE-eecCCCCcccHHHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYM--PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSIL-SCATKWPVDTVPDT 96 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~--P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~-~~~R~~~~e~a~~~ 96 (203)
+-++.+.+-|+..+-+.++ |...... -+.+.+++++.+.+.++.+++. |..+.+-+ +..|. +++...++
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~------~~~~~~~~~~~~~~~i~~ak~~-G~~v~~~~eda~r~-~~~~l~~~ 146 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYK------LKKSRDEVLEKAVEAVEYAKEH-GLIVEFSAEDATRT-DIDFLIKV 146 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHH------hCCCHHHHHHHHHHHHHHHHHc-CCEEEEEEeecCCC-CHHHHHHH
Confidence 3355566778888777654 3221111 1578999999999999988654 77766654 44453 56677778
Q ss_pred HHHHHhhCCCceEEEeCCCCC
Q psy15247 97 LRLAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 97 ~~~a~~~~~~~vvG~dL~G~E 117 (203)
++.+.+...+.|.=-|-.|.-
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~~ 167 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGVL 167 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCcc
Confidence 887776655556666777765
No 75
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=52.57 E-value=90 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=24.8
Q ss_pred cCCCCcccHHHHHHHHHhhCCCceEEEeCCCCC
Q psy15247 85 ATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 85 ~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~E 117 (203)
+...+++...+.-+.|+.. ++|||+.++-.+
T Consensus 94 NTyApvevLre~ye~aL~~--~~VVGLsIgTRP 124 (312)
T COG1242 94 NTYAPVEVLREMYEQALSE--AGVVGLSIGTRP 124 (312)
T ss_pred cccCcHHHHHHHHHHHhCc--CCeeEEeecCCC
Confidence 4456777888888888887 569999999887
No 76
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=50.31 E-value=1.2e+02 Score=24.70 Aligned_cols=53 Identities=11% Similarity=-0.041 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCC
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSI 116 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~ 116 (203)
+...+.+++.++.+++|+.+-+.. .... ......+.......++|+-.+...+
T Consensus 24 ~~~~~~~gi~~~~~~~g~~~~v~~-~~~~----~~~~~~~~l~~~~~dgiii~~~~~~ 76 (275)
T cd06295 24 FFLSLLGGIADALAERGYDLLLSF-VSSP----DRDWLARYLASGRADGVILIGQHDQ 76 (275)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEe-CCch----hHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 566777777777777787664432 2111 2233444444455677766665444
No 77
>PRK06361 hypothetical protein; Provisional
Probab=50.02 E-value=30 Score=27.93 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=27.8
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIINL 176 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~~l~~ 176 (203)
+...+.|+|++++||--.-.+..--++...+.. .|++.+++.++.+
T Consensus 155 ~~a~~~gi~vv~~SDaH~~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 155 RIAREAGAPLVINTDTHAPSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHhCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555567899999888442222221223333444 8888888877765
No 78
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=49.98 E-value=1.3e+02 Score=27.57 Aligned_cols=57 Identities=11% Similarity=-0.012 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLS 115 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G 115 (203)
+.+.+++.+++.. +++ .| +.+-+|+.+.. .+.+...++++.+.+..++.|.-+.|.+
T Consensus 184 ~~~~~~~~~ai~~----lr~-~G~~~v~~dli~GlPg-qt~e~~~~tl~~~~~l~p~~i~~y~l~~ 243 (453)
T PRK13347 184 IQPEEMVARAVEL----LRA-AGFESINFDLIYGLPH-QTVESFRETLDKVIALSPDRIAVFGYAH 243 (453)
T ss_pred CCCHHHHHHHHHH----HHh-cCCCcEEEeEEEeCCC-CCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3556655555433 322 34 45667777765 5788899999999998888777777754
No 79
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=49.53 E-value=85 Score=21.69 Aligned_cols=67 Identities=9% Similarity=0.086 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCc
Q psy15247 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPV 90 (203)
Q Consensus 12 ~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~ 90 (203)
+++-+..++.++.+...|+..-=--++-. -. -+.+++++++.+.+..+.++ +.++-+-+.+++++|-
T Consensus 14 ~dy~~~I~~~i~~~~~~gl~~~t~~~sT~---l~--------G~~~~Vf~~l~~~~~~a~~~-~~H~v~~~T~S~~~P~ 80 (81)
T PF07615_consen 14 DDYMDVILGAIDRLDDSGLWVETDHYSTQ---LR--------GDEEDVFDALEAAFERAAEE-GPHVVMVVTISNGCPG 80 (81)
T ss_dssp TTHHHHHHHHHHHCHHTTSEEEEETTEEE---EE--------CBHHHHHHHHHHHHHHHHCC-SSSEEEEEEEEES-TT
T ss_pred ccHHHHHHHHHHHHhhcCcEEeecccEEE---EE--------CCHHHHHHHHHHHHHHHhcc-CCeEEEEEEEECCCCC
Confidence 45667888888888888886653333322 22 26788999999999888775 5667777777777653
No 80
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=49.04 E-value=17 Score=35.62 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.5
Q ss_pred HHHHHHHCCceEEEEcc
Q psy15247 21 FIEDCSKNNVAYVEVRY 37 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~ 37 (203)
-++++.+.||.|+|+|.
T Consensus 259 ~~~~l~~~Gi~YiE~R~ 275 (737)
T TIGR01435 259 TVESLAKTGIEYLEIRS 275 (737)
T ss_pred cHHHHHhcCCcEEEEee
Confidence 35788899999999994
No 81
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=47.58 E-value=1.1e+02 Score=23.84 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhh
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDE 73 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 73 (203)
.+++.++...+.+++.+.+.|++-+ .-|...+.. .|++.++..+.+++++.++.++
T Consensus 85 ~~~~~L~~~~~~~L~~a~~~~~~sI---a~P~igtG~------~g~p~~~~a~~~~~ai~~fl~~ 140 (165)
T cd02908 85 NEAELLASCYRNSLELARENGLRSI---AFPAISTGV------YGYPLDEAARIALKTVREFLEE 140 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCEE---EECceecCC------CCCCHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999988887632 226555543 4799999999999999998765
No 82
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=47.22 E-value=86 Score=24.23 Aligned_cols=126 Identities=12% Similarity=0.146 Sum_probs=66.9
Q ss_pred HHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC------------
Q psy15247 22 IEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP------------ 89 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~------------ 89 (203)
++.+++-|..++|+++.+..... .. ..-.+.+++..+++|+.+--+....+...
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~----------~~----~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r 66 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD----------EK----DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDER 66 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT----------HH----HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHH
T ss_pred ChHHHHcCCCEEEEecCCCcccc----------cc----hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhh
Confidence 46778899999999998543221 11 34445566666778988766666555433
Q ss_pred ---cccHHHHHHHHHhhCCCceEEEeCC--CCCCCccccc----cccc-c-c--HHHHhCCCcEEEcCCCCcCcCCCh-H
Q psy15247 90 ---VDTVPDTLRLAQNCTHYGVVGIDLL--SIQPETGPHG----SVYS-Y-N--QKFAKDNANFSLNSDDPTLTGRYL-N 155 (203)
Q Consensus 90 ---~e~a~~~~~~a~~~~~~~vvG~dL~--G~EpE~~gHG----~l~~-~-p--~~l~~~Gv~vsinTDDp~~f~t~L-s 155 (203)
.+...+.++.|..+..+ .+.+... +..++.. .. .+.+ . . ...-+.||.+++=+-......+.. .
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~-~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~ 144 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAK-YIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSV 144 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBS-EEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSH
T ss_pred HHHHHHHHHHHHHHHHhCCC-ceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhH
Confidence 23445566667666433 4555544 1110000 00 0000 0 1 444477888888766555443221 3
Q ss_pred HHHHHHHH
Q psy15247 156 EDYQLAQS 163 (203)
Q Consensus 156 ~Ey~~~~~ 163 (203)
+++..+.+
T Consensus 145 ~~~~~~l~ 152 (213)
T PF01261_consen 145 EEIYRLLE 152 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56655554
No 83
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=46.95 E-value=19 Score=22.19 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.9
Q ss_pred hCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHH
Q psy15247 135 KDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQF 171 (203)
Q Consensus 135 ~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l 171 (203)
++.+.|..+.+.-++ +.|..||..+.. .|+|.+++
T Consensus 10 ~H~~Hv~~d~~~g~f--~glP~eW~~ll~~sgis~~e~ 45 (46)
T cd01093 10 KHRVHVGFDPQTGEF--TGLPEEWQRLLKSSGITKEEQ 45 (46)
T ss_pred eeeeEeeECCCCCcc--cCCCHHHHHHHHHcCCCHHHc
Confidence 455667777755444 788899999999 99999875
No 84
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=45.73 E-value=1.6e+02 Score=25.59 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHhCCCcEEEcCCCCc-----CcCCChHHHHHHHHH-cCCCHH-----HHHHHHHHHHHHcC
Q psy15247 131 QKFAKDNANFSLNSDDPT-----LTGRYLNEDYQLAQS-WGFTRE-----QFKIINLNAAEASF 183 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~-----~f~t~Ls~Ey~~~~~-~~l~~~-----~l~~l~~nai~~sF 183 (203)
+.|+++||+|+++||.+. ....++-+++..+.. .+++.. -++....|+.++..
T Consensus 293 ~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg 356 (398)
T cd01293 293 KELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQLGTPEDLALALDLITGNAARALG 356 (398)
T ss_pred HHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHhcChhhhhhcC
Confidence 789999999999999742 222467777776666 776332 33334455555443
No 85
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.38 E-value=1.8e+02 Score=24.27 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=55.5
Q ss_pred HHHHHHCCceEEEEccC--ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEE-eecCCCCcccHHHHHH
Q psy15247 22 IEDCSKNNVAYVEVRYM--PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSIL-SCATKWPVDTVPDTLR 98 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~--P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~-~~~R~~~~e~a~~~~~ 98 (203)
++.+.+-|+.++-+-++ +...... -+.+.++.++.+.+.++.+++. |+.+.+-+ ...| .+++...+.++
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~------~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~-~~~~~~~~~~~ 146 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHK------LGKDRAWVLDQLRRLVGRAKDR-GLFVSVGAEDASR-ADPDFLIEFAE 146 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHH------hCCCHHHHHHHHHHHHHHHHHC-CCeEEEeeccCCC-CCHHHHHHHHH
Confidence 44555667776666553 3222222 2578999999999999888765 66655322 2223 35667777777
Q ss_pred HHHhhCCCceEEEeCCCCC-C
Q psy15247 99 LAQNCTHYGVVGIDLLSIQ-P 118 (203)
Q Consensus 99 ~a~~~~~~~vvG~dL~G~E-p 118 (203)
.+.+...+.|.=-|-.|-- |
T Consensus 147 ~~~~~G~~~i~l~DT~G~~~P 167 (259)
T cd07939 147 VAQEAGADRLRFADTVGILDP 167 (259)
T ss_pred HHHHCCCCEEEeCCCCCCCCH
Confidence 7776655556555777765 5
No 86
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=45.36 E-value=1.5e+02 Score=26.98 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.++++++.. -||-++ |...+|.+ -++++-+.++.++++++++++|-..-+.+-+
T Consensus 157 sp~~~a~~~y~~~~----GGvD~IKDDE~l~~q~~------------~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-- 218 (406)
T cd08207 157 TPEETAALVRQLAA----AGIDFIKDDELLANPPY------------SPLDERVRAVMRVINDHAQRTGRKVMYAFNI-- 218 (406)
T ss_pred CHHHHHHHHHHHHh----CCCCcccccccCCCCCC------------CcHHHHHHHHHHHHHHHHHhhCCcceEEEec--
Confidence 77888877776654 444443 66666543 3678899999999999999988654444433
Q ss_pred CCCcccHHHHHHHHHhhC
Q psy15247 87 KWPVDTVPDTLRLAQNCT 104 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~~ 104 (203)
+-+.++..+..+.+.+.-
T Consensus 219 T~~~~em~~ra~~~~~~G 236 (406)
T cd08207 219 TDDIDEMRRNHDLVVEAG 236 (406)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 344667777777777653
No 87
>PRK04143 hypothetical protein; Provisional
Probab=44.93 E-value=98 Score=26.51 Aligned_cols=68 Identities=12% Similarity=-0.049 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
..+.++.+.+..++-+.+.|++-+ .-|...+.. .|++.++..+..++++.++-++.+-..++|+++.-
T Consensus 181 ~~~~L~~cy~s~L~~A~~~~~kSI---AfP~IsTGi------~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~vf~ 248 (264)
T PRK04143 181 RADLLASCYRSCLKLAEKAGLKSI---AFCCISTGV------FGFPKEEAAEIAIKTVLSWLKENPSKLKVVFNVFT 248 (264)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEE---EeccccCCC------CCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 467788888888988878888633 125554443 47999999999999999998876644677777654
No 88
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=44.83 E-value=54 Score=31.02 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=38.3
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHHc-----------CCCHHH-HHHHHHHHHHHcCC
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSW-----------GFTREQ-FKIINLNAAEASFQ 184 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~~-----------~l~~~~-l~~l~~nai~~sF~ 184 (203)
+| +.|+++|++|+-+||-|----.+...=|..+... -+|..+ |+...+||.-++|.
T Consensus 418 ~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~ 486 (535)
T COG1574 418 YPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAVTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGA 486 (535)
T ss_pred CcHHHHHHCCCeEeccCCCCCCCCChHHHHHHHHcCCCCCCCCCccccccCHHHHHHHHhhhhHHhhhc
Confidence 67 9999999999999999973333433333332211 266665 66777888888877
No 89
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.80 E-value=2.1e+02 Score=25.62 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHCCceEEEEccCccc-hhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEE-eecCCCCcccHHHHHH
Q psy15247 21 FIEDCSKNNVAYVEVRYMPHK-LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSIL-SCATKWPVDTVPDTLR 98 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~~P~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~-~~~R~~~~e~a~~~~~ 98 (203)
-++.+.+-|+..+-+.++... |.... -+.+.+++++.+.+.++.++. .|..+.+-. ...|. +++...++++
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~-----~~~s~~~~l~~~~~~v~~a~~-~G~~v~~~~ed~~r~-~~~~l~~~~~ 152 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHK-----LKKTREEVLERMVEAVEYAKD-HGLYVSFSAEDASRT-DLDFLIEFAK 152 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHH-CCCeEEEEeccCCCC-CHHHHHHHHH
Confidence 355566678888777765221 22211 258999999999999998765 476665543 34453 5667777888
Q ss_pred HHHhhCCCceEEEeCCCCC
Q psy15247 99 LAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 99 ~a~~~~~~~vvG~dL~G~E 117 (203)
.+.+...+.|+=-|-.|.-
T Consensus 153 ~~~~~Ga~~I~l~DT~G~~ 171 (378)
T PRK11858 153 AAEEAGADRVRFCDTVGIL 171 (378)
T ss_pred HHHhCCCCEEEEeccCCCC
Confidence 7776654555555766654
No 90
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=44.64 E-value=1.1e+02 Score=26.04 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.8
Q ss_pred HHHHHCCceEEEEccC
Q psy15247 23 EDCSKNNVAYVEVRYM 38 (203)
Q Consensus 23 ~~~~~dgV~Y~Elr~~ 38 (203)
.+....||||+|+|..
T Consensus 48 ~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 48 TDQLDLGARFLELDVH 63 (267)
T ss_pred HHHHhhCCcEEEEeee
Confidence 3445699999999985
No 91
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=44.61 E-value=87 Score=27.19 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=25.3
Q ss_pred HHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHH
Q psy15247 22 IEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLK 68 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 68 (203)
+.+....||+|++||..-..+..-| ...+.+++++++.+.+=++
T Consensus 62 I~~QL~~GiRyfDiRv~~~~~~~HG---~~~~~~~~dvL~~i~~FL~ 105 (285)
T cd08619 62 IYNQLCSGARVLDIRVQEDRRVCHG---CLKTYPVDVVLNDIKRFLS 105 (285)
T ss_pred HHHHHhCCceEEEEEecCCeEEECC---CcCCCcHHHHHHHHHHHHH
Confidence 4566679999999998743322111 0113456666555555444
No 92
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=43.99 E-value=21 Score=23.93 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKIIN 175 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~~l~ 175 (203)
..++...||.+..+| -+.-..|++++...++ .|++.+++.+=.
T Consensus 10 ~~WI~e~V~~~~~~d--~is~~~La~kl~adA~a~Gi~~~ei~eEv 53 (64)
T PF05589_consen 10 DSWIAENVPDTPKAD--IISAAELAEKLFADAEAAGIPREEIEEEV 53 (64)
T ss_pred HHHHHhcCCCccccc--hhhHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 578899999998888 3555679999999888 999999876543
No 93
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=43.38 E-value=93 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHHCCceEEEEccCcc
Q psy15247 22 IEDCSKNNVAYVEVRYMPH 40 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~P~ 40 (203)
+.+....||||+|||..+.
T Consensus 43 i~~QL~~GiR~~dlr~~~~ 61 (271)
T cd08557 43 ITDQLDAGVRYLDLRVAYD 61 (271)
T ss_pred HHHHHhcCceEEEEEeeee
Confidence 4456669999999998754
No 94
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=43.08 E-value=55 Score=28.77 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHHcCCCHHHHHH-HHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKI-INLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~~~l~~~~l~~-l~~nai~~sF~~ 185 (203)
+.++++|++++|+||.... ..+...+.++...+++..+..+ ...|+.+..-++
T Consensus 240 ~~ll~~Gv~~al~SD~~p~--sll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~ 293 (325)
T cd01306 240 RELAAHGLLDILSSDYVPA--SLLHAAFRLADLGGWSLPEAVALVSANPARAVGLT 293 (325)
T ss_pred HHHHHCCCeEEEEcCCCcH--hHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCC
Confidence 8999999999999999532 2233333333337899888555 556777666554
No 95
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=43.08 E-value=2e+02 Score=24.15 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHH-HHHHhhCCCceEEEeCCCCCCCccccccccccc-
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTL-RLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN- 130 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~-~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p- 130 (203)
++....+++-+++... .+-++.+|++-+..... |+.....+ +....+.++.||=++=.-.-| -|
T Consensus 12 niGts~v~dlllDErA---dRedi~vrVvgsgaKM~-Pe~veaav~~~~e~~~pDfvi~isPNpaaP----------GP~ 77 (277)
T COG1927 12 NIGTSPVVDLLLDERA---DREDIEVRVVGSGAKMD-PECVEAAVTEMLEEFNPDFVIYISPNPAAP----------GPK 77 (277)
T ss_pred ccchHHHHHHHHHhhc---ccCCceEEEeccccccC-hHHHHHHHHHHHHhcCCCEEEEeCCCCCCC----------Cch
Confidence 5777778888887653 23379999998888754 44444444 445567677666554221101 13
Q ss_pred --H-HHHhCCCcEEEcCCCCcCc
Q psy15247 131 --Q-KFAKDNANFSLNSDDPTLT 150 (203)
Q Consensus 131 --~-~l~~~Gv~vsinTDDp~~f 150 (203)
+ .|-+.|+|+.|-+|-|++-
T Consensus 78 kARE~l~~s~~PaiiigDaPg~~ 100 (277)
T COG1927 78 KAREILSDSDVPAIIIGDAPGLK 100 (277)
T ss_pred HHHHHHhhcCCCEEEecCCccch
Confidence 3 3445799999999999654
No 96
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=42.76 E-value=61 Score=28.67 Aligned_cols=53 Identities=15% Similarity=-0.048 Sum_probs=34.4
Q ss_pred HHHHhCCC-cEEEcCCCCcCcC-----CChHHHHHHHHHcCCCHHHHHHH-HHHHHHHcC
Q psy15247 131 QKFAKDNA-NFSLNSDDPTLTG-----RYLNEDYQLAQSWGFTREQFKII-NLNAAEASF 183 (203)
Q Consensus 131 ~~l~~~Gv-~vsinTDDp~~f~-----t~Ls~Ey~~~~~~~l~~~~l~~l-~~nai~~sF 183 (203)
..++++|+ +++|+||++.--. ..|...+.++...+++.+++.++ ..|+.+..=
T Consensus 260 ~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g 319 (379)
T PRK12394 260 RRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYLALGMALEDVINACTHTPAVLMG 319 (379)
T ss_pred HHHHHCCCCceEEECCCCCCCcccCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 78899995 9999999986321 23333333333368998887665 566655543
No 97
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=42.31 E-value=64 Score=29.08 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCCcEEEcCCCCcCc----CCChHHHHHHHHHcCCCHHHHHH-HHHHHHHHcCC
Q psy15247 136 DNANFSLNSDDPTLT----GRYLNEDYQLAQSWGFTREQFKI-INLNAAEASFQ 184 (203)
Q Consensus 136 ~Gv~vsinTDDp~~f----~t~Ls~Ey~~~~~~~l~~~~l~~-l~~nai~~sF~ 184 (203)
.|.+++++||+|... ...+......+...|++.++..+ ...|+.+.-.+
T Consensus 201 ~~~~i~l~TD~~~~~~~~~~g~~~~v~r~a~~~g~s~~eal~~aT~n~A~~~gl 254 (422)
T cd01295 201 NFRRFMFCTDDVHPDDLLSEGHLDYIVRRAIEAGIPPEDAIQMATINPAECYGL 254 (422)
T ss_pred cCCeEEEEcCCCCchhhhhcchHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCC
Confidence 479999999998432 13344444333337899888665 55788777665
No 98
>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=42.07 E-value=30 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=22.2
Q ss_pred HHHHHHHCCceEEEEcc---CccchhhhhhhhccCCCCHHHHH
Q psy15247 21 FIEDCSKNNVAYVEVRY---MPHKLLGTELYQMLGYEGLKETV 60 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~---~P~~~~~~~~~~~~~~~~~~~~~ 60 (203)
-++.+++-||.|+|+|. +|.. .. |++.+++.
T Consensus 315 ~~~aL~~~GiEYiEvRslDiNPF~--pi-------GIs~~q~~ 348 (518)
T COG2918 315 PSDALLRRGIEYIEVRSLDINPFS--PI-------GISEDQAR 348 (518)
T ss_pred hHHHHHhcCceEEEEEeeccCCCC--cC-------CCCHHHHH
Confidence 45678899999999994 3543 32 68887653
No 99
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=41.92 E-value=18 Score=30.25 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.8
Q ss_pred HHHHhCCCcEEEcCCCC
Q psy15247 131 QKFAKDNANFSLNSDDP 147 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp 147 (203)
+.+.+.|+||||+||-=
T Consensus 223 ~~~~~~g~~itlgSDAH 239 (253)
T TIGR01856 223 NLAKELGIPLVLGSDAH 239 (253)
T ss_pred HHHHHcCCCEEecCCCC
Confidence 78888999999999943
No 100
>PRK00431 RNase III inhibitor; Provisional
Probab=41.07 E-value=1.3e+02 Score=23.58 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ 75 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (203)
+++.++...+.+++.+.+.|++-+ .-|...+.. .|++.++..+.+++++.++....+
T Consensus 93 ~~~~L~~~~~~~L~~a~~~~~~sI---a~P~lgtG~------~g~p~~~~A~~~~~~i~~f~~~~~ 149 (177)
T PRK00431 93 EAELLASAYRNSLRLAAELGLRSI---AFPAISTGV------YGYPLEDAARIAVKTVREFLTRHK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceE---EECccccCc------cCCCHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999988886522 125555543 479999999999999998855443
No 101
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=40.20 E-value=62 Score=28.88 Aligned_cols=52 Identities=19% Similarity=-0.000 Sum_probs=34.3
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHH-HHHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFK-IINLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~-~l~~nai~~sF~~ 185 (203)
+.++++|++++|+||.... ++......+.. .+++..++. ..+.|+.+.--++
T Consensus 291 ~~~~~~Gv~~~lgSD~~p~---~~~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~ 344 (383)
T PRK15446 291 LDLAAAGLLDILSSDYYPA---SLLDAAFRLADDGGLDLPQAVALVTANPARAAGLD 344 (383)
T ss_pred HHHHHCCCcEEEEcCCChh---hHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 6789999999999998321 22222333344 789988854 5566777665553
No 102
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=40.17 E-value=57 Score=30.01 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCceE-EEEc
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAY-VEVR 36 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y-~Elr 36 (203)
|+++++..+...+.++.+.||.- ++++
T Consensus 101 t~e~~~~~a~~~~~e~L~~GvTt~~d~~ 128 (488)
T PRK06151 101 TPEELAFQKRYAFAQLLRNGITTAMPIA 128 (488)
T ss_pred CHHHHHHHHHHHHHHHHhcCeeEEehhh
Confidence 78888899999999999999976 6665
No 103
>PF13918 PLDc_3: PLD-like domain
Probab=39.66 E-value=46 Score=26.84 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.7
Q ss_pred HCCceEEEEc-cCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcc
Q psy15247 27 KNNVAYVEVR-YMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVD 91 (203)
Q Consensus 27 ~dgV~Y~Elr-~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e 91 (203)
+..-+|++++ +.|..... ....|+-.+-+++++|.=+-||++|++++.-++-++.
T Consensus 94 A~~fI~IsVMdY~P~~~~~----------~~~~YWP~ID~ALR~AA~~R~V~VRlLIS~W~ht~p~ 149 (177)
T PF13918_consen 94 AKKFIYISVMDYLPTSRYS----------KPNRYWPVIDDALRRAAIERGVKVRLLISCWKHTDPS 149 (177)
T ss_pred HhheEEEEEeecCCeeecC----------CCCCcchhHHHHHHHHHHHcCCeEEEEEeecCCCChh
Confidence 4567899988 55755322 2345777888888888766699999999999987763
No 104
>PLN02826 dihydroorotate dehydrogenase
Probab=39.56 E-value=2.9e+02 Score=25.20 Aligned_cols=90 Identities=9% Similarity=0.033 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhh----cCceEEEEEeec
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDE----FQVKSKSILSCA 85 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~i~~rlI~~~~ 85 (203)
.+|+..++..+- +.+-|+|+=+| |.....+ .+...+.+..+++++++..+. ....+-+++=+.
T Consensus 203 ~~Dy~~~~~~~~-----~~aDylelNiScPNtpglr-------~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKla 270 (409)
T PLN02826 203 AADYVQGVRALS-----QYADYLVINVSSPNTPGLR-------KLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIA 270 (409)
T ss_pred HHHHHHHHHHHh-----hhCCEEEEECCCCCCCCcc-------cccChHHHHHHHHHHHHHHHHhhhccccCCceEEecC
Confidence 456666555442 35789999988 6532111 233345556666666554332 122344455444
Q ss_pred CCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 86 TKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 86 R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
=..+.++..++++.+.+..-++|+.++
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISN 297 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 455555677778877777667788776
No 105
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=39.07 E-value=2.3e+02 Score=25.94 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeec
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCA 85 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~ 85 (203)
-+++.+.++++++.. -|+-++ |...+|.. -++++-+.++.++++++++++|-...+.+-+
T Consensus 145 lsp~~~a~~~y~~~~----GGiD~IKDDE~l~~q~~------------~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni- 207 (414)
T cd08206 145 LSPKEYARVVYEALR----GGLDFVKDDENQNSQPF------------MRFEDRILFVAEAMDKAEAETGEAKGHYLNI- 207 (414)
T ss_pred CCHHHHHHHHHHHHh----cCCcccccCccCCCCCC------------CcHHHHHHHHHHHHHHHHHhhCCcceEEecc-
Confidence 377888888776654 444433 55555433 3678899999999999999988654444333
Q ss_pred CCCC-cccHHHHHHHHHhhC
Q psy15247 86 TKWP-VDTVPDTLRLAQNCT 104 (203)
Q Consensus 86 R~~~-~e~a~~~~~~a~~~~ 104 (203)
+-+ .++..+..+.+++.-
T Consensus 208 -T~~~~~em~~ra~~~~~~G 226 (414)
T cd08206 208 -TADTPEEMIKRAEFAKELG 226 (414)
T ss_pred -CCCcHHHHHHHHHHHHHhC
Confidence 334 666777777777653
No 106
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.66 E-value=2.2e+02 Score=23.32 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCceEEEEccCcc-chhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEE-eecCC-CCcccHHH
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPH-KLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSIL-SCATK-WPVDTVPD 95 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~-~~~R~-~~~e~a~~ 95 (203)
.+.++.+.+-|+..+=+-.+.. .|... ..+.+.++.++.+.+.++.+++ .|+.+.+-+ .+.|. .+++...+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~-----~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~ 150 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRK-----NLNKSREEDLENAEEAIEAAKE-AGLEVEGSLEDAFGCKTDPEYVLE 150 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeecCCCCCHHHHHH
Confidence 4456667777777766666532 12111 1246788899999999988775 588888877 56662 56777888
Q ss_pred HHHHHHhhCCCceEEEeCCCCC
Q psy15247 96 TLRLAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 96 ~~~~a~~~~~~~vvG~dL~G~E 117 (203)
.++.+.+...+.|.=.|..|.-
T Consensus 151 ~~~~~~~~g~~~i~l~Dt~G~~ 172 (265)
T cd03174 151 VAKALEEAGADEISLKDTVGLA 172 (265)
T ss_pred HHHHHHHcCCCEEEechhcCCc
Confidence 8888888765656655777765
No 107
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.63 E-value=2e+02 Score=25.52 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 52 GYEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
++.+.+++.+++... ++ .| +.+-+|+.+. ..+.+...+.++.+.+..++.|.-+.|.
T Consensus 134 R~~~~~~~~~ai~~~----~~-~g~~~v~~Dli~GlP-gqt~~~~~~~l~~~~~l~~~~is~y~l~ 193 (370)
T PRK06294 134 RTHSSSKAIDAVQEC----SE-HGFSNLSIDLIYGLP-TQSLSDFIVDLHQAITLPITHISLYNLT 193 (370)
T ss_pred CCCCHHHHHHHHHHH----HH-cCCCeEEEEeecCCC-CCCHHHHHHHHHHHHccCCCeEEEeeeE
Confidence 345666666655433 22 34 4444555544 4567788888998888877766555544
No 108
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=38.61 E-value=1.2e+02 Score=20.34 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=32.6
Q ss_pred HHHH-cCCCHHHHHHHHHHHHH-----------------HcCCCHHHHHHHHHHHHhh
Q psy15247 160 LAQS-WGFTREQFKIINLNAAE-----------------ASFQPEHEKKELIKLLESE 199 (203)
Q Consensus 160 ~~~~-~~l~~~~l~~l~~nai~-----------------~sF~~~~~k~~l~~~~~~~ 199 (203)
.+.. .|-|.++++.+...||+ |-=.++++|++++..+.+.
T Consensus 7 I~~nv~g~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 7 IIHNVKGSSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred HHHHccCCCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455 89999999999999998 3447889999999888653
No 109
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=38.29 E-value=91 Score=29.79 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=38.1
Q ss_pred cc-HHHHhCCCcEEEcCCCCcCcC--CChHHHHHHHHH-----cCC----------CHHH-HHHHHHHHHHHcCCCH
Q psy15247 129 YN-QKFAKDNANFSLNSDDPTLTG--RYLNEDYQLAQS-----WGF----------TREQ-FKIINLNAAEASFQPE 186 (203)
Q Consensus 129 ~p-~~l~~~Gv~vsinTDDp~~f~--t~Ls~Ey~~~~~-----~~l----------~~~~-l~~l~~nai~~sF~~~ 186 (203)
++ +.|+++|+.++++||.|.+.. .+.-.-++.+.. .++ +.++ |+....|+....+.++
T Consensus 348 ~a~~~l~daGa~~~~gSD~pv~gr~~~~p~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~ 424 (572)
T PRK13309 348 AAENVLHDMGVISMFSSDSQAMGRVGENWLRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSH 424 (572)
T ss_pred cchhHHHhCCCEEEEcCCCCcccCCcccHHHHHHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCccc
Confidence 45 999999999999999998643 344444555542 121 2222 6667777777776654
No 110
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=38.19 E-value=65 Score=26.78 Aligned_cols=43 Identities=16% Similarity=-0.073 Sum_probs=37.0
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFKI 173 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~~ 173 (203)
.--.+.++|+.|+|+-...++.-=.+|...+.. +|++.++...
T Consensus 160 ~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~~ 203 (216)
T PRK03892 160 QLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAKA 203 (216)
T ss_pred HHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHHH
Confidence 334478999999999999999888899999999 9999998654
No 111
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=38.06 E-value=1.8e+02 Score=24.46 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCceE----EEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccH
Q psy15247 18 AYEFIEDCSKNNVAY----VEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTV 93 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y----~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a 93 (203)
..+.++.+.+-|+.. +| .+|..+..- .++.+.+++++++....+ ....+.+.+|+.. ..+.++.
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E--~~~~~~~~i-----~~~~s~~~~~~ai~~l~~---~Gi~v~~~~i~Gl--~et~~d~ 189 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLD--TSQEFYSNI-----ISTHTYDDRVDTLENAKK---AGLKVCSGGIFGL--GETVEDR 189 (296)
T ss_pred CHHHHHHHHHcCCCEEEEccc--CCHHHHhhc-----cCCCCHHHHHHHHHHHHH---cCCEEEEeEEEeC--CCCHHHH
Confidence 456677777777765 45 455544331 124577777766655432 1122445666654 4466677
Q ss_pred HHHHHHHHhhCCC
Q psy15247 94 PDTLRLAQNCTHY 106 (203)
Q Consensus 94 ~~~~~~a~~~~~~ 106 (203)
.++++.+.+..++
T Consensus 190 ~~~~~~l~~l~~~ 202 (296)
T TIGR00433 190 IGLALALANLPPE 202 (296)
T ss_pred HHHHHHHHhCCCC
Confidence 7777777666443
No 112
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=37.69 E-value=1.9e+02 Score=25.47 Aligned_cols=55 Identities=5% Similarity=-0.019 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhcCc---eEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 52 GYEGLKETVRRVYQGLKRGEDEFQV---KSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~i---~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
++.+.+++.+++... ++ .|+ .+-+|+.+. ..+.++..++++.+.+..++.|.-+.
T Consensus 131 r~~~~~~~~~~i~~l----~~-~g~~~v~~dli~GlP-gqt~~~~~~~l~~~~~l~~~~i~~y~ 188 (377)
T PRK08599 131 RTHNEEDVYEAIANA----KK-AGFDNISIDLIYALP-GQTIEDFKESLAKALALDIPHYSAYS 188 (377)
T ss_pred CCCCHHHHHHHHHHH----HH-cCCCcEEEeeecCCC-CCCHHHHHHHHHHHHccCCCEEeeec
Confidence 345666666554433 22 343 344444444 45677888889988887666554443
No 113
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=37.61 E-value=3e+02 Score=24.62 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYM 38 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~ 38 (203)
++++++..+...+..+.+.|+.. .++.
T Consensus 97 ~~e~~~~~a~~~~~e~l~~G~t~--~~~~ 123 (421)
T COG0402 97 TEEDLYARALLALLEMLRNGTTT--ARTH 123 (421)
T ss_pred CHHHHHHHHHHHHHHHHhcCccc--cccc
Confidence 88999999999999999999998 4443
No 114
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=37.52 E-value=2.3e+02 Score=25.77 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHH---HHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeec
Q psy15247 9 GDLDAVERFAYEFIE---DCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCA 85 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~---~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~ 85 (203)
-+++.+.++++++.. |+.+|- |.-.+|.. -++++=+.++.++++++++++|-..-+.+-+
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDD----E~l~~q~~------------~p~~eRv~a~~~a~~~a~~eTG~~~~ya~Ni- 199 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDD----EILFDNPL------------APALERIRACRPVLQEVYEQTGRRTLYAVNL- 199 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCccccc----ccCCCCCC------------CCHHHHHHHHHHHHHHHHHhhCCcceEEEEc-
Confidence 377888887776655 444332 55555433 3678899999999999999988644444333
Q ss_pred CCCCcccHHHHHHHHHhhC
Q psy15247 86 TKWPVDTVPDTLRLAQNCT 104 (203)
Q Consensus 86 R~~~~e~a~~~~~~a~~~~ 104 (203)
+-+.++..+..+.+.+.-
T Consensus 200 -T~~~~em~~ra~~~~~~G 217 (391)
T cd08209 200 -TGPVFTLKEKARRLVEAG 217 (391)
T ss_pred -CCCHHHHHHHHHHHHHhC
Confidence 344667777777777653
No 115
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=37.41 E-value=2.1e+02 Score=22.76 Aligned_cols=74 Identities=7% Similarity=-0.004 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCCCCccccccccccc--HHHHhC
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN--QKFAKD 136 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p--~~l~~~ 136 (203)
+...+..++.++.+++|..+.+..+ .. +++...+.++..+....++++........ -+ ..+.++
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~--~~-~~~~~~~~~~~l~~~~vdgiii~~~~~~~-----------~~~~~~~~~~ 78 (266)
T cd06282 13 VFAECVQGIQEEARAAGYSLLLATT--DY-DAEREADAVETLLRQRVDGLILTVADAAT-----------SPALDLLDAE 78 (266)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEeeC--CC-CHHHHHHHHHHHHhcCCCEEEEecCCCCc-----------hHHHHHHhhC
Confidence 4556777777777777766655432 32 33334455655555555666643322111 01 455677
Q ss_pred CCcE-EEcCCC
Q psy15247 137 NANF-SLNSDD 146 (203)
Q Consensus 137 Gv~v-sinTDD 146 (203)
|+|+ +++++.
T Consensus 79 ~ipvV~~~~~~ 89 (266)
T cd06282 79 RVPYVLAYNDP 89 (266)
T ss_pred CCCEEEEeccC
Confidence 7774 455543
No 116
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=37.28 E-value=94 Score=27.67 Aligned_cols=53 Identities=25% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHhCCCcEEEcCCCCcCcCCChHHHHHHHHH-cCCCHHHHH-HHHHHHHHHcCCC
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQS-WGFTREQFK-IINLNAAEASFQP 185 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t~Ls~Ey~~~~~-~~l~~~~l~-~l~~nai~~sF~~ 185 (203)
..+++.|+.++++||+.. ...+...+..+.. .+++..++. .+..|+.+...++
T Consensus 286 ~~~~~~G~~~~l~SD~~p--~~~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~ 340 (376)
T TIGR02318 286 RELAHEGLLDVLASDYVP--ASLLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLS 340 (376)
T ss_pred HHHHHCCCcEEEEcCCCc--HHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 788899999999999943 2334444544444 588888755 5666777777664
No 117
>PF10901 DUF2690: Protein of unknown function (DUF2690); InterPro: IPR021224 This bacterial family of proteins has no known function.
Probab=36.76 E-value=21 Score=26.11 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=11.9
Q ss_pred CCceEEEEccCccch
Q psy15247 28 NNVAYVEVRYMPHKL 42 (203)
Q Consensus 28 dgV~Y~Elr~~P~~~ 42 (203)
-++.++|||+||.=.
T Consensus 28 ~~~~~VELRyS~~C~ 42 (103)
T PF10901_consen 28 VGGGTVELRYSPTCG 42 (103)
T ss_pred ccceEEEEEECChhc
Confidence 467899999998643
No 118
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=36.75 E-value=86 Score=27.52 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=35.8
Q ss_pred HHHHhCCC---cEEEcCCC--Cc-CcC-------------CChHHHHHHHHH-cCCCHHHHHHH-HHHHHHHc
Q psy15247 131 QKFAKDNA---NFSLNSDD--PT-LTG-------------RYLNEDYQLAQS-WGFTREQFKII-NLNAAEAS 182 (203)
Q Consensus 131 ~~l~~~Gv---~vsinTDD--p~-~f~-------------t~Ls~Ey~~~~~-~~l~~~~l~~l-~~nai~~s 182 (203)
..+++.|+ +|+++||- +. .+. .++..+...+.. .+++.+++.++ ..|+.+.-
T Consensus 268 ~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~l 340 (388)
T PRK10657 268 KRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFL 340 (388)
T ss_pred HHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 68999999 89999993 21 111 247777777776 89999886655 45555543
No 119
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=36.38 E-value=12 Score=27.33 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHh
Q psy15247 8 RGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGED 72 (203)
Q Consensus 8 ~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 72 (203)
++++|++..++.+++|. ++||-.+.|+...=.. -++.++++++|.+-+...+-
T Consensus 30 LN~pEAvAlIs~~v~E~-aRdG~svaelm~~g~~-----------~L~~~dVm~GV~~mi~~vqV 82 (102)
T TIGR00193 30 LNYPEAVAYISAHIMEG-ARDGKKVAELMQYGRT-----------LLTPDDVMEGVAEMLHEVQI 82 (102)
T ss_pred cCcHHHHHHHHHHHHHH-hhcCCcHHHHHHHHHh-----------hCCHHhcccCHHHhhcceeE
Confidence 45899999999988887 7889888888764211 37889999999988876543
No 120
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=36.29 E-value=1.3e+02 Score=20.14 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHH-cCCCHHHHHHHHHHHHH-----------------HcCCCHHHHHHHHHHHHhhh
Q psy15247 160 LAQS-WGFTREQFKIINLNAAE-----------------ASFQPEHEKKELIKLLESEY 200 (203)
Q Consensus 160 ~~~~-~~l~~~~l~~l~~nai~-----------------~sF~~~~~k~~l~~~~~~~~ 200 (203)
.+.. .|-|.++++.+...||+ |--+++++|++++..+.+..
T Consensus 6 i~~nv~~~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~l 64 (65)
T TIGR03092 6 ILANISNNTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQGV 64 (65)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3455 78999999999999997 33478999999999887653
No 121
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.48 E-value=1.5e+02 Score=25.81 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred HHHHHHHHCCceEEEEccC---ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCc-eEEEEEeecCCCCcccHHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYM---PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV-KSKSILSCATKWPVDTVPD 95 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~---P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i-~~rlI~~~~R~~~~e~a~~ 95 (203)
+.++++.+.|+..+=+-.. |..+..- .++-+++.++ ++++.+. +.|+ .+++-..+.+..+.++..+
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i-----~~~g~~~~vl----~~i~~~~-~~Gi~~v~in~v~~~g~N~~ei~~ 174 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAAL-----TRNGRLERVI----AGIDAAK-AAGFERIKLNAVILRGQNDDEVLD 174 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhh-----cCCCCHHHHH----HHHHHHH-HcCCCceEEEEEEECCCCHHHHHH
Confidence 5677788888888777654 2222111 1123455444 4454443 3465 5666556677777788888
Q ss_pred HHHHHHhhC
Q psy15247 96 TLRLAQNCT 104 (203)
Q Consensus 96 ~~~~a~~~~ 104 (203)
+++++.+..
T Consensus 175 ~~~~~~~~g 183 (329)
T PRK13361 175 LVEFCRERG 183 (329)
T ss_pred HHHHHHhcC
Confidence 999888763
No 122
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=35.36 E-value=1e+02 Score=24.91 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHhCC--CcEEEcCCCCcCc----C------CChHHHHHHHHH-cCCCHHHHHHHH-HHHHH
Q psy15247 131 QKFAKDN--ANFSLNSDDPTLT----G------RYLNEDYQLAQS-WGFTREQFKIIN-LNAAE 180 (203)
Q Consensus 131 ~~l~~~G--v~vsinTDDp~~f----~------t~Ls~Ey~~~~~-~~l~~~~l~~l~-~nai~ 180 (203)
+.+++.. =++.++||.|-+. . ..+..-+..+.. .|++.+++.++. .|+.+
T Consensus 185 ~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~ 248 (252)
T TIGR00010 185 REVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKR 248 (252)
T ss_pred HHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 4455544 2789999998532 1 133333444566 899999988865 55544
No 123
>PRK08123 histidinol-phosphatase; Reviewed
Probab=35.08 E-value=27 Score=29.56 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=14.4
Q ss_pred HHHHhCCCcEEEcCCC
Q psy15247 131 QKFAKDNANFSLNSDD 146 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDD 146 (203)
+.+.+.|+||||+||-
T Consensus 236 ~~~~e~g~~itlgSDA 251 (270)
T PRK08123 236 TLAKKLGIPLVYGSDA 251 (270)
T ss_pred HHHHHcCCCEEEeCCC
Confidence 8888999999999993
No 124
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.91 E-value=2.4e+02 Score=22.63 Aligned_cols=75 Identities=11% Similarity=-0.060 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCCCCccccccccccc--HHHHh
Q psy15247 58 ETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN--QKFAK 135 (203)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p--~~l~~ 135 (203)
.+...+.+++.++.++.|+.+.+ .... .+++...+.++.+.....++|+......+. . -+ +.+.+
T Consensus 13 ~~~~~~~~g~~~~~~~~g~~~~~--~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~--~--------~~~l~~~~~ 79 (275)
T cd06317 13 SYQTTYNKAFQAAAEEDGVEVIV--LDAN-GDVARQAAQVEDLIAQKVDGIILWPTDGQA--Y--------IPGLRKAKQ 79 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEE--EcCC-cCHHHHHHHHHHHHHcCCCEEEEecCCccc--c--------HHHHHHHHH
Confidence 46677888888877777876544 3333 344455566666666555665554432221 0 12 67788
Q ss_pred CCCcEE-EcCC
Q psy15247 136 DNANFS-LNSD 145 (203)
Q Consensus 136 ~Gv~vs-inTD 145 (203)
+|+||. ++++
T Consensus 80 ~~iPvV~~~~~ 90 (275)
T cd06317 80 AGIPVVITNSN 90 (275)
T ss_pred CCCcEEEeCCC
Confidence 999974 4443
No 125
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=34.40 E-value=2.2e+02 Score=24.69 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=40.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHCCceEEE-------EccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCc
Q psy15247 5 AFLRGDLDAVERFAYEFIEDCSKNNVAYVE-------VRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV 76 (203)
Q Consensus 5 ~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~E-------lr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 76 (203)
++..-+++.+.+++..+-+-+.+-|+.|+= -|+||+.+. |+..++=+.. ++++++++|+
T Consensus 23 PCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFq---------G~G~eeGL~i----L~~vk~~~Gl 88 (281)
T PRK12457 23 INVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYR---------GVGLDEGLRI----FEEVKARFGV 88 (281)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCC---------CCCHHHHHHH----HHHHHHHHCC
Confidence 444448999989888888878888998754 377777653 5676555444 4555566664
No 126
>PRK01060 endonuclease IV; Provisional
Probab=33.10 E-value=2.8e+02 Score=22.95 Aligned_cols=48 Identities=4% Similarity=0.000 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCce
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVK 77 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 77 (203)
..+.++.+++-|...+|+... |..+... .++.+ . ++.+++..+++|+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~-------~~~~~-~----~~~lk~~~~~~gl~ 62 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRK-------PLEEL-N----IEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCC-------CCCHH-H----HHHHHHHHHHcCCC
Confidence 557889999999999999987 5544321 23433 2 33355555566765
No 127
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=32.61 E-value=34 Score=29.15 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHH-HhhCCCceEEEeCCCCCCCccccccccccc-
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLA-QNCTHYGVVGIDLLSIQPETGPHGSVYSYN- 130 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a-~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p- 130 (203)
++....+++-+++.+ + .+-+|.+|.+-+...- +++++.+.+... ..+.|+.++-++=.+.-| =|
T Consensus 11 Nig~s~~idl~LDEr--A-dRedI~vrv~gsGaKm-~pe~~e~~~~~~~~~~~pdf~I~isPN~~~P----------GP~ 76 (276)
T PF01993_consen 11 NIGTSVVIDLLLDER--A-DREDIDVRVVGSGAKM-GPEDVEEVVTKMLKEWDPDFVIVISPNAAAP----------GPT 76 (276)
T ss_dssp --HHHHHTTGGGSTT--S---SSEEEEEEEEET---SHHHHHHHHHHHHHHH--SEEEEE-S-TTSH----------HHH
T ss_pred ccchHHHHHHHHHhh--h-ccCCceEEEeccCCCC-CHHHHHHHHHHHHHhhCCCEEEEECCCCCCC----------CcH
Confidence 455555665555543 2 2347999999988874 566666666554 477788776665433310 13
Q ss_pred --H-HHHhCCCcEEEcCCCCcCc
Q psy15247 131 --Q-KFAKDNANFSLNSDDPTLT 150 (203)
Q Consensus 131 --~-~l~~~Gv~vsinTDDp~~f 150 (203)
+ .|-+.|+|+.|=||.|+.=
T Consensus 77 ~ARE~l~~~~iP~IvI~D~p~~k 99 (276)
T PF01993_consen 77 KAREMLSAKGIPCIVISDAPTKK 99 (276)
T ss_dssp HHHHHHHHSSS-EEEEEEGGGGG
T ss_pred HHHHHHHhCCCCEEEEcCCCchh
Confidence 4 4447999999999999765
No 128
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.36 E-value=2.7e+02 Score=24.79 Aligned_cols=71 Identities=10% Similarity=-0.010 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEccCccchh---hhhhhh-ccCCCCHHHHHHHHHHHHHHhHhhc--CceEEEEEe
Q psy15247 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLL---GTELYQ-MLGYEGLKETVRRVYQGLKRGEDEF--QVKSKSILS 83 (203)
Q Consensus 12 ~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~---~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~i~~rlI~~ 83 (203)
.|+.++..+-++++++.|++|+.|=- |.... ..+... ...+.+.++.++..++.++++-+.. ++.+++=+|
T Consensus 166 ~dlA~al~~Ei~~L~~aG~~~IQiDe-p~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC 242 (368)
T PRK06520 166 DDLAKTWRDAIKAFYDAGCRYLQLDD-TVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVC 242 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecC-cchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEee
Confidence 57788888889999999999976542 32211 000000 0113466666766677777776655 344444455
No 129
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=32.17 E-value=1.5e+02 Score=24.90 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCceEEEEccCccchhh---hhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHH
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHKLLG---TELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPD 95 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~ 95 (203)
.+.++++...|++++|+-.-+..... .|-..-...+++++++++|.+-.= ....|+ +|+++-=|++.+.-..
T Consensus 32 ~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlts~i~f~dv~~~I~~~aF-~~s~yP----vIlslE~Hcs~~qQ~~ 106 (229)
T cd08592 32 LEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLTSKIKFMDVLKTIKEHAF-VTSEYP----VILSIENHCSLPQQRN 106 (229)
T ss_pred HHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCCcCHHHHHHHHHHHhc-cCCCCC----EEEEEecCCCHHHHHH
Confidence 35667788899999999865432100 000000124788888877765311 112344 4899998998876666
Q ss_pred HHHHHHhh
Q psy15247 96 TLRLAQNC 103 (203)
Q Consensus 96 ~~~~a~~~ 103 (203)
+++.....
T Consensus 107 ma~il~~~ 114 (229)
T cd08592 107 MAQAFKEV 114 (229)
T ss_pred HHHHHHHH
Confidence 66555443
No 130
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=31.80 E-value=1.8e+02 Score=24.67 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=12.7
Q ss_pred HHHHCCceEEEEccCc
Q psy15247 24 DCSKNNVAYVEVRYMP 39 (203)
Q Consensus 24 ~~~~dgV~Y~Elr~~P 39 (203)
+....||||.+||...
T Consensus 59 ~QL~~GiR~fDlR~~~ 74 (288)
T cd08587 59 DQLEAGIRYFDLRVAY 74 (288)
T ss_pred HHHhhCceEEEEEEee
Confidence 4445899999999874
No 131
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=31.53 E-value=1.2e+02 Score=22.55 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHH
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGL 67 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 67 (203)
.+.+.++...+.+++.+.+.|+.- .+ |...+.. +|++.+++.+.+.+++
T Consensus 83 ~~~~~l~~~~~~~l~~a~~~~~~s----IA~P~igtG~------~g~~~~~~a~i~~~~i 132 (133)
T cd03330 83 SSEESVRKATRAALALADELGIES----VAFPAMGTGV------GGLPKEDVARLMVEVI 132 (133)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCE----EEECcccccC------CCCCHHHHHHHHHHHh
Confidence 367789999999999888888662 33 6655554 4899999998888765
No 132
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=31.32 E-value=4.3e+02 Score=24.48 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCCCccccc-cccc------cc---------HHHHhCCCcEE--EcCCCCcCcC----CC--------hHH
Q psy15247 107 GVVGIDLLSIQPETGPHG-SVYS------YN---------QKFAKDNANFS--LNSDDPTLTG----RY--------LNE 156 (203)
Q Consensus 107 ~vvG~dL~G~EpE~~gHG-~l~~------~p---------~~l~~~Gv~vs--inTDDp~~f~----t~--------Ls~ 156 (203)
.+||.+++|-| |..-|| ++|- || ..= ..|-||| |.+|-.+=|- +. +++
T Consensus 122 ~FvG~GVSGGE-eGA~~GPSiMpGG~~eay~~v~pil~~IaAk-~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 122 LFVGMGVSGGE-EGARHGPSIMPGGQKEAYELVAPILTKIAAK-VDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred eEEeccccccc-cccccCCCcCCCCCHHHHHHHHHHHHHHHhh-cCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 48999999997 555577 6664 22 111 1267776 6777776553 22 456
Q ss_pred HHHHHHH-cCCCHHHHHHHH
Q psy15247 157 DYQLAQS-WGFTREQFKIIN 175 (203)
Q Consensus 157 Ey~~~~~-~~l~~~~l~~l~ 175 (203)
-|..+.. .|+|.+++.++-
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 6777777 899998876653
No 133
>PRK07328 histidinol-phosphatase; Provisional
Probab=31.30 E-value=34 Score=28.86 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=15.0
Q ss_pred HHHHhCCCcEEEcCCCC
Q psy15247 131 QKFAKDNANFSLNSDDP 147 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp 147 (203)
+.+.+.|+|+||+||-=
T Consensus 215 ~~~~~~g~~itigSDAH 231 (269)
T PRK07328 215 RACRERGIPVVLGSDAH 231 (269)
T ss_pred HHHHHcCCCEEEeCCCC
Confidence 88889999999999943
No 134
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=31.24 E-value=1.5e+02 Score=26.05 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+++.+.+.+ ++.++.+.+.-.+..+-+.+.+.+.++.+.++..+.|||||
T Consensus 37 ~~~~v~~~L----~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG 86 (366)
T PF00465_consen 37 LVDRVLDAL----EEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIG 86 (366)
T ss_dssp HHHHHHHHH----HHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cHHHHHHHH----hhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 444444444 34578776666677777778889999999998888999995
No 135
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=31.01 E-value=2.2e+02 Score=24.38 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=13.6
Q ss_pred HHHHHCCceEEEEccCcc
Q psy15247 23 EDCSKNNVAYVEVRYMPH 40 (203)
Q Consensus 23 ~~~~~dgV~Y~Elr~~P~ 40 (203)
.+....||||+++|....
T Consensus 40 ~~QL~~GiR~lDiR~~~~ 57 (279)
T cd08586 40 AEQLNAGIRFLDIRLRLI 57 (279)
T ss_pred HHHHhcCCeEEEEEeeec
Confidence 344557999999998753
No 136
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=31.01 E-value=1.7e+02 Score=19.80 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHH-----------------HcCCCHHHHHHHHHHHHhh
Q psy15247 159 QLAQS-WGFTREQFKIINLNAAE-----------------ASFQPEHEKKELIKLLESE 199 (203)
Q Consensus 159 ~~~~~-~~l~~~~l~~l~~nai~-----------------~sF~~~~~k~~l~~~~~~~ 199 (203)
..+.. .|-|.++++.....||+ |--+++++|++++..+.+.
T Consensus 8 Ai~~nv~g~s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 66 (68)
T PRK02955 8 AVLANVSGNSKEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNADENEKDEMLETLEQG 66 (68)
T ss_pred HHHHHccCCCHHHHHHHHHHHHhccchhcCCcchhHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555 89999999999999997 3447899999999988765
No 137
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=30.88 E-value=3.3e+02 Score=25.36 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+.+.+++.+++... ++ .| +.+-+|+.+.. .+.++..++++.+.+..++.+.-+.|.
T Consensus 301 ~ht~e~v~~ai~~a----r~-~Gf~~In~DLI~GLPg-Et~ed~~~tl~~l~~L~pd~isv~~L~ 359 (488)
T PRK08207 301 HHTVEDIIEKFHLA----RE-MGFDNINMDLIIGLPG-EGLEEVKHTLEEIEKLNPESLTVHTLA 359 (488)
T ss_pred CCCHHHHHHHHHHH----Hh-CCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhcCcCEEEEEece
Confidence 45666666554433 22 34 44677777654 467788889999988877766655554
No 138
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.79 E-value=3.9e+02 Score=23.81 Aligned_cols=151 Identities=12% Similarity=0.037 Sum_probs=83.2
Q ss_pred HHHHHCCceEEEEccC--ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEee-------cCCCCcccH
Q psy15247 23 EDCSKNNVAYVEVRYM--PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSC-------ATKWPVDTV 93 (203)
Q Consensus 23 ~~~~~dgV~Y~Elr~~--P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~-------~R~~~~e~a 93 (203)
+.+.+-|+..+-+.++ +. |... .-+.+.+++++.+.+.++.+++ .|+.++.-++. .| .+++..
T Consensus 128 e~A~~~g~~~v~i~~s~Sd~-h~~~-----n~~~t~~e~l~~~~~~v~~Ak~-~Gl~v~~~is~~fg~p~~~r-~~~~~l 199 (347)
T PLN02746 128 EAAIAAGAKEVAVFASASES-FSKS-----NINCSIEESLVRYREVALAAKK-HSIPVRGYVSCVVGCPIEGP-VPPSKV 199 (347)
T ss_pred HHHHHcCcCEEEEEEecCHH-HHHH-----HhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEeeecCCccCC-CCHHHH
Confidence 3444557777777654 32 2222 1258999999999999887765 57777655543 23 345566
Q ss_pred HHHHHHHHhhCCCceEEEeCCCCC-C-----------Cccc------cc------ccccccHHHHhCCCcEEEcCCC---
Q psy15247 94 PDTLRLAQNCTHYGVVGIDLLSIQ-P-----------ETGP------HG------SVYSYNQKFAKDNANFSLNSDD--- 146 (203)
Q Consensus 94 ~~~~~~a~~~~~~~vvG~dL~G~E-p-----------E~~g------HG------~l~~~p~~l~~~Gv~vsinTDD--- 146 (203)
.++++.+.+.--+.|.==|-.|-= | +..+ |+ ++.+ --.-+++|+...=+|=.
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN-~lAA~~aGa~~vd~sv~GlG 278 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALAN-ILVSLQMGISTVDSSVAGLG 278 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHH-HHHHHHhCCCEEEEeccccc
Confidence 666666665533334444666644 4 1111 44 1110 03456777754333322
Q ss_pred -----CcCcCCChHHHHHHHHH-c----CCCHHHHHHHHHHHHHHc
Q psy15247 147 -----PTLTGRYLNEDYQLAQS-W----GFTREQFKIINLNAAEAS 182 (203)
Q Consensus 147 -----p~~f~t~Ls~Ey~~~~~-~----~l~~~~l~~l~~nai~~s 182 (203)
|+--++.-+++...+.. . |++.+.|..+++.--+.+
T Consensus 279 ecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~ 324 (347)
T PLN02746 279 GCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHL 324 (347)
T ss_pred CCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 22234555566655555 3 567888887777644443
No 139
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=30.39 E-value=1.5e+02 Score=24.95 Aligned_cols=81 Identities=9% Similarity=0.045 Sum_probs=49.1
Q ss_pred HHHHHHHHHHCCceEEEEccCccchh---hhhhhhccCCCCHHHHHHHHHH-HHHHhHhhcCceEEEEEeecCCCCcccH
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYMPHKLL---GTELYQMLGYEGLKETVRRVYQ-GLKRGEDEFQVKSKSILSCATKWPVDTV 93 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~P~~~~---~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~i~~rlI~~~~R~~~~e~a 93 (203)
..+.+.++...|++++|+-.-+.... -.|-..-...+++.+++.+|.+ +|. ...|+ +|+++-=|++++.-
T Consensus 31 s~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~--~S~yP----vIlslE~Hcs~~qQ 104 (229)
T cd08627 31 SLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHAFV--TSEYP----IILSIEDHCSIVQQ 104 (229)
T ss_pred cHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCceEHHHHHHHHHHhhcc--CCCCC----EEEEEcccCCHHHH
Confidence 34566778889999999996543210 0000000134788888887754 222 12344 49999999998776
Q ss_pred HHHHHHHHhhC
Q psy15247 94 PDTLRLAQNCT 104 (203)
Q Consensus 94 ~~~~~~a~~~~ 104 (203)
..+++...+..
T Consensus 105 ~~ma~~l~~~l 115 (229)
T cd08627 105 RNMAQHFKKVF 115 (229)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 140
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=30.39 E-value=1.3e+02 Score=25.14 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=46.7
Q ss_pred HHHHHHHHCCceEEEEccCccchh---hhh-hhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPHKLL---GTE-LYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPD 95 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~~~~---~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~ 95 (203)
+...++...|++.+||-.-+.... -.| .. .-..+++++++++|.+-.-. ...|+ +|+++--|++.+.-..
T Consensus 33 ~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t-~ts~i~f~dv~~~Ik~~aF~-~s~yP----vILslE~Hcs~~qQ~~ 106 (226)
T cd08558 33 EAYIRALLRGCRCVELDCWDGPDGEPVVYHGHT-LTSKILFKDVIEAIKEYAFV-TSPYP----VILSLENHCSLEQQKK 106 (226)
T ss_pred HHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCC-CccceEHHHHHHHHHHHhcc-cCCCC----eEEEEecCCCHHHHHH
Confidence 556677789999999986433210 000 00 01247788887777653211 12344 4999999999876666
Q ss_pred HHHHHHhh
Q psy15247 96 TLRLAQNC 103 (203)
Q Consensus 96 ~~~~a~~~ 103 (203)
+++...+.
T Consensus 107 ma~~l~~~ 114 (226)
T cd08558 107 MAQILKEI 114 (226)
T ss_pred HHHHHHHH
Confidence 66665544
No 141
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=30.29 E-value=3.8e+02 Score=23.62 Aligned_cols=58 Identities=2% Similarity=0.000 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHhh-cC-ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 52 GYEGLKETVRRVYQGLKRGEDE-FQ-VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~-~~-i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
++.+.+++.+++... ++. +. +.+-+|+.+. ..+.+...++++.+.+..++.|.-+.|.
T Consensus 134 R~~~~~~~~~ai~~l----r~~G~~~v~~dlI~GlP-gqt~e~~~~tl~~~~~l~p~~is~y~L~ 193 (353)
T PRK05904 134 RTHTIQDSKEAINLL----HKNGIYNISCDFLYCLP-ILKLKDLDEVFNFILKHKINHISFYSLE 193 (353)
T ss_pred CCCCHHHHHHHHHHH----HHcCCCcEEEEEeecCC-CCCHHHHHHHHHHHHhcCCCEEEEEeeE
Confidence 345666666554333 222 22 5566777665 4677888999999988877665555443
No 142
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=30.27 E-value=1.6e+02 Score=25.15 Aligned_cols=78 Identities=8% Similarity=-0.023 Sum_probs=46.2
Q ss_pred HHHHHHHHCCceEEEEccCccchhh---hhhhhccCCCCHHHHHHHHHHH-HHHhHhhcCceEEEEEeecCCCCcccHHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPHKLLG---TELYQMLGYEGLKETVRRVYQG-LKRGEDEFQVKSKSILSCATKWPVDTVPD 95 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~~~~~---~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~i~~rlI~~~~R~~~~e~a~~ 95 (203)
+.+.++...|++++|+-.-+..... .|-..--..+.+++++++|.+- |. ...|+ +|+++-=|++.+.-..
T Consensus 33 ~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~--~s~yP----vIlslE~Hc~~~qQ~~ 106 (260)
T cd08597 33 EGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTLTSKISFRSVIEAINEYAFV--ASEYP----LILCIENHCSEKQQLV 106 (260)
T ss_pred HHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCccccceEHHHHHHHHHHHhcc--CCCCC----EEEEEecCCCHHHHHH
Confidence 4567888899999999865432100 0000001246777777777653 21 12344 4999998998876665
Q ss_pred HHHHHHhh
Q psy15247 96 TLRLAQNC 103 (203)
Q Consensus 96 ~~~~a~~~ 103 (203)
+++.....
T Consensus 107 ~a~~l~~~ 114 (260)
T cd08597 107 MAQYLKEI 114 (260)
T ss_pred HHHHHHHH
Confidence 66555443
No 143
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.14 E-value=3.1e+02 Score=23.60 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCc-eEEEEccC---ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC--ceEEEEEeecCCCCcc
Q psy15247 18 AYEFIEDCSKNNV-AYVEVRYM---PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ--VKSKSILSCATKWPVD 91 (203)
Q Consensus 18 ~~~~~~~~~~dgV-~Y~Elr~~---P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--i~~rlI~~~~R~~~~e 91 (203)
..+.++.+.+.|+ .++|+-.= +..... ..++.+.+++.+++... ++ .| +.+.+|+...- .+.+
T Consensus 125 ~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~-----i~Rg~t~~~~~~ai~~l----~~-~gi~v~~~lI~GlPg-et~e 193 (302)
T TIGR01212 125 VLDLLAEYVERGYEVWVELGLQTAHDKTLKK-----INRGHDFACYVDAVKRA----RK-RGIKVCSHVILGLPG-EDRE 193 (302)
T ss_pred HHHHHHHhhhCCceEEEEEccCcCCHHHHHH-----HcCcChHHHHHHHHHHH----HH-cCCEEEEeEEECCCC-CCHH
Confidence 3345555555677 56666432 222211 12456777666555443 22 34 44555555543 4667
Q ss_pred cHHHHHHHHHhhCCCce
Q psy15247 92 TVPDTLRLAQNCTHYGV 108 (203)
Q Consensus 92 ~a~~~~~~a~~~~~~~v 108 (203)
+..++++.+.+..++.|
T Consensus 194 ~~~~t~~~l~~l~~d~i 210 (302)
T TIGR01212 194 EMMETAKIVSLLDVDGI 210 (302)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 78888888887765543
No 144
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=29.89 E-value=3.6e+02 Score=24.60 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+.+.+++.+++. ..++ .| +.+-+|+.+.. .+.+...+.++.+.+..++.|.-+.|.
T Consensus 183 ~~~~~~~~~ai~----~l~~-~G~~~v~~dli~GlPg-qt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 183 IQPFEFTFALVE----AARE-LGFTSINIDLIYGLPK-QTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCCHHHHHHHHH----HHHH-cCCCcEEEEEEccCCC-CCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 345555554433 3322 34 45566666655 567788889999998877766655554
No 145
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.79 E-value=3.7e+02 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=27.9
Q ss_pred ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeC
Q psy15247 76 VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113 (203)
Q Consensus 76 i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL 113 (203)
+.+-+|+.+.. .+.+...++++.+.+..++.|.-+.|
T Consensus 204 v~~dli~GlPg-qt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 204 INIDLIYGLPK-QTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred EEEeEEeeCCC-CCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 35667777665 57888899999999988777766666
No 146
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.58 E-value=3e+02 Score=22.19 Aligned_cols=74 Identities=9% Similarity=-0.042 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCCCCccccccccccc--HHHHh
Q psy15247 58 ETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN--QKFAK 135 (203)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p--~~l~~ 135 (203)
.++..+++++.++.+++|+.+.++.+ ...+++...+.++.+....-++++......+. . .+ +.+.+
T Consensus 13 ~~~~~~~~g~~~~~~~~g~~v~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~--~--------~~~l~~~~~ 80 (271)
T cd06312 13 PFWTVVKNGAEDAAKDLGVDVEYRGP--ETFDVADMARLIEAAIAAKPDGIVVTIPDPDA--L--------DPAIKRAVA 80 (271)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEECC--CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH--h--------HHHHHHHHH
Confidence 47778888888888888877644432 22234444556666655555666555433221 0 12 56778
Q ss_pred CCCcEEEc
Q psy15247 136 DNANFSLN 143 (203)
Q Consensus 136 ~Gv~vsin 143 (203)
+|+||...
T Consensus 81 ~~ipvV~~ 88 (271)
T cd06312 81 AGIPVISF 88 (271)
T ss_pred CCCeEEEe
Confidence 89987554
No 147
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=29.57 E-value=56 Score=22.40 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHc
Q psy15247 158 YQLAQS-WGFTREQFKIINLNAAEAS 182 (203)
Q Consensus 158 y~~~~~-~~l~~~~l~~l~~nai~~s 182 (203)
|+.... |||+..++..|.++.+..+
T Consensus 16 FeaI~~~fGL~E~eVi~lMR~~lk~~ 41 (72)
T TIGR03643 16 FEAIEQQFGLSEKEVIKLMRQNLKPS 41 (72)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcChh
Confidence 455555 9999999999999887654
No 148
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=29.52 E-value=1.7e+02 Score=21.99 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHH
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 69 (203)
...++...+..++.+.+.|++-+= -|...+.. .|++.+++.+.+++++.+
T Consensus 87 ~~~l~~~~~~~L~~a~~~~~~SIA---fP~igtG~------~g~p~~~~A~~~~~~i~~ 136 (137)
T cd02903 87 LKILKDIVSECLEKCEELSYTSIS---FPAIGTGN------LGFPKDVVAKIMFDEVFK 136 (137)
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEE---ECCCcCcC------CCCCHHHHHHHHHHHHHh
Confidence 567888999999999999887321 15555544 489999999999888764
No 149
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=29.46 E-value=4.2e+02 Score=23.74 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.++++++ +.-||-.+ |.-.++.. .++++=+.++.++++++++++|-..-++..+.=
T Consensus 139 ~~~~~a~~~~~~----~~gGvD~IKdDe~l~~~~~------------~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita 202 (364)
T cd08210 139 SAAELAELAYAF----ALGGIDIIKDDHGLADQPF------------APFEERVKACQEAVAEANAETGGRTLYAPNVTG 202 (364)
T ss_pred CHHHHHHHHHHH----HhcCCCeeecCccccCccC------------CCHHHHHHHHHHHHHHHHhhcCCcceEEEecCC
Confidence 667777666554 45666666 77666432 578999999999999999998876656655553
Q ss_pred CCCcccHHHHHHHHHhh
Q psy15247 87 KWPVDTVPDTLRLAQNC 103 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~ 103 (203)
+.+++.+..+.+.+.
T Consensus 203 --~~~em~~ra~~a~~~ 217 (364)
T cd08210 203 --PPTQLLERARFAKEA 217 (364)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 344677777777765
No 150
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=2.3e+02 Score=20.67 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHh
Q psy15247 13 AVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRG 70 (203)
Q Consensus 13 ~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 70 (203)
.+-....++++-+.+.|+.| +.+|....-. | +++++++++.++-+..
T Consensus 18 svs~yVa~~i~~lk~~glky---~~~pm~T~iE-------g-~~del~~~ik~~~Ea~ 64 (100)
T COG0011 18 SVSKYVAEAIEILKESGLKY---QLGPMGTVIE-------G-ELDELMEAVKEAHEAV 64 (100)
T ss_pred CHHHHHHHHHHHHHHcCCce---eecCcceEEE-------e-cHHHHHHHHHHHHHHH
Confidence 36677778888888889887 5777765554 5 8899988887765543
No 151
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=28.89 E-value=1.1e+02 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCC----HHHHHHHHHHHHhh
Q psy15247 172 KIINLNAAEASFQP----EHEKKELIKLLESE 199 (203)
Q Consensus 172 ~~l~~nai~~sF~~----~~~k~~l~~~~~~~ 199 (203)
+.+..||+++++++ +.+|+.+++++++-
T Consensus 14 r~iI~nAL~~~~LaG~vN~~~r~~~l~~~~~s 45 (123)
T PF08683_consen 14 RRIIHNALSHCCLAGPVNEKQRNKALEEMSKS 45 (123)
T ss_dssp HHHHHHHHHHTTT-SSTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHhhC
Confidence 57899999999865 57899999988763
No 152
>PRK09248 putative hydrolase; Validated
Probab=28.42 E-value=86 Score=25.92 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHHhCCCcEEEcCC--CCcCcCCChHHHHHHHHH-cCCCHHH
Q psy15247 131 QKFAKDNANFSLNSD--DPTLTGRYLNEDYQLAQS-WGFTREQ 170 (203)
Q Consensus 131 ~~l~~~Gv~vsinTD--Dp~~f~t~Ls~Ey~~~~~-~~l~~~~ 170 (203)
+.+.+.|++++++|| .|.-++ . -.+-..+++ .|++...
T Consensus 179 ~~~~~~g~~~~~gSDAH~~~~vg-~-~~~~~~~~~~~g~~~~~ 219 (246)
T PRK09248 179 ALCKKAGVWVALGSDAHIAFDIG-N-FEEALKILDEVGFPEER 219 (246)
T ss_pred HHHHHcCCeEEEeCCCCChhhhc-c-HHHHHHHHHHcCCCHHH
Confidence 778899999999999 454444 3 344555555 8888774
No 153
>PRK07945 hypothetical protein; Provisional
Probab=28.37 E-value=88 Score=27.53 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHhCCCcEEEcCCCCcCcCC-ChHHHHHHHHHcCCCHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGR-YLNEDYQLAQSWGFTREQFKI 173 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t-~Ls~Ey~~~~~~~l~~~~l~~ 173 (203)
+.+.+.|+||+|+||-=..... ++..-+..+.+.|++.+.+.+
T Consensus 278 ~~a~e~G~~vtigSDAH~p~~v~~~~~~~~~a~~~g~~~~~i~n 321 (335)
T PRK07945 278 RLALDAGCLFSIDTDAHAPGQLDWLGYGCERAEEAGVPADRIVN 321 (335)
T ss_pred HHHHHcCCeEEecCCCCChhhcchHHHHHHHHHHcCCCHHHccc
Confidence 7888889999999995444432 333333333337777776543
No 154
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.37 E-value=4.1e+02 Score=23.37 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHh-hcC-ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 52 GYEGLKETVRRVYQGLKRGED-EFQ-VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~-~~~-i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
++.+.+++.+++... ++ .+. +.+-+|+.+. ..+.+...++++.+.+..++.|.-+.|.
T Consensus 139 R~~s~~~~~~a~~~l----~~~g~~~v~~dli~GlP-gqt~~~~~~tl~~~~~l~~~~i~~y~l~ 198 (375)
T PRK05628 139 RTHTPGRAVAAAREA----RAAGFEHVNLDLIYGTP-GESDDDWRASLDAALEAGVDHVSAYALI 198 (375)
T ss_pred CCCCHHHHHHHHHHH----HHcCCCcEEEEEeccCC-CCCHHHHHHHHHHHHhcCCCEEEeeeee
Confidence 445666666554332 22 122 4455555554 4567788889999998887777666554
No 155
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=28.09 E-value=76 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=30.4
Q ss_pred EEEEEeecCCC-CcccHHHHHHHHHhh-----C-CCceEEEeCCCCC
Q psy15247 78 SKSILSCATKW-PVDTVPDTLRLAQNC-----T-HYGVVGIDLLSIQ 117 (203)
Q Consensus 78 ~rlI~~~~R~~-~~e~a~~~~~~a~~~-----~-~~~vvG~dL~G~E 117 (203)
.-++++++|.+ +|++|.+.++.|++- . +..+..||..+-+
T Consensus 23 fv~~Ls~D~~WmspdqAk~li~~A~~eGLl~~~~~~l~~~Fd~~~v~ 69 (144)
T PF09999_consen 23 FVFALSFDRKWMSPDQAKRLIDEAIEEGLLEEEGGYLVPNFDPSEVE 69 (144)
T ss_pred eEeeEeeecCCCCHHHHHHHHHHHHHCCCeeecCCEEEEecCccccc
Confidence 44678888985 999999999999763 1 2246788888876
No 156
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.84 E-value=3.2e+02 Score=23.49 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=40.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHCCceEEE-------EccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCc
Q psy15247 5 AFLRGDLDAVERFAYEFIEDCSKNNVAYVE-------VRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV 76 (203)
Q Consensus 5 ~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~E-------lr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 76 (203)
++..-+++.+.+++..+-+-.++-++-|+= -|+||+.+. |+..++=++. ++++++++|+
T Consensus 17 PC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFq---------G~G~eeGL~~----L~~vk~~~Gl 82 (264)
T PRK05198 17 PCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFR---------GPGLEEGLKI----LQEVKETFGV 82 (264)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCC---------CCChHHHHHH----HHHHHHHHCC
Confidence 344449999999999988888888875543 588888653 5665544444 4455566664
No 157
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.74 E-value=2e+02 Score=24.64 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCceEEEEccCccch-----hhhh-hhhccCCCCHHHHHHHHHH-HHHHhHhhcCceEEEEEeecCCCCcc
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHKL-----LGTE-LYQMLGYEGLKETVRRVYQ-GLKRGEDEFQVKSKSILSCATKWPVD 91 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~~-----~~~~-~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~i~~rlI~~~~R~~~~e 91 (203)
.+...++...|++.+||-.=+... .-.| .. --..+++.+++++|.+ +|. ...|++ |+++-=|++++
T Consensus 32 ~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~t-lts~i~f~dv~~aI~~~AF~--~s~yPv----IlslE~Hcs~~ 104 (257)
T cd08626 32 VEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKA-MCTDILFKDVIQAIKDTAFV--TSDYPV----ILSFENHCSKP 104 (257)
T ss_pred HHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCC-CccCcCHHHHHHHHHHHhcc--cCCCCE----EEEEeccCCHH
Confidence 345567778999999999654310 0000 00 0124788888888765 222 123554 99999999987
Q ss_pred cHHHHHHHHHhhC
Q psy15247 92 TVPDTLRLAQNCT 104 (203)
Q Consensus 92 ~a~~~~~~a~~~~ 104 (203)
.-..+++......
T Consensus 105 qQ~~ma~~l~~~l 117 (257)
T cd08626 105 QQYKLAKYCEEIF 117 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 158
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=27.59 E-value=2.7e+02 Score=23.58 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=46.7
Q ss_pred HHHHHHCCceEE-EEccCccchhhhhhhhccCCCCHHHHHHHHHHH-HHHhHhhcCceEEEEEeec-CCCCcccHHHHHH
Q psy15247 22 IEDCSKNNVAYV-EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQG-LKRGEDEFQVKSKSILSCA-TKWPVDTVPDTLR 98 (203)
Q Consensus 22 ~~~~~~dgV~Y~-Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~i~~rlI~~~~-R~~~~e~a~~~~~ 98 (203)
++.++.-||+++ ++=+.|...... -.+.+.++.++.- ..++ .++|+..++-+.+. |.-+++....+-+
T Consensus 17 lekMa~sGI~~Vit~AhdP~~~~~~--------~v~~~h~~rl~~~E~~Ra-~~~Gl~~~vavGvHPr~iP~e~~~~l~~ 87 (254)
T COG1099 17 LEKMALSGIREVITLAHDPYPMKTA--------EVYLDHFRRLLGVEPERA-EKAGLKLKVAVGVHPRAIPPELEEVLEE 87 (254)
T ss_pred HHHHHHhChhhhhhcccCCCCcccH--------HHHHHHHHHHHccchhhH-HhhCceeeEEeccCCCCCCchHHHHHHH
Confidence 345566677754 455556432111 1233333333322 2223 24789999888887 6667764333333
Q ss_pred HHHhhCCCceEEEeCCCCC
Q psy15247 99 LAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 99 ~a~~~~~~~vvG~dL~G~E 117 (203)
+-....+..||+||=-|-|
T Consensus 88 L~~~l~~e~VvAiGEiGLe 106 (254)
T COG1099 88 LEELLSNEDVVAIGEIGLE 106 (254)
T ss_pred HHhhcccCCeeEeeecccc
Confidence 3223335679999877765
No 159
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=27.36 E-value=4.8e+02 Score=23.84 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.++++++. .-||-++ |.-.+|.. .++++-+.++.++++++++++|-...+.+-+.
T Consensus 145 sp~~~a~~~y~~~----~GGvD~iKDDE~l~~q~~------------~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT- 207 (412)
T cd08213 145 SPEEHAEVAYEAL----VGGVDLVKDDENLTSQPF------------NRFEERAKESLKARDKAEAETGERKAYLANIT- 207 (412)
T ss_pred CHHHHHHHHHHHH----hcCCcccccCccCCCCCC------------CCHHHHHHHHHHHHHHHHHhhCCcceEEEEec-
Confidence 6777877776654 4444433 55555432 36788999999999999999887655555554
Q ss_pred CCCcccHHHHHHHHHhhC
Q psy15247 87 KWPVDTVPDTLRLAQNCT 104 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~~ 104 (203)
-+.++..+..+.+.+.-
T Consensus 208 -~~~~em~~ra~~a~e~G 224 (412)
T cd08213 208 -APVREMERRAELVADLG 224 (412)
T ss_pred -CCHHHHHHHHHHHHHhC
Confidence 33666777777777763
No 160
>PRK06740 histidinol-phosphatase; Validated
Probab=27.22 E-value=41 Score=29.56 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHHhCCCcEEEcCCCC
Q psy15247 131 QKFAKDNANFSLNSDDP 147 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp 147 (203)
+.+.+.|+||+||||-=
T Consensus 278 ~~~~e~Gv~~tlgSDAH 294 (331)
T PRK06740 278 QVLAKHEVPITLSSDAH 294 (331)
T ss_pred HHHHHCCCeEEEeeCCC
Confidence 78889999999999943
No 161
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=27.04 E-value=4.3e+02 Score=23.17 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHhHhh-cC-ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDE-FQ-VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~-~~-i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+.+.+++++++... ++. ++ +.+-+|+.+.. .+.++..++++.+.+..++.|.-+.|.
T Consensus 131 ~~~~~~~~~ai~~l----~~~g~~~v~~dli~GlPg-qt~e~~~~~l~~~~~l~~~~is~y~l~ 189 (374)
T PRK05799 131 IHTFEEFLENYKLA----RKLGFNNINVDLMFGLPN-QTLEDWKETLEKVVELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHH----HHcCCCcEEEEeecCCCC-CCHHHHHHHHHHHHhcCCCEEEEeccE
Confidence 45666666554433 222 22 45566666544 467788899999988876666555543
No 162
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=27.01 E-value=1.5e+02 Score=20.84 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcCceEEEE
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQVKSKSI 81 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~i~~rlI 81 (203)
.++.+++.+.+-+++.+.+.+||+.+.|-
T Consensus 8 ~Lg~~eAr~~~~~~~~~l~~~~~~~~~W~ 36 (87)
T PF09650_consen 8 SLGREEARRRAEELAEKLAEEYGVECTWE 36 (87)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 58999999999999999999999888776
No 163
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=26.99 E-value=4.9e+02 Score=23.97 Aligned_cols=77 Identities=14% Similarity=0.045 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.+++++++ .-||-++ |...+|.+ .++++-+.++.++++++++++|-...+.+-+.
T Consensus 174 sp~~~a~~~y~~~----~GGvD~IKDDE~l~~q~f------------~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT- 236 (424)
T cd08208 174 PPGEFAELGYQSW----LGGLDIAKDDEMLADVDW------------CPLEERAALLGKARRRAEAETGVPKIYLANIT- 236 (424)
T ss_pred CHHHHHHHHHHHH----cCCcccccccccccCCCC------------CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-
Confidence 6777777766654 5566555 67666543 36788999999999999999886554444444
Q ss_pred CCCcccHHHHHHHHHhhC
Q psy15247 87 KWPVDTVPDTLRLAQNCT 104 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~~ 104 (203)
-+.++..+..+.+.+.-
T Consensus 237 -~~~~em~~ra~~a~~~G 253 (424)
T cd08208 237 -DEVDRLMELHDVAVRNG 253 (424)
T ss_pred -CCHHHHHHHHHHHHHhC
Confidence 35666777777777763
No 164
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=26.83 E-value=2e+02 Score=20.30 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeec
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCA 85 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~ 85 (203)
.+.+.....++++-+.+.|+.| +.+|..-.-.| +++++++.+-+..+...+...-++-..+-++
T Consensus 12 ~~s~~~~V~~~i~~i~~sgl~y---~v~pm~T~iEG--------e~dev~~~i~~~~e~~~~~G~~Rv~t~ikId 75 (92)
T PF01910_consen 12 GESVSAYVAEAIEVIKESGLKY---EVGPMGTTIEG--------ELDEVMALIKEAHEALFEAGAKRVVTVIKID 75 (92)
T ss_dssp SSHHHHHHHHHHHHHHTSSSEE---EEETTEEEEEE--------EHHHHHHHHHHHHHHHHCTTSSEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCce---EEcCCccEEEe--------cHHHHHHHHHHHHHHHHHcCCCeEEEEEEEE
Confidence 4567888899999999999887 56777655552 5888888887776665544223444444443
No 165
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.82 E-value=3.6e+02 Score=24.19 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhcC-ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 52 GYEGLKETVRRVYQGLKRGEDEFQ-VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~-i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
++.+.+++.+++....+ + .+. +.+-+|+.+.- .+.+...+.++.+.+..++.|.-+.|.
T Consensus 146 R~~~~~~~~~ai~~l~~-~--G~~~v~~dlI~GlPg-qt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQ-A--GIENFSLDLISGLPH-QTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred CCCCHHHHHHHHHHHHH-c--CCCeEEEEeecCCCC-CCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 45677777766544322 1 122 44556665554 577788889999988877766555544
No 166
>PRK13241 ureA urease subunit gamma; Provisional
Probab=26.70 E-value=22 Score=25.95 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhH
Q psy15247 8 RGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGE 71 (203)
Q Consensus 8 ~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 71 (203)
++.+|++..++.+++|. ++||-.+.|+...-.. =++.++++.+|-+-+...+
T Consensus 30 LN~pEAvAlI~~~v~E~-aRdG~svaelm~~g~~-----------~L~~ddVm~GV~emi~~vq 81 (100)
T PRK13241 30 LNYPEAVALISDALLEG-ARDGKTVAELMSYGRT-----------VLTRDDVMEGVPEMIPDVQ 81 (100)
T ss_pred cCcHHHHHHHHHHHHHH-hhCCCCHHHHHHHhhh-----------hCCHHhcccCHHHhhccee
Confidence 35899998888888876 7788888888764221 2788999999988887654
No 167
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.49 E-value=3.9e+02 Score=22.51 Aligned_cols=90 Identities=9% Similarity=-0.121 Sum_probs=56.2
Q ss_pred HHHHHHHCCceEEEEccCcc-chhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEE-Eee---cCCCCcccHHH
Q psy15247 21 FIEDCSKNNVAYVEVRYMPH-KLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSI-LSC---ATKWPVDTVPD 95 (203)
Q Consensus 21 ~~~~~~~dgV~Y~Elr~~P~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI-~~~---~R~~~~e~a~~ 95 (203)
-++.+.+-|+..+-+.++.. .|... .-|.+.++.++.+.+.++.+++. |..+.+- .++ .|+ +++...+
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~-----~~~~~~~~~~~~~~~~i~~ak~~-G~~v~~~~~~~~d~~~~-~~~~~~~ 155 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTE-----ALGTTLEENLAMIRDSVAYLKSH-GREVIFDAEHFFDGYKA-NPEYALA 155 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHc-CCeEEEeEEeccccCCC-CHHHHHH
Confidence 35566677888776665532 22221 12578899999999999988764 6666553 111 243 4666667
Q ss_pred HHHHHHhhCCCceEEEeCCCCC
Q psy15247 96 TLRLAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 96 ~~~~a~~~~~~~vvG~dL~G~E 117 (203)
.++.+.....+.|.=-|-.|--
T Consensus 156 ~~~~~~~~g~~~i~l~DT~G~~ 177 (273)
T cd07941 156 TLKAAAEAGADWLVLCDTNGGT 177 (273)
T ss_pred HHHHHHhCCCCEEEEecCCCCC
Confidence 7776666544556555777754
No 168
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.46 E-value=4.2e+02 Score=23.19 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcCc---eEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQV---KSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~i---~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL 113 (203)
+.+.+++.+++. .+++ .|+ .+-+|+.+.. .+.+...++++.+.+..++.|.-+.|
T Consensus 132 ~~~~~~~~~ai~----~l~~-~G~~~v~~dli~GlPg-qt~~~~~~~l~~~~~l~~~~is~y~l 189 (360)
T TIGR00539 132 QHSAKNIAPAIE----TALK-SGIENISLDLMYGLPL-QTLNSLKEELKLAKELPINHLSAYAL 189 (360)
T ss_pred CCCHHHHHHHHH----HHHH-cCCCeEEEeccCCCCC-CCHHHHHHHHHHHHccCCCEEEeecc
Confidence 345565555443 3322 354 3444555544 56777888999988887665544443
No 169
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.37 E-value=2.1e+02 Score=23.57 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEE
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSI 81 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI 81 (203)
..+.++.+++-|..++|+... |..+.. .++.. -.+.+++..+++|+.+--+
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~--------~~~~~-----~~~~l~~~~~~~gl~v~s~ 66 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAP--------DLKAG-----GIKQIKALAQTYQMPIIGY 66 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcccccc--------ccCch-----HHHHHHHHHHHcCCeEEEe
Confidence 567888999999999999765 322211 12221 2344566666788876443
No 170
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=26.31 E-value=3.7e+02 Score=24.04 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP 89 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~ 89 (203)
+++.+.++++++++ .=-|+|+-.|.-..+.. ++.+|=++.+.++++++++++|-..-++..+.= +
T Consensus 144 d~~~la~~~~~l~~-gGvD~Ikdde~~ge~~~------------~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~--~ 208 (367)
T cd08205 144 SPEELAELAYELAL-GGIDLIKDDELLADQPY------------APFEERVRACMEAVRRANEETGRKTLYAPNITG--D 208 (367)
T ss_pred CHHHHHHHHHHHHh-cCCCeeeccccccCccc------------CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC--C
Confidence 67778777777665 22366776677665432 578899999999999999888754444444432 2
Q ss_pred cccHHHHHHHHHhhC
Q psy15247 90 VDTVPDTLRLAQNCT 104 (203)
Q Consensus 90 ~e~a~~~~~~a~~~~ 104 (203)
.+++.+..+.+.+.-
T Consensus 209 ~~e~i~~a~~a~~~G 223 (367)
T cd08205 209 PDELRRRADRAVEAG 223 (367)
T ss_pred HHHHHHHHHHHHHcC
Confidence 356777777777653
No 171
>PRK13242 ureA urease subunit gamma; Provisional
Probab=26.23 E-value=22 Score=25.85 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhH
Q psy15247 8 RGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGE 71 (203)
Q Consensus 8 ~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 71 (203)
++++|++..++.+++|. ++||-.+.|+...=. . -++.++++.+|-+-+...+
T Consensus 30 LN~pEAvAlIs~~i~E~-aRdG~svaelm~~g~----~-------vL~~~dVm~GV~~mi~~vq 81 (100)
T PRK13242 30 LNHPEAVAVLSAYVLDG-AREGKTVEEVMDGAR----S-------VLKADDVMDGVPDLLPLIQ 81 (100)
T ss_pred cCcHHHHHHHHHHHHHH-hhcCCcHHHHHHHHH----h-------hCCHHhcccCHHHhhccee
Confidence 45899999998888887 778888888875421 1 3788999999988887654
No 172
>PRK08609 hypothetical protein; Provisional
Probab=26.23 E-value=87 Score=29.74 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=29.8
Q ss_pred HHHHhCCCcEEEcCCCCcCcCC-ChHHHHHHHHHcCCCHHHHHHH
Q psy15247 131 QKFAKDNANFSLNSDDPTLTGR-YLNEDYQLAQSWGFTREQFKII 174 (203)
Q Consensus 131 ~~l~~~Gv~vsinTDDp~~f~t-~Ls~Ey~~~~~~~l~~~~l~~l 174 (203)
+.+.+.|++++||||-=...+. ++..-...+.+.|++.+++.+.
T Consensus 512 ~~~~e~Gv~i~igSDAH~~~~l~~~~~~v~~ar~~~~~~~~v~N~ 556 (570)
T PRK08609 512 KKAQEAGVKLAINTDAHHTEMLDDMKYGVATARKGWIQKDRVINT 556 (570)
T ss_pred HHHHHcCCEEEEECCCCChhhhCcHHHHHHHHHHcCCCHHHcccC
Confidence 8899999999999996554443 4433333333388888876543
No 173
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.07 E-value=3.2e+02 Score=23.87 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=41.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHCCceEEE-------EccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCce
Q psy15247 5 AFLRGDLDAVERFAYEFIEDCSKNNVAYVE-------VRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVK 77 (203)
Q Consensus 5 ~~~~~t~~~l~~~~~~~~~~~~~dgV~Y~E-------lr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 77 (203)
+|..-+++.+.+++..+-+-+.+-|+.|+= -|++|..+. |+..++=++. ++++++++|+.
T Consensus 23 PC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFr---------G~G~eeGL~i----L~~vk~~~glp 89 (290)
T PLN03033 23 PNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFR---------GPGMAEGLKI----LEKVKVAYDLP 89 (290)
T ss_pred CChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCC---------CCCHHHHHHH----HHHHHHHHCCc
Confidence 344449999999998888888888997763 677777653 5676655544 45555666643
No 174
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.92 E-value=4.2e+02 Score=22.61 Aligned_cols=88 Identities=8% Similarity=-0.039 Sum_probs=54.7
Q ss_pred HHHHHHCCceEEEEccC--ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEee-c---CCCCcccHHH
Q psy15247 22 IEDCSKNNVAYVEVRYM--PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSC-A---TKWPVDTVPD 95 (203)
Q Consensus 22 ~~~~~~dgV~Y~Elr~~--P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~-~---R~~~~e~a~~ 95 (203)
++.+.+-|+..+-+.++ +.....+ -+.+.+++++.+.+.++.++. .|+.+++-+.- . | .+++...+
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~------~~~t~~e~l~~~~~~i~~a~~-~G~~v~~~~~d~~~~~r-~~~~~~~~ 151 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQ------LRKTPEEHFADIREVIEYAIK-NGIEVNIYLEDWSNGMR-DSPDYVFQ 151 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHH------HCcCHHHHHHHHHHHHHHHHh-CCCEEEEEEEeCCCCCc-CCHHHHHH
Confidence 45555667777777663 3322222 257899999999999988865 47666655542 1 3 35666777
Q ss_pred HHHHHHhhCCCceEEEeCCCCC
Q psy15247 96 TLRLAQNCTHYGVVGIDLLSIQ 117 (203)
Q Consensus 96 ~~~~a~~~~~~~vvG~dL~G~E 117 (203)
+++.+.+...+.|.=-|-.|-=
T Consensus 152 ~~~~~~~~G~~~i~l~DT~G~~ 173 (280)
T cd07945 152 LVDFLSDLPIKRIMLPDTLGIL 173 (280)
T ss_pred HHHHHHHcCCCEEEecCCCCCC
Confidence 7776666544444444666654
No 175
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.88 E-value=2.6e+02 Score=24.34 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+.+.+.+.+ ++.|+.+.+ ..+...-+.+.+.+.++.+.+++.+.|||+|
T Consensus 37 ~~~~v~~~L----~~~~i~~~~-~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 85 (351)
T cd08170 37 VGAKIEESL----AAAGIDARF-EVFGGECTRAEIERLAEIARDNGADVVIGIG 85 (351)
T ss_pred HHHHHHHHH----HhCCCeEEE-EEeCCcCCHHHHHHHHHHHhhcCCCEEEEec
Confidence 444444444 344666542 2344444556677788888888788899986
No 176
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=25.32 E-value=3e+02 Score=21.54 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 58 ETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
.+...+.++++++.+++|+.+.+. .. ..+++...+.++.++....++|+.....
T Consensus 12 ~~~~~~~~g~~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 12 PFFAELLRGIEEAAREAGYSVLLC--NS-DEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE--cC-CCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 466777888888877777665543 22 2334455666666666555666655444
No 177
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=25.24 E-value=2e+02 Score=26.00 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 55 GLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
....+++.+++.++. .++.+.+.-.+.-+-+.+.+.+.++.+.++.++.|||||
T Consensus 41 ~~~g~~~~v~~~L~~----~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalG 94 (377)
T COG1454 41 AKLGLLDKVLDSLDA----AGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALG 94 (377)
T ss_pred ccchhHHHHHHHHHh----cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334466666666652 356666555555555556677777888888889999985
No 178
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=25.02 E-value=2.3e+02 Score=23.81 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCceEEEEccCccc------hhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCccc
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHK------LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDT 92 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~ 92 (203)
.+...++...|++.+||-.-+.. +.. .. --..+++++++++|.+-.-. ...|+ +|+++-=|++.+.
T Consensus 32 ~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG--~t-~ts~i~f~dv~~~Ik~~aF~-~s~yP----vILslE~Hcs~~q 103 (231)
T cd08598 32 VEGYIRALQRGCRCVEIDVWDGDDGEPVVTHG--YT-LTSSVPFRDVCRAIKKYAFV-TSPYP----LILSLEVHCDAEQ 103 (231)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCCCCcEEeeC--CC-CcCceEHHHHHHHHHHHhcc-CCCCC----EEEEEecCCCHHH
Confidence 34556677899999999965332 100 00 01246788887777553211 12344 4999998998876
Q ss_pred HHHHHHHHHh
Q psy15247 93 VPDTLRLAQN 102 (203)
Q Consensus 93 a~~~~~~a~~ 102 (203)
-..+++...+
T Consensus 104 Q~~ma~~l~~ 113 (231)
T cd08598 104 QERMVEIMKE 113 (231)
T ss_pred HHHHHHHHHH
Confidence 6656565544
No 179
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.98 E-value=1.6e+02 Score=24.38 Aligned_cols=54 Identities=13% Similarity=-0.112 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEE
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSI 81 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI 81 (203)
..+.++.+++-|..++|+.+.+....... .+.+. .-.+.+++..+++|+.+.-+
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-----~~~~~-----~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR-----LDWSK-----EERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc-----ccCCH-----HHHHHHHHHHHHcCCCceEE
Confidence 35788889999999999987642110000 01232 22445666667788876544
No 180
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.86 E-value=2.8e+02 Score=24.18 Aligned_cols=40 Identities=3% Similarity=-0.042 Sum_probs=25.7
Q ss_pred hcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 73 EFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 73 ~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+.|+.+.+...+..+-+.+.+.+.++.+.+.+.+.|||+|
T Consensus 47 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavG 86 (345)
T cd08171 47 QSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVG 86 (345)
T ss_pred HCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeC
Confidence 3466655444444444555677777777777778899886
No 181
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=24.71 E-value=25 Score=25.50 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhH
Q psy15247 8 RGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGE 71 (203)
Q Consensus 8 ~~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 71 (203)
++.+|++..++.+++|. ++||-.+.|++..-.. =++.++++.+|-+-+...+
T Consensus 27 LN~pEAvAlIs~~v~E~-aRdG~svaelm~~g~~-----------~L~~d~Vm~GV~emi~~vq 78 (96)
T cd00390 27 LNYPEAVALIADEILEG-ARDGKSVAELMSLGKT-----------VLTRDDVMEGVPEMLHDVQ 78 (96)
T ss_pred cCcHHHHHHHHHHHHHH-hhcCCCHHHHHHHHhh-----------hCCHHhcccCHHHhhccee
Confidence 45899998888888876 6788888888754211 2788999999988887653
No 182
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=24.68 E-value=1.2e+02 Score=24.61 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=29.7
Q ss_pred cHHHHHHH-HHhhCCCceEEEeCCCCC----CCccc-----------cc------cccc---------cc-----HHHHh
Q psy15247 92 TVPDTLRL-AQNCTHYGVVGIDLLSIQ----PETGP-----------HG------SVYS---------YN-----QKFAK 135 (203)
Q Consensus 92 ~a~~~~~~-a~~~~~~~vvG~dL~G~E----pE~~g-----------HG------~l~~---------~p-----~~l~~ 135 (203)
.+.+.+.. ..++.|+.|+.+|++|.. .|..+ .| .+.. .| +.+.+
T Consensus 47 ~~~~~l~~~l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~l~~~l~~ 126 (202)
T PF01470_consen 47 KAFEALEELLEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVPDGPEAYFTTLPVRALVEALRE 126 (202)
T ss_dssp HHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SSTTS-SEEE-BS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccCCCccceecCCCHHHHHHHHHH
Confidence 45555543 345678899999999865 24322 22 1111 34 78899
Q ss_pred CCCcEEEcCCCCcCcC
Q psy15247 136 DNANFSLNSDDPTLTG 151 (203)
Q Consensus 136 ~Gv~vsinTDDp~~f~ 151 (203)
+|+|+.++ +|+|-|-
T Consensus 127 ~gip~~~S-~dAG~Yl 141 (202)
T PF01470_consen 127 AGIPVEIS-NDAGRYL 141 (202)
T ss_dssp TT--EEEE-S---SSH
T ss_pred cCCCCccc-CChhhhH
Confidence 99999995 6676663
No 183
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=24.50 E-value=1.3e+02 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHcCC--CHHHHHHHHH
Q psy15247 167 TREQFKIINLNAAEASFQ--PEHEKKELIK 194 (203)
Q Consensus 167 ~~~~l~~l~~nai~~sF~--~~~~k~~l~~ 194 (203)
...+....++|++..+|. ++++|+.|..
T Consensus 25 ~~q~~i~rAKnAlsSAyanss~aE~~QL~q 54 (63)
T PF12758_consen 25 EQQKAIQRAKNALSSAYANSSDAEREQLRQ 54 (63)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555667789999999885 5788888754
No 184
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=24.35 E-value=1.4e+02 Score=20.48 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=28.4
Q ss_pred CChHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q psy15247 152 RYLNEDYQLAQS-WGFTREQFKIINLNAAEASFQPEHEKKELIKLLES 198 (203)
Q Consensus 152 t~Ls~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~~~k~~l~~~~~~ 198 (203)
+++..+|..++. .||+..++..+..+. +.-.+++..|..
T Consensus 12 ~nlG~dW~~LA~~LG~~~~~I~~i~~~~--------~p~~~lL~~W~~ 51 (77)
T cd08311 12 GRPGRDWRSLAGELGYEDEAIDTFGREE--------SPVRTLLADWSA 51 (77)
T ss_pred CCCccCHHHHHHHcCCCHHHHHHHHcCh--------hHHHHHHHHHHH
Confidence 367788999999 999999999997652 333455555543
No 185
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=24.34 E-value=1.8e+02 Score=25.81 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+++.+.+.++ +.|+.+.++-.+..+-+.+.+.+.++.+.+...+.|||+|
T Consensus 40 ~~~~v~~~L~----~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 89 (375)
T cd08179 40 FLDKVEAYLK----EAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALG 89 (375)
T ss_pred hHHHHHHHHH----HcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344444443 3466665443445555666788888888887778899885
No 186
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=24.34 E-value=3.3e+02 Score=21.23 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+...+.++++++.++.|+.+.++-. . ..++...+.++.++....++||+....
T Consensus 13 ~~~~~~~g~~~~~~~~g~~l~~~~~--~-~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 13 FFAQVLKGIEEAAKAAGYQVLLANS--Q-NDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeC--C-CCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 5667888888888888876544322 2 233455666666665556777776544
No 187
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.16 E-value=3.8e+02 Score=21.56 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCCCCCCCccccccccccc--HHH
Q psy15247 59 TVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN--QKF 133 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~p--~~l 133 (203)
+...+.++++++.++++ ....+++..... +++...+.++..+....++|+-.....+. . .+ ..+
T Consensus 13 f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vDgiii~~~~~~~--~--------~~~i~~~ 81 (274)
T cd06311 13 WTAGIVWHAQAAAKKLEAAYPDVEFILVTASN-DTEQQNAQQDLLINRKIDALVILPFESAP--L--------TQPVAKA 81 (274)
T ss_pred HHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCchh--h--------HHHHHHH
Confidence 55667777777666653 456666655443 34445566666666555665544332221 0 12 667
Q ss_pred HhCCCcEE-EcC
Q psy15247 134 AKDNANFS-LNS 144 (203)
Q Consensus 134 ~~~Gv~vs-inT 144 (203)
.++|+||. +++
T Consensus 82 ~~~gIpvV~~d~ 93 (274)
T cd06311 82 KKAGIFVVVVDR 93 (274)
T ss_pred HHCCCeEEEEcC
Confidence 78999975 444
No 188
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=23.93 E-value=5.4e+02 Score=23.53 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeec
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCA 85 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~ 85 (203)
-+++.+.++++++.. -||-++ |.-.+|.+ .++++=+.++.++++++++++|-...+.+-+.
T Consensus 147 Lsp~~~a~~~y~~~~----GGvD~IKDDE~l~~q~~------------~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT 210 (407)
T PRK09549 147 RDLDYLKEQLRDQAL----GGVDLVKDDEILFENAL------------TPFEKRIVAGKEVLQEVYETTGHKTLYAVNLT 210 (407)
T ss_pred CCHHHHHHHHHHHHh----cCCcceecCcCCCCCCC------------cCHHHHHHHHHHHHHHHHHhhCCcceEEEecC
Confidence 378888888776654 444433 55555332 36788899999999999999886555544444
Q ss_pred CCCCcccHHHHHHHHHhh
Q psy15247 86 TKWPVDTVPDTLRLAQNC 103 (203)
Q Consensus 86 R~~~~e~a~~~~~~a~~~ 103 (203)
-+.++..+..+.+.+.
T Consensus 211 --~~~~em~~ra~~a~~~ 226 (407)
T PRK09549 211 --GRTFELKEKAKRAAEA 226 (407)
T ss_pred --CCHHHHHHHHHHHHHc
Confidence 3445666777777765
No 189
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=23.85 E-value=4.4e+02 Score=22.13 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+|+=+-..++..+.+.+.+.|+..+++++. |. .-+ +++.++. ..|+.+..|..+.+
T Consensus 160 sTpfAAQ~aae~aakka~~~GIk~V~V~vKGpG--------------gRE----tALRaL~----~~GLkIt~I~DvTp 216 (233)
T PTZ00090 160 QSERCAYRIGENIAKKCRRLGIFAVDIKFRRIM--------------RVE----TVLQAFY----ANGLQVTQIIHEPR 216 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCC--------------hHH----HHHHHHH----HCCCEEEEEEECCC
Confidence 577778889999999999999999999986 31 123 3444443 23788888887765
No 190
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=23.72 E-value=2.5e+02 Score=21.33 Aligned_cols=51 Identities=4% Similarity=-0.096 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHh
Q psy15247 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRG 70 (203)
Q Consensus 11 ~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 70 (203)
++.++...++.++-+.+.|++-+=+ |-..+.. .|++.++..+.+++.++++
T Consensus 89 ~~~L~~~~~~~L~~a~~~~~~SIAf---Pai~tG~------~gfP~~~aa~i~l~~v~~~ 139 (140)
T cd02905 89 ENALYSCYRNVLQLAKELGLESIAL---CVISSEK------RNYPPEAAAHIALRTVRRF 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE---CCcccCC------CCCCHHHHHHHHHHHHHHh
Confidence 5678888899999988888874321 5554443 3799999999999998865
No 191
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.71 E-value=2.6e+02 Score=23.94 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCceEEEEccCccc--------hhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCC-
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHK--------LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWP- 89 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~- 89 (203)
-+...++...|++.+||-.-+.. +.. .. --..+++++++++|.+-.= ....|++ |+++-=|++
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG--~t-lts~i~f~dv~~~I~~~AF-~~S~yPv----IlSlE~Hc~s 103 (258)
T cd08623 32 VEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHG--FT-MTTEISFKEVIEAIAECAF-KTSPFPI----LLSFENHVDS 103 (258)
T ss_pred HHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeC--CC-cccCcCHHHHHHHHHHHhc-cCCCCCE----EEEehhcCCC
Confidence 34556677899999999954332 110 00 0124788888888766221 1223554 999988884
Q ss_pred cccHHHHHHHHHhh
Q psy15247 90 VDTVPDTLRLAQNC 103 (203)
Q Consensus 90 ~e~a~~~~~~a~~~ 103 (203)
++.-..+++.....
T Consensus 104 ~~qQ~~ma~~l~~~ 117 (258)
T cd08623 104 PKQQAKMAEYCRLI 117 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555443
No 192
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.63 E-value=4.9e+02 Score=23.08 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcCc---eEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQV---KSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~i---~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+.+.+++++++... ++ .|+ .+-+|+.+.. .+.+...+.++.+.+..++.|.-+.|.
T Consensus 139 ~~~~~~~~~ai~~~----~~-~G~~~v~~dli~Glpg-qt~~~~~~~l~~~~~l~p~~is~y~l~ 197 (378)
T PRK05660 139 IHGPDEAKRAAKLA----QG-LGLRSFNLDLMHGLPD-QSLEEALDDLRQAIALNPPHLSWYQLT 197 (378)
T ss_pred CCCHHHHHHHHHHH----HH-cCCCeEEEEeecCCCC-CCHHHHHHHHHHHHhcCCCeEEeeccE
Confidence 45666665554333 22 344 4556666655 577788899999998877766655553
No 193
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=23.60 E-value=4.8e+02 Score=23.83 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHH---HHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIE---DCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~---~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.++++++.. |+.+|- |.-.+|.+ -++++=+.++.++++++++++|-..-+. ++=
T Consensus 153 ~~~~~A~~~y~~~~GGvD~IKDD----E~l~dq~~------------~p~~~Rv~~~~~a~~~a~~eTG~~~~y~--~Ni 214 (407)
T TIGR03332 153 DLGYLKEQLRQQALGGVDLVKDD----EILFETGL------------APFEKRITEGKEVLQEVYEQTGHKTLYA--VNL 214 (407)
T ss_pred CHHHHHHHHHHHhccCcccccCC----CCCCCCCC------------CCHHHHHHHHHHHHHHHHHHHCCcceEe--ecC
Confidence 66777766666554 444332 45555432 3678889999999999999988644444 333
Q ss_pred CCCcccHHHHHHHHHhh
Q psy15247 87 KWPVDTVPDTLRLAQNC 103 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~ 103 (203)
+-+..+..+.++.+.+.
T Consensus 215 T~~~~em~~ra~~a~~~ 231 (407)
T TIGR03332 215 TGRTFDLKDKAKRAAEL 231 (407)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 34444567777777765
No 194
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.58 E-value=1.7e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=36.6
Q ss_pred cHHHHHHHH-HhhCCCceEEEeCCCCC----CCccc-----------cc------cc-------cc--cc-----HHHHh
Q psy15247 92 TVPDTLRLA-QNCTHYGVVGIDLLSIQ----PETGP-----------HG------SV-------YS--YN-----QKFAK 135 (203)
Q Consensus 92 ~a~~~~~~a-~~~~~~~vvG~dL~G~E----pE~~g-----------HG------~l-------~~--~p-----~~l~~ 135 (203)
.+.+.+..+ .+++|+.|+.+|++|.. .|..+ .| .+ +. .| +.+.+
T Consensus 47 ~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~ttlp~~~l~~~l~~ 126 (208)
T PRK13194 47 RAREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFATLPTREIVEELKK 126 (208)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCHHHHHHHHHh
Confidence 455555444 35678889999999765 23321 22 11 11 45 78889
Q ss_pred CCCcEEEcCCCCcCcC
Q psy15247 136 DNANFSLNSDDPTLTG 151 (203)
Q Consensus 136 ~Gv~vsinTDDp~~f~ 151 (203)
+|+|++++.| +|-|-
T Consensus 127 ~gip~~~S~d-AG~yl 141 (208)
T PRK13194 127 NGIPAVLSYS-AGTYL 141 (208)
T ss_pred cCCCcEEeCC-Cccch
Confidence 9999999554 54443
No 195
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.55 E-value=4.7e+02 Score=22.41 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=41.0
Q ss_pred HHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCc-eEEEEEeecCCCCcccHHHHHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV-KSKSILSCATKWPVDTVPDTLR 98 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i-~~rlI~~~~R~~~~e~a~~~~~ 98 (203)
+.++++.+.|+..+ .+|.............++.+++.+ +++++.+.+ .|+ .+++-..+.+..+.+++.++++
T Consensus 109 ~~~~~L~~agl~~i--~ISlds~~~e~~~~i~~~~~~~~v----l~~i~~~~~-~g~~~v~i~~vv~~g~n~~ei~~l~~ 181 (331)
T PRK00164 109 RRAAALKDAGLDRV--NVSLDSLDPERFKAITGRDRLDQV----LAGIDAALA-AGLTPVKVNAVLMKGVNDDEIPDLLE 181 (331)
T ss_pred HHHHHHHHcCCCEE--EEEeccCCHHHhccCCCCCCHHHH----HHHHHHHHH-CCCCcEEEEEEEECCCCHHHHHHHHH
Confidence 34566666777543 333222111100000122345544 455555443 355 6666666778777778888888
Q ss_pred HHHhh
Q psy15247 99 LAQNC 103 (203)
Q Consensus 99 ~a~~~ 103 (203)
++.+.
T Consensus 182 ~~~~~ 186 (331)
T PRK00164 182 WAKDR 186 (331)
T ss_pred HHHhC
Confidence 88765
No 196
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=23.40 E-value=3e+02 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=24.7
Q ss_pred hcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 73 EFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 73 ~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+.|+.+. ...+...-+.+.+.+.++.+.+++.+.|||+|
T Consensus 54 ~~~~~~~-~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavG 92 (366)
T PRK09423 54 EAGLTVV-FEVFNGECSDNEIDRLVAIAEENGCDVVIGIG 92 (366)
T ss_pred hCCCeEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3466652 22343444555677777777777778899886
No 197
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=23.23 E-value=4e+02 Score=21.46 Aligned_cols=56 Identities=5% Similarity=0.008 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhc
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEF 74 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 74 (203)
+++.|+...+..++-+.+.|++-+=+ |...+.. .|++.+++.+.+++++.++-.+.
T Consensus 108 ~~~~L~~~~~~~L~~A~e~~~~SIAf---PaIstG~------~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 108 CEEQLEKTVKNCLAAAEDKKLKSIAF---PSLPSGR------NGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEE---CCcccCC------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 57888899999999988888773321 5444443 47999999999999999987663
No 198
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=23.16 E-value=5.1e+02 Score=22.69 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHh----hcCceEEEEEee
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGED----EFQVKSKSILSC 84 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~i~~rlI~~~ 84 (203)
+.+++.+++..+ .+++.|+|+-++ |..-... .....+.+..++++++++.. +.++-+|+=.
T Consensus 155 ~~~d~~~~~~~~-----~~~ad~lelN~scP~~~g~~-------~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp-- 220 (344)
T PRK05286 155 AVDDYLICLEKL-----YPYADYFTVNISSPNTPGLR-------DLQYGEALDELLAALKEAQAELHGYVPLLVKIAP-- 220 (344)
T ss_pred CHHHHHHHHHHH-----HhhCCEEEEEccCCCCCCcc-------cccCHHHHHHHHHHHHHHHhccccCCceEEEeCC--
Confidence 456776666654 236889999887 6532111 12223344455555555443 2455555532
Q ss_pred cCCCCcccHHHHHHHHHhhCCCceEEE
Q psy15247 85 ATKWPVDTVPDTLRLAQNCTHYGVVGI 111 (203)
Q Consensus 85 ~R~~~~e~a~~~~~~a~~~~~~~vvG~ 111 (203)
..+.++..++++.+.+.--++|+-+
T Consensus 221 --~~~~~~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 221 --DLSDEELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred --CCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 2333345556565554422334433
No 199
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=23.11 E-value=2.9e+02 Score=23.83 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=32.0
Q ss_pred HHHHhCCC-cEEEcCCCCcCc-----CCChHHHHHHHHHcCCCHHHHHHHHH-HHHHH
Q psy15247 131 QKFAKDNA-NFSLNSDDPTLT-----GRYLNEDYQLAQSWGFTREQFKIINL-NAAEA 181 (203)
Q Consensus 131 ~~l~~~Gv-~vsinTDDp~~f-----~t~Ls~Ey~~~~~~~l~~~~l~~l~~-nai~~ 181 (203)
+.+++.|+ +.+++||-+.-. ...+......+...|++.+++.+++. |+.+.
T Consensus 236 ~~l~~~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~ 293 (338)
T cd01307 236 RAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKLLALGMPLEEVIEAVTANPARM 293 (338)
T ss_pred HHHHHCCCCCeeecCCccccCCCCCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 77899997 789999975311 12234444444228999998766554 44443
No 200
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.03 E-value=2e+02 Score=24.21 Aligned_cols=27 Identities=4% Similarity=-0.145 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCceEEEEccC-ccchhh
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYM-PHKLLG 44 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~-P~~~~~ 44 (203)
..+.++++++-|..-+|++.. |..+..
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~ 40 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRR 40 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCC
Confidence 456889999999999999988 666644
No 201
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=22.86 E-value=1.6e+02 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEEccC-ccchhhhhhhhccCCCCHHHHHHH
Q psy15247 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYM-PHKLLGTELYQMLGYEGLKETVRR 62 (203)
Q Consensus 9 ~t~~~l~~~~~~~~~~~~~dgV~Y~Elr~~-P~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
.+.+.+++..+..++.+.+.++. ... |...+.. .|++.+++.++
T Consensus 73 ~~~~~L~~~~~~~l~~a~~~~~~----sIa~P~ig~G~------~g~~~~~~a~i 117 (118)
T PF01661_consen 73 NSYEALESAYRNALQKAEENGIK----SIAFPAIGTGI------GGFPWDEVAEI 117 (118)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTS----EEEEESTTSST------TSBTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCc----ccccCcccCCC------CCCCHHHHHhh
Confidence 47889999999999999999988 333 5554443 37898887765
No 202
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=22.65 E-value=89 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHc
Q psy15247 158 YQLAQS-WGFTREQFKIINLNAAEAS 182 (203)
Q Consensus 158 y~~~~~-~~l~~~~l~~l~~nai~~s 182 (203)
|+.... |||+..++..|.+.-+..+
T Consensus 15 FeaI~~qfGl~E~eVi~lMR~~Lk~~ 40 (73)
T PF10985_consen 15 FEAIERQFGLSEKEVIKLMRKELKPS 40 (73)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcChh
Confidence 445555 9999999999999887654
No 203
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.42 E-value=1.8e+02 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=37.5
Q ss_pred cHHHHHHH-HHhhCCCceEEEeCCCCC----CCccc----------------cc--------cccc--cc-----HHHHh
Q psy15247 92 TVPDTLRL-AQNCTHYGVVGIDLLSIQ----PETGP----------------HG--------SVYS--YN-----QKFAK 135 (203)
Q Consensus 92 ~a~~~~~~-a~~~~~~~vvG~dL~G~E----pE~~g----------------HG--------~l~~--~p-----~~l~~ 135 (203)
.+.+.+.. ..+++|+.|+.+|++|.- +|..+ ++ ..+. .| +.+.+
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~~gp~~~~t~lp~~~l~~~l~~ 126 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTNIPVEDLVDLLNE 126 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcccCCCcceeecCCCHHHHHHHHHh
Confidence 45555554 345678899999999865 23321 11 1111 45 78889
Q ss_pred CCCcEEEcCCCCcCcC
Q psy15247 136 DNANFSLNSDDPTLTG 151 (203)
Q Consensus 136 ~Gv~vsinTDDp~~f~ 151 (203)
+|+|+.++.| +|-|-
T Consensus 127 ~Gip~~~S~~-AG~yv 141 (209)
T PRK13193 127 NGIPAELSLS-AGSYL 141 (209)
T ss_pred cCCCceEecC-Cccch
Confidence 9999999666 65553
No 204
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=22.33 E-value=1.9e+02 Score=24.61 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHhhCCCceEEEeCCCCCCCcccccccccc-----c--HHHHhCCCcEE-EcCCCCc
Q psy15247 89 PVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSY-----N--QKFAKDNANFS-LNSDDPT 148 (203)
Q Consensus 89 ~~e~a~~~~~~a~~~~~~~vvG~dL~G~EpE~~gHG~l~~~-----p--~~l~~~Gv~vs-inTDDp~ 148 (203)
+.++|..+.+++.+.....+|=+.+-||+ .+ |+.. . +.|.+.|+.|. +|+|||.
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi~d~-~~-----Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~ 135 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVIGDD-KT-----LLPDPIETLKAAEILVKEGFTVLPYCTDDPV 135 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEecCc-cc-----cccCHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 34455555556655544446666666665 00 1100 1 66677777777 7777763
No 205
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=22.23 E-value=4e+02 Score=21.11 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHhhcCceEEEEE
Q psy15247 58 ETVRRVYQGLKRGEDEFQVKSKSIL 82 (203)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~i~~rlI~ 82 (203)
.+...++.++.+..+++|+.+.+..
T Consensus 16 ~~~~~~~~~i~~~~~~~g~~~~~~~ 40 (268)
T cd06271 16 PFFAEFLSGLSEALAEHGYDLVLLP 40 (268)
T ss_pred ccHHHHHHHHHHHHHHCCceEEEec
Confidence 3556677777777677787765554
No 206
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.13 E-value=4.7e+02 Score=22.88 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcC---ceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeCC
Q psy15247 53 YEGLKETVRRVYQGLKRGEDEFQ---VKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~---i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL~ 114 (203)
+.+.+++.+++... ++ .| +.+-+|+.+.. .+.+...+.++.+.+..++.|.-+.|.
T Consensus 130 ~~~~~~~~~ai~~l----r~-~g~~~v~iDli~GlPg-qt~~~~~~~l~~~~~l~~~~is~y~L~ 188 (350)
T PRK08446 130 IHSQKQIIKAIENA----KK-AGFENISIDLIYDTPL-DNKKLLKEELKLAKELPINHLSAYSLT 188 (350)
T ss_pred CCCHHHHHHHHHHH----HH-cCCCEEEEEeecCCCC-CCHHHHHHHHHHHHhcCCCEEEeccce
Confidence 45666655554433 22 24 44667776654 567778888898888877766555544
No 207
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=22.11 E-value=1.8e+02 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=21.6
Q ss_pred EEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhh
Q psy15247 32 YVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDE 73 (203)
Q Consensus 32 Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 73 (203)
-.+++++|..+.. .+.+++-+.|+++++++.++
T Consensus 42 v~~i~i~~~~~~~---------~~~~~L~~~I~~A~n~A~~~ 74 (93)
T PF02575_consen 42 VVDIEIDPSALRP---------LDPEELEDLIVEAVNDAQKK 74 (93)
T ss_dssp EEEEEE-GGGGCT---------S-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEehHhhcc---------CCHHHHHHHHHHHHHHHHHH
Confidence 4678888887642 57777777777777776553
No 208
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.75 E-value=1.7e+02 Score=16.51 Aligned_cols=13 Identities=15% Similarity=0.283 Sum_probs=8.6
Q ss_pred cCCCHHHHHHHHH
Q psy15247 164 WGFTREQFKIINL 176 (203)
Q Consensus 164 ~~l~~~~l~~l~~ 176 (203)
.|+|.+++++...
T Consensus 15 ~Gls~eeir~FL~ 27 (30)
T PF08671_consen 15 SGLSKEEIREFLE 27 (30)
T ss_dssp TT--HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 8999999887653
No 209
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.57 E-value=3.3e+02 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCceEEEEccC-ccch
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYM-PHKL 42 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~-P~~~ 42 (203)
..+.++.+++.|...+|+... |..+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~ 37 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSW 37 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCC
Confidence 346789999999999999987 5443
No 210
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.48 E-value=2.1e+02 Score=24.41 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHhhCCCceEEEeCCCCC----CCccccccccccc--HHHHhCCCcEE-EcCCCC
Q psy15247 89 PVDTVPDTLRLAQNCTHYGVVGIDLLSIQ----PETGPHGSVYSYN--QKFAKDNANFS-LNSDDP 147 (203)
Q Consensus 89 ~~e~a~~~~~~a~~~~~~~vvG~dL~G~E----pE~~gHG~l~~~p--~~l~~~Gv~vs-inTDDp 147 (203)
+.++|..+.+++.+.....+|=+.+-||+ |+-. .+ .. +.|.+.|+.|. +|+|||
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~---~t--v~aa~~L~~~Gf~vlpyc~~d~ 134 (250)
T PRK00208 74 TAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPI---ET--LKAAEILVKEGFVVLPYCTDDP 134 (250)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHH---HH--HHHHHHHHHCCCEEEEEeCCCH
Confidence 34555556666665544446677776765 2000 00 01 56666677666 777776
No 211
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.38 E-value=6.3e+02 Score=23.02 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceE--EEEEeecCCCCcccHHH
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKS--KSILSCATKWPVDTVPD 95 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~--rlI~~~~R~~~~e~a~~ 95 (203)
..+.++.+++-|+.++.+-+- +.....+....++.+.+++.+++ +.+ ++.|+.+ .+|+.. -..+.+...+
T Consensus 286 ~~e~l~~l~~aG~~~v~iGiE--S~s~~~L~~~~K~~~~~~~~~~i----~~~-~~~Gi~v~~~~IiGl-Pget~e~~~~ 357 (472)
T TIGR03471 286 DYETLKVMKENGLRLLLVGYE--SGDQQILKNIKKGLTVEIARRFT----RDC-HKLGIKVHGTFILGL-PGETRETIRK 357 (472)
T ss_pred CHHHHHHHHHcCCCEEEEcCC--CCCHHHHHHhcCCCCHHHHHHHH----HHH-HHCCCeEEEEEEEeC-CCCCHHHHHH
Confidence 356677777778877766542 11111111123467777666554 322 2356554 455544 3456778888
Q ss_pred HHHHHHhhCCCceEEEeCC
Q psy15247 96 TLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 96 ~~~~a~~~~~~~vvG~dL~ 114 (203)
+++.+.+...+ .+.+.+.
T Consensus 358 ti~~~~~l~~~-~~~~~~l 375 (472)
T TIGR03471 358 TIDFAKELNPH-TIQVSLA 375 (472)
T ss_pred HHHHHHhcCCC-ceeeeec
Confidence 88888877543 3444443
No 212
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=21.35 E-value=2.3e+02 Score=24.96 Aligned_cols=40 Identities=8% Similarity=0.075 Sum_probs=25.9
Q ss_pred hcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 73 EFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 73 ~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+.++.+.+.-.+..+-+.+.+.+.++.+.++..+.|||+|
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 85 (367)
T cd08182 46 PLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVG 85 (367)
T ss_pred HcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 3455554444444444556677788888887778888885
No 213
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=21.32 E-value=6.1e+02 Score=22.82 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCceEE---EEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecC
Q psy15247 10 DLDAVERFAYEFIEDCSKNNVAYV---EVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCAT 86 (203)
Q Consensus 10 t~~~l~~~~~~~~~~~~~dgV~Y~---Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R 86 (203)
+++.+.+++++ ++.-||-++ |...+|.. .++++-+.++.++++++++++|-...+.+-+.
T Consensus 141 sp~~~a~~~y~----~~~GG~D~IKDDE~l~~q~~------------~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT- 203 (366)
T cd08148 141 NPKYTAEAAYA----AALGGLDLIKDDETLTDQPF------------CPLRDRITEVAAALDRVQEETGEKKLYAVNVT- 203 (366)
T ss_pred CHHHHHHHHHH----HHhCCCCccccccccCCCCC------------CcHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-
Confidence 67777766655 455565555 66666533 36788999999999999999886554444444
Q ss_pred CCCcccHHHHHHHHHhhC
Q psy15247 87 KWPVDTVPDTLRLAQNCT 104 (203)
Q Consensus 87 ~~~~e~a~~~~~~a~~~~ 104 (203)
-+.++..+..+.+++.-
T Consensus 204 -~~~~em~~ra~~~~~~G 220 (366)
T cd08148 204 -AGTFEIIERAERALELG 220 (366)
T ss_pred -CCHHHHHHHHHHHHHhC
Confidence 44466777777777653
No 214
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=21.23 E-value=2.3e+02 Score=24.26 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCceEEEEccCccchh---hhhhhhccCCCCHHHHHHHHHH-HHHHhHhhcCceEEEEEeecCCCCcccHH
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHKLL---GTELYQMLGYEGLKETVRRVYQ-GLKRGEDEFQVKSKSILSCATKWPVDTVP 94 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~~~---~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~i~~rlI~~~~R~~~~e~a~ 94 (203)
.+...++...|++.+||-.-+..-. -.|-..--..+++.+++++|.+ +|.. ..|++ |+++-=|++++.-.
T Consensus 32 ~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~--s~yPv----IlslE~Hcs~~qQ~ 105 (258)
T cd08630 32 TEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLTSKILFRDVIQAVRQHAFTA--SPYPV----ILSLENHCGLEQQA 105 (258)
T ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccccceEHHHHHHHHHHHhccC--CCCCE----EEEeeccCCHHHHH
Confidence 3556677789999999996542210 0100000123788888888766 4432 23554 99998899887766
Q ss_pred HHHHHHHhhCC
Q psy15247 95 DTLRLAQNCTH 105 (203)
Q Consensus 95 ~~~~~a~~~~~ 105 (203)
.+++...+..+
T Consensus 106 ~~a~~l~~~~G 116 (258)
T cd08630 106 AMARHLQTILG 116 (258)
T ss_pred HHHHHHHHHHh
Confidence 66666655433
No 215
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=21.18 E-value=3.2e+02 Score=22.89 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=45.4
Q ss_pred HHHHHHHHCCceEEEEccCcc------chhhhhhhhccCCCCHHHHHHHHHHH-HHHhHhhcCceEEEEEeecCCCCccc
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPH------KLLGTELYQMLGYEGLKETVRRVYQG-LKRGEDEFQVKSKSILSCATKWPVDT 92 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~------~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~i~~rlI~~~~R~~~~e~ 92 (203)
+.+.++...|++.+||-.=+. .+... ..-..+++++++++|.+- |. ...|+ +|+++--|++.+.
T Consensus 33 ~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~---t~ts~i~f~dvl~~I~~~aF~--~s~yP----vILslE~hcs~~q 103 (228)
T cd08599 33 APIIEALLRGCRVIELDLWPGGRGDICVLHGG---TLTKPVKFEDCIKAIKENAFT--ASEYP----VIITLENHLSPEL 103 (228)
T ss_pred HHHHHHHHhCCCEEEEEeecCCCCCeEEEeCC---CCcCCcCHHHHHHHHHHHhcc--CCCCC----EEEEEecCCCHHH
Confidence 346677789999999985432 21100 001246777777766543 11 12344 6999999998876
Q ss_pred HHHHHHHHHhhC
Q psy15247 93 VPDTLRLAQNCT 104 (203)
Q Consensus 93 a~~~~~~a~~~~ 104 (203)
-..+++...+..
T Consensus 104 Q~~~a~~l~~~l 115 (228)
T cd08599 104 QAKAAQILRETL 115 (228)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 216
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.00 E-value=6.7e+02 Score=23.18 Aligned_cols=83 Identities=6% Similarity=0.006 Sum_probs=45.2
Q ss_pred HHHHHHHHCCceEEEEccC---ccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCc--eEEEEEeecCCCCcccHH
Q psy15247 20 EFIEDCSKNNVAYVEVRYM---PHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV--KSKSILSCATKWPVDTVP 94 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~---P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i--~~rlI~~~~R~~~~e~a~ 94 (203)
++++.+.+-|+.++.+=+- +.... ...++.+.+++.+++ +..+ +.|+ .+.+|+...- .+.+...
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~-----~~~K~~t~~~~~~ai----~~l~-~~Gi~~~~~~I~G~P~-et~e~~~ 356 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLD-----HFRKGTTTSTNKEAI----RLLR-QHNILSEAQFITGFEN-ETDETFE 356 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHH-----HhcCCCCHHHHHHHH----HHHH-HCCCcEEEEEEEECCC-CCHHHHH
Confidence 4555555566666665322 22111 113456766655443 3333 2464 4556665543 5677888
Q ss_pred HHHHHHHhhCCCceEEEeCC
Q psy15247 95 DTLRLAQNCTHYGVVGIDLL 114 (203)
Q Consensus 95 ~~~~~a~~~~~~~vvG~dL~ 114 (203)
++++.+.+..++ .+.+...
T Consensus 357 ~t~~~~~~l~~~-~~~~~~~ 375 (497)
T TIGR02026 357 ETYRQLLDWDPD-QANWLMY 375 (497)
T ss_pred HHHHHHHHcCCC-ceEEEEe
Confidence 899988888654 4444433
No 217
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=20.75 E-value=2.2e+02 Score=25.23 Aligned_cols=50 Identities=24% Similarity=0.128 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+++-+.+.++ +.|+.+.+.-.+..+-+.+.+.+.++.+.++..+.|||+|
T Consensus 42 ~~~~v~~~L~----~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 42 YLDRVIELLK----QAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred HHHHHHHHHH----HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4444444443 2366654332333444556677777888887778899885
No 218
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=20.66 E-value=3.4e+02 Score=23.18 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHHHHHHCCceEEEEccCccchh-----hhhhhhccCCCCHHHHHHHHHH-HHHHhHhhcCceEEEEEeecCCCCcccH
Q psy15247 20 EFIEDCSKNNVAYVEVRYMPHKLL-----GTELYQMLGYEGLKETVRRVYQ-GLKRGEDEFQVKSKSILSCATKWPVDTV 93 (203)
Q Consensus 20 ~~~~~~~~dgV~Y~Elr~~P~~~~-----~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~i~~rlI~~~~R~~~~e~a 93 (203)
+...++...|++.+||-.=+.... -.|-..--..+++.+++++|.+ ||. ...|+ +|+++--|++++.-
T Consensus 33 e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tlts~i~f~~v~~aIk~~AF~--~s~yP----vIlslE~Hcs~~qQ 106 (257)
T cd08591 33 EMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTMCTEILFKDVIEAIAETAFK--TSEYP----VILSFENHCSSKQQ 106 (257)
T ss_pred HHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCCccCeEHHHHHHHHHHHhcc--CCCCC----EEEEEecCCCHHHH
Confidence 456677789999999985433210 0000000124778888887765 332 12345 49999999998776
Q ss_pred HHHHHHHHhh
Q psy15247 94 PDTLRLAQNC 103 (203)
Q Consensus 94 ~~~~~~a~~~ 103 (203)
..+++...+.
T Consensus 107 ~~ma~il~~~ 116 (257)
T cd08591 107 AKMAEYCREI 116 (257)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 219
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.44 E-value=3.9e+02 Score=21.44 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHhhc---CceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEeC
Q psy15247 58 ETVRRVYQGLKRGEDEF---QVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113 (203)
Q Consensus 58 ~~~~~v~~~~~~~~~~~---~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~dL 113 (203)
.+...+.+++.++.++. |..+.+++.-... +++...+.++.++....++|+....
T Consensus 12 ~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~-~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 12 TWRAQMLDEFKAQAKELKKAGLISEFIVTSADG-DVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred hHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36667778887777777 7766777765554 3344556666666655566666543
No 220
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=20.33 E-value=2.2e+02 Score=17.37 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHh
Q psy15247 156 EDYQLAQS-WGFTREQFKIINLNAAEASFQPE-HEKKELIKLLES 198 (203)
Q Consensus 156 ~Ey~~~~~-~~l~~~~l~~l~~nai~~sF~~~-~~k~~l~~~~~~ 198 (203)
.+|..... .+++.+.+..|....+..-=+.. ..|.+++..++.
T Consensus 17 ~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 17 GQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 67888888 89999999999888888554554 788888887764
No 221
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.17 E-value=2.3e+02 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHHHHHHHHHhhCCCceEEEe
Q psy15247 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGID 112 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG~d 112 (203)
+.+.+.+.++ +.|+.+.++-.+..+-+.+.+.+.++.+.....+.|||+|
T Consensus 39 ~~~~v~~~L~----~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiG 88 (370)
T cd08551 39 VLDKVIDSLK----EAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVG 88 (370)
T ss_pred cHHHHHHHHH----HcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4444444443 2356554333444556667788888888877778899885
No 222
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.15 E-value=5.3e+02 Score=22.35 Aligned_cols=77 Identities=6% Similarity=0.037 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCceEEEEccC-c--cchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCCCCcccHH
Q psy15247 18 AYEFIEDCSKNNVAYVEVRYM-P--HKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVP 94 (203)
Q Consensus 18 ~~~~~~~~~~dgV~Y~Elr~~-P--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~~~~e~a~ 94 (203)
..+.++.+.+.|+..+-+-.. + ..+.. .+|.. ...+.++++++..+ +.|+.+.+.+.+.+. +.++..
T Consensus 94 ~~e~~~~L~~~g~~~v~iSldg~~~e~~d~------~rg~~--g~f~~v~~~i~~l~-~~g~~v~v~~vv~~~-N~~~l~ 163 (358)
T TIGR02109 94 TEARLDALADAGLDHVQLSFQGVDEALADR------IAGYK--NAFEQKLAMARAVK-AAGLPLTLNFVIHRH-NIDQIP 163 (358)
T ss_pred CHHHHHHHHhCCCCEEEEeCcCCCHHHHHH------hcCCc--cHHHHHHHHHHHHH-hCCCceEEEEEeccC-CHHHHH
Confidence 345666677777776655544 1 11111 11221 12334444555443 467777777777764 455677
Q ss_pred HHHHHHHhhC
Q psy15247 95 DTLRLAQNCT 104 (203)
Q Consensus 95 ~~~~~a~~~~ 104 (203)
++++++.+..
T Consensus 164 ~~~~~~~~lg 173 (358)
T TIGR02109 164 EIIELAIELG 173 (358)
T ss_pred HHHHHHHHcC
Confidence 8888887763
No 223
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=20.11 E-value=5.4e+02 Score=21.79 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCceEEEEccCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcCceEEEEEeecCC--CCcc---cH
Q psy15247 19 YEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATK--WPVD---TV 93 (203)
Q Consensus 19 ~~~~~~~~~dgV~Y~Elr~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~rlI~~~~R~--~~~e---~a 93 (203)
..++.-+...|+.-+|||..+....-. .|.+..++ +...+++|+.+.-|-..-|. ++++ .+
T Consensus 20 ~affa~ak~lg~s~VeiRndl~~~~I~------dg~p~a~v--------ka~Aek~Gl~IvSINAlypFn~wt~~~~a~a 85 (272)
T COG4130 20 EAFFALAKRLGLSKVEIRNDLPSNAIA------DGTPAAEV--------KALAEKAGLTIVSINALYPFNEWTEERVAEA 85 (272)
T ss_pred HHHHHHHHHcCcceeEEecCCCccccc------CCCCHHHH--------HHHHHHcCcEEEEeeccccccccChHHHHHH
Confidence 345555667899999999996543222 26777653 33445678887777776664 2332 34
Q ss_pred HHHHHHHHhhCCCceEEE
Q psy15247 94 PDTLRLAQNCTHYGVVGI 111 (203)
Q Consensus 94 ~~~~~~a~~~~~~~vvG~ 111 (203)
..+++.|..+--+..|=.
T Consensus 86 ~~la~yA~acGA~aLvlc 103 (272)
T COG4130 86 RGLADYAAACGAKALVLC 103 (272)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 555555555533334433
No 224
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.08 E-value=3.7e+02 Score=23.79 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHhhcCce-EEEEEeecCCCCcccHHHHHHHHHhh
Q psy15247 59 TVRRVYQGLKRGEDEFQVK-SKSILSCATKWPVDTVPDTLRLAQNC 103 (203)
Q Consensus 59 ~~~~v~~~~~~~~~~~~i~-~rlI~~~~R~~~~e~a~~~~~~a~~~ 103 (203)
.+.-|++||++|... |.. +++=..++|..+..+..++++.+...
T Consensus 135 ~~~~Vl~GI~~A~~~-Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~ 179 (322)
T COG2896 135 RLDRVLEGIDAAVEA-GLTPVKLNTVLMKGVNDDEIEDLLEFAKER 179 (322)
T ss_pred cHHHHHHHHHHHHHc-CCCceEEEEEEecCCCHHHHHHHHHHHhhc
Confidence 356778888877654 654 88888899998888899999988876
No 225
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=20.02 E-value=5.8e+02 Score=22.49 Aligned_cols=52 Identities=2% Similarity=0.015 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEc-----cCccchhhhhhhhccCCCCHHHHHHHHHHHHHHhHhhcC
Q psy15247 12 DAVERFAYEFIEDCSKNNVAYVEVR-----YMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQ 75 (203)
Q Consensus 12 ~~l~~~~~~~~~~~~~dgV~Y~Elr-----~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (203)
.++..+..+.++++.+-||.|+.+- ..+.. . . + +++++.+++.++.+.+..|
T Consensus 154 ~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~---~-------~-~-~~~l~~~~~~~~~~~~~~~ 210 (330)
T COG0620 154 KDIALALRDEVKDLEDAGIKIIQIDEPALREGLPL---R-------R-D-DDYLEWAVEAINLAAAGVG 210 (330)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCcc---c-------c-c-hHHHHHHHHHHHHHHhcCC
Confidence 5778888999999999999999954 33211 1 1 3 5799999999998877554
Done!